Citrus Sinensis ID: 031242

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPASSDEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcEEEEc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccccccccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEcc
Coil and Loop (DISEMBL)
MGQFKSLYALNMshnaltgsipssfgnlkQIESLDLsmnnlsgkipsqlASLNFLSVLNLSYNnlvgkiptstqlqsfsptsyegnkglygppltnesqtrpselppspppassdeiDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Flexible Loop (DISEMBL)
MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPASSDEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Low Complexity Region (SEG)
MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQlaslnflsvlnlsynnlVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRpselppspppassDEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Disordered region (IsUnstruct)
******************************************GKIPSQLASLNFLSVLNLSYNNLVGKIP**********************************************IDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRF**
Disordered Region (DISOPRED)
MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPP**************************FFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Disordered Region (DISEMBL)
MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLT****************ASSDEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Disordered Region (DISPRO)
*GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNES****************DEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPASSDEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.858	0.120	0.418	2e-19
Q9LJF3	1164	Receptor-like protein kin	no	no	0.858	0.120	0.414	6e-19
Q9C9H7	847	Receptor-like protein 12	no	no	0.920	0.177	0.363	1e-18
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.779	0.124	0.376	3e-18
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.779	0.174	0.391	5e-17
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.760	0.123	0.407	4e-16
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.552	0.082	0.483	1e-15
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.932	0.146	0.327	2e-15
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.564	0.076	0.425	5e-15
C0LGE4	882	Probable LRR receptor-lik	no	no	0.558	0.103	0.467	8e-15

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 76/148 (51%), Gaps = 8/148 (5%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
           G    L  LN+ HN +TG+IP SFG LK I  LDLS NNL G +P  L SL+FLS L++S
Sbjct: 660 GNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVS 719

Query: 62  YNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPASSDEIDWFF 121
            NNL G IP   QL +F  + Y  N GL G PL      RP    P  P  S        
Sbjct: 720 NNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPL------RPCGSAPRRPITSRIHAKKQT 773

Query: 122 IAMSI--GFAVGFGAVVSPLMFSVQVNK 147
           +A ++  G A  F   V  +M   +V K
Sbjct: 774 VATAVIAGIAFSFMCFVMLVMALYRVRK 801

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 74/147 (50%), Gaps = 7/147 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
           G    L  LN+ HN LTG+IP SFG LK I  LDLS N+L G +P  L  L+FLS L++S
Sbjct: 660 GAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVS 719

Query: 62  YNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPL-TNESQTRPSELPPSPPPASSDEIDWF 120
            NNL G IP   QL +F  T Y  N GL G PL    S +RP+     P   S       
Sbjct: 720 NNNLTGPIPFGGQLTTFPLTRYANNSGLCGVPLPPCSSGSRPTRSHAHPKKQS------I 773

Query: 121 FIAMSIGFAVGFGAVVSPLMFSVQVNK 147
              MS G    F  +V  +M   +  K
Sbjct: 774 ATGMSAGIVFSFMCIVMLIMALYRARK 800

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 4/154 (2%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +G  K L  LN+S NA T  IP    NL ++E+LD+S N LSG+IP  LA+L+FLS +N 
Sbjct: 678 LGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNF 737

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYG--PPLTNESQTRP-SELPPSPPPASSDEI 117
           S+N L G +P  TQ Q    +S+  N GLYG      +     P S+LP     A  +  
Sbjct: 738 SHNLLQGPVPRGTQFQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQLPEDLSEAEENMF 797

Query: 118 DWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYND 151
           +W   A++ G  V  G V+    ++   ++W+ +
Sbjct: 798 NWVAAAIAYGPGVLCGLVIGHF-YTSHNHEWFTE 830

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 3/130 (2%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
           G  + L+ LN+ +N L+G+IP++   +  +E LDLS NNLSG IP  L  L+FLS  +++
Sbjct: 554 GDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVA 613

Query: 62  YNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPASSDEIDWFF 121
           YN L G IPT  Q Q+F  +S+EGN+GL G    + S    ++  P      S +     
Sbjct: 614 YNKLSGPIPTGVQFQTFPNSSFEGNQGLCGE---HASPCHITDQSPHGSAVKSKKNIRKI 670

Query: 122 IAMSIGFAVG 131
           +A+++G  +G
Sbjct: 671 VAVAVGTGLG 680

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 11/138 (7%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +GQ K L+ L +  N L+GSIP    NL  +E LDLS NNLSG IP  L +LNFLS  N+
Sbjct: 596 VGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFLSYFNV 655

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQ-TRPSELPPSPPPASSDEIDW 119
           + N+L G IP+  Q  +F   ++EGN  L G  L    + TR  E         +DE++ 
Sbjct: 656 ANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLLTSCKPTRAKE---------NDELNR 706

Query: 120 -FFIAMSIGFAVGFGAVV 136
            F + ++IG+ + F +++
Sbjct: 707 TFLMGIAIGYFLSFVSIL 724

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 70/130 (53%), Gaps = 6/130 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
           G  K L+  ++  NAL+GSIPSS   +  +E+LDLS N LSG IP  L  L+FLS  +++
Sbjct: 544 GNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSIPVSLQQLSFLSKFSVA 603

Query: 62  YNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPASSDEIDWFF 121
           YNNL G IP+  Q Q+F  +S+E N       L  E +   SE   S     S       
Sbjct: 604 YNNLSGVIPSGGQFQTFPNSSFESNH------LCGEHRFPCSEGTESALIKRSRRSRGGD 657

Query: 122 IAMSIGFAVG 131
           I M+IG A G
Sbjct: 658 IGMAIGIAFG 667

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 56/91 (61%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +GQ K L+ L +  N  +GSIP    NL  +E LDLS NNLSG+IP  L  L+FLS  N+
Sbjct: 601 VGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLTGLHFLSYFNV 660

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYG 91
           + N L G IPT TQ  +F   ++EGN  L G
Sbjct: 661 ANNTLSGPIPTGTQFDTFPKANFEGNPLLCG 691

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 7/159 (4%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +G+ K L+ L++S N  TG+IP S   L  +E LDLS N+L G IP    SL FLS  ++
Sbjct: 556 IGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSV 615

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPASSDEIDWF 120
           +YN L G IP+  Q  SF  +S+EGN GL     +       + L P      ++    F
Sbjct: 616 AYNRLTGAIPSGGQFYSFPHSSFEGNLGLCRAIDSPCDVLMSNMLNPKGSSRRNNNGGKF 675

Query: 121 ----FIAMSIGFAVGFGAVVSPLMFSV---QVNKWYNDL 152
                + ++I  A+G   ++S ++  +    V+   ND+
Sbjct: 676 GRSSIVVLTISLAIGITLLLSVILLRISRKDVDDRINDV 714

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 58/94 (61%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +G    L+ LN+ HN ++GSIP   G+L+ +  LDLS N L G+IP  +++L  L+ ++L
Sbjct: 674 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 733

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPL 94
           S NNL G IP   Q ++F P  +  N GL G PL
Sbjct: 734 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 767

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 57/92 (61%)

Query: 10  LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI 69
           L++  N L GSIP   GNL +++ LDLS N+LSG IPS L SLN L+  N+SYNNL G I
Sbjct: 409 LDLHRNRLNGSIPPELGNLSKVQFLDLSQNSLSGPIPSSLGSLNTLTHFNVSYNNLSGVI 468

Query: 70  PTSTQLQSFSPTSYEGNKGLYGPPLTNESQTR 101
           P    +Q+F  +++  N  L G PL     +R
Sbjct: 469 PPVPMIQAFGSSAFSNNPFLCGDPLVTPCNSR 500

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
359481293	1197	PREDICTED: leucine-rich repeat receptor	0.963	0.131	0.547	7e-41
297735649	778	unnamed protein product [Vitis vinifera]	0.963	0.201	0.547	9e-41
224139184	1032	predicted protein [Populus trichocarpa]	0.914	0.144	0.567	2e-40
255579300	1065	serine-threonine protein kinase, plant-t	0.914	0.139	0.528	3e-39
147777334	247	hypothetical protein VITISV_012181 [Viti	0.938	0.619	0.521	4e-39
356506584	1067	PREDICTED: LRR receptor-like serine/thre	0.975	0.149	0.531	4e-39
297735650	2134	unnamed protein product [Vitis vinifera]	0.938	0.071	0.521	2e-38
356495069	1062	PREDICTED: receptor-like protein 12-like	0.975	0.149	0.512	3e-38
357469037	1039	Receptor-like protein kinase [Medicago t	0.969	0.152	0.534	9e-38
359481298	1070	PREDICTED: LRR receptor-like serine/thre	0.944	0.143	0.553	1e-37

>gi|359481293|ref|XP_003632602.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 110/159 (69%), Gaps = 2/159 (1%)

Query: 1    MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
            MG F SLY LN+SHN  TG IPSS GNL+Q+ESLDLS N LSG+IP+QLA+LNFLSVLNL
Sbjct: 944  MGNFTSLYVLNLSHNGFTGHIPSSIGNLRQLESLDLSRNRLSGEIPTQLANLNFLSVLNL 1003

Query: 61   SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPASSD--EID 118
            S+N LVG+IP   Q+Q+FS TSYEGNK L G PL N +   P++          D  E D
Sbjct: 1004 SFNQLVGRIPPGNQMQTFSETSYEGNKELCGWPLINCTDPPPTQDKRFQDKRFQDKEEFD 1063

Query: 119  WFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFI 157
            W FI   +GF VG G +V+PL+F  +  KW ++ + +F+
Sbjct: 1064 WEFIITGLGFGVGAGIIVAPLIFWKKGRKWLDECVDRFV 1102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735649|emb|CBI18143.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (433), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 110/159 (69%), Gaps = 2/159 (1%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           MG F SLY LN+SHN  TG IPSS GNL+Q+ESLDLS N LSG+IP+QLA+LNFLSVLNL
Sbjct: 525 MGNFTSLYVLNLSHNGFTGHIPSSIGNLRQLESLDLSRNRLSGEIPTQLANLNFLSVLNL 584

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPASSD--EID 118
           S+N LVG+IP   Q+Q+FS TSYEGNK L G PL N +   P++          D  E D
Sbjct: 585 SFNQLVGRIPPGNQMQTFSETSYEGNKELCGWPLINCTDPPPTQDKRFQDKRFQDKEEFD 644

Query: 119 WFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFI 157
           W FI   +GF VG G +V+PL+F  +  KW ++ + +F+
Sbjct: 645 WEFIITGLGFGVGAGIIVAPLIFWKKGRKWLDECVDRFV 683

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139184|ref|XP_002323001.1| predicted protein [Populus trichocarpa] gi|222867631|gb|EEF04762.1| predicted protein [Populus trichocarpa]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 112/164 (68%), Gaps = 15/164 (9%)

Query: 1    MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
            +G+F +LY LN+SHN LTG IPSS GNL Q+ESLDLS N LSG+IP+QL SL FLSVLNL
Sbjct: 876  IGKFNALYVLNLSHNVLTGQIPSSLGNLSQLESLDLSSNQLSGQIPAQLTSLTFLSVLNL 935

Query: 61   SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPL------TNESQ-TRPSELPPSPPPAS 113
            SYN LVG+IPT  Q  +FS  S+EGN+GL GPPL      TNES  TR S          
Sbjct: 936  SYNRLVGRIPTGNQFLTFSSDSFEGNQGLCGPPLKLACSNTNESNSTRGSN--------Q 987

Query: 114  SDEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFI 157
              E DW FI   +GF +G G VV+PL+FS ++NK Y+D I K +
Sbjct: 988  RKEFDWQFIVPGLGFGLGSGIVVAPLLFSKKINKCYDDRIDKIL 1031

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579300|ref|XP_002530495.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223529952|gb|EEF31879.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 103/157 (65%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +GQF +LY LN+SHNAL G IP S GN+  +ESLDLS N+L+G+IP QL  L FLS LNL
Sbjct: 820 LGQFSALYILNLSHNALDGQIPPSLGNVSNLESLDLSNNHLTGEIPRQLTDLTFLSFLNL 879

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPASSDEIDWF 120
           S N LVG IPT  Q Q+F  TSY GNKGL GPPL+      P          +S+E DW 
Sbjct: 880 SGNELVGDIPTGRQFQTFENTSYRGNKGLCGPPLSKLCSHTPPGGKSERHIHNSNEFDWD 939

Query: 121 FIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFI 157
           FI   +GF +G GA+V+P+MF  + NKW +D I K +
Sbjct: 940 FIVRGLGFGMGAGAIVAPIMFWKKANKWCDDRIDKIL 976

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777334|emb|CAN67204.1| hypothetical protein VITISV_012181 [Vitis vinifera]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 106/165 (64%), Gaps = 12/165 (7%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           MG   SLYALN+SHNALTG IPSS G L+Q+ESLDLS N+L G+IP+Q  SLNFLS LNL
Sbjct: 67  MGSLISLYALNLSHNALTGQIPSSLGKLRQLESLDLSQNSLRGEIPAQFVSLNFLSFLNL 126

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPP------PASS 114
           S+N L G+IPT TQLQ+F  +SYEGNK L GPPL  +         PSPP      P S 
Sbjct: 127 SFNQLEGEIPTGTQLQTFLESSYEGNKELCGPPLKRKCTD------PSPPTYEETHPDSG 180

Query: 115 DEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYR 159
            +I+W +I   IGF  G G V+ PL+      +WY   + + + R
Sbjct: 181 MKINWVYIGAEIGFVTGIGIVIGPLVLWRTWRRWYYTHVDRLLLR 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506584|ref|XP_003522059.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Glycine max]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 111/160 (69%), Gaps = 1/160 (0%)

Query: 3    QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
             +K L+ LN+S+NAL+G IPSS GN+ Q+ESLDLS N+LSG+IP QLASL+FLS LNLS+
Sbjct: 886  DWKELHVLNLSNNALSGKIPSSIGNMSQLESLDLSQNSLSGEIPVQLASLSFLSYLNLSF 945

Query: 63   NNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSE-LPPSPPPASSDEIDWFF 121
            N+L+GKIPTSTQLQSF  +S+EGN GLYGPPLT     +  E LP       +  IDW F
Sbjct: 946  NHLMGKIPTSTQLQSFPASSFEGNDGLYGPPLTKNPDHKEQEVLPQQECGRLACTIDWNF 1005

Query: 122  IAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRF 161
            I++ +G   G G +  PL+   Q   WY  L++K + + F
Sbjct: 1006 ISVELGLIFGHGVIFGPLLIWKQWRLWYWQLVHKILCQIF 1045

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735650|emb|CBI18144.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 106/165 (64%), Gaps = 12/165 (7%)

Query: 1    MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
            MG   SLYALN+SHNALTG IPSS G L+Q+ESLDLS N+L G+IP Q  SLNFLS LNL
Sbjct: 1111 MGSLISLYALNLSHNALTGQIPSSLGKLRQLESLDLSQNSLRGEIPPQFVSLNFLSFLNL 1170

Query: 61   SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPP------PASS 114
            S+N L G+IPT TQLQ+F  +SYEGNK L GPPL  +         PSPP      P S 
Sbjct: 1171 SFNQLEGEIPTGTQLQTFLESSYEGNKELCGPPLKRKCTD------PSPPTSEETHPDSG 1224

Query: 115  DEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYR 159
             +I+W +I   IGF  G G V+ PL+   +  +WY   + + + R
Sbjct: 1225 MKINWVYIGAEIGFVTGIGIVIGPLVLWRRWRRWYYTHVDRLLLR 1269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495069|ref|XP_003516403.1| PREDICTED: receptor-like protein 12-like [Glycine max]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 111/160 (69%), Gaps = 1/160 (0%)

Query: 3    QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
             FK+LY LN+S+NAL+G IPSS GN+ Q+ESLDLS N+LSG+IP +LA L+F+S LNLS+
Sbjct: 880  DFKALYILNLSNNALSGKIPSSIGNMIQLESLDLSQNSLSGEIPVELARLSFISYLNLSF 939

Query: 63   NNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPAS-SDEIDWFF 121
            NNLVG+IPT TQ+QSFS +S+EGN GL+GPPLT +   +   + P P     +  IDW F
Sbjct: 940  NNLVGQIPTGTQIQSFSASSFEGNDGLFGPPLTEKPDGKKQGVLPQPECGRLACTIDWNF 999

Query: 122  IAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRF 161
            +++ +G   G G V  PL+   +   WY  LI+K +   F
Sbjct: 1000 VSVELGLVFGHGIVFGPLLIWKRWRVWYWQLIHKILCWIF 1039

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469037|ref|XP_003604803.1| Receptor-like protein kinase [Medicago truncatula] gi|355505858|gb|AES87000.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 111/161 (68%), Gaps = 3/161 (1%)

Query: 4    FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
            FK+L+ LN S+N L+G IPSS GNLKQ+ESLDLS N+L G+IP QLASL+FLS LNLS+N
Sbjct: 859  FKALHVLNFSNNCLSGEIPSSIGNLKQLESLDLSNNSLIGEIPMQLASLSFLSYLNLSFN 918

Query: 64   NLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPAS---SDEIDWF 120
            +  GKIPT TQLQSF  +S++GN GLYGP LT ++  +  EL P P   S   S  IDW 
Sbjct: 919  HFAGKIPTGTQLQSFDDSSFKGNDGLYGPLLTRKAYDKKQELHPQPACRSRKLSCLIDWN 978

Query: 121  FIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRF 161
            F+++ +GF  G G+V+ P+MF  Q    Y  L+ K +   F
Sbjct: 979  FLSVELGFIFGLGSVIGPIMFWKQWRVGYWKLMDKILCWIF 1019

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481298|ref|XP_003632604.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 103/159 (64%), Gaps = 5/159 (3%)

Query: 1    MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
            MG F SLY LN+SHN  TG IPSS GNL+Q+ESLDLS N LSG+IP+QLA+LNFLSVLNL
Sbjct: 891  MGNFTSLYVLNLSHNGFTGHIPSSIGNLRQLESLDLSQNRLSGEIPTQLANLNFLSVLNL 950

Query: 61   SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPASSDEIDWF 120
            S+N LVG+IP   Q+Q+FS TSYEGNK L G PL       P E        S  EI W 
Sbjct: 951  SFNQLVGRIPPGNQMQTFSETSYEGNKELCGWPLDLSCTDPPPEFDDRHS-GSRMEIKWE 1009

Query: 121  FIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYR 159
            +IA  IGF  G G V+ PL+   +  K Y    YK + R
Sbjct: 1010 YIAPEIGFVTGLGIVIWPLVLCRRWRKCY----YKHVDR 1044

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.907	0.145	0.367	4.1e-18
TAIR|locus:2829370	915	RLP40 "receptor like protein 4	0.944	0.168	0.362	5.7e-18
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.975	0.181	0.333	6.2e-17
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.828	0.229	0.386	8.5e-17
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.907	0.150	0.354	5.3e-16
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.907	0.148	0.347	5.4e-16
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.895	0.164	0.357	1.6e-15
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.907	0.156	0.324	2.2e-15
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.932	0.171	0.339	4.1e-15
TAIR|locus:2046500	218	RLP25 "receptor like protein 2	0.932	0.697	0.318	6.9e-15

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 4.1e-18, P = 4.1e-18
 Identities = 57/155 (36%), Positives = 77/155 (49%)

Query:     1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQXXXXXXXXXXXX 60
             +G  K L  LNMS N  TG IPSS  NLK +ESLD+S NN+SG+IP +            
Sbjct:   851 IGLLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINV 910

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNE----SQTRXXXXXXXXXXXXXDE 116
                  VG IP  TQ Q    +SYEGN GL GP L N      ++              +E
Sbjct:   911 SHNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSLENVCGHIKESTPTQTEPLETKEEEEE 970

Query:   117 IDWFFIAMSIGFAVG--FGAVVSPLMFSVQVNKWY 149
               + +IA  +GFA G  FG  +  ++ S + ++W+
Sbjct:   971 ESFSWIAAGLGFAPGVVFGLAMGYIVVSYK-HQWF 1004

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2829370 RLP40 "receptor like protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 5.7e-18, P = 5.7e-18
 Identities = 58/160 (36%), Positives = 80/160 (50%)

Query:     1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQXXXXXXXXXXXX 60
             +G  K+L ALN+S+NA TG IP SF NLK++ESLDLS N LSG IP+             
Sbjct:   753 IGLLKALIALNLSNNAFTGHIPLSFANLKKMESLDLSSNQLSGTIPNGLRTLSFLAYVNV 812

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNE---SQTRXXXXXXXXXXXXXDE- 116
                  +G+IP  TQ+     +S+EGN GL G PL      + T              DE 
Sbjct:   813 SHNQLIGEIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTNTPPAQHPKEQEEEEEDEQ 872

Query:   117 -IDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYK 155
              ++W  +A+  G  V  G  ++ L+ S+   KW   L+ K
Sbjct:   873 VLNWKAVAIGYGIGVLLGLAIAQLI-SLYKPKWLASLVIK 911

GO:0009507 "chloroplast" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 6.2e-17, P = 6.2e-17
 Identities = 55/165 (33%), Positives = 82/165 (49%)

Query:     1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQXXXXXXXXXXXX 60
             +G  K L+ LN+S N  TG IPSS GNL+++ESLD+S N LSG+IP +            
Sbjct:   707 IGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNF 766

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRXXXXXXXXXXXXXDEI-DW 119
                  VG++P  TQ ++ S +S+E N GL G PL                    +++  W
Sbjct:   767 SHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEECRVVHEPTPSGESETLESEQVLSW 826

Query:   120 FFIAMSIGFAVGF--GAVVSPLMFSVQVNKWYNDLIYKFIYRRFR 162
               IA +IGF  G   G  +  ++ S +  +W+  ++Y    RR R
Sbjct:   827 --IAAAIGFTPGIVLGLTIGHIVLSSKP-RWFFKVLYINNSRRRR 868

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 8.5e-17, P = 8.5e-17
 Identities = 53/137 (38%), Positives = 70/137 (51%)

Query:     1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQXXXXXXXXXXXX 60
             +G  K+L ALN+S+N+ TG IP SF N+ ++ESLDLS N LSG+IP +            
Sbjct:   427 IGLLKTLIALNLSNNSFTGHIPMSFANVTELESLDLSGNKLSGEIPQELGRLSYLAYIDV 486

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRXXXXXXXXXXXXXDEI-DW 119
                   GKIP  TQ+     +S+EGN GL G PL  ES  R             +EI +W
Sbjct:   487 SDNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPL-EESCLREDAPSTQEPEEEEEEILEW 545

Query:   120 FFIAMSIGFAVGFGAVV 136
                A+  G  V FG  +
Sbjct:   546 RAAAIGYGPGVLFGLAI 562

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 5.3e-16, P = 5.3e-16
 Identities = 56/158 (35%), Positives = 78/158 (49%)

Query:     1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQXXXXXXXXXXXX 60
             +G  K L+ LN+S+NAL+G I SS GNL  +ESLD+S N LSG+IP +            
Sbjct:   814 IGLLKELHVLNLSNNALSGHIASSMGNLMALESLDVSQNKLSGEIPQELGKLTYLAYMNF 873

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTN--ESQTRXXXXXXXXXXXXXDE-- 116
                  VG +P  TQ Q+   +S+E N GLYGP L    +   +             DE  
Sbjct:   874 SHNQLVGLLPGGTQFQTQKCSSFEDNHGLYGPSLEKICDIHGKTPQQSDMAPEPEEDEEE 933

Query:   117 -IDWFFIAMSIGFAVG--FGAVVSPLMFSVQVNKWYND 151
              I W  IA  IGF +G   G     ++FS + + W+ +
Sbjct:   934 VISW--IAAVIGFILGTALGLTFGCILFSYKPD-WFKN 968

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 5.4e-16, P = 5.4e-16
 Identities = 56/161 (34%), Positives = 76/161 (47%)

Query:     1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQXXXXXXXXXXXX 60
             +G  K L+ LN+S NA TG IPSS  NL  +ESLD+S N + G+IP +            
Sbjct:   824 VGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWINV 883

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTN-------ESQTRXXXXXXXXXXXX 113
                  VG IP  TQ    + +SYEGN G+YG  L +           +            
Sbjct:   884 SHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDVCGDIHAPRPPQAVLPHSSSSSSE 943

Query:   114 XDE-IDWFFIAMSIGFAVG--FGAVVSPLMFSVQVNKWYND 151
              DE I W  IA  +GFA G  FG  +  +M S + ++W+ D
Sbjct:   944 EDELISW--IAACLGFAPGMVFGLTMGYIMTSHK-HEWFMD 981

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 55/154 (35%), Positives = 75/154 (48%)

Query:     1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQXXXXXXXXXXXX 60
             +G  K+L ALN+S+NA TG IP S  NLK+IESLDLS N LSG IP+             
Sbjct:   720 LGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGLGTLSFLAYMNV 779

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPL------TNESQTRXXXXXXXXXXXXX 114
                   G+IP  TQ+     +S+EGN GL G PL      TN    +             
Sbjct:   780 SHNQLNGEIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTNAPPAQKPKEEEEAEEDE- 838

Query:   115 DEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKW 148
              E++W  +A+  G  V  G  ++ L+ S +  +W
Sbjct:   839 QELNWKAVAIGYGVGVLLGLAIAQLIASYKP-EW 871

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 50/154 (32%), Positives = 75/154 (48%)

Query:     1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQXXXXXXXXXXXX 60
             +G  K L  LN+S+NA  G IPSS GNL  +ESLD+S N L+G+IP +            
Sbjct:   774 IGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLAYMNF 833

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTN---ESQTRXXXXXXXXXXXXXDEI 117
                   G +P  TQ +  + +++E N GL+GP L     +  T              DE 
Sbjct:   834 SHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRDKHTPASQQNETTETEEEDEE 893

Query:   118 DWFFIAMSIGFAVG--FGAVVSPLMFSVQVNKWY 149
             +  +IA +IGF  G  FG  +  ++ S +  +W+
Sbjct:   894 EISWIAAAIGFIPGIVFGLTIGYILVSYKP-EWF 926

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 55/162 (33%), Positives = 77/162 (47%)

Query:     1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQXXXXXXXXXXXX 60
             +G  K+L ALN+S+NA TG IP S  NLK+IESLDLS N LSG IP+             
Sbjct:   722 IGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGIGTLSFLAYMNV 781

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPL------TNESQTRXXXXXXXXXXXXX 114
                   G+IP  TQ+     +S+EGN GL G PL      TN    +             
Sbjct:   782 SHNQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQESCFGTNAPPAQHPKEEEEEEEEEE 841

Query:   115 DEIDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKF 156
               ++W  + +  G  V  G  ++ L+ S +  +W   L++ F
Sbjct:   842 QVLNWKGVGIGYGVGVLLGLAIAQLIASYKP-EW---LVFLF 879

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046500 RLP25 "receptor like protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 50/157 (31%), Positives = 75/157 (47%)

Query:     1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQXXXXXXXXXXXX 60
             +G  K+L ALN+S+NA  G+IP S  NL ++ESLD+S N LSG IP              
Sbjct:    55 IGLLKALIALNLSNNAFIGNIPMSMANLIELESLDMSRNGLSGTIPQGLKTLSFLGYINV 114

Query:    61 XXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNES-QTRXXXXXXXXXXXXXDE--- 116
                   G+IP  TQ+     +S+EGN GL G PL      T+             ++   
Sbjct:   115 SHNQLKGEIPQGTQITGPPKSSFEGNAGLCGLPLEESCFGTKVPPIQQSKKEDNQEDAKV 174

Query:   117 IDWFFIAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLI 153
             ++W  +A   G  V FG  ++ ++ S +  +W   +I
Sbjct:   175 LNWKAVATGYGPGVFFGLAIAQIIASYKP-EWLVKII 210

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.1 bits (182), Expect = 4e-16
 Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 8/137 (5%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           K L +L++SHN L+G IP+SF  +  +  LDLS N LSG+IP  L ++  L  +N+S+N+
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582

Query: 65  LVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPASSDEIDWFFIAM 124
           L G +P++    + + ++  GN  L G   T       S LPP      +    WF+I  
Sbjct: 583 LHGSLPSTGAFLAINASAVAGNIDLCGGDTT-------SGLPPCKRVRKT-PSWWFYITC 634

Query: 125 SIGFAVGFGAVVSPLMF 141
           ++G  +    V    +F
Sbjct: 635 TLGAFLVLALVAFGFVF 651

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 5e-15
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 16/143 (11%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           + + + L ++N+S N++ G+IP S G++  +E LDLS N+ +G IP  L  L  L +LNL
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYE--GNKGLYGPPLTNESQTRPSELPPSPPPASSDEID 118
           + N+L G++P +   +     S+    N GL G P           L    P  S     
Sbjct: 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP----------GLRACGPHLSVGAK- 546

Query: 119 WFFIAMSIGFAVGFGAVVSPLMF 141
              I ++ G +V F  +V   M 
Sbjct: 547 ---IGIAFGVSVAFLFLVICAMC 566

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.6 bits (165), Expect = 1e-13
 Identities = 30/68 (44%), Positives = 44/68 (64%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           K L  L++S N  +G++P   G+L ++  L LS N LSG+IP +L+S   L  L+LS+N 
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 65  LVGKIPTS 72
           L G+IP S
Sbjct: 535 LSGQIPAS 542

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.2 bits (164), Expect = 1e-13
 Identities = 31/72 (43%), Positives = 44/72 (61%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +G    L  L +S N L+G IP    + K++ SLDLS N LSG+IP+  + +  LS L+L
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Query: 61  SYNNLVGKIPTS 72
           S N L G+IP +
Sbjct: 555 SQNQLSGEIPKN 566

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.3 bits (154), Expect = 3e-12
 Identities = 31/71 (43%), Positives = 42/71 (59%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +G F SL  L++  N L G IP+S  NL  +E L L+ N L G+IP +L  +  L  + L
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219

Query: 61  SYNNLVGKIPT 71
            YNNL G+IP 
Sbjct: 220 GYNNLSGEIPY 230

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +G   SL  L++ +N LTG IPSS GNLK ++ L L  N LSG IP  + SL  L  L+L
Sbjct: 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291

Query: 61  SYNNLVGKIPT-STQLQS 77
           S N+L G+IP    QLQ+
Sbjct: 292 SDNSLSGEIPELVIQLQN 309

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.6 bits (152), Expect = 4e-12
 Identities = 30/72 (41%), Positives = 43/72 (59%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +    SL  L ++ N L G IP   G +K ++ + L  NNLSG+IP ++  L  L+ L+L
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 61  SYNNLVGKIPTS 72
            YNNL G IP+S
Sbjct: 244 VYNNLTGPIPSS 255

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.6 bits (152), Expect = 5e-12
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 2/67 (2%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
           SL  LN+S+N  TGSIP   G++  +E+LDLS N LSG+IP+ + S + L VL+L  N L
Sbjct: 119 SLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 66  VGKIPTS 72
           VGKIP S
Sbjct: 177 VGKIPNS 183

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.2 bits (151), Expect = 7e-12
 Identities = 32/70 (45%), Positives = 45/70 (64%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +G  K+L  L +  N L+G IP S  +L+++ SLDLS N+LSG+IP  +  L  L +L+L
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 61  SYNNLVGKIP 70
             NN  GKIP
Sbjct: 316 FSNNFTGKIP 325

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 29/70 (41%), Positives = 42/70 (60%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
           Q ++L  L++  N  TG IP +  +L +++ L L  N  SG+IP  L   N L+VL+LS 
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 63  NNLVGKIPTS 72
           NNL G+IP  
Sbjct: 366 NNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.1 bits (143), Expect = 9e-11
 Identities = 33/72 (45%), Positives = 41/72 (56%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +GQ KSL  + + +N L+G IP   G L  +  LDL  NNL+G IPS L +L  L  L L
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 61  SYNNLVGKIPTS 72
             N L G IP S
Sbjct: 268 YQNKLSGPIPPS 279

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
           G   +L  L++S+N L+G IP+  G+   ++ LDL  N L GKIP+ L +L  L  L L+
Sbjct: 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196

Query: 62  YNNLVGKIP 70
            N LVG+IP
Sbjct: 197 SNQLVGQIP 205

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 9   ALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK 68
            L + +  L G IP+    L+ ++S++LS N++ G IP  L S+  L VL+LSYN+  G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 69  IPTST-QLQSFSPTSYEGN 86
           IP S  QL S    +  GN
Sbjct: 482 IPESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.0 bits (135), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
           SL  L+++ N   G +P SFG+ K++E+LDLS N  SG +P +L SL+ L  L LS N L
Sbjct: 453 SLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511

Query: 66  VGKIP 70
            G+IP
Sbjct: 512 SGEIP 516

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 29/66 (43%), Positives = 39/66 (59%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           + L +L++S N+L+G IP     L+ +E L L  NN +GKIP  L SL  L VL L  N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 65  LVGKIP 70
             G+IP
Sbjct: 344 FSGEIP 349

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 6  SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
          +L +L++S+N LT     +F  L  ++ LDLS NNL+   P   + L  L  L+LS NNL
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 25/72 (34%), Positives = 41/72 (56%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +G  +SL  + +  N+ +G +PS F  L  +  LD+S NNL G+I S+   +  L +L+L
Sbjct: 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459

Query: 61  SYNNLVGKIPTS 72
           + N   G +P S
Sbjct: 460 ARNKFFGGLPDS 471

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 28/66 (42%), Positives = 36/66 (54%)

Query: 7   LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLV 66
           L  L +  N  +G IP + G    +  LDLS NNL+G+IP  L S   L  L L  N+L 
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Query: 67  GKIPTS 72
           G+IP S
Sbjct: 394 GEIPKS 399

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 7   LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLV 66
           L+ L +  N+L G IP S G  + +  + L  N+ SG++PS+   L  +  L++S NNL 
Sbjct: 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441

Query: 67  GKIPT------STQLQSFSPTSYEGN 86
           G+I +      S Q+ S +   + G 
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGG 467

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 9   ALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNF-LSVLNLSYNNLVG 67
           ++++S   ++G I S+   L  I++++LS N LSG IP  + + +  L  LNLS NN  G
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 68  KIP 70
            IP
Sbjct: 133 SIP 135

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 3   QFKSLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
           +   +  +N+S+N L+G IP   F     +  L+LS NN +G IP    S+  L  L+LS
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLS 148

Query: 62  YNNLVGKIP 70
            N L G+IP
Sbjct: 149 NNMLSGEIP 157

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query: 27  NLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS 79
           N  ++ S+DLS  N+SGKI S +  L ++  +NLS N L G IP      S S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSS 119

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 7   LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLV 66
           +Y L++S+N L G I S   ++  ++ L L+ N   G +P    S   L  L+LS N   
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR-LENLDLSRNQFS 488

Query: 67  GKIPTS 72
           G +P  
Sbjct: 489 GAVPRK 494

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +    +L  L++S N L+  +P    NL  + +LDLS N +S  +P ++  L+ L  L+L
Sbjct: 159 LRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSEL 105
           S N+++  + + + L++ S      NK         ES    S L
Sbjct: 217 SNNSIIELLSSLSNLKNLSGLELSNNKLE----DLPESIGNLSNL 257

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
PLN03150	623	hypothetical protein; Provisional	99.74
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.63
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.41
PLN03150	623	hypothetical protein; Provisional	99.33
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.14
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.74
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.67
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.63
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.62
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.58
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.52
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.51
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.47
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.46
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.46
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.45
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.38
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.23
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.19
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.02
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.0
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.93
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.9
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.9
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.89
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.81
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.7
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.56
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.5
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.47
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.04
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.02
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.9
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.82
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.77
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.74
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.08
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.75
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.68
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.37
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.28
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.07
smart00370	26	LRR Leucine-rich repeats, outliers.	95.07
smart00370	26	LRR Leucine-rich repeats, outliers.	94.75
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.75
PRK15386	426	type III secretion protein GogB; Provisional	94.44
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.14
PF15176	102	LRR19-TM: Leucine-rich repeat family 19 TM domain	94.0
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.82
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	92.4
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	91.71
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.38
PRK15386	426	type III secretion protein GogB; Provisional	90.79
KOG2123	388	consensus Uncharacterized conserved protein [Funct	90.7
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	90.7
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	90.65
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	89.95
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.39
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.73
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	87.81
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.39
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	86.76
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	86.69
PF12191	129	stn_TNFRSF12A: Tumour necrosis factor receptor stn	85.54
PF07204	98	Orthoreo_P10: Orthoreovirus membrane fusion protei	83.62
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	83.26

>PLN03150 hypothetical protein; Provisional

Probab=99.74  E-value=1.2e-17  Score=137.55  Aligned_cols=98  Identities=35%  Similarity=0.622  Sum_probs=85.6

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCc--ccCCCC
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTST--QLQSFS   79 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~l~~l~   79 (163)
                      +++++|+.|+|++|.++|.+|..++.+++|+.|++++|+++|.+|..++++++|+.|++++|.++|.+|...  ....+.
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~  518 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA  518 (623)
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence            467899999999999999999999999999999999999999999999999999999999999999988752  234556


Q ss_pred             cccccCCCCCCCCCCCCCCC
Q 031242           80 PTSYEGNKGLYGPPLTNESQ   99 (163)
Q Consensus        80 ~l~~~~n~~lc~~~~~~~c~   99 (163)
                      .+.+.+|+++|+.|....|.
T Consensus       519 ~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        519 SFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             eEEecCCccccCCCCCCCCc
Confidence            78889999999877656674

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.63  E-value=1.2e-15  Score=131.21  Aligned_cols=90  Identities=38%  Similarity=0.648  Sum_probs=53.6

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      ++++|++|++++|.+++.+|..+..+++|+.|++++|+++|.+|..+..+++|+.+++++|++.+.+|....+..+....
T Consensus       521 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~  600 (968)
T PLN00113        521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA  600 (968)
T ss_pred             CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh
Confidence            44555566666666665555555566666666666666665566655556666666666666666555555555555555


Q ss_pred             ccCCCCCCCC
Q 031242           83 YEGNKGLYGP   92 (163)
Q Consensus        83 ~~~n~~lc~~   92 (163)
                      +.||+.+|+.
T Consensus       601 ~~~n~~lc~~  610 (968)
T PLN00113        601 VAGNIDLCGG  610 (968)
T ss_pred             hcCCccccCC
Confidence            6666666653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.41  E-value=9.1e-13  Score=113.56  Aligned_cols=92  Identities=37%  Similarity=0.578  Sum_probs=78.9

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      .++++|+.|++++|.+++.+|..+.++++|+.|++++|.++|.+|..+..+++|+.|++++|++++.+|.. ..+..|+.
T Consensus       496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  575 (968)
T PLN00113        496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ  575 (968)
T ss_pred             hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence            45678888999999998889988999999999999999999999999999999999999999999887765 66788888


Q ss_pred             ccccCCCCCCCCC
Q 031242           81 TSYEGNKGLYGPP   93 (163)
Q Consensus        81 l~~~~n~~lc~~~   93 (163)
                      +++++|+..+..|
T Consensus       576 l~ls~N~l~~~~p  588 (968)
T PLN00113        576 VNISHNHLHGSLP  588 (968)
T ss_pred             EeccCCcceeeCC
Confidence            9999988766443

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=4.2e-12  Score=104.89  Aligned_cols=86  Identities=36%  Similarity=0.571  Sum_probs=79.2

Q ss_pred             CCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcccccC
Q 031242            7 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEG   85 (163)
Q Consensus         7 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~~   85 (163)
                      ++.|+|++|.++|.+|..+..+++|+.|++++|.++|.+|..++.+++|+.|++++|++++.+|.. ..+.+|+.+++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            678999999999999999999999999999999999999999999999999999999999988875 7889999999999


Q ss_pred             CCCCCCC
Q 031242           86 NKGLYGP   92 (163)
Q Consensus        86 n~~lc~~   92 (163)
                      |...+..
T Consensus       500 N~l~g~i  506 (623)
T PLN03150        500 NSLSGRV  506 (623)
T ss_pred             CcccccC
Confidence            9765543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.14  E-value=1.9e-11  Score=71.10  Aligned_cols=61  Identities=46%  Similarity=0.612  Sum_probs=53.6

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL   65 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l   65 (163)
                      ++|++|++++|+++...+..|.++++|++|++++|.++...|..|..+++|+.+++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999944446789999999999999999966667899999999999999975

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.92  E-value=1.5e-10  Score=80.19  Aligned_cols=83  Identities=30%  Similarity=0.532  Sum_probs=49.2

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCc-CC-CCcccCCCCc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK-IP-TSTQLQSFSP   80 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~-~p-~~~~l~~l~~   80 (163)
                      .+.+|++|++++|+++ .+|.+++.++.|+.|++.-|++. .+|..|+.++.|+.||+.+|+++.- .| ++..+..++.
T Consensus        54 ~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra  131 (264)
T KOG0617|consen   54 ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA  131 (264)
T ss_pred             Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence            3556666667777666 66666666666666666666666 6666666666666666666665421 22 2233444444


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      +.++.|.
T Consensus       132 lyl~dnd  138 (264)
T KOG0617|consen  132 LYLGDND  138 (264)
T ss_pred             HHhcCCC
Confidence            4444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=1e-09  Score=76.79  Aligned_cols=83  Identities=30%  Similarity=0.382  Sum_probs=39.2

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhh-cCCCCcccccccCccccCcCC--CCcccCCCC
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNLSYNNLVGKIP--TSTQLQSFS   79 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~-~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~   79 (163)
                      .+.+|+.|++++|.++ .++ .+..++.|+.|++++|.++ .+...+ ..+++|+.|++++|++...-.  ....+++|+
T Consensus        40 ~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             T-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred             hhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence            4678999999999999 564 4788999999999999999 665544 468999999999999975432  235688889


Q ss_pred             cccccCCCC
Q 031242           80 PTSYEGNKG   88 (163)
Q Consensus        80 ~l~~~~n~~   88 (163)
                      .+++.|||.
T Consensus       117 ~L~L~~NPv  125 (175)
T PF14580_consen  117 VLSLEGNPV  125 (175)
T ss_dssp             EEE-TT-GG
T ss_pred             eeeccCCcc
Confidence            999999985

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.88  E-value=2.4e-10  Score=79.14  Aligned_cols=82  Identities=28%  Similarity=0.418  Sum_probs=73.6

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      ++.+.+.|.||+|+++ .+|+.+..+.+|+.|++++|++. .+|.++..++.|+.|+++.|++.-.+..++.++.++.++
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            4566778899999999 99999999999999999999999 999999999999999999999997777778888888887


Q ss_pred             ccCC
Q 031242           83 YEGN   86 (163)
Q Consensus        83 ~~~n   86 (163)
                      +..|
T Consensus       109 ltyn  112 (264)
T KOG0617|consen  109 LTYN  112 (264)
T ss_pred             cccc
Confidence            7665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.87  E-value=2.7e-10  Score=87.82  Aligned_cols=84  Identities=25%  Similarity=0.332  Sum_probs=71.0

Q ss_pred             CCCCCCCeEEccCCCCCCCCCccc-CCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSF-GNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~   80 (163)
                      +++..|.++.++.|++. .+|.+. +++.++..||+.+|+++ ++|++++-+.+|..||+++|.+++.++..+.+ .+..
T Consensus       225 ~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~  301 (565)
T KOG0472|consen  225 PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKF  301 (565)
T ss_pred             CccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeee
Confidence            45555666666777766 666553 48899999999999999 99999999999999999999999999988888 8889


Q ss_pred             ccccCCCC
Q 031242           81 TSYEGNKG   88 (163)
Q Consensus        81 l~~~~n~~   88 (163)
                      +.+.|||.
T Consensus       302 L~leGNPl  309 (565)
T KOG0472|consen  302 LALEGNPL  309 (565)
T ss_pred             hhhcCCch
Confidence            99999975

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.83  E-value=8.2e-10  Score=84.87  Aligned_cols=91  Identities=23%  Similarity=0.228  Sum_probs=80.6

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCC
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFS   79 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~   79 (163)
                      |.+|++|+.|+|++|++++.-+.+|.++.+++.|.|..|++....-..|..+..|++|++.+|+|+..-|.. ..+.++.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            467999999999999999888889999999999999999998444556889999999999999999877755 5677888


Q ss_pred             cccccCCCCCCC
Q 031242           80 PTSYEGNKGLYG   91 (163)
Q Consensus        80 ~l~~~~n~~lc~   91 (163)
                      .+.+.+||+.|.
T Consensus       350 ~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  350 TLNLLSNPFNCN  361 (498)
T ss_pred             eeehccCcccCc
Confidence            999999999996

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.74  E-value=1.7e-09  Score=87.87  Aligned_cols=85  Identities=31%  Similarity=0.391  Sum_probs=67.8

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchh-hcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l   81 (163)
                      .+..|++||||.|++. ..|..+..-+++-.|+||+|++. .+|.. +.+++.|-.||+++|++...+|...++..|..+
T Consensus       101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL  178 (1255)
T ss_pred             ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence            4566778888888888 78887777778888888888887 67765 567888888889999888888888888888888


Q ss_pred             cccCCCCC
Q 031242           82 SYEGNKGL   89 (163)
Q Consensus        82 ~~~~n~~l   89 (163)
                      .+++||..
T Consensus       179 ~Ls~NPL~  186 (1255)
T KOG0444|consen  179 KLSNNPLN  186 (1255)
T ss_pred             hcCCChhh
Confidence            88888753

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.67  E-value=2.2e-09  Score=86.35  Aligned_cols=84  Identities=30%  Similarity=0.339  Sum_probs=54.5

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC----cccCCCC
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS----TQLQSFS   79 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~----~~l~~l~   79 (163)
                      .++|++|+||+|+++...+++|..|.+|+.|+|++|.++...-..|..+++|+.||+++|.++..+.+.    ..+++|+
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr  395 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR  395 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence            456777777777777555556666666666677776666444455666777777777777777666543    3456666


Q ss_pred             cccccCCC
Q 031242           80 PTSYEGNK   87 (163)
Q Consensus        80 ~l~~~~n~   87 (163)
                      .+.+.||.
T Consensus       396 kL~l~gNq  403 (873)
T KOG4194|consen  396 KLRLTGNQ  403 (873)
T ss_pred             heeecCce
Confidence            66666664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.63  E-value=1.3e-08  Score=58.91  Aligned_cols=59  Identities=34%  Similarity=0.450  Sum_probs=51.2

Q ss_pred             cccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcccccCCC
Q 031242           29 KQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEGNK   87 (163)
Q Consensus        29 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~~n~   87 (163)
                      ++|+.|++++|+++..-+..|..+++|+++++++|.+....|.. ..++.++.+++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            47899999999999444467899999999999999999888765 788999999999885

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.62  E-value=6.2e-09  Score=80.45  Aligned_cols=86  Identities=27%  Similarity=0.457  Sum_probs=69.9

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchh------------------------hcCCCCccc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ------------------------LASLNFLSV   57 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~------------------------~~~l~~L~~   57 (163)
                      +.+++|..|+|++|.+. .+|.+++.+..||.||++.|++. .+|..                        +..+.+|.+
T Consensus       432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            46788899999999998 89999999999999999988765 44433                        455778888


Q ss_pred             ccccCccccCcCCCCcccCCCCcccccCCCCC
Q 031242           58 LNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGL   89 (163)
Q Consensus        58 L~l~~N~l~~~~p~~~~l~~l~~l~~~~n~~l   89 (163)
                      ||+.+|.+..+||..+.+++++++.+.|||+-
T Consensus       510 LDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  510 LDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eccCCCchhhCChhhccccceeEEEecCCccC
Confidence            88888888877777788888888888888764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.58  E-value=4.1e-08  Score=53.09  Aligned_cols=37  Identities=41%  Similarity=0.671  Sum_probs=23.1

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCC
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS   42 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~   42 (163)
                      ++|++|++++|+++ .+|+.++++++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35666777777776 56665666666666666666665

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.52  E-value=8.7e-09  Score=86.31  Aligned_cols=86  Identities=37%  Similarity=0.516  Sum_probs=56.9

Q ss_pred             CCCCCCCeEEccCCCCCCCCC-cccCCCcccceeccccccCCCcCchhhc----------------------CCCCcccc
Q 031242            2 GQFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPSQLA----------------------SLNFLSVL   58 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~----------------------~l~~L~~L   58 (163)
                      .++++|++|+|++|+++ .+| ..+.++..|+.|+||+|+|+ .+|..+.                      +++.|+.+
T Consensus       380 ~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~l  457 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVL  457 (1081)
T ss_pred             ccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEE
Confidence            35677888888888888 666 44677788888888888776 6665544                      45566666


Q ss_pred             cccCccccCcC-CCCcccCCCCcccccCCCCC
Q 031242           59 NLSYNNLVGKI-PTSTQLQSFSPTSYEGNKGL   89 (163)
Q Consensus        59 ~l~~N~l~~~~-p~~~~l~~l~~l~~~~n~~l   89 (163)
                      |++.|.++... |....-++|+.+++.||.++
T Consensus       458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             ecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            66666665432 22222267778888888753

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.51  E-value=2.2e-08  Score=80.73  Aligned_cols=67  Identities=24%  Similarity=0.209  Sum_probs=36.5

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP   70 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p   70 (163)
                      |.++++|+|+.|+++..-...+.+|++|+.|++|.|.+....+++|.-.++|++|++++|+++...+
T Consensus       268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~  334 (873)
T KOG4194|consen  268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE  334 (873)
T ss_pred             ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence            4455555555555553333444555555555555555555555555555555555555555555444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.47  E-value=1.3e-08  Score=68.02  Aligned_cols=83  Identities=24%  Similarity=0.325  Sum_probs=69.6

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCC-cccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNL-KQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      ...|+..+|++|.+. ..|+.|... +.++.+++++|.++ .+|.++..++.|+.++++.|.+...+.....+.++..++
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence            356777899999999 788777654 58999999999999 999999999999999999999997776666677777777


Q ss_pred             ccCCCC
Q 031242           83 YEGNKG   88 (163)
Q Consensus        83 ~~~n~~   88 (163)
                      ..+|..
T Consensus       130 s~~na~  135 (177)
T KOG4579|consen  130 SPENAR  135 (177)
T ss_pred             CCCCcc
Confidence            666643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.46  E-value=8.9e-08  Score=51.75  Aligned_cols=39  Identities=41%  Similarity=0.603  Sum_probs=33.7

Q ss_pred             cccceeccccccCCCcCchhhcCCCCcccccccCccccCc
Q 031242           29 KQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK   68 (163)
Q Consensus        29 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~   68 (163)
                      ++|++|++++|+++ .+|..+.++++|+.|++++|+++..
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            47899999999999 7888899999999999999999854

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.46  E-value=2.7e-08  Score=83.47  Aligned_cols=87  Identities=31%  Similarity=0.306  Sum_probs=69.7

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchh-hcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      +..|+.|++.+|.++...-+.+.+.++|+.|+|+.|+|. ++|.. +.++..|+.|++|+|++..++-....+..|..+.
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLR  436 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHh
Confidence            456888999999999877777899999999999999999 88875 7889999999999999986654445555555555


Q ss_pred             ccCCCCCCC
Q 031242           83 YEGNKGLYG   91 (163)
Q Consensus        83 ~~~n~~lc~   91 (163)
                      ..+|...|-
T Consensus       437 ahsN~l~~f  445 (1081)
T KOG0618|consen  437 AHSNQLLSF  445 (1081)
T ss_pred             hcCCceeec
Confidence            566655553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.45  E-value=3.9e-08  Score=68.87  Aligned_cols=81  Identities=30%  Similarity=0.400  Sum_probs=27.8

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccC-CCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFG-NLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      +..++++|+|++|.++ .+. .++ .+.+|+.|++++|.++ .++ .+..+++|++|++++|+++...+.. ..+++|..
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            3456899999999999 554 455 5889999999999999 554 4778999999999999999764433 35788999


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      +.+++|.
T Consensus        93 L~L~~N~   99 (175)
T PF14580_consen   93 LYLSNNK   99 (175)
T ss_dssp             EE-TTS-
T ss_pred             EECcCCc
Confidence            9998885

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.38  E-value=2.4e-08  Score=81.40  Aligned_cols=81  Identities=27%  Similarity=0.375  Sum_probs=38.8

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCcccc--CcCCCCcccCCCCcc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLV--GKIPTSTQLQSFSPT   81 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~--~~~p~~~~l~~l~~l   81 (163)
                      +.+|+.|+||+|.++ .+.-..+.+.+|++|++|+|+++ .+|..++.++.|+.|.+.+|++.  |++...+.+..|+.+
T Consensus       244 l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf  321 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF  321 (1255)
T ss_pred             hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence            334444444444444 33333344444455555555555 55555555555555555555432  333333455555554


Q ss_pred             cccCC
Q 031242           82 SYEGN   86 (163)
Q Consensus        82 ~~~~n   86 (163)
                      ....|
T Consensus       322 ~aanN  326 (1255)
T KOG0444|consen  322 HAANN  326 (1255)
T ss_pred             Hhhcc
Confidence            44444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.23  E-value=1.3e-07  Score=70.96  Aligned_cols=62  Identities=32%  Similarity=0.370  Sum_probs=47.8

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK   68 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~   68 (163)
                      .+.|+++|||+|.++ .+.++.+-++.++.|++|+|.+. .+-. +..+++|+.||+++|.++..
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~  344 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAEC  344 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHhh
Confidence            456788888888888 77777888888888888888887 4433 67788888888888877643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.19  E-value=5.3e-07  Score=77.25  Aligned_cols=83  Identities=33%  Similarity=0.420  Sum_probs=68.5

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      ..++.|++|||++|.=-+.+|+.++.|-+|++|++++..++ .+|..+.++..|.+||+..+.-...+|.. ..+++|+.
T Consensus       568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence            35889999999998766699999999999999999999999 89999999999999999988765555555 34777777


Q ss_pred             ccccC
Q 031242           81 TSYEG   85 (163)
Q Consensus        81 l~~~~   85 (163)
                      +.+..
T Consensus       647 L~l~~  651 (889)
T KOG4658|consen  647 LRLPR  651 (889)
T ss_pred             EEeec
Confidence            66543

>PLN03210 Resistant to P

Probab=98.05  E-value=1.3e-05  Score=71.12  Aligned_cols=84  Identities=23%  Similarity=0.299  Sum_probs=46.9

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      .+++|+.|+|+++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|....+.+|..+.
T Consensus       632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~  710 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN  710 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence            355566666665543324443 5556666666666654444666666666666666666654333444433455666666


Q ss_pred             ccCCC
Q 031242           83 YEGNK   87 (163)
Q Consensus        83 ~~~n~   87 (163)
                      +.+|.
T Consensus       711 Lsgc~  715 (1153)
T PLN03210        711 LSGCS  715 (1153)
T ss_pred             CCCCC
Confidence            65554

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.02  E-value=1e-06  Score=66.27  Aligned_cols=59  Identities=27%  Similarity=0.336  Sum_probs=40.9

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL   65 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l   65 (163)
                      ++.++.|++|+|.+. .+.. +..+.+|+.||+|+|.++ ++-..-..+.+.++|+++.|.+
T Consensus       306 ~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i  364 (490)
T KOG1259|consen  306 APKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI  364 (490)
T ss_pred             ccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH
Confidence            567889999999988 5544 788899999999999887 4444333444444444444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.01  E-value=5.8e-06  Score=69.98  Aligned_cols=56  Identities=25%  Similarity=0.216  Sum_probs=33.2

Q ss_pred             ccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccccCCCCC
Q 031242           30 QIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGL   89 (163)
Q Consensus        30 ~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~~n~~l   89 (163)
                      +|+.|++++|+++ .+|..   ..+|+.|++++|+++.++.....+..+..+++++|+.-
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence            4455555555555 34432   23456667777777654444456777777888888754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.00  E-value=5.2e-07  Score=72.63  Aligned_cols=80  Identities=31%  Similarity=0.377  Sum_probs=43.9

Q ss_pred             CCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCC----------------------CcccccccCcc
Q 031242            7 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLN----------------------FLSVLNLSYNN   64 (163)
Q Consensus         7 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~----------------------~L~~L~l~~N~   64 (163)
                      |++|-+++|+++ .+|+.++.+.+|..||.+.|.+. .+|..++.+.                      .|..||++.|+
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNk  222 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNK  222 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCc
Confidence            444445555555 44544444444444444444444 3444333332                      34566667777


Q ss_pred             ccCcCCCCcccCCCCcccccCCCC
Q 031242           65 LVGKIPTSTQLQSFSPTSYEGNKG   88 (163)
Q Consensus        65 l~~~~p~~~~l~~l~~l~~~~n~~   88 (163)
                      ++.++-.+..++.|+.+.+..||.
T Consensus       223 is~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  223 ISYLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             eeecchhhhhhhhheeeeeccCCC
Confidence            765555566677777777777764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.97  E-value=4.4e-06  Score=65.59  Aligned_cols=80  Identities=34%  Similarity=0.513  Sum_probs=52.7

Q ss_pred             CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccccC
Q 031242            6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEG   85 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~~   85 (163)
                      +|+.|+++.|.+. .+|..++.++.|+.|+++.|+++ .+|...+..+.|+.+++++|+++..++.......+..+.+.+
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN  218 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC
Confidence            5677777777777 66666667777777777777777 666655566777777777777775554433444566666666


Q ss_pred             CC
Q 031242           86 NK   87 (163)
Q Consensus        86 n~   87 (163)
                      |.
T Consensus       219 N~  220 (394)
T COG4886         219 NS  220 (394)
T ss_pred             Cc
Confidence            63

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.93  E-value=2.6e-06  Score=66.85  Aligned_cols=82  Identities=29%  Similarity=0.507  Sum_probs=37.6

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      .++.|+.|+++.|+++ .+|.....++.|+.|++++|+++ .+|........|+.+.+++|.+...+.....+..+..+.
T Consensus       161 ~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~  238 (394)
T COG4886         161 NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE  238 (394)
T ss_pred             ccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence            3445555555555555 44444444555555555555555 444444344445555555553332333333333333333


Q ss_pred             ccCC
Q 031242           83 YEGN   86 (163)
Q Consensus        83 ~~~n   86 (163)
                      +..|
T Consensus       239 l~~n  242 (394)
T COG4886         239 LSNN  242 (394)
T ss_pred             cCCc
Confidence            3333

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.91  E-value=7.1e-06  Score=69.46  Aligned_cols=62  Identities=31%  Similarity=0.350  Sum_probs=51.1

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT   71 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~   71 (163)
                      ++|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|..+..+++|+.+++++|++++..+.
T Consensus       402 s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        402 SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             cCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            35677777777777 46653   346888999999999 8999999999999999999999987654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.90  E-value=2e-06  Score=66.66  Aligned_cols=84  Identities=24%  Similarity=0.281  Sum_probs=61.4

Q ss_pred             CCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccc-cCccccCcCCCC-cccCCCCccccc
Q 031242            7 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL-SYNNLVGKIPTS-TQLQSFSPTSYE   84 (163)
Q Consensus         7 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l-~~N~l~~~~p~~-~~l~~l~~l~~~   84 (163)
                      -.+++|..|+|+...|.+|+.+++|+.||||+|.|+-.-|..|..+.+|..|-+ ++|+|+..+... ..+..+..+.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            456899999999444467899999999999999999777888988888766555 458888666443 455555555555


Q ss_pred             CCCCCC
Q 031242           85 GNKGLY   90 (163)
Q Consensus        85 ~n~~lc   90 (163)
                      .|.-.|
T Consensus       149 an~i~C  154 (498)
T KOG4237|consen  149 ANHINC  154 (498)
T ss_pred             hhhhcc
Confidence            554444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.90  E-value=8.3e-07  Score=73.44  Aligned_cols=85  Identities=27%  Similarity=0.250  Sum_probs=54.0

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC--CCcccCCCCcc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSPT   81 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~~l   81 (163)
                      |++|+.|||++|.+. .+|.--..-.+|+.|.+++|.++ .+ ..+.++.+|+.||+++|-|.+--.  ....+..|+.+
T Consensus       208 l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L  284 (1096)
T KOG1859|consen  208 LPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL  284 (1096)
T ss_pred             cccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence            455666666666666 55542111223666666666655 22 235678888999999998775322  22456777889


Q ss_pred             cccCCCCCCC
Q 031242           82 SYEGNKGLYG   91 (163)
Q Consensus        82 ~~~~n~~lc~   91 (163)
                      .+.|||-.|.
T Consensus       285 ~LeGNPl~c~  294 (1096)
T KOG1859|consen  285 WLEGNPLCCA  294 (1096)
T ss_pred             hhcCCccccC
Confidence            9999998886

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.89  E-value=1.9e-05  Score=66.92  Aligned_cols=56  Identities=30%  Similarity=0.535  Sum_probs=23.3

Q ss_pred             CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccC
Q 031242            6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVG   67 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~   67 (163)
                      +|+.|++++|+++ .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++++|++..
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~  276 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC  276 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc
Confidence            3444444444444 3333221  23444444444444 3343322  245555555555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.85  E-value=9.1e-06  Score=68.76  Aligned_cols=57  Identities=33%  Similarity=0.528  Sum_probs=27.4

Q ss_pred             CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCc
Q 031242            6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK   68 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~   68 (163)
                      +|+.|++++|.++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++..
T Consensus       326 sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~L  382 (754)
T PRK15370        326 GLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL  382 (754)
T ss_pred             cceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCC
Confidence            4555555555555 3444332  44555555555554 3444332  3445555555554433

>PLN03210 Resistant to P

Probab=97.81  E-value=5.5e-05  Score=67.18  Aligned_cols=86  Identities=20%  Similarity=0.210  Sum_probs=58.5

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTS   82 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~   82 (163)
                      +.+|+.|++++|++. .+|..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|. ...+.+|+.++
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            356777777777777 6777777788888888877654446664 66778888888887654444443 36677777777


Q ss_pred             ccCCCCCCC
Q 031242           83 YEGNKGLYG   91 (163)
Q Consensus        83 ~~~n~~lc~   91 (163)
                      +.++..+-.
T Consensus       688 L~~c~~L~~  696 (1153)
T PLN03210        688 MSRCENLEI  696 (1153)
T ss_pred             CCCCCCcCc
Confidence            777654433

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.74  E-value=5.5e-06  Score=66.92  Aligned_cols=82  Identities=24%  Similarity=0.353  Sum_probs=70.8

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l   81 (163)
                      +++..|+.+||+.|+++ .+|..+-.++ |+.|-+++|+++ .+|..++.+..|..||.+.|++...++....+.+++.+
T Consensus       118 ~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l  194 (722)
T KOG0532|consen  118 CNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDL  194 (722)
T ss_pred             hhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHH
Confidence            46788999999999999 8998877776 789999999999 99999999999999999999999888877777777666


Q ss_pred             cccCC
Q 031242           82 SYEGN   86 (163)
Q Consensus        82 ~~~~n   86 (163)
                      .+..|
T Consensus       195 ~vrRn  199 (722)
T KOG0532|consen  195 NVRRN  199 (722)
T ss_pred             HHhhh
Confidence            66555

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.71  E-value=2.3e-05  Score=62.16  Aligned_cols=81  Identities=30%  Similarity=0.358  Sum_probs=45.4

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l   81 (163)
                      +.+++|+.|++.+|++. .+...+..+++|++|+++.|.|+...+  +..++.|+.|++++|.++.. .....+..+..+
T Consensus        92 ~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~-~~~~~l~~L~~l  167 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI-SGLESLKSLKLL  167 (414)
T ss_pred             ccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc-cCCccchhhhcc
Confidence            34566667777777776 444435566777777777777663222  34455566666666666632 222234444444


Q ss_pred             cccCC
Q 031242           82 SYEGN   86 (163)
Q Consensus        82 ~~~~n   86 (163)
                      ++++|
T Consensus       168 ~l~~n  172 (414)
T KOG0531|consen  168 DLSYN  172 (414)
T ss_pred             cCCcc
Confidence            44444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.70  E-value=3.8e-05  Score=54.66  Aligned_cols=83  Identities=18%  Similarity=0.193  Sum_probs=61.8

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcC--CCCcccCCCCcc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI--PTSTQLQSFSPT   81 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~--p~~~~l~~l~~l   81 (163)
                      +.+...+||++|.+. .++ .|..++.|.+|.+..|.|+..-|.--.-+++|+.|.+.+|.|....  .....++.|+.+
T Consensus        41 ~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            346678899999887 443 3677888999999999999555654445677999999999887443  233567788888


Q ss_pred             cccCCCC
Q 031242           82 SYEGNKG   88 (163)
Q Consensus        82 ~~~~n~~   88 (163)
                      ++.+|+-
T Consensus       119 tll~Npv  125 (233)
T KOG1644|consen  119 TLLGNPV  125 (233)
T ss_pred             eecCCch
Confidence            8888874

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.67  E-value=4.5e-06  Score=56.06  Aligned_cols=64  Identities=25%  Similarity=0.396  Sum_probs=57.9

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcC
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI   69 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~   69 (163)
                      ++.++.+++++|.++ .+|.++..++.|+.|+++.|.+. ..|.-+..+.++..|+..+|.+..++
T Consensus        76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen   76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCc
Confidence            456788999999999 99999999999999999999999 88998888999999999999887443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.67  E-value=6.1e-06  Score=62.61  Aligned_cols=15  Identities=40%  Similarity=0.392  Sum_probs=6.9

Q ss_pred             CCCcccccccCcccc
Q 031242           52 LNFLSVLNLSYNNLV   66 (163)
Q Consensus        52 l~~L~~L~l~~N~l~   66 (163)
                      .++|+.|++++|.+.
T Consensus       192 ~~~L~~L~L~~n~i~  206 (319)
T cd00116         192 NCNLEVLDLNNNGLT  206 (319)
T ss_pred             CCCCCEEeccCCccC
Confidence            334444444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.56  E-value=7e-06  Score=62.28  Aligned_cols=38  Identities=29%  Similarity=0.329  Sum_probs=15.7

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcc---cceeccccccCC
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQ---IESLDLSMNNLS   42 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~ls~N~l~   42 (163)
                      ++|+.|++++|.+.+..+..+..+.+   |++|++++|.++
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence            34444444444444333333332222   444444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.50  E-value=6.3e-06  Score=68.44  Aligned_cols=77  Identities=31%  Similarity=0.362  Sum_probs=33.0

Q ss_pred             CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccccC
Q 031242            6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEG   85 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~~   85 (163)
                      .++.|||+.|+++ ... .+..+++|.+||++.|.+. .+|.--..--.|+.|++++|.++.. -...++.+|..++++.
T Consensus       188 ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  188 ALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSY  263 (1096)
T ss_pred             Hhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh-hhHHhhhhhhccchhH
Confidence            3444455555444 222 3444444555555555444 3333211111244444555444421 1223455555555555


Q ss_pred             C
Q 031242           86 N   86 (163)
Q Consensus        86 n   86 (163)
                      |
T Consensus       264 N  264 (1096)
T KOG1859|consen  264 N  264 (1096)
T ss_pred             h
Confidence            5

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.47  E-value=5.7e-05  Score=65.09  Aligned_cols=88  Identities=26%  Similarity=0.255  Sum_probs=72.9

Q ss_pred             CCCCCeEEccCCC--CCCCCCcc-cCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCc
Q 031242            4 FKSLYALNMSHNA--LTGSIPSS-FGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP   80 (163)
Q Consensus         4 l~~L~~L~Ls~N~--l~~~~p~~-~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~   80 (163)
                      .+.|++|-+..|.  +. .++.. |..++.|+.||+++|.=-+.+|..++++-+|++|++++..++..|+....++.|.+
T Consensus       544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence            4568888888886  55 55544 77899999999999876669999999999999999999999988888888999999


Q ss_pred             ccccCCCCCCCC
Q 031242           81 TSYEGNKGLYGP   92 (163)
Q Consensus        81 l~~~~n~~lc~~   92 (163)
                      +++..+..+...
T Consensus       623 Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  623 LNLEVTGRLESI  634 (889)
T ss_pred             eccccccccccc
Confidence            988776654443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.04  E-value=0.00017  Score=32.74  Aligned_cols=19  Identities=63%  Similarity=0.781  Sum_probs=9.5

Q ss_pred             CCeEEccCCCCCCCCCcccC
Q 031242            7 LYALNMSHNALTGSIPSSFG   26 (163)
Q Consensus         7 L~~L~Ls~N~l~~~~p~~~~   26 (163)
                      |++||+++|+++ .+|+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.02  E-value=0.00017  Score=57.25  Aligned_cols=81  Identities=33%  Similarity=0.445  Sum_probs=64.2

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~   83 (163)
                      +..++.+++..|.+. .+-..+..+.+|..+++.+|.+. .+...+..+++|++|++++|.|+...+ ...+..|..+++
T Consensus        71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc-hhhccchhhhee
Confidence            456667778888888 44455788999999999999999 555546789999999999999996543 345566888889


Q ss_pred             cCCC
Q 031242           84 EGNK   87 (163)
Q Consensus        84 ~~n~   87 (163)
                      .+|+
T Consensus       148 ~~N~  151 (414)
T KOG0531|consen  148 SGNL  151 (414)
T ss_pred             ccCc
Confidence            9985

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.91  E-value=0.00079  Score=48.11  Aligned_cols=84  Identities=23%  Similarity=0.212  Sum_probs=59.7

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCc--hhhcCCCCcccccccCccccCcCCC----Ccc
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP--SQLASLNFLSVLNLSYNNLVGKIPT----STQ   74 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~~L~l~~N~l~~~~p~----~~~   74 (163)
                      |..++.|+.|.+++|+|+..-|.--.-++.|..|.+.+|.+. .+-  ..+..++.|+.|.+-+|+.+...--    ...
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k  138 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK  138 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence            456888999999999999444443445678999999999987 332  2356778999999999987643211    134


Q ss_pred             cCCCCcccccC
Q 031242           75 LQSFSPTSYEG   85 (163)
Q Consensus        75 l~~l~~l~~~~   85 (163)
                      +++++.+++.+
T Consensus       139 lp~l~~LDF~k  149 (233)
T KOG1644|consen  139 LPSLRTLDFQK  149 (233)
T ss_pred             cCcceEeehhh
Confidence            56667777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.90  E-value=0.00068  Score=49.94  Aligned_cols=62  Identities=24%  Similarity=0.319  Sum_probs=32.4

Q ss_pred             CCCCCCeEEccCC--CCCCCCCcccCCCcccceeccccccCCCcCchh---hcCCCCcccccccCcccc
Q 031242            3 QFKSLYALNMSHN--ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ---LASLNFLSVLNLSYNNLV   66 (163)
Q Consensus         3 ~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~---~~~l~~L~~L~l~~N~l~   66 (163)
                      .|++|+.|.+|.|  ++.+.++.....+++|+++++++|++.-  +++   ...+.+|..|++.+|.-+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            4555666666666  4444444444445666666666666541  222   233445555565555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.84  E-value=0.00076  Score=49.72  Aligned_cols=80  Identities=25%  Similarity=0.319  Sum_probs=53.8

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccc--cCCCcCchhhcCCCCcccccccCccccC--cCCCCcccCCCCc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN--NLSGKIPSQLASLNFLSVLNLSYNNLVG--KIPTSTQLQSFSP   80 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N--~l~g~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~~~l~~l~~   80 (163)
                      ..|+.+.+.+-.++ ++ ..+..|++|+.|+++.|  ..++.++.....+++|++++++.|++.-  .++....+.+|..
T Consensus        43 ~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            34555555555555 22 34667899999999999  7777777666677999999999999873  2222344555555


Q ss_pred             ccccCC
Q 031242           81 TSYEGN   86 (163)
Q Consensus        81 l~~~~n   86 (163)
                      +++..+
T Consensus       121 Ldl~n~  126 (260)
T KOG2739|consen  121 LDLFNC  126 (260)
T ss_pred             hhcccC
Confidence            555433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.82  E-value=0.00038  Score=31.55  Aligned_cols=21  Identities=52%  Similarity=0.759  Sum_probs=14.9

Q ss_pred             ccceeccccccCCCcCchhhcC
Q 031242           30 QIESLDLSMNNLSGKIPSQLAS   51 (163)
Q Consensus        30 ~L~~L~ls~N~l~g~~p~~~~~   51 (163)
                      +|++||+++|+++ .+|.+|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677788888777 77766544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.00063  Score=53.67  Aligned_cols=61  Identities=28%  Similarity=0.405  Sum_probs=30.4

Q ss_pred             CCCCeEEccCCCCCCCCC--cccCCCcccceeccccccCCCc-Cchh-----hcCCCCcccccccCcccc
Q 031242            5 KSLYALNMSHNALTGSIP--SSFGNLKQIESLDLSMNNLSGK-IPSQ-----LASLNFLSVLNLSYNNLV   66 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~ls~N~l~g~-~p~~-----~~~l~~L~~L~l~~N~l~   66 (163)
                      ..|++|||++|.+- ..+  ...+.++.|+.|+++.+.+... .|+.     ...+++|+.|++..|++.
T Consensus       246 ~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  246 QTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            34555555555544 333  3344555555555555555421 2222     234556666666666553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.00062  Score=53.70  Aligned_cols=85  Identities=26%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCc--hhhcCCCCcccccccCccccCcC-CCC------c
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP--SQLASLNFLSVLNLSYNNLVGKI-PTS------T   73 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~~L~l~~N~l~~~~-p~~------~   73 (163)
                      .+++|+.|+|+.|...+.-......+..|+.|||++|++- ..+  ...+.++.|..|+++.+.+...- |+.      .
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH  298 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence            4677778888887532233334456777888888888776 444  34667788888888888776432 222      3


Q ss_pred             ccCCCCcccccCCCC
Q 031242           74 QLQSFSPTSYEGNKG   88 (163)
Q Consensus        74 ~l~~l~~l~~~~n~~   88 (163)
                      .+.+++.+....|+.
T Consensus       299 ~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  299 TFPKLEYLNISENNI  313 (505)
T ss_pred             ccccceeeecccCcc
Confidence            456666666666643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.08  E-value=0.0037  Score=26.39  Aligned_cols=13  Identities=46%  Similarity=0.662  Sum_probs=5.9

Q ss_pred             CCCeEEccCCCCC
Q 031242            6 SLYALNMSHNALT   18 (163)
Q Consensus         6 ~L~~L~Ls~N~l~   18 (163)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4566666666655

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.81  E-value=0.0018  Score=48.67  Aligned_cols=65  Identities=23%  Similarity=0.284  Sum_probs=50.8

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCch--hhcCCCCcccccccCccccCcCC
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPS--QLASLNFLSVLNLSYNNLVGKIP   70 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~--~~~~l~~L~~L~l~~N~l~~~~p   70 (163)
                      +++.|++|.||-|+++..-|  +..++.|+.|+|..|.|. .+-+  -+.++++|+.|.+..|.-.|.-+
T Consensus        39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAG  105 (388)
T ss_pred             hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccc
Confidence            57889999999999994333  568899999999999887 4432  36788999999999998765543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.75  E-value=0.0072  Score=45.93  Aligned_cols=62  Identities=34%  Similarity=0.319  Sum_probs=27.2

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCc-CchhhcCCCCcccccccCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK-IPSQLASLNFLSVLNLSYNN   64 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~L~l~~N~   64 (163)
                      +|+.|++|+++.|++...+...-..+.+|+.|-|.+..+... ....+..++.++.++++.|.
T Consensus        95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen   95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            344555555555555433222212334444444444433321 11223445555666666663

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.68  E-value=0.00049  Score=50.37  Aligned_cols=55  Identities=15%  Similarity=0.140  Sum_probs=27.2

Q ss_pred             eEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccc
Q 031242            9 ALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL   65 (163)
Q Consensus         9 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l   65 (163)
                      .||++.|.+. ..|..++++..+..+++..|.++ ..|.++...+.++.++...|.+
T Consensus        69 rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   69 RLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             HHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence            3444444444 44444455555555555555554 4555555555555555554443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=0.0025  Score=48.39  Aligned_cols=62  Identities=29%  Similarity=0.369  Sum_probs=41.4

Q ss_pred             CCCCCeEEccCCCCCC--CCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccc
Q 031242            4 FKSLYALNMSHNALTG--SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL   65 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l   65 (163)
                      .+.++++||.+|.++.  .+-..+.++++|++|+++.|+++..+-..-..+.+|+++-+.+..+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            4567788888888873  2344567888888888888888743322213556777777666544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.28  E-value=0.015  Score=49.33  Aligned_cols=60  Identities=23%  Similarity=0.378  Sum_probs=28.0

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCC-cCchhhcCCCCcccccccCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNLSYNN   64 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~   64 (163)
                      ++++|..||+|+-+++ .+ .++++|++|+.|.+.+=.+.. ..-..+.++++|++||+|...
T Consensus       171 sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             ccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            3455555555555554 22 444555555555444433321 111234455566666665543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.07  E-value=0.021  Score=26.65  Aligned_cols=18  Identities=39%  Similarity=0.685  Sum_probs=9.5

Q ss_pred             CCCCeEEccCCCCCCCCCc
Q 031242            5 KSLYALNMSHNALTGSIPS   23 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~   23 (163)
                      ++|+.|+|++|+++ .+|+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45555555555555 4443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.07  E-value=0.021  Score=26.65  Aligned_cols=18  Identities=39%  Similarity=0.685  Sum_probs=9.5

Q ss_pred             CCCCeEEccCCCCCCCCCc
Q 031242            5 KSLYALNMSHNALTGSIPS   23 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~   23 (163)
                      ++|+.|+|++|+++ .+|+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45555555555555 4443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.75  E-value=0.025  Score=26.36  Aligned_cols=20  Identities=45%  Similarity=0.680  Sum_probs=12.5

Q ss_pred             CcccceeccccccCCCcCchh
Q 031242           28 LKQIESLDLSMNNLSGKIPSQ   48 (163)
Q Consensus        28 l~~L~~L~ls~N~l~g~~p~~   48 (163)
                      +++|++|++++|.++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            345667777777776 55544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.75  E-value=0.025  Score=26.36  Aligned_cols=20  Identities=45%  Similarity=0.680  Sum_probs=12.5

Q ss_pred             CcccceeccccccCCCcCchh
Q 031242           28 LKQIESLDLSMNNLSGKIPSQ   48 (163)
Q Consensus        28 l~~L~~L~ls~N~l~g~~p~~   48 (163)
                      +++|++|++++|.++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            345667777777776 55544

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.44  E-value=0.06  Score=42.89  Aligned_cols=53  Identities=17%  Similarity=0.280  Sum_probs=32.1

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceecccc-ccCCCcCchhhcCCCCcccccccCc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSM-NNLSGKIPSQLASLNFLSVLNLSYN   63 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l~~L~~L~l~~N   63 (163)
                      +.+++.|++++|.++ .+|.   -..+|+.|.+++ +.++ .+|+.+.  ++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence            567888888888877 6662   223567777765 4444 5554432  35555666555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.14  E-value=0.022  Score=48.33  Aligned_cols=82  Identities=21%  Similarity=0.276  Sum_probs=49.6

Q ss_pred             CCCCCeEEccCCCCCC-CCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCc--CCCCcccCCCCc
Q 031242            4 FKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK--IPTSTQLQSFSP   80 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~~l~~l~~   80 (163)
                      ||.|+.|.+++-.+.. ..-....++++|..||+|+.+++ .+ ..++.+++|+.|.+.+=.+..-  +-+...+++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            6667777766655532 22344456777777788777776 33 5567777777776665444321  112355777777


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      ++++...
T Consensus       225 LDIS~~~  231 (699)
T KOG3665|consen  225 LDISRDK  231 (699)
T ss_pred             eeccccc
Confidence            7776543

>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain

Probab=94.00  E-value=0.14  Score=32.27  Aligned_cols=39  Identities=15%  Similarity=0.143  Sum_probs=25.9

Q ss_pred             eeehhhhHHhHHHHHHHHHhhhhHHHHHHHHHHhHhcee
Q 031242          122 IAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRR  160 (163)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (163)
                      +...+|+++++++..+++++..+...||+-+..+.++++
T Consensus        17 W~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL   55 (102)
T PF15176_consen   17 WPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRL   55 (102)
T ss_pred             cHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccC
Confidence            444556655555555555666677888888888877664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.82  E-value=0.0017  Score=47.58  Aligned_cols=83  Identities=19%  Similarity=0.215  Sum_probs=68.7

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      .+...++||++.|++. .+-..+.-++.+..||++.|++. ..|..+.++..+..+++.+|..+..|-...+.+.+..+.
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            4566788999999988 77777888999999999999999 899999999999999999999887666666777776666


Q ss_pred             ccCCC
Q 031242           83 YEGNK   87 (163)
Q Consensus        83 ~~~n~   87 (163)
                      .-+|+
T Consensus       118 ~k~~~  122 (326)
T KOG0473|consen  118 QKKTE  122 (326)
T ss_pred             hccCc
Confidence            66654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=92.40  E-value=0.037  Score=42.76  Aligned_cols=85  Identities=18%  Similarity=0.221  Sum_probs=36.9

Q ss_pred             CCCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCCcCchhh-----cCCCCcccccccCccccCcCC----
Q 031242            4 FKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKIPSQL-----ASLNFLSVLNLSYNNLVGKIP----   70 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~~p~~~-----~~l~~L~~L~l~~N~l~~~~p----   70 (163)
                      +++|++|||..|.|+-.    +...+..+++|+.+++++..+...--..+     ...++|+.+++++|.++.---    
T Consensus       212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la  291 (382)
T KOG1909|consen  212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA  291 (382)
T ss_pred             CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence            44555555555555421    12233444555555555554432211111     123455555555555541100    


Q ss_pred             -CCcccCCCCcccccCCCC
Q 031242           71 -TSTQLQSFSPTSYEGNKG   88 (163)
Q Consensus        71 -~~~~l~~l~~l~~~~n~~   88 (163)
                       .....+.|..+.+++|..
T Consensus       292 ~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  292 ACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhcchhhHHhcCCcccc
Confidence             012244555566666643

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=91.71  E-value=0.18  Score=26.31  Aligned_cols=19  Identities=11%  Similarity=0.058  Sum_probs=8.6

Q ss_pred             eeehhhhHHhHHHHHHHHH
Q 031242          122 IAMSIGFAVGFGAVVSPLM  140 (163)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~  140 (163)
                      .++++.+++++.++..+++
T Consensus        15 ~~VvVPV~vI~~vl~~~l~   33 (40)
T PF08693_consen   15 VGVVVPVGVIIIVLGAFLF   33 (40)
T ss_pred             EEEEechHHHHHHHHHHhh
Confidence            3444554444444444444

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.38  E-value=0.14  Score=24.04  Aligned_cols=17  Identities=59%  Similarity=0.780  Sum_probs=9.1

Q ss_pred             CCCeEEccCCCCCCCCCc
Q 031242            6 SLYALNMSHNALTGSIPS   23 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~~~p~   23 (163)
                      +|+.|+.++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4555555555555 4443

>PRK15386 type III secretion protein GogB; Provisional

Probab=90.79  E-value=0.28  Score=39.20  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=16.1

Q ss_pred             CCCeEEccC-CCCCCCCCcccCCCcccceeccccc
Q 031242            6 SLYALNMSH-NALTGSIPSSFGNLKQIESLDLSMN   39 (163)
Q Consensus         6 ~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ls~N   39 (163)
                      +|+.|.+++ +.++ .+|..+  ..+|+.|++++|
T Consensus        73 sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         73 ELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             CCcEEEccCCCCcc-cCCchh--hhhhhheEccCc
Confidence            466666665 3444 455433  235555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.70  E-value=0.011  Score=44.52  Aligned_cols=80  Identities=25%  Similarity=0.227  Sum_probs=60.2

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC--CcccCCCCcc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT--STQLQSFSPT   81 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~l~~l~~l   81 (163)
                      +.+.+.|+.-++.++ .+ +....++.|+.|.||-|+++..-|  +..+++|+.|.|..|.|...-.-  ...+++|+.+
T Consensus        18 l~~vkKLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCcc-HH-HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            445667777777777 43 234678999999999999984333  56889999999999998754321  2567788889


Q ss_pred             cccCCC
Q 031242           82 SYEGNK   87 (163)
Q Consensus        82 ~~~~n~   87 (163)
                      .+..||
T Consensus        94 WL~ENP   99 (388)
T KOG2123|consen   94 WLDENP   99 (388)
T ss_pred             hhccCC
Confidence            998887

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=90.70  E-value=0.066  Score=41.45  Aligned_cols=42  Identities=29%  Similarity=0.305  Sum_probs=18.9

Q ss_pred             cCCCcccceeccccccCCCc----CchhhcCCCCcccccccCcccc
Q 031242           25 FGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLV   66 (163)
Q Consensus        25 ~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~   66 (163)
                      +..+++|+.||+.+|.++-.    +-..+..+++|+.++++++.++
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            34445555555555554421    1112334445555555554443

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=90.65  E-value=0.12  Score=33.98  Aligned_cols=25  Identities=12%  Similarity=0.357  Sum_probs=14.7

Q ss_pred             eeeeehhhhHHhHHHHHHHHHhhhh
Q 031242          120 FFIAMSIGFAVGFGAVVSPLMFSVQ  144 (163)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~  144 (163)
                      .++++++|+++++++++++++|+.+
T Consensus        65 ~i~~Ii~gv~aGvIg~Illi~y~ir   89 (122)
T PF01102_consen   65 AIIGIIFGVMAGVIGIILLISYCIR   89 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeehhHHHHHHHHHHHHHHHHHHH
Confidence            4556667777766666655554433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=89.95  E-value=0.3  Score=22.96  Aligned_cols=14  Identities=29%  Similarity=0.501  Sum_probs=8.6

Q ss_pred             CCCCeEEccCCCCC
Q 031242            5 KSLYALNMSHNALT   18 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~   18 (163)
                      ++|+.|+++.|+++
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45666666666665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.39  E-value=0.63  Score=30.14  Aligned_cols=80  Identities=11%  Similarity=0.161  Sum_probs=39.3

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      .++.+|+.+.+.. .+...-...|.+.++|+.+.+.++ +...-...|....+++.+++.+ .+....... .....+..
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            4566788888774 455333355777878888888775 5523334567776788888865 332222222 23455555


Q ss_pred             cccc
Q 031242           81 TSYE   84 (163)
Q Consensus        81 l~~~   84 (163)
                      +.+.
T Consensus        86 i~~~   89 (129)
T PF13306_consen   86 IDIP   89 (129)
T ss_dssp             EEET
T ss_pred             cccC
Confidence            5553

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.73  E-value=0.18  Score=22.88  Aligned_cols=14  Identities=36%  Similarity=0.560  Sum_probs=5.5

Q ss_pred             CCCCeEEccCCCCC
Q 031242            5 KSLYALNMSHNALT   18 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~   18 (163)
                      ++|+.|++++|.++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34444555444443

...

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=87.81  E-value=0.47  Score=22.50  Aligned_cols=14  Identities=43%  Similarity=0.536  Sum_probs=8.1

Q ss_pred             CCCCeEEccCCCCC
Q 031242            5 KSLYALNMSHNALT   18 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~   18 (163)
                      ++|++|||++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            34566666666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=87.39  E-value=0.82  Score=29.58  Aligned_cols=60  Identities=25%  Similarity=0.331  Sum_probs=37.3

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN   63 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N   63 (163)
                      .++++|+.+.+..+ +...-...|.+..+++.+.+.+ .+...-...|...++++.+++..+
T Consensus        32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred             cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence            45678999999875 6623335677888899999976 444233445677899999988765

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=86.76  E-value=0.46  Score=29.93  Aligned_cols=21  Identities=19%  Similarity=0.252  Sum_probs=11.5

Q ss_pred             eeeeehhhhHHhHHHHHHHHH
Q 031242          120 FFIAMSIGFAVGFGAVVSPLM  140 (163)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~  140 (163)
                      .++++++++++++++++++++
T Consensus        67 aiagi~vg~~~~v~~lv~~l~   87 (96)
T PTZ00382         67 AIAGISVAVVAVVGGLVGFLC   87 (96)
T ss_pred             cEEEEEeehhhHHHHHHHHHh
Confidence            456666666655554444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=86.69  E-value=0.5  Score=35.85  Aligned_cols=40  Identities=23%  Similarity=0.390  Sum_probs=32.9

Q ss_pred             CCCCCCeEEccCCCCCCCCCccc----CCCcccceeccccccCC
Q 031242            3 QFKSLYALNMSHNALTGSIPSSF----GNLKQIESLDLSMNNLS   42 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~ls~N~l~   42 (163)
                      +|++|+..+||.|.+....|+.+    +.-+.|.+|.+++|.+-
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            68899999999999988777654    45577899999998764

>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins

Probab=85.54  E-value=0.49  Score=31.13  Aligned_cols=29  Identities=7%  Similarity=0.239  Sum_probs=0.0

Q ss_pred             eeeeeehhhhHHhHHHHHHHHHhhhhHHH
Q 031242          119 WFFIAMSIGFAVGFGAVVSPLMFSVQVNK  147 (163)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (163)
                      |.+...+.+++++++++.++++++|.+|+
T Consensus        79 ~pi~~sal~v~lVl~llsg~lv~rrcrrr  107 (129)
T PF12191_consen   79 WPILGSALSVVLVLALLSGFLVWRRCRRR  107 (129)
T ss_dssp             -----------------------------
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhhhcc
Confidence            44444455555556665666666655554

Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.

>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences

Probab=83.62  E-value=1.1  Score=27.92  Aligned_cols=28  Identities=11%  Similarity=0.126  Sum_probs=14.5

Q ss_pred             ceeeeeehhhhHHhHHHHHHHHHhhhhH
Q 031242          118 DWFFIAMSIGFAVGFGAVVSPLMFSVQV  145 (163)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (163)
                      .|.+++.+-|++++++++.++++|+.+|
T Consensus        41 yWpyLA~GGG~iLilIii~Lv~CC~~K~   68 (98)
T PF07204_consen   41 YWPYLAAGGGLILILIIIALVCCCRAKH   68 (98)
T ss_pred             hhHHhhccchhhhHHHHHHHHHHhhhhh
Confidence            4666666655555555444444444444

p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=83.26  E-value=0.69  Score=31.56  Aligned_cols=11  Identities=18%  Similarity=0.401  Sum_probs=5.9

Q ss_pred             eeeeehhhhHH
Q 031242          120 FFIAMSIGFAV  130 (163)
Q Consensus       120 ~~~~~~~~~~~  130 (163)
                      .++++++|+.+
T Consensus        50 IVIGvVVGVGg   60 (154)
T PF04478_consen   50 IVIGVVVGVGG   60 (154)
T ss_pred             EEEEEEecccH
Confidence            45666655433

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-10
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%)
Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQXXXXXXXXXXXX 60
           +G    L+ LN+ HN ++GSIP   G+L+ +  LDLS N L G+IP              
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 61  XXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPL 94
                 G IP   Q ++F P  +  N GL G PL
Sbjct: 709 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%)
Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQXXXXXXXXXXXX 60
           +G    L+ LN+ HN ++GSIP   G+L+ +  LDLS N L G+IP              
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 61  XXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPL 94
                 G IP   Q ++F P  +  N GL G PL
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 24/94 (25%)
Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQXXXXXXXXXXXX 60
           +G  K+L  L++ +N + G++P     LK + SL++S NNL G+IP              
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ------------- 286
Query: 61  XXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPL 94
                         LQ F  ++Y  NK L G PL
Sbjct: 287 -----------GGNLQRFDVSAYANNKCLCGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  151 bits (385), Expect = 1e-43
 Identities = 40/108 (37%), Positives = 59/108 (54%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +G    L+ LN+ HN ++GSIP   G+L+ +  LDLS N L G+IP  +++L  L+ ++L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPS 108
           S NNL G IP   Q ++F P  +  N GL G PL     +        
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHH 759

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.8 bits (221), Expect = 2e-21
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +     L +L++S N L+G+IPSS G+L ++  L L +N L G+IP +L  +  L  L L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473

Query: 61  SYNNLVGKIPTS----TQLQSFS 79
            +N+L G+IP+     T L   S
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWIS 496

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.4 bits (220), Expect = 3e-21
 Identities = 30/70 (42%), Positives = 38/70 (54%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
              +L  L + +N  TG IP +  N  ++ SL LS N LSG IPS L SL+ L  L L  
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 63  NNLVGKIPTS 72
           N L G+IP  
Sbjct: 452 NMLEGEIPQE 461

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.0 bits (219), Expect = 4e-21
 Identities = 27/72 (37%), Positives = 41/72 (56%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +G    L  L +  N L G IP     +K +E+L L  N+L+G+IPS L++   L+ ++L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497

Query: 61  SYNNLVGKIPTS 72
           S N L G+IP  
Sbjct: 498 SNNRLTGEIPKW 509

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.8 bits (208), Expect = 1e-19
 Identities = 27/72 (37%), Positives = 38/72 (52%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +   K+L  L +  N LTG IPS   N   +  + LS N L+G+IP  +  L  L++L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 61  SYNNLVGKIPTS 72
           S N+  G IP  
Sbjct: 522 SNNSFSGNIPAE 533

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           + +  +L  L++S N  +  IP   G+   ++ LD+S N LSG     +++   L +LN+
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254

Query: 61  SYNNLVGKIPTS--TQLQSFS 79
           S N  VG IP      LQ  S
Sbjct: 255 SSNQFVGPIPPLPLKSLQYLS 275

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP-SQLASLNFLSVLNL 60
           G   +L  L++S N   G++P  FG+   +ESL LS NN SG++P   L  +  L VL+L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 61  SYNNLVGKIPTS 72
           S+N   G++P S
Sbjct: 351 SFNEFSGELPES 362

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.6 bits (205), Expect = 3e-19
 Identities = 26/72 (36%), Positives = 40/72 (55%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +    +L  +++S+N LTG IP   G L+ +  L LS N+ SG IP++L     L  L+L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 61  SYNNLVGKIPTS 72
           + N   G IP +
Sbjct: 546 NTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 3e-18
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 3   QFKSLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
             KSL  L+++ N  TG IP    G    +  LDLS N+  G +P    S + L  L LS
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 62  YNNLVGKIPTST 73
            NN  G++P  T
Sbjct: 327 SNNFSGELPMDT 338

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.2 bits (196), Expect = 4e-18
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
           G   +L  L++S N L+G    +     +++ L++S N   G IP     L  L  L+L+
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLA 277

Query: 62  YNNLVGKIPTS 72
            N   G+IP  
Sbjct: 278 ENKFTGEIPDF 288

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 3e-17
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 2   GQFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPSQLASLNF-LSVLN 59
           G    L +L +S N  +G +P  +   ++ ++ LDLS N  SG++P  L +L+  L  L+
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 60  LSYNNLVGKIPTS 72
           LS NN  G I  +
Sbjct: 375 LSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 3e-17
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
                 L  L +S N ++G +         +E LD+S NN S  IP  L   + L  L++
Sbjct: 174 SDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI 230

Query: 61  SYNNLVGKIPTS----TQLQSFS 79
           S N L G    +    T+L+  +
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLN 253

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.5 bits (189), Expect = 4e-17
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 6   SLYALNMSHNALTGSIPSSFGN--LKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
           SL  L++S N  +G I  +        ++ L L  N  +GKIP  L++ + L  L+LS+N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428

Query: 64  NLVGKIPTS 72
            L G IP+S
Sbjct: 429 YLSGTIPSS 437

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 1e-15
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPS--QLASLNFLSVLN 59
                L +L +S++ + GS+   F     + SLDLS N+LSG + +   L S + L  LN
Sbjct: 74  LSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132

Query: 60  LSYNNLVGKIPTSTQLQ 76
           +S N L      S  L+
Sbjct: 133 VSSNTLDFPGKVSGGLK 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPS--SFGNLKQIESLDLSMNNLSGKIP-SQLASLNFLSVL 58
               SL +L++S N+L+G + +  S G+   ++ L++S N L      S    LN L VL
Sbjct: 97  KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

Query: 59  NLSYNNLVGKIPTS 72
           +LS N++ G     
Sbjct: 157 DLSANSISGANVVG 170

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 2e-15
 Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 1/73 (1%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
                  +     G        L      +++     G       +   +  L++SYN L
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 66  VGKIPTS-TQLQS 77
            G IP     +  
Sbjct: 645 SGYIPKEIGSMPY 657

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.7 bits (174), Expect = 4e-15
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 2   GQFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPSQLA---SLNFLSV 57
           G    L  LN+S N L      S    L  +E LDLS N++SG              L  
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182

Query: 58  LNLSYNNLVGKIPTS--TQLQSFS 79
           L +S N + G +  S    L+   
Sbjct: 183 LAISGNKISGDVDVSRCVNLEFLD 206

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 7e-15
 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +G+ ++L  L +S+N+ +G+IP+  G+ + +  LDL+ N  +G IP+ +   +      +
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----I 565

Query: 61  SYNNLVGKIPTS 72
           + N + GK    
Sbjct: 566 AANFIAGKRYVY 577

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 9e-14
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 6   SLYALNMSHNALT---GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
            + ++++S   L     ++ SS  +L  +ESL LS ++++G +         L+ L+LS 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSR 109

Query: 63  NNLVGKIPTSTQLQSFS 79
           N+L G + T T L S S
Sbjct: 110 NSLSGPVTTLTSLGSCS 126

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 7e-12
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
           G  +SL  L+++ N   G+IP++        S  ++ N ++GK    + +       + +
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGA 590

Query: 62  YN--NLVGKIPTS 72
            N     G     
Sbjct: 591 GNLLEFQGIRSEQ 603

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 27  NLKQIESLDLSMNNLS---GKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQS 77
              ++ S+DLS   L+     + S L SL  L  L LS +++ G +       S
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSAS 101

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  120 bits (304), Expect = 4e-34
 Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
            G  K+   ++++ N+L   +    G  K +  LDL  N + G +P  L  L FL  LN+
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPL 94
           S+NNL G+IP    LQ F  ++Y  NK L G PL
Sbjct: 276 SFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 89.1 bits (222), Expect = 4e-22
 Identities = 23/71 (32%), Positives = 38/71 (53%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
            +   L+ L ++H  ++G+IP     +K + +LD S N LSG +P  ++SL  L  +   
Sbjct: 98  AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 62  YNNLVGKIPTS 72
            N + G IP S
Sbjct: 158 GNRISGAIPDS 168

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 86.8 bits (216), Expect = 3e-21
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLS-VLNL 60
            Q K+L  L+ S+NAL+G++P S  +L  +  +    N +SG IP    S + L   + +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 61  SYNNLVGKIPTS 72
           S N L GKIP +
Sbjct: 182 SRNRLTGKIPPT 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.1 bits (209), Expect = 3e-20
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 2   GQFKSLYALNMSH-NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
                L  L +   N L G IP +   L Q+  L ++  N+SG IP  L+ +  L  L+ 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 61  SYNNLVGKIPTS 72
           SYN L G +P S
Sbjct: 133 SYNALSGTLPPS 144

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 75.3 bits (186), Expect = 5e-17
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 1   MGQFKSLYALNMSHNALTGS--IPSSFGNLKQIESLDLS-MNNLSGKIPSQLASLNFLSV 57
             Q   +  L++S   L     IPSS  NL  +  L +  +NNL G IP  +A L  L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 58  LNLSYNNLVGKIPTS----TQLQSFS 79
           L +++ N+ G IP        L +  
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLD 131

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 10 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG--KIPSQLASLNFLSVLNLS-YNNLV 66
           +  +    G +  +     ++ +LDLS  NL     IPS LA+L +L+ L +   NNLV
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 67 GKIPTS 72
          G IP +
Sbjct: 91 GPIPPA 96

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 19/73 (26%), Positives = 35/73 (47%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
            + ++L  L++S   L    P++F +L  ++ L++S NN           LN L VL+ S
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

Query: 62  YNNLVGKIPTSTQ 74
            N+++       Q
Sbjct: 527 LNHIMTSKKQELQ 539

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.9 bits (169), Expect = 1e-14
 Identities = 18/69 (26%), Positives = 29/69 (42%)

Query: 4  FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
            S   L++S N L      SF +  +++ LDLS   +         SL+ LS L L+ N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 64 NLVGKIPTS 72
           +      +
Sbjct: 87 PIQSLALGA 95

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.6 bits (163), Expect = 9e-14
 Identities = 13/71 (18%), Positives = 25/71 (35%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
             F  L  L++S   +      ++ +L  + +L L+ N +        + L+ L  L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 62  YNNLVGKIPTS 72
             NL       
Sbjct: 109 ETNLASLENFP 119

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 2   GQFKSLYALNMSHNALTGSI-PSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
               SL  L M+ N+   +  P  F  L+ +  LDLS   L    P+   SL+ L VLN+
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 61  SYNNLVGKIPTS 72
           S+NN        
Sbjct: 502 SHNNFFSLDTFP 513

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 2   GQFKSLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
              + L  L+  H+ L      S F +L+ +  LD+S  +           L+ L VL +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 61  SYNNLVGKIPTST 73
           + N+         
Sbjct: 453 AGNSFQENFLPDI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  L ++ N +      +F  L  ++ L     NL+      +  L  L  LN+++N 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 65  LVG-KIPTS 72
           +   K+P  
Sbjct: 136 IQSFKLPEY 144

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 5   KSLYALNMSHNALT--GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
            SL  L++S N L+  G    S      ++ LDLS N +   + S    L  L  L+  +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 405

Query: 63  NNLVGKIPTST 73
           +NL      S 
Sbjct: 406 SNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 12/107 (11%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIE----SLDLSMNNLSGKIPSQLASLNFLS 56
                +L  L++S N +     +    L Q+     SLDLS+N ++   P     +  L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LH 203

Query: 57  VLNLSYNNLVGKIP-------TSTQLQSFSPTSYEGNKGLYGPPLTN 96
            L L  N     +           ++       +     L     + 
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 1   MGQFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSV-- 57
           +G  K+L  LN++HN +    +P  F NL  +E LDLS N +     + L  L+ + +  
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 58  --LNLSYNNLVGKIPTS 72
             L+LS N +    P +
Sbjct: 180 LSLDLSLNPMNFIQPGA 196

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNL-KQIESLDLSMNNLSGKIPSQ--LASLNFLSV 57
                SL  L+ S N +  S      +    +  L+L+ N+ +     Q  L  +     
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 573

Query: 58  LNLSYNNLVGKIPTS---TQLQSFSPT 81
           L +    +    P+      + S + T
Sbjct: 574 LLVEVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS--GKIPSQLASLNFLSVLN 59
            + KSL  L  + N   G    S  +L  +E LDLS N LS  G           L  L+
Sbjct: 322 LKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 60  LSYNNLVGKIPTSTQLQS 77
           LS+N ++        L+ 
Sbjct: 380 LSFNGVITMSSNFLGLEQ 397

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 10  LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYNNLVGK 68
           L++S N +    P +F  ++ +  L L  N  S  +    +  L  L V  L        
Sbjct: 182 LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN- 239

Query: 69  IPTSTQLQSFSPTSYEGNKGLY 90
                 L+ F  ++ EG   L 
Sbjct: 240 ---EGNLEKFDKSALEGLCNLT 258

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 7/85 (8%)

Query: 2   GQFKSLYALNMSHNALT------GSIPSSFGNLKQIESLDLSMNNLSGKIP-SQLASLNF 54
              + L  L +    L         I   F  L  + S  L    +      S       
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 55  LSVLNLSYNNLVGKIPTSTQLQSFS 79
           L ++N  +         S +  +F+
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFT 333

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 5/72 (6%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
                 L + +            +LK+     L+  +  G        L  L  L+LS N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKR-----LTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 64  NLVGKIPTSTQL 75
            L  K   S   
Sbjct: 358 GLSFKGCCSQSD 369

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 8/64 (12%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               ++ + ++    +      S+      + L+L           +L SL  L+  +  
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 62  YNNL 65
             N 
Sbjct: 337 GGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 6   SLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKI---PSQLASLNFLSVLNLS 61
            L+ L + +N  + ++       L  +E   L +     +        ++L  L  L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 62  YNNL 65
              L
Sbjct: 261 EFRL 264

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 3/63 (4%)

Query: 13  SHNALTGSIPSSFGNLK--QIESLDLSMNNLS-GKIPSQLASLNFLSVLNLSYNNLVGKI 69
           +   L     S+   L    IE   L+  +     I      L  +S  +L    +    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 70  PTS 72
             S
Sbjct: 299 DFS 301

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 2   GQFKSLYALNMSHNAL-TGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
              + +  + + +N L T  + +S   +K++  L+   N L GK+P+   S   L+ LNL
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNL 360

Query: 61  SYNNLVGKIPTS-----TQLQSFS 79
           +YN +   IP +      Q+++ S
Sbjct: 361 AYNQITE-IPANFCGFTEQVENLS 383

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 12/85 (14%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-------KIPSQLASLNF 54
            +  ++ ++N+S+N ++      F     + S++L  N L+               +   
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 55  LSVLNLSYNNLVGKIPTSTQLQSFS 79
           L+ ++L +N L   +    +  +  
Sbjct: 490 LTSIDLRFNKLTK-LSDDFRATTLP 513

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 12/109 (11%), Positives = 30/109 (27%), Gaps = 4/109 (3%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG----KIPSQLASLNFLS 56
           +     +  L++     +G +P + G L ++E L L  +          P  +++     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 57  VLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSEL 105
                  +           + FS    +            +S     + 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 8e-13
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 7/74 (9%)

Query: 1   MGQFKSLYALNMSHNALTG-------SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLN 53
                 + A++ S+N +          +  +      + S++LS N +S       ++ +
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 54  FLSVLNLSYNNLVG 67
            LS +NL  N L  
Sbjct: 458 PLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
            + K L  L   +N L G +P+ FG+  ++ SL+L+ N ++    +       +  L+ +
Sbjct: 327 QKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 62  YNNLVGKIPTSTQLQSFS 79
           +N L   IP     +S S
Sbjct: 386 HNKL-KYIPNIFDAKSVS 402

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
           F      +   N      P        +  L +  N++   +  ++     +SVL++  N
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDN 597

Query: 64  NLVGKIPTS 72
             +    + 
Sbjct: 598 PNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 1   MGQFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVL- 58
                 L ++++  N LT          L  +  +DLS N+ S   P+Q  + + L    
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542

Query: 59  -----NLSYNNLVGKIPTS 72
                +   N  + + P  
Sbjct: 543 IRNQRDAQGNRTLREWPEG 561

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 12/91 (13%), Positives = 32/91 (35%), Gaps = 13/91 (14%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL--------SGKIPSQLASLN 53
              K L  + + +      +P+    L +++ ++++ N            +  +      
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 54  FLSVLNLSYNNL-VGKIPTS----TQLQSFS 79
            + ++ + YNNL    + TS     +L    
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 12/105 (11%), Positives = 33/105 (31%), Gaps = 19/105 (18%)

Query: 1   MGQFKSLYALNMSHNALTG-------------------SIPSSFGNLKQIESLDLSMNNL 41
           + +   L    M ++                       +    + NLK +  +++     
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 42  SGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGN 86
             K+P+ L +L  + ++N++ N  +         Q+ +       
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 9e-10
 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 3/65 (4%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +    SL  L +  N +   +         I  LD+  N       S +       +  L
Sbjct: 562 ITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

Query: 61  SYNNL 65
            Y+  
Sbjct: 619 FYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSF--GNLKQIESLDLSMNNLSG-------KIPSQLASL 52
           G  + +  L+ +HN L   IP+ F   ++  + ++D S N +          +       
Sbjct: 374 GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 53  NFLSVLNLSYNNLVGKIPTS 72
             +S +NLS N +       
Sbjct: 433 INVSSINLSNNQISKFPKEL 452

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
            F  L    ++ +    SI  S     +   +    NN++  +   +  L  L    +  
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGN 215

Query: 63  NNLVGKIPTS 72
           +  V +    
Sbjct: 216 SPFVAENICE 225

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 12/62 (19%), Positives = 20/62 (32%)

Query: 11  NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP 70
           N   +        S  +  ++  L L     SG++P  +  L  L VL L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 71  TS 72
             
Sbjct: 123 LF 124

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 21/69 (30%), Positives = 32/69 (46%)

Query: 4  FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
            ++  LN++HN L     ++F    Q+ SLD+  N +S   P     L  L VLNL +N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 64 NLVGKIPTS 72
           L      +
Sbjct: 84 ELSQLSDKT 92

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 17/71 (23%), Positives = 28/71 (39%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L+ LN+  N         F +L +++ +DL +NNL+    S   +   L  LNL 
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

Query: 62  YNNLVGKIPTS 72
            N +       
Sbjct: 593 KNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 7e-14
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLA-SLNFLSVLNL 60
                L  +++  N L     S F N   ++SL+L  N ++         +   L+ L++
Sbjct: 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

Query: 61  SYNNLVGKIPTSTQLQSF 78
            +N       +     ++
Sbjct: 617 RFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYN 63
             L+ LN++ N ++     +F  L  +E LDL +N +  ++  Q    L  +  + LSYN
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 64  NLVGKIPTS 72
             +     S
Sbjct: 441 KYLQLTRNS 449

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 16/68 (23%), Positives = 26/68 (38%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  LN+ HN L+     +F     +  L L  N++     +       L  L+LS+N 
Sbjct: 73  PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 65  LVGKIPTS 72
           L      +
Sbjct: 133 LSSTKLGT 140

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 7e-13
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
            +L  L++  N++     + F   K + +LDLS N LS         L  L  L LS N 
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 65  LVGKIPTSTQLQSFSPTS 82
           +         L  F+ +S
Sbjct: 157 IQALKSEE--LDIFANSS 172

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
            ++  L +L++  N ++   P     L  ++ L+L  N LS       A    L+ L+L 
Sbjct: 46  TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105

Query: 62  YNNLVGKIPTS 72
            N++       
Sbjct: 106 SNSIQKIKNNP 116

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 2   GQFKSLYALNMSHNALTG--SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLN 59
               SL  L +   AL    S PS F  L+ +  LDLS NN++      L  L  L +L+
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510

Query: 60  LSYNNL 65
           L +NNL
Sbjct: 511 LQHNNL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
           ++ +L  L++S+N L      SF  L Q+E   L  NN+       L  L  +  LNL  
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 63  NNLVGKIPTSTQLQSFSPTSYEGNKGL 89
           +     I     L      S++  K L
Sbjct: 306 SFTKQSIS-LASLPKIDDFSFQWLKCL 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 2   GQFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
                L  L++  N +   +    +  L+ I  + LS N       +  A +  L  L L
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 61  SYNNLVGKIPTSTQLQSFS 79
               L     + +  Q   
Sbjct: 462 RRVALKNVDSSPSPFQPLR 480

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNF--LSVLN 59
            + K+L  L++SHN L+ +   +   L+ ++ L LS N +      +L       L  L 
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

Query: 60  LSYNNLVGKIPTS 72
           LS N +    P  
Sbjct: 178 LSSNQIKEFSPGC 190

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 8e-12
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG--KIPSQLASLNFLSVLNLSY 62
           ++++ + +S+N       +SF  +  ++ L L    L      PS    L  L++L+LS 
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 63  NNLVGKIP 70
           NN+     
Sbjct: 490 NNIANIND 497

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS--------GKIPSQLASLN 53
              ++L  L++S+N +          L+++E LDL  NNL+        G     L  L+
Sbjct: 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536

Query: 54  FLSVLNLSYNNLVGKIPTS 72
            L +LNL  N         
Sbjct: 537 HLHILNLESNGFDEIPVEV 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLA---SLNFLSVLNLSY 62
           SL  L +S N +    P  F  + ++  L L+   L   +  +L    +   +  L+LS 
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 63  NNLVGKIPTS 72
           + L     T+
Sbjct: 232 SQLSTTSNTT 241

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLK--QIESLDLSMNNLSGKIPSQLASLNFLSVLN 59
            Q ++L  L +S+N +               ++ L+LS N +    P    ++  L  L 
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201

Query: 60  LSYNNLVGKIPTSTQLQ 76
           L+   L   +     L+
Sbjct: 202 LNNVQLGPSLTEKLCLE 218

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 1   MGQFKSLYALNMSHNALT--------GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASL 52
           +   + L  L++ HN L         G        L  +  L+L  N            L
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 53  NFLSVLNLSYNNLVGKIPTS 72
             L +++L  NNL     + 
Sbjct: 560 FELKIIDLGLNNLNTLPASV 579

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLA----SLNFLSV 57
              K L  LNM  N + G   + F  L  ++ L LS +  S +  +       + + L +
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 58  LNLSYNNLVGKIPTS 72
           LNL+ N +      +
Sbjct: 386 LNLTKNKISKIESDA 400

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.1 bits (141), Expect = 9e-11
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           +S    ++S  +L      SF  LK +E L++  N++ G   +    L  L  L+LS + 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 65  LVGKIPTSTQLQSFSPTS 82
              +  T+    S + + 
Sbjct: 365 TSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFG---NLKQIESLDLSMNNLSGKIPSQLASLNF--LS 56
                L+ L +++  L  S+            I +L LS + LS    +    L +  L+
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 57  VLNLSYNNLVGKIPTS 72
           +L+LSYNNL      S
Sbjct: 252 MLDLSYNNLNVVGNDS 267

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 9/80 (11%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDL---------SMNNLSGKIPSQLASL 52
                L    + +N +      S   L  +  L+L         S+ +L          L
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328

Query: 53  NFLSVLNLSYNNLVGKIPTS 72
             L  LN+  N++ G     
Sbjct: 329 KCLEHLNMEDNDIPGIKSNM 348

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 10 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI 69
           + SH  LT  +P        I  L+L+ N L     +     + L+ L++ +N +    
Sbjct: 9  ADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 70 PTS 72
          P  
Sbjct: 66 PEL 68

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFG-NLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
               SL +LN+  N +T      FG   + +  LD+  N       S      F++ +N 
Sbjct: 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW---FVNWINE 637

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNK 87
           ++ N+      S+     +P  Y G  
Sbjct: 638 THTNIPE---LSSHYLCNTPPHYHGFP 661

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 1e-13
 Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG---------KIPSQLASL 52
              K L  + + +      +P    +L +++SL+++ N             ++     + 
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 53  NFLSVLNLSYNNLVGKIPTSTQLQS 77
             + +  + YNNL    P S  LQ 
Sbjct: 548 PKIQIFYMGYNNLEE-FPASASLQK 571

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 2e-13
 Identities = 13/76 (17%), Positives = 25/76 (32%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
                N  +     +   S+ NLK +  ++L       ++P  L  L  L  LN++ N  
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 66  VGKIPTSTQLQSFSPT 81
           +            +  
Sbjct: 528 ISAAQLKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 2e-13
 Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSM------NNLSGKIPSQLASLNF 54
                 L  +++S+N  + S P+   N  Q+++  +        N +  + P+ + +   
Sbjct: 749 ATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 55  LSVLNLSYNNLVGKIPTS--TQLQSF 78
           L  L +  N++  K+      QL   
Sbjct: 808 LIQLQIGSNDI-RKVDEKLTPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 3e-12
 Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS-------GKIPSQLASLNFL 55
           +  +   + +S+N +       F     I ++ LS N ++               +   L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 56  SVLNLSYNNLVGKIPTSTQLQSFS 79
           + ++L +N L   +    +  +  
Sbjct: 731 TTIDLRFNKLTS-LSDDFRATTLP 753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 10/112 (8%), Positives = 34/112 (30%), Gaps = 7/112 (6%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP-------SQLASLN 53
           +     +  L+++     G +P + G L +++ L    ++ +           +   S  
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 54  FLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSEL 105
               + + Y  +         L      +   N  +      +    + +++
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 1e-10
 Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 10/94 (10%)

Query: 1   MGQFKSLYALNMSH------NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNF 54
                 L A  + H      N +    P+       +  L +  N++  K+  +L     
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQ 828

Query: 55  LSVLNLSYNNL-VGKIPTSTQLQSFSPTSYEGNK 87
           L +L+++ N      + +              +K
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 2   GQFKSLYALNMSHNALTGSIPSS--FGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLN 59
                L  +++  N LT S+        L  + ++D+S N  S   P+Q  + + L    
Sbjct: 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFG 782

Query: 60  LSY------NNLVGKIPTS 72
           + +      N ++ + PT 
Sbjct: 783 IRHQRDAEGNRILRQWPTG 801

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 1/96 (1%)

Query: 10  LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI 69
            N   +           N  ++  L L+     G++P  +  L  L VL+   ++     
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-S 362

Query: 70  PTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSEL 105
                 +  +P   E  K                 L
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 11/87 (12%)

Query: 1   MGQFKSLYALNMSHNALTG---------SIPSSFGNLKQIESLDLSMNNLSG-KIPSQLA 50
           +     L +LN++ N              +        +I+   +  NNL      + L 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 51  SLNFLSVLNLSYNNLVGKIPTSTQLQS 77
            +  L +L+  +N +   +        
Sbjct: 571 KMVKLGLLDCVHNKVR-HLEAFGTNVK 596

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 2   GQFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
                +    M +N L     S S   + ++  LD   N +   + +   +   L+ L L
Sbjct: 545 DTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKL 602

Query: 61  SYNNLVGKIPTST 73
            YN +   IP   
Sbjct: 603 DYNQIEE-IPEDF 614

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 15/91 (16%)

Query: 2   GQFKSLYALNMSHNALT-------GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLA--SL 52
                +  + +S+N +T            ++ N   + ++DL  N L+  +       +L
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTL 752

Query: 53  NFLSVLNLSYNNLVGKIPTS----TQLQSFS 79
            +LS +++SYN      PT     +QL++F 
Sbjct: 753 PYLSNMDVSYNCF-SSFPTQPLNSSQLKAFG 782

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 4e-10
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNL 60
            +   L  L+  HN +      +FG   ++  L L  N +   IP    A  + +  L  
Sbjct: 570 QKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGF 626

Query: 61  SYNNLVGKIPTSTQLQS 77
           S+N L   IP     +S
Sbjct: 627 SHNKLKY-IPNIFNAKS 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 8e-10
 Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLSMNNLSGKIPSQLASLNFL 55
                 + +++ S+N +     +              ++ LS N +        A+ + +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 56  SVLNLSYNNL 65
           S + LS N +
Sbjct: 700 STIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPS--QLASLNFLSVL 58
            G    L  L + +N +            Q+E L  S N L   IP+     S+  +  +
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSV 649

Query: 59  NLSYNNL 65
           + SYN +
Sbjct: 650 DFSYNKI 656

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 12/108 (11%), Positives = 32/108 (29%), Gaps = 12/108 (11%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
            +   L  +  +++  T    +           +              ++L  L+ + L 
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 62  YNNLVGKIPTS----TQLQSFSPTSYEGNKGLYGPPLTNESQTRPSEL 105
               + ++P       +LQS    +   N+G+    L  +      + 
Sbjct: 500 NCPNMTQLPDFLYDLPELQSL---NIACNRGISAAQLKADWTRLADDE 544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 5   KSLYALNMSHNALTGSIPS--SFGNLKQIESLDLSMNNLSGKIPSQLASLNF-----LSV 57
             +  L  SHN L   IP+  +  ++  + S+D S N +  +  +   S++       S 
Sbjct: 619 DQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 58  LNLSYNNLVGKIP 70
           + LSYN +     
Sbjct: 678 VTLSYNEIQKFPT 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +    SL  L +  N +   +        Q+  LD++ N       + +       +  L
Sbjct: 802 ITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

Query: 61  SYNNL 65
            Y+  
Sbjct: 859 LYDKT 863

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
             +   L  + +    L   +P +      +E+L L+ N L   +P+ +ASLN L  L++
Sbjct: 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157

Query: 61  SYNNLVGKIPTS 72
                + ++P  
Sbjct: 158 RACPELTELPEP 169

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 26/131 (19%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +   ++L +L + ++ L+ ++  +  +L ++E LDL         P        L  L L
Sbjct: 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 61  SYNNLVGKIPTS----TQLQSFSPTSYEGNKGLYGPP------------------LTNES 98
              + +  +P      TQL+        G   L   P                       
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKL---DLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 99  QTRPSELPPSP 109
           Q RP   P  P
Sbjct: 318 QHRPVARPAEP 328

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
                +L +L +    +  S+P+S  NL+ ++SL +  + LS  +   +  L  L  L+L
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236

Query: 61  SYNNLVGKIPTS-TQLQS 77
                +   P        
Sbjct: 237 RGCTALRNYPPIFGGRAP 254

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNF------ 54
           M QF  L  L ++ N L  ++P+S  +L ++  L +       ++P  LAS +       
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 55  ---LSVLNLSYNNLVGKIPTS 72
              L  L L +  +   +P S
Sbjct: 182 LVNLQSLRLEWTGIR-SLPAS 201

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
               AL +    L    P     L  ++ + +    L  ++P  +     L  L L+ N 
Sbjct: 81  PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP 138

Query: 65  LVGKIPTS 72
           L   +P S
Sbjct: 139 LR-ALPAS 145

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 18/71 (25%), Positives = 29/71 (40%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               +L  L++S   L       F  L +++ L++S NNL     S    L  LS L+ S
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 62  YNNLVGKIPTS 72
           +N +       
Sbjct: 530 FNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 9e-12
 Identities = 19/69 (27%), Positives = 29/69 (42%)

Query: 4  FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
            S   +++S N L      SF N  +++ LDLS   +          L+ LS L L+ N
Sbjct: 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 64 NLVGKIPTS 72
           +    P S
Sbjct: 91 PIQSFSPGS 99

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 18/64 (28%), Positives = 26/64 (40%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  LNMSHN L     S +  L  + +LD S N +             L+  NL+
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553

Query: 62  YNNL 65
            N++
Sbjct: 554 NNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 15/61 (24%), Positives = 26/61 (42%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  L ++ N +    P SF  L  +E+L      L+      +  L  L  LN+++N 
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 65  L 65
           +
Sbjct: 140 I 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 2   GQFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
              + L  L+  H+ L      S+F +L+++  LD+S  N           L  L+ L +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 61  SYNNLVGKIPTST 73
           + N+      ++ 
Sbjct: 456 AGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 13/71 (18%), Positives = 23/71 (32%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
             F  L  L++S   +      ++  L  + +L L+ N +    P   + L  L  L   
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 62  YNNLVGKIPTS 72
              L       
Sbjct: 113 ETKLASLESFP 123

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 5   KSLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
            SL  L M+ N+   +  S+ F N   +  LDLS   L         +L+ L +LN+S+N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 64  NLVGKIPTS 72
           NL+    + 
Sbjct: 508 NLLFLDSSH 516

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP-SQLASLNFLSVLNLSYNN 64
           SL  L++S N     + ++F  L++++ LD   + L      S   SL  L  L++SY N
Sbjct: 377 SLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 65  LVGKIPTS 72
                   
Sbjct: 436 TKIDFDGI 443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 12/106 (11%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQ----IESLDLSMNNLSGKIPSQLASLNFLS 56
                +L  +++S+N +     +    L++      SLD+S+N +          +  L 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LH 207

Query: 57  VLNLSYNNLVGKIP-------TSTQLQSFSPTSYEGNKGLYGPPLT 95
            L L  N     I            +       ++  + L     +
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 2   GQFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLS---- 56
           GQ  +L  LN++HN +    +P+ F NL  +  +DLS N +     + L  L        
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184

Query: 57  VLNLSYNNL 65
            L++S N +
Sbjct: 185 SLDMSLNPI 193

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLS--VLN 59
                L +L ++ N    SI      L  +  LDLS N LS       + L   S   L+
Sbjct: 325 LDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 60  LSYNNLVGKIPTSTQLQS 77
           LS+N  +        L+ 
Sbjct: 383 LSFNGAIIMSANFMGLEE 400

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 5/56 (8%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 10  LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
             +++          F  L  + ++ L+  ++       +        L++    L
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 13  SHNALTGSIPSSFGNLK--QIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
               L    PS    L    I+   L+  N       +   L  +S ++L+  ++
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
             ++ A++++  ++            + +SL +    L    P+    L FL  L L+ N
Sbjct: 284 LANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ-FPTL--DLPFLKSLTLTMN 338

Query: 64  NLVGKIPTSTQLQS 77
                      L S
Sbjct: 339 KG-SISFKKVALPS 351

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 42
            Q  SL  L+ S N +  S        K +   +L+ N+++
Sbjct: 518 NQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 6  SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
                ++ ++L  ++ S   +   ++ LDLS N LS    + LA    L +LNLS N L
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 66 VGKIPTSTQLQS 77
                   L +
Sbjct: 71 YE-TLDLESLST 81

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 4e-11
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNL 60
            + +    + +++N +T       G   +++ LDL +N +         AS + L  LNL
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 61  SYNNLVGKIPTSTQLQS 77
            YN +   +        
Sbjct: 177 QYNFIY-DVKGQVVFAK 192

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
            ++  L++S N L+    +      ++E L+LS N L       L SL+ L  L+L+ N 
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNY 91

Query: 65  LVGKIPTSTQLQS 77
           +  ++     +++
Sbjct: 92  V-QELLVGPSIET 103

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 17/104 (16%), Positives = 28/104 (26%), Gaps = 2/104 (1%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  L++S N L   +   F +   +  + L  N L   I   L     L   +L  N 
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 65  LVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPS 108
                      ++    +              E  T P+     
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 6e-08
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               +L  LN+ +N +   +        ++++LDLS N L+  +  +  S   ++ ++L 
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 62  YNNL 65
            N L
Sbjct: 223 NNKL 226

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
             F  L  LN+S N L         +L  + +LDL+ N +      +L     +  L+ +
Sbjct: 55  APFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAA 107

Query: 62  YNNLVGKIPTST 73
            NN+  ++  S 
Sbjct: 108 NNNI-SRVSCSR 118

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 20 SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
          +I     N  + +   ++ ++L   + S   S   +  L+LS N L
Sbjct: 1  AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL 46

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
            S+  L+ ++N ++    S     K   ++ L+ N ++          + +  L+L  N 
Sbjct: 99  PSIETLHAANNNISRVSCSRGQGKK---NIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 65  L 65
           +
Sbjct: 156 I 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 2/64 (3%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                +  +++ +N L   I  +    + +E  DL  N                 V  ++
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVA 268

Query: 62  YNNL 65
              +
Sbjct: 269 KQTV 272

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               +L  L++++N +             IE+L  + NN+S ++    +       + L+
Sbjct: 77  ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLA 128

Query: 62  YNNL 65
            N +
Sbjct: 129 NNKI 132

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 5  KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
                 ++ ++L  ++ S   +   ++ LDLS N LS    + LA    L +LNLS N 
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 65 LVGKIPTSTQLQS 77
          L  +      L +
Sbjct: 70 LY-ETLDLESLST 81

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNL 60
            + +    + +++N +T       G   +++ LDL +N +         AS + L  LNL
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 61  SYNNLVGKIPTSTQLQS 77
            YN +   +        
Sbjct: 177 QYNFIY-DVKGQVVFAK 192

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
            F  L  L++S N L   +   F +   +  + L  N L   I   L     L   +L  
Sbjct: 189 VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 63  NNL 65
           N  
Sbjct: 247 NGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
             F  L  LN+S N L         +L  + +LDL+ N +      +L     +  L+ +
Sbjct: 55  APFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAA 107

Query: 62  YNNLVGKIPTST 73
            NN+  ++  S 
Sbjct: 108 NNNI-SRVSCSR 118

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 2   GQFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           G    +  L++  N +   +      +   +E L+L  N +   +         L  L+L
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDL 198

Query: 61  SYNNL 65
           S N L
Sbjct: 199 SSNKL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 20 SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
          +I     N  + +   ++ ++L   + S   S   +  L+LS N L
Sbjct: 1  AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL 46

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 8/64 (12%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                +  +++ +N L   I  +    + +E  DL  N        +        V  ++
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVA 268

Query: 62  YNNL 65
              +
Sbjct: 269 KQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
            S+  L+ ++N ++    S     K   ++ L+ N ++          + +  L+L  N 
Sbjct: 99  PSIETLHAANNNISRVSCSRGQGKK---NIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 65  L 65
           +
Sbjct: 156 I 156

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               +L  L++++N +             IE+L  + NN+S ++    +       + L+
Sbjct: 77  ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLA 128

Query: 62  YNNL 65
            N +
Sbjct: 129 NNKI 132

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 12/68 (17%), Positives = 22/68 (32%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  L ++ N L     ++    K ++ L      +S      L +   L  L L  N+
Sbjct: 81  HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140

Query: 65  LVGKIPTS 72
           +       
Sbjct: 141 ISSIKLPK 148

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
             F  L  L+++   L+  +PS    L  ++ L LS N          ++   L+ L++ 
Sbjct: 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333

Query: 62  YNNLVGKIPTST 73
            N    ++ T  
Sbjct: 334 GNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 17/69 (24%), Positives = 26/69 (37%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
             S   L  S N L     ++F  L  +  LDL+   +         S + L  L L+ N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 64  NLVGKIPTS 72
            L+    T+
Sbjct: 92  PLIFMAETA 100

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI---PSQLASLNFLSVL 58
                L  LN+SH+ L  S    F  L  ++ L+L  N+         + L +L  L +L
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 59  NLSYNNLVGKIPTS 72
            LS+ +L      +
Sbjct: 482 VLSFCDLSSIDQHA 495

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 10/71 (14%), Positives = 26/71 (36%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
            +  +L  L+++   +      +F +  ++++L L+ N L     + L+    L  L   
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 62  YNNLVGKIPTS 72
              +       
Sbjct: 114 QTGISSIDFIP 124

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  L +S   L+     +F +LK +  +DLS N L+      L+ L  +  LNL+ N+
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534

Query: 65  LVGKIPTS 72
           +   +P+ 
Sbjct: 535 ISIILPSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 15/61 (24%), Positives = 24/61 (39%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           K+L  L      ++        N K +ESL L  N++S     +      L VL+   N 
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 65  L 65
           +
Sbjct: 165 I 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 5   KSLYALNMSHNALTGS--IPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
           ++L  L++SH+ +  S        NL  ++SL+LS N               L +L+L++
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 63  NNLVGKIPTST 73
             L  K   S 
Sbjct: 410 TRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
           S+ ++N+  +       ++F     ++ LDL+  +LS ++PS L  L+ L  L LS N  
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313

Query: 66  VGKIPTS 72
                 S
Sbjct: 314 ENLCQIS 320

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
              K +  +++SHN LT S   +  +LK I  L+L+ N++S  +PS L  L+    +NL 
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLR 555

Query: 62  YNNL 65
            N L
Sbjct: 556 QNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 5   KSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
             L  L+++   L      S F NL  ++ L+LS + L          L  L  LNL  N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 64  NLVGKIP 70
           +      
Sbjct: 460 HFPKGNI 466

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 2/101 (1%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSV--LNLSY 62
           K+L +L +  N ++          ++++ LD   N +       ++SL   +   LNL+ 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 63  NNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPS 103
           N++ G  P +     F   ++ G + L       ++ T  S
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNL--SGKIPSQLASLNFLSVL 58
             F SL  L++  N     + +    NL+ +  LDLS +++  S     QL +L+ L  L
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

Query: 59  NLSYNNLVGKIPTS 72
           NLSYN  +     +
Sbjct: 382 NLSYNEPLSLKTEA 395

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLK--QIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
             + L  L+  +NA+         +L+     SL+L+ N+++G I            LN 
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNF 209

Query: 61  SYNNLVGKIPTSTQLQSFS 79
                +  I    +  +  
Sbjct: 210 GGTQNLLVIFKGLKNSTIQ 228

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNF--LSVLNLSYN 63
           +  +LN++ N +   I     +    +SL+         I   L +     L +      
Sbjct: 180 TNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 64  NL 65
           + 
Sbjct: 239 DD 240

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 9/74 (12%), Positives = 19/74 (25%), Gaps = 4/74 (5%)

Query: 3   QFKSLYALNMSHNALTGSIPS--SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSV--L 58
                 +LN         I        ++ +        +     P+    L  +SV  +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 59  NLSYNNLVGKIPTS 72
           NL  +        +
Sbjct: 260 NLQKHYFFNISSNT 273

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 9e-11
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  LN+  N ++    S   NL Q+ SL L+ N L  +    +  L  L+ L LS
Sbjct: 262 KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 62  YNNLVGKIPTS--TQLQSF 78
            N++    P +  +++ S 
Sbjct: 320 QNHITDIRPLASLSKMDSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  L +  N +T    S+  NL  +  L L+ +N+S   P  LA+L  +  LNL 
Sbjct: 85  SNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLG 140

Query: 62  YNNLVGKIPTSTQLQS 77
            N+ +  +   + +  
Sbjct: 141 ANHNLSDLSPLSNMTG 156

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 4e-10
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L +L +++N L        G L  + +L LS N+++   P  LASL+ +   + +
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341

Query: 62  YNNL 65
              +
Sbjct: 342 NQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 5e-09
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  L +  N ++    ++  +L +++ L++  N +S    S L +L+ L+ L L+
Sbjct: 240 ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLN 295

Query: 62  YNNLVGKIPTS 72
            N L  +    
Sbjct: 296 NNQLGNEDMEV 306

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                +Y+LN+  N    S  S   N+  +  L ++ + +    P  +A+L  L  L+L+
Sbjct: 129 ANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185

Query: 62  YNNL 65
           YN +
Sbjct: 186 YNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 6e-08
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +    +L  LN++ N +T   P    NL ++ +L +  N ++    S L +L  L  L L
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYL 117

Query: 61  SYNNLVGKIPTS--TQLQS 77
           + +N+    P +  T++ S
Sbjct: 118 NEDNISDISPLANLTKMYS 136

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 6e-08
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L +L + +N +T   P    NL Q+  L++  N +S    + +  L  L +LN+ 
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVG 273

Query: 62  YNNL 65
            N +
Sbjct: 274 SNQI 277

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                LY+L++++N +    P    +L  +      +N ++   P  +A++  L+ L + 
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229

Query: 62  YNNLVGKIPTS--TQLQS 77
            N +    P +  +QL  
Sbjct: 230 NNKITDLSPLANLSQLTW 247

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
            + +S+  L ++   +  SI      L  +E L+L+ N ++   P  L++L  L+ L + 
Sbjct: 41  EELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIG 96

Query: 62  YNNL 65
            N +
Sbjct: 97  TNKI 100

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 5e-07
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 3  QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
                   +   ++T  +      L+ I  L ++   ++  I   +  L  L  LNL+ 
Sbjct: 20 DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNG 75

Query: 63 NNLVGKIPTS--TQLQSFS 79
          N +    P S   +L +  
Sbjct: 76 NQITDISPLSNLVKLTNLY 94

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 7e-07
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  L ++ + +    P    NL  + SL L+ N +    P  LASL  L      
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY 207

Query: 62  YNNLVGKIPTS--TQLQSFS 79
            N +    P +  T+L S  
Sbjct: 208 VNQITDITPVANMTRLNSLK 227

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 14/65 (21%), Positives = 30/65 (46%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
            +L  L +    +T     +   L  +  LD+S +     I +++ +L  ++ ++LSYN 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 65  LVGKI 69
            +  I
Sbjct: 148 AITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +    SL  L++SH+A   SI +    L ++ S+DLS N     I   L +L  L  LN+
Sbjct: 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNI 166

Query: 61  SYNNL 65
            ++ +
Sbjct: 167 QFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +    ++  L +++   T    +    L  +E L +   +++      L+ L  L++L++
Sbjct: 62  IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 61  SYNNLVGKIPTS----TQLQS 77
           S++     I T      ++ S
Sbjct: 120 SHSAHDDSILTKINTLPKVNS 140

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                + ++++S+N     I      L +++SL++  + +       +     L+ L   
Sbjct: 133 NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAF 189

Query: 62  YNNL 65
              +
Sbjct: 190 SQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 11/81 (13%), Positives = 31/81 (38%), Gaps = 8/81 (9%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
             Q  SL  + +++  +T  + +       I+ L ++  + +    + ++ L+ L  L +
Sbjct: 40  EAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRI 95

Query: 61  SYNNLVGKIPTS----TQLQS 77
              ++      +    T L  
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTL 116

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           + L  L +S+N L  ++      +  ++ LDLS N+L   +       + L  L L +N+
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 65  L 65
           +
Sbjct: 330 I 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
             +  L  +++S+N L   +   F  ++++E L +S N L   +      +  L VL+LS
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303

Query: 62  YNNL 65
           +N+L
Sbjct: 304 HNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  L + HN LT    +   N   +  +DLS N L   +      +  L  L +S
Sbjct: 223 PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 62  YNNL 65
            N L
Sbjct: 281 NNRL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 14/64 (21%), Positives = 27/64 (42%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
             F+ +  LN++   +      +F     I+ L +  N +    P    ++  L+VL L 
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 62  YNNL 65
            N+L
Sbjct: 126 RNDL 129

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               +L  L++SHN L   +  +     ++E+L L  N++   +   L++ + L  L LS
Sbjct: 292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLS 347

Query: 62  YNNL 65
           +N+ 
Sbjct: 348 HNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYN 63
             L  L +  N L+      F N  ++ +L +S NNL  +I      +   L  L LS N
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN 175

Query: 64  NL 65
            L
Sbjct: 176 RL 177

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
            L  L+MS+N L      +F     +++L LS N L+  +   L+ +  L   N+SYN L
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL 198

Query: 66  VGKIPTSTQLQSFS 79
              +     ++   
Sbjct: 199 -STLAIPIAVEELD 211

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 7/62 (11%), Positives = 24/62 (38%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
             +   +   ++ +     +   + +Q+E L+L+   +        A  + +  L + +N
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 64  NL 65
            +
Sbjct: 104 AI 105

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNLSYN 63
            ++  L M  NA+    P  F N+  +  L L  N+LS  +P  +  +   L+ L++S N
Sbjct: 93  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN 151

Query: 64  NLVGKIPTST 73
           NL  +I   T
Sbjct: 152 NLE-RIEDDT 160

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               SL+  N+S+N L+     +      +E LD S N+++  +   +     L++L L 
Sbjct: 183 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQ 234

Query: 62  YNNLVGKIPTSTQLQS 77
           +NNL            
Sbjct: 235 HNNLT-DTAWLLNYPG 249

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
            SL  L +S N LT  +      +  +   ++S N LS      LA    +  L+ S+N+
Sbjct: 165 TSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 216

Query: 65  L 65
           +
Sbjct: 217 I 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 7/60 (11%), Positives = 19/60 (31%)

Query: 6  SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
            Y +++               L   + +    + +     + L S   + +LNL+   +
Sbjct: 22 VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 2   GQFKSLYALNMSHNALT--GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLN 59
           G + SL  L +S N L            LK + SLD+S N     +P        +  LN
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416

Query: 60  LSYNNL 65
           LS   +
Sbjct: 417 LSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 4  FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
            ++ +L++S N +T            ++ L L  + ++        SL  L  L+LS N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 64 NL 65
          +L
Sbjct: 85 HL 86

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNLSYN 63
            SL  L++S N L+    S FG L  ++ L+L  N      + S   +L  L  L +   
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 64  NLVGKIPTST 73
               +I    
Sbjct: 134 ETFSEIRRID 143

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 13/61 (21%), Positives = 24/61 (39%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
            SL  L +   +L      S  +++ I  L L ++  +  +      L+ +  L L   N
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 65  L 65
           L
Sbjct: 208 L 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 3   QFKSLYALNMSHNALTGSI---PSSFGNLKQIESLDLSMNNLS--GKIPSQLASLNFLSV 57
             KSL  L++S N +        +  G    +++L LS N+L    K    L +L  L+ 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 58  LNLSYNNL 65
           L++S N  
Sbjct: 392 LDISRNTF 399

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 12/79 (15%), Positives = 35/79 (44%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
           +  ++  L++    L   + + +  L++++ + +  + +     S    L  L  L+LS 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 63  NNLVGKIPTSTQLQSFSPT 81
           N +V +   ++  +   P+
Sbjct: 344 NLMVEEYLKNSACKGAWPS 362

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 19/63 (30%), Positives = 28/63 (44%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
              +L  L +  + +      +F +L  +E LDLS N+LS    S    L+ L  LNL  
Sbjct: 48  ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107

Query: 63  NNL 65
           N  
Sbjct: 108 NPY 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ---LASLNFLSVL 58
              + +  + + ++ +     S   +LK +E LDLS N +  +         +   L  L
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 59  NLSYNNL 65
            LS N+L
Sbjct: 367 VLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
             K+L +L++S N     +P S    +++  L+LS   +   + + +     L VL++S 
Sbjct: 385 TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSN 440

Query: 63  NNL 65
           NNL
Sbjct: 441 NNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 2   GQFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
               +L  L + +      I    F  L  +  L++   +L       L S+  +  L L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 61  SYNNL 65
             +  
Sbjct: 180 HLSES 184

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
            L  L +S N L  ++P +      +  + +S N L          L  L  + L  N  
Sbjct: 452 RLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

Query: 66  V 66
            
Sbjct: 510 D 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 16/88 (18%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
              ++L  L++S+N L  S       L+    L +S N L   +P   +    L V+ +S
Sbjct: 428 CIPQTLEVLDVSNNNLD-SFSLFLPRLQ---ELYISRNKLK-TLPD-ASLFPVLLVMKIS 481

Query: 62  YNNLVGKIPTSTQLQSFSPTSYEGNKGL 89
            N          QL+S     ++    L
Sbjct: 482 RN----------QLKSVPDGIFDRLTSL 499

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 9/64 (14%), Positives = 19/64 (29%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
              + ++ L +  +     +      L  +  L+L   NL+    S L      S +   
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 62  YNNL 65
               
Sbjct: 229 AFRG 232

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
           +  LY L + HN +      S   L  +  L L  N LS ++P+ L  L  L V+ L  N
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274

Query: 64  NL 65
           N+
Sbjct: 275 NI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 2   GQFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
              ++L  L++ HN +  +I         ++  L L  N +       L+ L  L  L+L
Sbjct: 190 DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 61  SYNNL 65
             N L
Sbjct: 249 DNNKL 253

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI--PSQLASLNFLSVLN 59
               SL  L +  N +       F  L+ +  +++  N L      P     L  L+ L 
Sbjct: 120 NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLR 178

Query: 60  LSYNNL 65
           +S   L
Sbjct: 179 ISEAKL 184

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSY 62
                 L++ +N ++      F  L+ + +L L  N +S KI  +  + L  L  L +S 
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISK 111

Query: 63  NNLVGKIPTST 73
           N+LV +IP + 
Sbjct: 112 NHLV-EIPPNL 121

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
             + LYAL + +N ++     +F  L++++ L +S N+L  +IP  L   + L  L +  
Sbjct: 76  GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHD 132

Query: 63  NNLVGKIPTST 73
           N +  K+P   
Sbjct: 133 NRIR-KVPKGV 142

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYNN 64
            L  L +S   LT  IP      + +  L L  N +   I  + L   + L  L L +N 
Sbjct: 173 KLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228

Query: 65  L 65
           +
Sbjct: 229 I 229

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
               L  L ++ N +      +F  L  ++ L     NL+      +  L  L  LN+++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 63  NNL 65
           N +
Sbjct: 134 NLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 5   KSLYALNMSHNALT--GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
            SL  L++S N L+  G    S      ++ LDLS N +   + S    L  L  L+  +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405

Query: 63  NNLVGKIPTST 73
           +NL      S 
Sbjct: 406 SNLKQMSEFSV 416

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP-SQLASLNFLSVLNLSYNN 64
           SL  L++S N +  ++ S+F  L+Q+E LD   +NL      S   SL  L  L++S+ +
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 65  L 65
            
Sbjct: 433 T 433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 8e-09
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 4  FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
            S   L++S N L      SF +  +++ LDLS   +         SL+ LS L L+ N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 64 NL 65
           +
Sbjct: 87 PI 88

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL-SGKIPSQLASLNFLSVLNLSYN 63
            SL  L      L        G+LK ++ L+++ N + S K+P   ++L  L  L+LS N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 64  NL 65
            +
Sbjct: 160 KI 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 5   KSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
            SL  L M+ N+   +     F  L+ +  LDLS   L    P+   SL+ L VLN++ N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 64  NL 65
            L
Sbjct: 505 QL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 3   QFKSLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
             + L  L+  H+ L      S F +L+ +  LD+S  +           L+ L VL ++
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 62  YNNLVGKIP 70
            N+      
Sbjct: 454 GNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 13/64 (20%), Positives = 25/64 (39%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
             F  L  L++S   +      ++ +L  + +L L+ N +        + L+ L  L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 62  YNNL 65
             NL
Sbjct: 109 ETNL 112

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
            + ++L  L++S   L    P++F +L  ++ L+++ N L          L  L  + L 
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

Query: 62  YNNL 65
            N  
Sbjct: 527 TNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 5   KSLYALNMSHNALT-GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSV----LN 59
           K+L  LN++HN +    +P  F NL  +E LDLS N +     + L  L+ + +    L+
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 60  LSYNNL 65
           LS N +
Sbjct: 184 LSLNPM 189

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 12/105 (11%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQ----IESLDLSMNNLSGKIPSQLASLNFLS 56
                +L  L++S N +     +    L Q      SLDLS+N ++   P     +  L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LH 203

Query: 57  VLNLSYNNLVGKIP-------TSTQLQSFSPTSYEGNKGLYGPPL 94
            L L  N     +           ++       +     L     
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS--GKIPSQLASLNFLSVLNL 60
           + KSL  L  + N    +   S  +L  +E LDLS N LS  G           L  L+L
Sbjct: 323 KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 61  SYNNLV---GKIPTSTQLQS 77
           S+N ++          QL+ 
Sbjct: 381 SFNGVITMSSNFLGLEQLEH 400

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           + L  L +S+N L  ++      +  ++ LDLS N+L   +       + L  L L +N+
Sbjct: 278 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

Query: 65  L 65
           +
Sbjct: 336 I 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 6e-09
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  L + HN LT        N   +  +DLS N L   +      +  L  L +S
Sbjct: 229 PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286

Query: 62  YNNL 65
            N L
Sbjct: 287 NNRL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
             +  L  +++S+N L   +   F  ++++E L +S N L   +      +  L VL+LS
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309

Query: 62  YNNL 65
           +N+L
Sbjct: 310 HNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 14/64 (21%), Positives = 27/64 (42%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
             F+ +  LN++   +      +F     I+ L +  N +    P    ++  L+VL L 
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131

Query: 62  YNNL 65
            N+L
Sbjct: 132 RNDL 135

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  L+MS+N L      +F     +++L LS N L+  +   L+ +  L   N+SYN 
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNL 203

Query: 65  LVGKIPTSTQLQSFS 79
           L   +     ++   
Sbjct: 204 L-STLAIPIAVEELD 217

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               +L  L++SHN L   +  +     ++E+L L  N++   +   L++ + L  L LS
Sbjct: 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLS 353

Query: 62  YNNL 65
           +N+ 
Sbjct: 354 HNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 7/62 (11%), Positives = 24/62 (38%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
             +   +   ++ +     +   + +Q+E L+L+   +        A  + +  L + +N
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 64  NL 65
            +
Sbjct: 110 AI 111

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNLSYN 63
            ++  L M  NA+    P  F N+  +  L L  N+LS  +P  +  +   L+ L++S N
Sbjct: 99  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN 157

Query: 64  NLVGKIPTST 73
           NL  +I   T
Sbjct: 158 NLE-RIEDDT 166

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               SL+  N+S+N L+     +      +E LD S N+++  +   +     L++L L 
Sbjct: 189 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQ 240

Query: 62  YNNLVGKIPTSTQLQS 77
           +NNL            
Sbjct: 241 HNNLT-DTAWLLNYPG 255

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
            SL  L +S N LT  +      +  +   ++S N LS      LA    +  L+ S+N+
Sbjct: 171 TSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 222

Query: 65  L 65
           +
Sbjct: 223 I 223

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 7/60 (11%), Positives = 19/60 (31%)

Query: 6  SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
            Y +++               L   + +    + +     + L S   + +LNL+   +
Sbjct: 28 VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           + Q   +  L++SHN L  ++P +   L+ +E L  S N L   +   +A+L  L  L L
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLL 515

Query: 61  SYNNL 65
             N L
Sbjct: 516 CNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNL 60
              + L  L  S NAL  ++     NL +++ L L  N L        L S   L +LNL
Sbjct: 483 AALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

Query: 61  SYNNLVGKIPTSTQLQSFSPT 81
             N+L  +     +L    P+
Sbjct: 541 QGNSLCQEEGIQERLAEMLPS 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 3e-09
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
             +L  LN+S+N L     S+F  L ++  +DL  N+++         L  L  L+L  N
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372

Query: 64  NLVGKIPTSTQLQS 77
            L   I     +  
Sbjct: 373 ALT-TIHFIPSIPD 385

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 3e-09
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 6  SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYNN 64
          +   L +S N +     SSF  L+Q++ L+L        I  +   +L  L +L+L  + 
Sbjct: 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 65 L 65
          +
Sbjct: 85 I 85

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
           S+  L++SH  +       F  LK ++ L+L+ N ++         L+ L VLNLSYN L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 4   FKSLYALNMSHNALTGSI-PSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
            + L  L +       +I   +F NL  +  LDL  + +    P     L  L  L L +
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 63  NNL 65
             L
Sbjct: 107 CGL 109

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 5   KSLYALNMSHNALTGSI--PSSFGNLKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNLS 61
             L+ L +    L+ ++     F NLK +  LDLS N +    +      LN L  ++ S
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 62  YNNL 65
            N +
Sbjct: 157 SNQI 160

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 6e-08
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI--PSQLASLNFLSVLNLSY 62
            +L  L++  + +    P +F  L  +  L L    LS  +       +L  L+ L+LS 
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 63  NNL 65
           N +
Sbjct: 133 NQI 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
            K L  LN+++N +      +F  L  ++ L+LS N L     S    L  ++ ++L  N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 64  NL 65
           ++
Sbjct: 349 HI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 5   KSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNF--LSVLNLS 61
           K+L  L++S N +    +  SFG L  ++S+D S N +      +L  L    LS  +L+
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 62  YNNLVGKIPTS 72
            N+L  ++   
Sbjct: 183 ANSLYSRVSVD 193

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 1   MGQFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNF----- 54
           + +   L  L ++ N  +  S   +      +E L L  N L     ++L    F     
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 55  LSVLNLSYNNL 65
           L VL L++N L
Sbjct: 482 LQVLYLNHNYL 492

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 5   KSLYALNMSHNALTGSIPSS-----FGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLN 59
            SL  L +  N L  +  +      F  L  ++ L L+ N L+   P   + L  L  L+
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 60  LSYNNL 65
           L+ N L
Sbjct: 511 LNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 8e-07
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 6   SLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPSQLAS-LNFLSVLNLSYN 63
           +   +++S N L    I      +  ++ L L+ N  S     Q  S    L  L L  N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 64  NLVGKIPTSTQLQSFSPTS 82
            L     T      F   S
Sbjct: 462 MLQLAWETELCWDVFEGLS 480

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 15/64 (23%), Positives = 18/64 (28%), Gaps = 4/64 (6%)

Query: 10 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI 69
                 LT  +P     L   E L LS N +     S    L  L +L L        I
Sbjct: 9  AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 70 PTST 73
              
Sbjct: 65 DKEA 68

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
               L  L ++HN L    P  F +L  +  L L+ N L+    + L +   L +L++S 
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISR 535

Query: 63  NNL 65
           N L
Sbjct: 536 NQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQ--IESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
             +       + +     ++F  L +  +  LDLS   +         +L  L VLNL+Y
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 63  NNL 65
           N +
Sbjct: 300 NKI 302

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQ--IESLDLSMNNLSGKIPSQLASLN------ 53
           G+  SL +++ S N +          L+   +    L+ N+L  ++              
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 54  FLSVLNLSYNNLVGKIP 70
            L +L++S N     I 
Sbjct: 205 VLEILDVSGNGWTVDIT 221

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 11/162 (6%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
             +L  L+++ N LT    +       +E LD+S N L    P    S   LSVL++++N
Sbjct: 503 LTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVS---LSVLDITHN 557

Query: 64  NLVGKIPTSTQLQSFSPTSYEGNKGLYGPP--LTNESQTRPSELPPSPPPASSDEIDWFF 121
             +       +L +F       N  + GPP  +        S +          + +   
Sbjct: 558 KFI----CECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVL 613

Query: 122 IAMSIGFAVGFGAVVSPLMFSVQVNKWYNDLIYKFIYRRFRV 163
            ++     +     ++  + ++     +    +       R+
Sbjct: 614 KSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRL 655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSV--LNLSYN 63
           ++       NA++ S   S      I       +N+     +  A L   SV  L+LS+ 
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276

Query: 64  NLVGKIPTST 73
            +   + +  
Sbjct: 277 FVF-SLNSRV 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.4 bits (128), Expect = 4e-09
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIES----LDLSMNNLSGKIPSQLASLNFLSVL 58
             +SL AL++S N L  S+P+        E          N ++  IP  + SL+    +
Sbjct: 178 LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235

Query: 59  NLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRP 102
            L  N L  +I  S   Q+  P  +              +  RP
Sbjct: 236 ILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 5e-08
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
                  L ++   L+ S+P +     QI  L+++ N L   +P   ASL     L+   
Sbjct: 57  LINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASL---EYLDACD 109

Query: 63  NNL 65
           N L
Sbjct: 110 NRL 112

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 5e-08
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
              +  L ++ NAL  S+P    +L   E LD   N LS  +P   ASL     L++  N
Sbjct: 79  PPQITVLEITQNALI-SLPELPASL---EYLDACDNRLS-TLPELPASLK---HLDVDNN 130

Query: 64  NL 65
            L
Sbjct: 131 QL 132

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 8e-08
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
              SL  L+   N L+ ++P    +LK    LD+  N L+  +P   A    L  +N   
Sbjct: 98  LPASLEYLDACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPAL---LEYINADN 149

Query: 63  NNLVGKIPTS-TQLQS 77
           N L   +P   T L+ 
Sbjct: 150 NQLT-MLPELPTSLEV 164

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
              SL  L++ +N LT  +P     L   E ++   N L+  +P    SL    VL++  
Sbjct: 118 LPASLKHLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLPELPTSL---EVLSVRN 169

Query: 63  NNL 65
           N L
Sbjct: 170 NQL 172

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
            L  +N  +N LT  +P    +L   E L +  N L+  +P    SL     L++S N L
Sbjct: 141 LLEYINADNNQLT-MLPELPTSL---EVLSVRNNQLT-FLPELPESL---EALDVSTNLL 192

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
           +++       + N     +      + Q   L L+  NLS  +P  L     ++VL ++ 
Sbjct: 35  KWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQ 89

Query: 63  NNLVGKIPTS-TQLQS 77
           N L+  +P     L+ 
Sbjct: 90  NALI-SLPELPASLEY 104

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  L   +N ++    SS  NL  I  L    N +S   P  LA+L  ++ L L+
Sbjct: 328 SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383

Query: 62  YNNLVGKIPTSTQLQSFSPTSYEGNKGLYGP 92
                          S   T       L  P
Sbjct: 384 DQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
           G   +L  L+++ N L      +  +L  +  LDL+ N +S   P  L+ L  L+ L L 
Sbjct: 218 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273

Query: 62  YNNLVGKIPTS--TQLQSFS 79
            N +    P +  T L +  
Sbjct: 274 ANQISNISPLAGLTALTNLE 293

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
              K+L  L +  N ++   P    +L +++ L    N +S    S LA+L  ++ L+  
Sbjct: 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG 361

Query: 62  YNNLVGKIPTS--TQLQSFS 79
           +N +    P +  T++    
Sbjct: 362 HNQISDLTPLANLTRITQLG 381

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  L +  N ++   P     L  + +L+L+ N L    P  +++L  L+ L L 
Sbjct: 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317

Query: 62  YNNLVGKIPTS--TQLQSFS 79
           +NN+    P S  T+LQ   
Sbjct: 318 FNNISDISPVSSLTKLQRLF 337

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  + M++N +    P    NL  +  L L  N ++   P  L +L  L+ L LS
Sbjct: 87  KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 142

Query: 62  YNNL 65
            N +
Sbjct: 143 SNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 6/78 (7%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                +  L      +          L  +  ++ S N L+   P  L +L  L  + ++
Sbjct: 43  TDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN 98

Query: 62  YNNLVGKIPTS--TQLQS 77
            N +    P +  T L  
Sbjct: 99  NNQIADITPLANLTNLTG 116

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               +L  L ++ N L    P    NLK +  L L  NN+S   P  ++SL  L  L   
Sbjct: 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339

Query: 62  YNNL 65
            N +
Sbjct: 340 NNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 3  QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
                   +    +T ++     +L Q+ +L      +       +  LN L+ +N S 
Sbjct: 22 ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSN 77

Query: 63 NNLVGKIP 70
          N L    P
Sbjct: 78 NQLTDITP 85

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               +L  L++S N ++    S    L  +ESL  + N +S   P  L  L  L  L+L+
Sbjct: 174 ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN 229

Query: 62  YNNL 65
            N L
Sbjct: 230 GNQL 233

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               +L  L +S N ++    S+   L  ++ L    N ++   P  LA+L  L  L++S
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDIS 185

Query: 62  YNNL 65
            N +
Sbjct: 186 SNKV 189

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +    SL  L+  +            NL  +E LD+S N +S    S LA L  L  L  
Sbjct: 152 LSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 206

Query: 61  SYNNLVGKIPTS--TQLQSFS 79
           + N +    P    T L   S
Sbjct: 207 TNNQISDITPLGILTNLDELS 227

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 7/65 (10%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +     +  L ++  A T +  +   N+    ++      L    P+ ++     +  ++
Sbjct: 371 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDI 428

Query: 61  SYNNL 65
           ++N  
Sbjct: 429 TWNLP 433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 2   GQFKSLYALNMSHNALT---GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLAS-LNFLSV 57
            +F +L  L + +  +    G   +      Q++ LDLS N+L     +      + L+ 
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 58  LNLSYNNL 65
           LNLS+  L
Sbjct: 258 LNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 1   MGQFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLN 59
                 L  L++SHN+L  +    S     Q+ SL+LS   L  ++P  L +   LSVL+
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAK--LSVLD 280

Query: 60  LSYNNLVGKIPTSTQLQS 77
           LSYN L    P+  +L  
Sbjct: 281 LSYNRLDR-NPSPDELPQ 297

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 1   MGQFKSLYALNMSHNALTGSI-------PSSFGNLKQIESLDLSMNNLSGKIPSQLASLN 53
           +  F +L  L++S N   G         P  F  L+ +   +  M   SG   +  A+  
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 54  FLSVLNLSYNNLVGKIPTSTQL 75
            L  L+LS+N+L       +  
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCD 250

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L +LN+S   L   +P   G   ++  LDLS N L    PS    L  +  L+L  N 
Sbjct: 253 SQLNSLNLSFTGLK-QVPK--GLPAKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNP 307

Query: 65  LVG 67
            + 
Sbjct: 308 FLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 7/80 (8%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI-------PSQLASLNFLSV 57
             L  L+++                 + +LDLS N   G+        P +  +L  L++
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 58  LNLSYNNLVGKIPTSTQLQS 77
            N       G        + 
Sbjct: 209 RNAGMETPSGVCSALAAARV 228

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQ-IESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               L   N+S       +      LK  ++ L ++  +       Q+     LS L+LS
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181

Query: 62  YNNLVGKIPTSTQLQSFSPTS 82
            N  +G+    + L      +
Sbjct: 182 DNPELGERGLISALCPLKFPT 202

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ--LASLNFLSVLNLSY 62
            SL  L++S N +  ++ S+F  L+Q+E LD   +NL  ++       SL  L  L++S+
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISH 135

Query: 63  NNL 65
            + 
Sbjct: 136 THT 138

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYN 63
           ++L  L++SH     +    F  L  +E L ++ N+            L  L+ L+LS  
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 64  NL 65
            L
Sbjct: 186 QL 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 6   SLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYN 63
           SL  L M+ N+   +     F  L+ +  LDLS   L  ++      SL+ L VLN+S+N
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHN 209

Query: 64  NL 65
           N 
Sbjct: 210 NF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 4  FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK--IPSQLASLNFLSVLNLS 61
            S   L +  N L       F  L Q+  L LS N LS K            L  L+LS
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 62 YNNL 65
          +N +
Sbjct: 87 FNGV 90

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 5   KSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
           ++L  L++S   L   +   +F +L  ++ L++S NN           LN L VL+ S N
Sbjct: 175 RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 64  NL 65
           ++
Sbjct: 234 HI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 6   SLYALNMSHNALTGSIPSS--FGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
            L  L+  H+ L   +     F +L+ +  LD+S  +           L+ L VL ++ N
Sbjct: 102 QLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

Query: 64  NLVGKIPTST 73
           +         
Sbjct: 161 SFQENFLPDI 170

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 6   SLYALNMSHNALT--GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
            L  L++S N L+  G    S      ++ LDLS N +   + S    L  L  L+  ++
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 111

Query: 64  NLVGKIPTST 73
           NL      S 
Sbjct: 112 NLKQMSEFSV 121

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 7e-08
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 18/89 (20%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNF--------- 54
              L  L +S N LT S+P     L ++      + +L   +PS L  L           
Sbjct: 80  PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLP 137

Query: 55  -----LSVLNLSYNNLVGKIPTS-TQLQS 77
                L  L++S N L   +P   ++L  
Sbjct: 138 VLPPGLQELSVSDNQL-ASLPALPSELCK 165

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
               L  L++S N L  S+P+    L     L    N L+  +P   + L     L++S 
Sbjct: 139 LPPGLQELSVSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPMLPSGLQ---ELSVSD 190

Query: 63  NNLVGKIPTS-TQLQS 77
           N L   +PT  ++L  
Sbjct: 191 NQLA-SLPTLPSELYK 205

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
                LN+  + LT ++P        I +L +  NNL+  +P+    L     L +S N 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQ 92

Query: 65  LVGKIPTS-TQLQS 77
           L   +P     L  
Sbjct: 93  LT-SLPVLPPGLLE 105

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 9e-07
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
              L  L++S N L  S+P+    L     L    N L+  +P+  +    L  L +S N
Sbjct: 180 PSGLQELSVSDNQLA-SLPTLPSEL---YKLWAYNNRLT-SLPALPSG---LKELIVSGN 231

Query: 64  NLVGKIPTS-TQLQS 77
            L   +P   ++L+ 
Sbjct: 232 RL-TSLPVLPSELKE 245

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  L   +N LT S+P     L+    L +S N L+  +P+  + L  L   N  
Sbjct: 158 ALPSELCKLWAYNNQLT-SLPMLPSGLQ---ELSVSDNQLA-SLPTLPSELYKLWAYNNR 212

Query: 62  YNNL 65
             +L
Sbjct: 213 LTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
            L  L +S N LT S+P     LK    L +S N L+  +P   + L     L++  N L
Sbjct: 222 GLKELIVSGNRLT-SLPVLPSELK---ELMVSGNRLT-SLPMLPSGL---LSLSVYRNQL 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
            L +L++  N LT  +P S  +L    +++L  N LS +    L  +      +      
Sbjct: 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRF 320

Query: 66  VGKIPTSTQLQ 76
                ++ +  
Sbjct: 321 DMAGASAPRET 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 4  FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSY 62
                L++  N +       F +   +E L+L+ N +S  +      +L  L  L L  
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 63 NNLVGKIPTST 73
          N L   IP   
Sbjct: 90 NRLK-LIPLGV 99

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  L + H  +      SF  L +++ L++S       +         L+ L++++ N
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 65  LVGKIPTST 73
           L   +P   
Sbjct: 236 LT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYN 63
             L  LN+S+N ++    S    L +++ + L    L+  +       LN+L VLN+S N
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGN 306

Query: 64  NL 65
            L
Sbjct: 307 QL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 6   SLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYN 63
           +L +L +  N L   I   +F  L  +E L L   NL+  IP++ L+ L+ L VL L + 
Sbjct: 129 NLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHL 186

Query: 64  NL 65
           N+
Sbjct: 187 NI 188

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 5   KSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
            +L  L +  N L   IP   F  L  +  LD+S N +   +      L  L  L +  N
Sbjct: 80  FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138

Query: 64  NLV 66
           +LV
Sbjct: 139 DLV 141

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSY 62
           F  L  L ++ N ++   P +F NL  + +L L  N L   IP      L+ L+ L++S 
Sbjct: 55  FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISE 113

Query: 63  NNL 65
           N +
Sbjct: 114 NKI 116

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 6   SLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           SL  L +    LT SIP+ +  +L  +  L L   N++         L  L VL +S+  
Sbjct: 153 SLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 65  LVGKIPTST 73
            +  +  + 
Sbjct: 212 YLDTMTPNC 220

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 16/62 (25%), Positives = 24/62 (38%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  + +    L    P +F  L  +  L++S N L+    S   S+  L  L L  N 
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

Query: 65  LV 66
           L 
Sbjct: 332 LA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYN 63
             L  L +SH     ++  +      + SL ++  NL+  +P   +  L +L  LNLSYN
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 64  NL 65
            +
Sbjct: 259 PI 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSY 62
             +   LN+  N +      +F +L  +E L L  N++  +I       L  L+ L L  
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 63  NNL 65
           N L
Sbjct: 133 NWL 135

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 6e-07
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 6   SLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYN 63
            L  L + +N +  SIPS +F  +  +  LDL        I       L  L  LNL   
Sbjct: 148 KLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 64  NLVGKIPTSTQLQSFSPTS 82
           N+         + + +P  
Sbjct: 207 NI-------KDMPNLTPLV 218

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 19/61 (31%), Positives = 27/61 (44%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  L MS N      P SF  L  ++ L +  + +S    +    L  L  LNL++NN
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277

Query: 65  L 65
           L
Sbjct: 278 L 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
           +L  LN+    +   +P+    L  +E L++S N+     P     L+ L  L +  + +
Sbjct: 197 NLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 5   KSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSY 62
            SL  L +  N LT  IPS +F  L ++  L L  N +   IPS     +  L  L+L  
Sbjct: 123 ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE 180

Query: 63  NNLVGKIPTST 73
              +  I    
Sbjct: 181 LKKLEYISEGA 191

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
           SL  L + ++ ++    ++F  L  +  L+L+ NNLS         L +L  L+L +N  
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

Query: 66  V 66
            
Sbjct: 303 N 303

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
           +F+ L  L+  +  LT SI ++   L +++ L+LS N +SG +         L+ LNLS 
Sbjct: 40  EFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97

Query: 63  NNL 65
           N +
Sbjct: 98  NKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNLS 61
           +   L  L +S N ++G +         +  L+LS N +        L  L  L  L+L 
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

Query: 62  YN 63
             
Sbjct: 122 NC 123

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +     L A+   +N+L   +P    +L   ES+    N L      +L +L FL+ +  
Sbjct: 191 LQNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNILE--ELPELQNLPFLTTIYA 244

Query: 61  SYNNL 65
             N L
Sbjct: 245 DNNLL 249

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               SL  LN+S+N L   +P+    L   E L  S N+L+ ++P    +   L  L++ 
Sbjct: 314 DLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQN---LKQLHVE 365

Query: 62  YNNL 65
           YN L
Sbjct: 366 YNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  L +S+N L   +P    N   ++ +D+  N+L  K+P    S   L  +    N 
Sbjct: 131 PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQ 184

Query: 65  LVGKIPTSTQLQS 77
           L  ++P    L  
Sbjct: 185 LE-ELPELQNLPF 196

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               SL  +   +N L   +P    NL  + ++    N+L  K+P    S   L  +   
Sbjct: 170 DLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAG 223

Query: 62  YNNLVGKIPTSTQLQS 77
            N L  ++P    L  
Sbjct: 224 NNILE-ELPELQNLPF 238

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 10  LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI 69
           L  S N+LT  +P    +LK +   + ++  LS   P        L  L +S N L  K+
Sbjct: 96  LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KL 146

Query: 70  PTSTQLQS 77
           P       
Sbjct: 147 PELQNSSF 154

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               SL ++   +N L         NL  + ++    N L   +P    SL  L+V +  
Sbjct: 212 DLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNY 268

Query: 62  YNNLVGKIPTSTQLQ 76
             +L     + T L 
Sbjct: 269 LTDLPELPQSLTFLD 283

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 17/78 (21%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNL-------------KQIESLDLSMNNLSGKIPS 47
               KS      + +    + P   G               +Q   L+L+   LS  +P 
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE 88

Query: 48  QLASLNFLSVLNLSYNNL 65
               L     L  S N+L
Sbjct: 89  LPPHLE---SLVASCNSL 103

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
             +LY LN S N +  S+     +L   E L++S N L  ++P+       L  L  S+N
Sbjct: 296 PPNLYYLNASSNEIR-SLCDLPPSL---EELNVSNNKLI-ELPALPPR---LERLIASFN 347

Query: 64  NL 65
           +L
Sbjct: 348 HL 349

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 9/69 (13%), Positives = 15/69 (21%), Gaps = 14/69 (20%)

Query: 10 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASL-------------NFLS 56
               + LT  +P    N+K       + +      P                       
Sbjct: 16 PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 57 VLNLSYNNL 65
           L L+   L
Sbjct: 75 ELELNNLGL 83

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 18/87 (20%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNF----------- 54
           SL ALN+  N LT  +P    +L  ++  +   + LS ++P  L  LN            
Sbjct: 258 SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRSLCDL 315

Query: 55  ---LSVLNLSYNNLVGKIPTS-TQLQS 77
              L  LN+S N L+ ++P    +L+ 
Sbjct: 316 PPSLEELNVSNNKLI-ELPALPPRLER 341

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
             ++L  L++ +N L    P    +++     DL MN+   ++P    +L     L++  
Sbjct: 355 LPQNLKQLHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQNL---KQLHVET 405

Query: 63  NNL 65
           N L
Sbjct: 406 NPL 408

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 2   GQFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           G   SL  L++  N +T  + + S   L  +  L LS N++S      LA+   L  L+L
Sbjct: 189 GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 61  SYNNL 65
           + N L
Sbjct: 248 NNNKL 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNL-SGKIPSQ-LASLNFLSVL 58
              K+L  L +  N +T  +    F  L Q+  ++L  N L S  I +     +  LS +
Sbjct: 118 KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 59  NLSYNNLVGKIPTST 73
            ++  N+   IP   
Sbjct: 177 RIADTNIT-TIPQGL 190

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG------KIPSQLASLNFLSVLN 59
            L  L++++N L   +P    + K I+ + L  NN+S         P         S ++
Sbjct: 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299

Query: 60  LSYNNL 65
           L  N +
Sbjct: 300 LFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
                 L++ +N +T      F NLK + +L L  N +S   P   A L  L  L LS N
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 64  NLVGKIPTST 73
            L  ++P   
Sbjct: 111 QLK-ELPEKM 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYN 63
             L  L +S N L   +P      K ++ L +  N ++ K+       LN + V+ L  N
Sbjct: 100 VKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTN 155

Query: 64  NL 65
            L
Sbjct: 156 PL 157

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSY 62
             +   LN+  N +     +SF +L+ +E L LS N++   I       L  L+ L L  
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 63  NNL 65
           N L
Sbjct: 122 NRL 124

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
            L  L++S N L+   P SF  L  ++ L +  + +     +   +L  L  +NL++NNL
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 5   KSLYALNMSH-NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
            SL  L++     L+     +F  L  +  L+L+M NL  +IP+ L  L  L  L+LS N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGN 217

Query: 64  NL 65
           +L
Sbjct: 218 HL 219

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 6   SLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNLSYN 63
           +L  L +  N LT +IP+ +F  L +++ L L  N +   IPS     +  L  L+L   
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL 170

Query: 64  NLVGKIPTST 73
             +  I    
Sbjct: 171 KRLSYISEGA 180

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYNN 64
           +L  LN++   L   IP+    L +++ LDLS N+LS  I       L  L  L +  + 
Sbjct: 186 NLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQ 242

Query: 65  L 65
           +
Sbjct: 243 I 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  L M  + +     ++F NL+ +  ++L+ NNL+         L+ L  ++L +N 
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290

Query: 65  LV 66
             
Sbjct: 291 WN 292

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
            +F +L  L++ +  L  S+ S+   L +++ L+LS N + G +      L  L+ LNLS
Sbjct: 46  AEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 62  YNNL 65
            N L
Sbjct: 104 GNKL 107

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSY 62
             +   + +  N ++    +SF   + +  L L  N L+ +I +     L  L  L+LS 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 63  NNLVGKIPTST 73
           N  +  +  +T
Sbjct: 90  NAQLRSVDPAT 100

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 5   KSLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSY 62
             L  L++S NA   S+  + F  L ++ +L L    L  ++       L  L  L L  
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQD 138

Query: 63  NNL 65
           N L
Sbjct: 139 NAL 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 6   SLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           +L  L +  NAL  ++P  +F +L  +  L L  N +S         L+ L  L L  N 
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 65  L 65
           +
Sbjct: 189 V 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
           +L  L +  N ++     +F  L  ++ L L  N ++   P     L  L  L L  NNL
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 6   SLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           SL  L +  N +   +   +F +L ++ +L L  NNLS      LA L  L  L L+ N 
Sbjct: 178 SLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 65  LV 66
            V
Sbjct: 237 WV 238

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 8e-07
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGN---LKQIESLDLSMNNLSGK----IPSQLASLNF 54
            +F +L  L +        +   F     L Q+E++D+S   L+ +    +   +  +  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 55  LSVLNLSYNNL 65
           L  +N+ YN L
Sbjct: 309 LKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 5   KSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKIPSQLAS 51
             L  +++S   LT      +      +K ++ +++  N LS ++  +L  
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
                A++ S N +   +   F  L+++++L ++ N +         +L  L+ L L+ N
Sbjct: 41  LDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 64  NL 65
           +L
Sbjct: 99  SL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNLSY 62
            + L  L +++N +          L  +  L L+ N+L        LASL  L+ L +  
Sbjct: 63  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

Query: 63  N 63
           N
Sbjct: 123 N 123

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 5   KSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSY 62
            +L++L +SHN L   I S +F  +  +  LDLS N+L   +     + L  L VL L  
Sbjct: 64  TNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYN 121

Query: 63  NNL 65
           N++
Sbjct: 122 NHI 124

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 6   SLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIP----SQLASLNFLSVLNL 60
           +L  L + +N +   +   +F ++ Q++ L LS N +S + P         L  L +L+L
Sbjct: 113 ALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDL 170

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNKGLY 90
           S N L         L            GLY
Sbjct: 171 SSNKL-----KKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 5   KSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPS-QLASLNFLSVLNLSY 62
            +L  L++S N L  ++    F +L+ +E L L  N++   +       +  L  L LS 
Sbjct: 88  PNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQ 145

Query: 63  NNL 65
           N +
Sbjct: 146 NQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 10  LNMSHNALTGSIPS--SFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYNNL 65
           L++SHN L+  + +  +   L  + SL LS N+L+  I S+    +  L  L+LS N+L
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL 100

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 5   KSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
           ++L  L + +      +       L ++ +L +  + L    P        LS LNLS+N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 64  NLVGKIPTSTQLQSFSPTS 82
            L      S   ++    S
Sbjct: 91  AL-----ESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 6/53 (11%), Positives = 13/53 (24%), Gaps = 1/53 (1%)

Query: 14 HNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYNNL 65
                         + +  L +        +  + L  L  L  L +  + L
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPSS--FGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLN 59
               +L  L++S NA   ++P    FGN+ Q++ L LS  +L       +A LN   VL 
Sbjct: 87  HPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145

Query: 60  LSYNNLVGKIPTST 73
           +       K     
Sbjct: 146 VLGETYGEKEDPEG 159

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 5  KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
          +    LN+S N ++    S   +L ++  L +S N +     S       L  L+LS+N 
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 65 L 65
          L
Sbjct: 81 L 81

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS--GKIPSQLASLNFLSVLN 59
            +      L+ S+N LT ++  + G+L ++E+L L MN L    KI      +  L  L+
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 60  LSYNNL 65
           +S N++
Sbjct: 381 ISQNSV 386

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
            L  L +SHN +     S F   +++E LDLS N L  KI         L  L+LS+N  
Sbjct: 46  KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAF 102

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 3   QFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
           Q KSL  L++S N+++           K + SL++S N L+  I   L     + VL+L 
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLH 429

Query: 62  YNNL 65
            N +
Sbjct: 430 SNKI 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 13/63 (20%), Positives = 20/63 (31%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
            F ++   N + +            +     LD S N L+  +      L  L  L L  
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 63  NNL 65
           N L
Sbjct: 358 NQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL-SGKIPSQLASLNFLSVLNLSYN 63
           + L  L++SHN L   I         ++ LDLS N   +  I  +  +++ L  L LS  
Sbjct: 69  QELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125

Query: 64  NL 65
           +L
Sbjct: 126 HL 127

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 10 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNLSYNNL 65
          +++S N++     +SF  L+ ++ L +        I +     L+ L +L L YN  
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 6   SLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYN 63
            +   ++S + +  ++    F +   +E L L+ N ++ KI       L  L  LNLS N
Sbjct: 276 GVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN 333

Query: 64  NL 65
            L
Sbjct: 334 FL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 4   FKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLS 61
            + L  L +        I + +F  L  +  L L  N    ++ +     L  L VL L+
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLT 111

Query: 62  YNNL 65
             NL
Sbjct: 112 QCNL 115

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 5   KSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNLSY 62
             L  LN+S N L  SI S  F NL ++E LDLS N++   +  Q    L  L  L L  
Sbjct: 323 THLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDT 380

Query: 63  NNL 65
           N L
Sbjct: 381 NQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 2   GQFKSLYA---LNMSHNALTGSI--PSSFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFL 55
           G F  L     L ++   L G++   + F  L  +E L L  NN+    P+    ++   
Sbjct: 97  GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156

Query: 56  SVLNLSYNNL 65
            VL+L++N +
Sbjct: 157 HVLDLTFNKV 166

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 3   QFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
            F  L  L ++ N +   I   +F  L  +  L+LS N L         +L+ L VL+LS
Sbjct: 297 HFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355

Query: 62  YNNL 65
           YN++
Sbjct: 356 YNHI 359

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 6   SLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNL-SGKIPSQL-ASLNFLSVLNLSY 62
           SL  L + +N     + +  F  L  +E L L+  NL    +       L  L +L L  
Sbjct: 80  SLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 63  NNL 65
           NN+
Sbjct: 139 NNI 141

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 7/85 (8%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNLSYNN 64
            L  L +  + L    P S  +++ +  L L M      +        + +  L L   +
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTD 233

Query: 65  LVGKIPTSTQLQSFSPTSYEGNKGL 89
           L      +      S          
Sbjct: 234 L-----DTFHFSELSTGETNSLIKK 253

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 5   KSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
             L  L + +      I    F  L  +E L++  ++L    P  L S+  +S L L   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208

Query: 64  NL 65
             
Sbjct: 209 QH 210

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNLSY 62
            +++ +L++S+N +T    S       +++L L+ N ++  I     +SL  L  L+LSY
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 63  NNL 65
           N L
Sbjct: 110 NYL 112

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 1/60 (1%)

Query: 6   SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
           +   + ++  +L   +      +  +  L+ S N L          L  L  + L  N  
Sbjct: 255 TFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 6   SLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIP-SQLASLNFLSVLNLSYN 63
           SL  L++S+N L+ ++ SS F  L  +  L+L  N        S  + L  L +L +   
Sbjct: 101 SLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159

Query: 64  NLVGKIP 70
           +   KI 
Sbjct: 160 DTFTKIQ 166

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNL 60
           G    L  L++SHN L  S+P     L  +  LD+S N L+  +P      L  L  L L
Sbjct: 74  GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131

Query: 61  SYNNL 65
             N L
Sbjct: 132 KGNEL 136

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
            +  L  LN+    LT  +    G L  + +LDLS N L   +P    +L  L+VL++S+
Sbjct: 53  PYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 63  NNL 65
           N L
Sbjct: 110 NRL 112

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 6   SLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           +L  L++S N LT S+P      L +++ L L  N L    P  L     L  L+L+ NN
Sbjct: 101 ALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159

Query: 65  L 65
           L
Sbjct: 160 L 160

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
               L +L + +N +T    +    L ++++L L  N +S  I   LA L  L  L LS 
Sbjct: 129 HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK 184

Query: 63  NNL 65
           N++
Sbjct: 185 NHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 3  QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
           F      N+   ++T ++      L  I+ +  + +++   +   +  L  ++ L L+ 
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74

Query: 63 NNL 65
          N L
Sbjct: 75 NKL 77

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.9 bits (95), Expect = 8e-05
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 3  QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
          +  S+  +  +++ +  S+      L  +  L L+ N L+  I   L +L  L  L L  
Sbjct: 41 ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDE 96

Query: 63 NNL 65
          N +
Sbjct: 97 NKI 99

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.9 bits (95), Expect = 9e-05
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
              K+L  L +  N +   + SS  +LK+++SL L  N +S  I   L  L  L  L L 
Sbjct: 84  TNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLG 139

Query: 62  YNNL 65
            N +
Sbjct: 140 NNKI 143

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           K L +L++ HN ++  I +   +L Q+ESL L  N ++  I   L+ L  L  L+L  N 
Sbjct: 109 KKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQ 164

Query: 65  L 65
           +
Sbjct: 165 I 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  L++  N ++  I      L ++++L LS N++S      LA L  L VL L    
Sbjct: 153 TKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQE 208

Query: 65  LVGKIP 70
            + K  
Sbjct: 209 CLNKPI 214

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +    ++  L ++ N LT  I     NLK +  L L  N +   + S L  L  L  L+L
Sbjct: 61  IQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSL 116

Query: 61  SYNNL 65
            +N +
Sbjct: 117 EHNGI 121

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 6   SLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIP--SQLASLNFLSVLNLSY 62
            +  + + +      I       L  ++ L +    L    P  +++ S +   +L ++ 
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITD 139

Query: 63  NNLVGKIPTST 73
           N  +  IP + 
Sbjct: 140 NPYMTSIPVNA 150

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP----SQLASLNFLSVLNL 60
                L + +N  T S+     N  +++++ L+ N     I       + S    S+L++
Sbjct: 156 NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG--PSLLDV 212

Query: 61  SYNNL 65
           S  ++
Sbjct: 213 SQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 4   FKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLS 61
             ++  + +S +     + S SF NL ++  +++        I    L  L  L  L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 62  YNNLVGKIPTSTQLQS 77
              L    P  T++ S
Sbjct: 114 NTGLK-MFPDLTKVYS 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
             K+   L +S N +   I SS   ++ +  L L  N +  KI +  A  + L  L +SY
Sbjct: 46  TLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISY 102

Query: 63  NNL 65
           N +
Sbjct: 103 NQI 105

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNLSYN 63
            +L  L +S+N +  S+ S    L  +  L +S N ++      +LA+L+ L  L L+ N
Sbjct: 93  DTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

Query: 64  NLVGKIPTSTQLQ 76
            L      +    
Sbjct: 151 PLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           ++L  L++  N +   I +       +E L +S N ++  + S +  L  L VL +S N 
Sbjct: 70  ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNK 126

Query: 65  L 65
           +
Sbjct: 127 I 127

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 10 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
          L+     +   + ++   LK  + L LS NN+  KI S L+ +  L +L+L  N +
Sbjct: 30 LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI 82

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 4  FKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLS 61
           ++   L      L   I   +F     +E +++S N++   I +   ++L  L  + + 
Sbjct: 29 PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 62 YNNLVGKIPTST 73
            N +  I    
Sbjct: 88 KANNLLYINPEA 99

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +    +L  L +  N +T +I S    L  ++ L +    +S  +   LA+L+ L+ L  
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKA 180

Query: 61  SYNNL 65
             N +
Sbjct: 181 DDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                +  L +S N L  ++ S+   L+ I++LDL+   ++   P  LA L+ L VL L 
Sbjct: 82  KNLTKITELELSGNPLK-NV-SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLD 137

Query: 62  YNNL 65
            N +
Sbjct: 138 LNQI 141

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               +L  L++ +  ++  + +   NL ++ +L    N +S  I   LASL  L  ++L 
Sbjct: 148 AGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLK 203

Query: 62  YNNL 65
            N +
Sbjct: 204 NNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +    +L  L +  N +T  + +   NL +I  L+LS N L   + + +A L  +  L+L
Sbjct: 59  VQYLNNLIGLELKDNQIT-DL-APLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDL 114

Query: 61  SYNNL 65
           +   +
Sbjct: 115 TSTQI 119

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 3  QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
             +   +    + +T     +  +L  I +L      ++  I   +  LN L  L L  
Sbjct: 17 ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 63 NNL 65
          N +
Sbjct: 73 NQI 75

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 2  GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
               +  L+     +T +I      L  +  L+L  N ++  +   L +L  ++ L LS
Sbjct: 38 ADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELS 93

Query: 62 YNNL 65
           N L
Sbjct: 94 GNPL 97

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 10 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNLSYNNL 65
          L++S N L      SF +  +++ LDLS   +   I      SL+ LS L L+ N +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 6   SLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNL-SGKIPSQLASLNFLSVLNLSYN 63
           SL  L      L  S+ +   G+LK ++ L+++ N + S K+P   ++L  L  L+LS N
Sbjct: 101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 64  NL 65
            +
Sbjct: 160 KI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 3   QFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLAS-LNFLSVLNL 60
               L  L ++ N +  S+   +F  L  ++ L     NL+  + +     L  L  LN+
Sbjct: 74  SLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131

Query: 61  SYNNL 65
           ++N +
Sbjct: 132 AHNLI 136

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 5   KSLYALNMSHNALTGSIPSS--FGNLKQIESLDLSMNNLSGKIP----SQLASLNFLSV- 57
           K+L  LN++HN +  S      F NL  +E LDLS N +   I       L  +  L++ 
Sbjct: 124 KTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS 181

Query: 58  LNLSYNNL 65
           L+LS N +
Sbjct: 182 LDLSLNPM 189

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           + Q   L  L+ S N LT  I      L Q+   D S+N L+    S L+ L     L+ 
Sbjct: 208 LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLT---TLHC 261

Query: 61  SYNNL 65
              +L
Sbjct: 262 IQTDL 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
            +   L  L  + N +T ++         +  L    N L+  +   +  L  L+ LN  
Sbjct: 61  EKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCD 114

Query: 62  YNNL 65
            N L
Sbjct: 115 TNKL 118

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
            Q   L  L +++  LT  +     +  +++SL     ++     S +  +  L+    +
Sbjct: 315 SQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEA 369

Query: 62  YNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLT 95
               +     +    S +          +G P+ 
Sbjct: 370 EGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
            Q  +L  L    N LT ++      L ++  L+   N L+    SQ      L+ LN +
Sbjct: 82  SQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPL---LTYLNCA 135

Query: 62  YNNL 65
            N L
Sbjct: 136 RNTL 139

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  L+   N     +        Q+ +LD S N ++    SQ   LN    LN  
Sbjct: 145 SHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQNKLLN---RLNCD 199

Query: 62  YNNL 65
            NN+
Sbjct: 200 TNNI 203

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  L+ S N +T  +       K +  L+   NN++ K+   L     L+ L+ S
Sbjct: 167 TPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCS 220

Query: 62  YNNL 65
            N L
Sbjct: 221 SNKL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 3  QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
          Q  +L +L+  ++++T  +      L  +  L  + NN++  +   L+    L+ L    
Sbjct: 40 QLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDS 94

Query: 63 NNL 65
          N L
Sbjct: 95 NKL 97

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
             K L +L++ HN ++  I +   +L Q+ESL L  N ++  I   L+ L  L  L+L  
Sbjct: 110 DLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLED 165

Query: 63  NNL 65
           N +
Sbjct: 166 NQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
               L +L + +N +T  I +    L ++++L L  N +S  I   LA L  L  L LS 
Sbjct: 132 HLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSK 187

Query: 63  NNL 65
           N++
Sbjct: 188 NHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
             K+L  L +  N +   + SS  +LK+++SL L  N +S  I   L  L  L  L L  
Sbjct: 88  NLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGN 143

Query: 63  NNL 65
           N +
Sbjct: 144 NKI 146

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
           +  S+  +  +++ +  S+      L  +  L L+ N L+  I   LA+L  L  L L  
Sbjct: 44  ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDE 99

Query: 63  NNL 65
           N +
Sbjct: 100 NKV 102

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 3  QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
           F      N+   ++T     +   L  I+ +  + +++   +   +  L  ++ L L+ 
Sbjct: 22 AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 63 NNL 65
          N L
Sbjct: 78 NKL 80

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
               L  L + +N L      S  +LK +E L +  N L   I   L  L+ L VL+L  
Sbjct: 104 PSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHG 159

Query: 63  NNL 65
           N +
Sbjct: 160 NEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 3  QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
             +    N+   ++T     S   L  +++ +   +N+   +   +     L  L+LS+
Sbjct: 17 GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSH 72

Query: 63 NNL 65
          N +
Sbjct: 73 NQI 75

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           K+L  L++ +N L  SI    G L ++E LDL  N ++      L  L  ++ ++L+   
Sbjct: 128 KNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183

Query: 65  LV 66
            V
Sbjct: 184 CV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 3  QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
          +   +   N  ++ +  S+ +       ++ L LS N +S  + S L  L  L  L+++ 
Sbjct: 39 ELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNR 94

Query: 63 NNL 65
          N L
Sbjct: 95 NRL 97

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 14/61 (22%), Positives = 22/61 (36%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
             L  +N S+N +T     +F     +  + L+ N L          L  L  L L  N 
Sbjct: 57  PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116

Query: 65  L 65
           +
Sbjct: 117 I 117

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
           +S+  LN+S N LTGS+        +++ LDL  N +   IP  +  L  L  LN++ N 
Sbjct: 428 ESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484

Query: 65  L 65
           L
Sbjct: 485 L 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 6   SLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
            L  L +SHN +  S+    F   + +E LD+S N L   I      +  L  L+LS+N+
Sbjct: 77  ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFND 132

Query: 65  L 65
            
Sbjct: 133 F 133

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS--GKIPSQLASLNFLSVLN 59
               S   LN + N  T S+      LK++++L L  N L    K+     +++ L  L+
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 60  LSYNNL 65
           +S N+L
Sbjct: 410 VSLNSL 415

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.5 bits (87), Expect = 9e-04
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNL-SGKIPSQLASLNFLSVLNLSYN 63
           + L  L++SHN L  +I      +  +  LDLS N+     +  +  +L  L+ L LS  
Sbjct: 100 QDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156

Query: 64  NL 65
             
Sbjct: 157 KF 158

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 5   KSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
           K L  +++S+N ++  +   +F  L+ + SL L  N ++    S    L  L +L L+ N
Sbjct: 56  KKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 114

Query: 64  NL 65
            +
Sbjct: 115 KI 116

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 37.3 bits (87), Expect = 9e-04
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 3   QFKSLYALNMSHNALTGSIPSS-FGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNL 60
             +SL +L +  N +T  +P S F  L  ++ L L+ N ++  +       L+ L++L+L
Sbjct: 78  GLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSL 135

Query: 61  SYNNL 65
             N L
Sbjct: 136 YDNKL 140

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 5   KSLYALNMSHNALT-----GSIPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFL 55
           + L+ + M  N +        +       ++++ LDL  N  +      +   L S   L
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246

Query: 56  SVLNLSYNNL 65
             L L+   L
Sbjct: 247 RELGLNDCLL 256

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 10 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNLSYNNL 65
          L +  N  T  +P    N K +  +DLS N +S  + +Q  +++  L  L LSYN L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL 90

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 5   KSLYALNMSHNALTGSIPSSFGN-LK----QIESLDLSMNNLSGK----IPSQLASLNFL 55
            +L  LN+  N L           L+    +I+ L L    L+G     + S L +L  L
Sbjct: 56  PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 115

Query: 56  SVLNLSYNNL 65
             L+LS N L
Sbjct: 116 QELHLSDNLL 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.53
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.52
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.46
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.44
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.42
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.41
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.39
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.37
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.37
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.37
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.36
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.33
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.33
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.31
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.31
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.3
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.29
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.29
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.28
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.27
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.27
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.23
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.23
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.23
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.2
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.2
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.2
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.17
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.13
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.12
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.1
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.1
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.1
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.03
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.02
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.02
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.02
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.01
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.99
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.98
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.96
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.96
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.95
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.94
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.93
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.91
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.9
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.89
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.89
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.83
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.8
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.77
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.77
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.75
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.71
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.66
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.63
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.6
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.53
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.51
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.48
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.41
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.4
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.4
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.91
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.83
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.81
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.63
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.6
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.56
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.52
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.52
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.44
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.98
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.34
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.05
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.19
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.03
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.91
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.85
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.61
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.02
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.01
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	91.49
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.01
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	90.82
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	87.14
2l9u_A	40	Receptor tyrosine-protein kinase ERBB-3; transmenb	83.16
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	82.93

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=2.2e-18  Score=143.64  Aligned_cols=99  Identities=40%  Similarity=0.762  Sum_probs=90.3

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l   81 (163)
                      ++++.|+.|+|++|+++|.+|+.++++++|+.||+++|+++|.+|..+..+++|+.||+++|+++|.+|...++.++...
T Consensus       653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~  732 (768)
T 3rgz_A          653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA  732 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGG
T ss_pred             hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999899999999


Q ss_pred             cccCCCCCCCCCCCCCCCCC
Q 031242           82 SYEGNKGLYGPPLTNESQTR  101 (163)
Q Consensus        82 ~~~~n~~lc~~~~~~~c~~~  101 (163)
                      .+.||+++||.|.. .|...
T Consensus       733 ~~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          733 KFLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             GGCSCTEEESTTSC-CCCSC
T ss_pred             HhcCCchhcCCCCc-CCCCC
Confidence            99999999999876 88654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.56  E-value=2.3e-15  Score=113.33  Aligned_cols=96  Identities=36%  Similarity=0.618  Sum_probs=86.8

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCc
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP   80 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~   80 (163)
                      +..+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|....++++..
T Consensus       217 ~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~  295 (313)
T 1ogq_A          217 FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV  295 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCG
T ss_pred             HhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccCh
Confidence            35788999999999999966555 88899999999999999999999999999999999999999999998888999999


Q ss_pred             ccccCCCCCCCCCCCCCC
Q 031242           81 TSYEGNKGLYGPPLTNES   98 (163)
Q Consensus        81 l~~~~n~~lc~~~~~~~c   98 (163)
                      +++.+|+++|+.|.. .|
T Consensus       296 l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          296 SAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GGTCSSSEEESTTSS-CC
T ss_pred             HHhcCCCCccCCCCC-CC
Confidence            999999999997764 46

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=4e-15  Score=104.70  Aligned_cols=91  Identities=26%  Similarity=0.351  Sum_probs=79.5

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      +.+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|.. ..+.+++.
T Consensus        51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (192)
T 1w8a_A           51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence            46788999999999999877888999999999999999999777777889999999999999999887754 67888999


Q ss_pred             ccccCCCCCCCC
Q 031242           81 TSYEGNKGLYGP   92 (163)
Q Consensus        81 l~~~~n~~lc~~   92 (163)
                      +++++|++.|..
T Consensus       131 L~L~~N~l~c~c  142 (192)
T 1w8a_A          131 LNLASNPFNCNC  142 (192)
T ss_dssp             EECTTCCBCCSG
T ss_pred             EEeCCCCccCcC
Confidence            999999988863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=1.2e-14  Score=102.38  Aligned_cols=90  Identities=24%  Similarity=0.282  Sum_probs=77.1

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~   80 (163)
                      .++++|+.|++++|.+++..+..|.++++|+.|++++|.+++..|..|..+++|+.|++++|+++..++. ...+.+++.
T Consensus        51 ~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (193)
T 2wfh_A           51 SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH  130 (193)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence            4578899999999999976667889999999999999999977777888999999999999999977765 367888999


Q ss_pred             ccccCCCCCCC
Q 031242           81 TSYEGNKGLYG   91 (163)
Q Consensus        81 l~~~~n~~lc~   91 (163)
                      +++++|++.|.
T Consensus       131 L~L~~N~~~C~  141 (193)
T 2wfh_A          131 LAIGANPLYCD  141 (193)
T ss_dssp             EECCSSCEECS
T ss_pred             EEeCCCCeecC
Confidence            99999998885

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=2.4e-14  Score=98.89  Aligned_cols=89  Identities=24%  Similarity=0.177  Sum_probs=79.7

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTS   82 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~   82 (163)
                      .++|+.|++++|.+++..|..|.++++|++|++++|++++..|..|..+++|+.|++++|++++.++. ...+.+|+.++
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            36799999999999977788899999999999999999966566678999999999999999998876 46789999999


Q ss_pred             ccCCCCCCCC
Q 031242           83 YEGNKGLYGP   92 (163)
Q Consensus        83 ~~~n~~lc~~   92 (163)
                      +++|++.|..
T Consensus       109 L~~N~~~c~c  118 (170)
T 3g39_A          109 LLNNPWDCAC  118 (170)
T ss_dssp             CCSSCBCTTB
T ss_pred             eCCCCCCCCc
Confidence            9999998864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.53  E-value=3.2e-15  Score=125.81  Aligned_cols=84  Identities=27%  Similarity=0.357  Sum_probs=46.9

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~   83 (163)
                      +++|+.|+|++|.+++..|..+.++++|+.|++++|++++..|..+.  ++|+.|++++|++++.+|..  +.++..+++
T Consensus       479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l  554 (844)
T 3j0a_A          479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDI  554 (844)
T ss_dssp             BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEE
T ss_pred             cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEe
Confidence            34445555555555544444455555555555555555533232222  45555555555555555543  457788889


Q ss_pred             cCCCCCCC
Q 031242           84 EGNKGLYG   91 (163)
Q Consensus        84 ~~n~~lc~   91 (163)
                      ++|++.|.
T Consensus       555 ~~Np~~C~  562 (844)
T 3j0a_A          555 THNKFICE  562 (844)
T ss_dssp             EEECCCCS
T ss_pred             cCCCcccc
Confidence            99999994

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.53  E-value=2e-14  Score=103.18  Aligned_cols=90  Identities=18%  Similarity=0.187  Sum_probs=65.2

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      .++++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++.+|.. ..+.+++.
T Consensus        78 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  157 (220)
T 2v70_A           78 EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST  157 (220)
T ss_dssp             TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred             CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence            45667777777777777555556777777777777777777666777777777777777777777775543 56677777


Q ss_pred             ccccCCCCCCC
Q 031242           81 TSYEGNKGLYG   91 (163)
Q Consensus        81 l~~~~n~~lc~   91 (163)
                      +++++|++.|.
T Consensus       158 L~L~~N~l~c~  168 (220)
T 2v70_A          158 LNLLANPFNCN  168 (220)
T ss_dssp             EECCSCCEECS
T ss_pred             EEecCcCCcCC
Confidence            77888877765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=2.9e-14  Score=98.89  Aligned_cols=89  Identities=20%  Similarity=0.160  Sum_probs=78.8

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTS   82 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~   82 (163)
                      .++|+.|++++|++++..|..+.++++|+.|++++|++++..+..|..+++|+.|++++|++++.++. ...+.+|+.++
T Consensus        32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            36799999999999987788999999999999999999954445578999999999999999988876 57789999999


Q ss_pred             ccCCCCCCCC
Q 031242           83 YEGNKGLYGP   92 (163)
Q Consensus        83 ~~~n~~lc~~   92 (163)
                      +.+|++.|.+
T Consensus       112 L~~N~~~c~~  121 (174)
T 2r9u_A          112 LYNNPWDCEC  121 (174)
T ss_dssp             CCSSCBCTTB
T ss_pred             eCCCCccccc
Confidence            9999988864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.52  E-value=2.3e-14  Score=115.89  Aligned_cols=91  Identities=22%  Similarity=0.287  Sum_probs=82.7

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-ccc-CCC
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQL-QSF   78 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l-~~l   78 (163)
                      +..+++|++|++++|++++..|..|.++++|+.|++++|++++..|..+..+++|+.|++++|++++.+|.. ..+ .+|
T Consensus       490 ~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L  569 (635)
T 4g8a_A          490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL  569 (635)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTC
T ss_pred             hhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcC
Confidence            457889999999999999888899999999999999999999877888999999999999999999998875 344 689


Q ss_pred             CcccccCCCCCCC
Q 031242           79 SPTSYEGNKGLYG   91 (163)
Q Consensus        79 ~~l~~~~n~~lc~   91 (163)
                      +.+++++||+.|.
T Consensus       570 ~~L~L~~Np~~C~  582 (635)
T 4g8a_A          570 AFLNLTQNDFACT  582 (635)
T ss_dssp             CEEECTTCCBCCS
T ss_pred             CEEEeeCCCCccc
Confidence            9999999999996

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=6.8e-14  Score=100.40  Aligned_cols=90  Identities=21%  Similarity=0.182  Sum_probs=57.3

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~   80 (163)
                      .++++|++|+|++|.++...+..|..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.++. ...+.+++.
T Consensus        77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  156 (220)
T 2v9t_B           77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT  156 (220)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence            4456666666666666633333356666666666666666655566666667777777777777766654 345666777


Q ss_pred             ccccCCCCCCC
Q 031242           81 TSYEGNKGLYG   91 (163)
Q Consensus        81 l~~~~n~~lc~   91 (163)
                      +++.+|++.|.
T Consensus       157 L~L~~N~~~c~  167 (220)
T 2v9t_B          157 MHLAQNPFICD  167 (220)
T ss_dssp             EECCSSCEECS
T ss_pred             EEeCCCCcCCC
Confidence            77777777664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.49  E-value=5.7e-14  Score=106.77  Aligned_cols=91  Identities=21%  Similarity=0.152  Sum_probs=80.8

Q ss_pred             CCCCCCCCeEEccC-CCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCC
Q 031242            1 MGQFKSLYALNMSH-NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS   79 (163)
Q Consensus         1 l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~   79 (163)
                      ++.+++|+.|+|++ |.+++..|..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++.++.......|+
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~  106 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ  106 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence            35678899999996 99997666889999999999999999998888899999999999999999998887765444599


Q ss_pred             cccccCCCCCCC
Q 031242           80 PTSYEGNKGLYG   91 (163)
Q Consensus        80 ~l~~~~n~~lc~   91 (163)
                      .+.+.+|++.|.
T Consensus       107 ~l~l~~N~~~c~  118 (347)
T 2ifg_A          107 ELVLSGNPLHCS  118 (347)
T ss_dssp             EEECCSSCCCCC
T ss_pred             EEEeeCCCccCC
Confidence            999999999885

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.48  E-value=1.4e-13  Score=99.21  Aligned_cols=89  Identities=24%  Similarity=0.292  Sum_probs=62.0

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      ..+++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++.++.. ..+.+++.
T Consensus        85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  163 (229)
T 3e6j_A           85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH  163 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence            45666777777777777444455667777777777777777 66777777777777777777777666543 55677777


Q ss_pred             ccccCCCCCCC
Q 031242           81 TSYEGNKGLYG   91 (163)
Q Consensus        81 l~~~~n~~lc~   91 (163)
                      +++.+|++.|.
T Consensus       164 L~l~~N~~~c~  174 (229)
T 3e6j_A          164 AYLFGNPWDCE  174 (229)
T ss_dssp             EECTTSCBCTT
T ss_pred             EEeeCCCccCC
Confidence            77888877765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.47  E-value=2e-13  Score=94.52  Aligned_cols=88  Identities=22%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l   81 (163)
                      .+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.++.. ..+.+++.+
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  129 (177)
T 2o6r_A           50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI  129 (177)
T ss_dssp             TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence            3444555555555554333333444555555555555554333333444455555555555554444332 334444555


Q ss_pred             cccCCCCCC
Q 031242           82 SYEGNKGLY   90 (163)
Q Consensus        82 ~~~~n~~lc   90 (163)
                      ++++|+..|
T Consensus       130 ~l~~N~~~~  138 (177)
T 2o6r_A          130 WLHTNPWDC  138 (177)
T ss_dssp             ECCSSCBCC
T ss_pred             EecCCCeec
Confidence            555554444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.46  E-value=5.8e-14  Score=117.09  Aligned_cols=88  Identities=33%  Similarity=0.513  Sum_probs=82.1

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      +.+++|+.||+++|+++|.+|..++++++|+.|++++|.++|.+|..++.+++|+.||+++|+++|.+|.. ..+..|+.
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            45788999999999999999999999999999999999999999999999999999999999999999876 77889999


Q ss_pred             ccccCCCCC
Q 031242           81 TSYEGNKGL   89 (163)
Q Consensus        81 l~~~~n~~l   89 (163)
                      +++++|+..
T Consensus       709 L~ls~N~l~  717 (768)
T 3rgz_A          709 IDLSNNNLS  717 (768)
T ss_dssp             EECCSSEEE
T ss_pred             EECcCCccc
Confidence            999998643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.44  E-value=5.4e-13  Score=94.53  Aligned_cols=89  Identities=26%  Similarity=0.212  Sum_probs=47.9

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l   81 (163)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++.++.. ..+.+++.+
T Consensus        74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  153 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence            4455555555555555333333455555555555555555333334555556666666666655554432 445556666


Q ss_pred             cccCCCCCCC
Q 031242           82 SYEGNKGLYG   91 (163)
Q Consensus        82 ~~~~n~~lc~   91 (163)
                      ++++|++.|.
T Consensus       154 ~l~~N~~~~~  163 (208)
T 2o6s_A          154 WLHDNPWDCT  163 (208)
T ss_dssp             ECCSCCBCCC
T ss_pred             EecCCCeecC
Confidence            6666655554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.42  E-value=6e-13  Score=96.97  Aligned_cols=90  Identities=22%  Similarity=0.236  Sum_probs=57.5

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~   80 (163)
                      ..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.++. ...+.+++.
T Consensus       104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  183 (251)
T 3m19_A          104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT  183 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence            3456666666666666644444456666777777777777644444566677777777777777766653 345667777


Q ss_pred             ccccCCCCCCC
Q 031242           81 TSYEGNKGLYG   91 (163)
Q Consensus        81 l~~~~n~~lc~   91 (163)
                      +++.+|++.|.
T Consensus       184 L~l~~N~~~c~  194 (251)
T 3m19_A          184 ITLFGNQFDCS  194 (251)
T ss_dssp             EECCSCCBCTT
T ss_pred             EEeeCCceeCC
Confidence            77777776664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.41  E-value=9.8e-13  Score=96.99  Aligned_cols=91  Identities=25%  Similarity=0.225  Sum_probs=55.4

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      +.+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.++.. ..+.+|+.
T Consensus       130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  209 (272)
T 3rfs_A          130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  209 (272)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence            34556666666666666444444566666666666666666444444566666666666666666655543 45666666


Q ss_pred             ccccCCCCCCCC
Q 031242           81 TSYEGNKGLYGP   92 (163)
Q Consensus        81 l~~~~n~~lc~~   92 (163)
                      +++.+|++.|..
T Consensus       210 L~l~~N~~~~~~  221 (272)
T 3rfs_A          210 IWLHDNPWDCTC  221 (272)
T ss_dssp             EECCSSCBCCCT
T ss_pred             EEccCCCccccC
Confidence            777777666653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.39  E-value=1.1e-12  Score=97.69  Aligned_cols=89  Identities=24%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      ++++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++..++.......++.+.
T Consensus       122 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~  201 (290)
T 1p9a_G          122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF  201 (290)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEE
T ss_pred             CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEE
Confidence            34445555555555553333334455555555555555552222233445555555555555554444444455566777


Q ss_pred             ccCCCCCCC
Q 031242           83 YEGNKGLYG   91 (163)
Q Consensus        83 ~~~n~~lc~   91 (163)
                      +.+|++.|.
T Consensus       202 L~~Np~~C~  210 (290)
T 1p9a_G          202 LHGNPWLCN  210 (290)
T ss_dssp             CCSCCBCCS
T ss_pred             eCCCCccCc
Confidence            778888774

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.37  E-value=2.2e-12  Score=94.97  Aligned_cols=89  Identities=20%  Similarity=0.182  Sum_probs=49.3

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l   81 (163)
                      .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++.++.. ..+.+++.+
T Consensus       131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence            4455555555555555333333555556666666666655433344555666666666666666554432 345566666


Q ss_pred             cccCCCCCCC
Q 031242           82 SYEGNKGLYG   91 (163)
Q Consensus        82 ~~~~n~~lc~   91 (163)
                      ++.+|++.|.
T Consensus       211 ~l~~N~~~c~  220 (270)
T 2o6q_A          211 QLQENPWDCT  220 (270)
T ss_dssp             ECCSSCBCCS
T ss_pred             EecCCCeeCC
Confidence            6666666664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.37  E-value=1.4e-12  Score=93.58  Aligned_cols=81  Identities=22%  Similarity=0.290  Sum_probs=38.6

Q ss_pred             CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccccc
Q 031242            6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYE   84 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~   84 (163)
                      +++.|++++|.+++..+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|+++..++.. ..+.+|+.++++
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            3445555555555333334445555555555555555444444555555555555555555443332 334444444444


Q ss_pred             CC
Q 031242           85 GN   86 (163)
Q Consensus        85 ~n   86 (163)
                      +|
T Consensus       113 ~N  114 (220)
T 2v9t_B          113 AN  114 (220)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.37  E-value=1e-12  Score=94.24  Aligned_cols=87  Identities=22%  Similarity=0.189  Sum_probs=61.6

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      ..+++|+.|++++|.+++..+..|.++++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|.. ..+.+|+.
T Consensus        54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  133 (220)
T 2v70_A           54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL  133 (220)
T ss_dssp             GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred             ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence            35667777777777777555556777777777777777777655666777777777777777777765543 56677777


Q ss_pred             ccccCCCC
Q 031242           81 TSYEGNKG   88 (163)
Q Consensus        81 l~~~~n~~   88 (163)
                      +++++|..
T Consensus       134 L~L~~N~l  141 (220)
T 2v70_A          134 LSLYDNQI  141 (220)
T ss_dssp             EECTTSCC
T ss_pred             EECCCCcC
Confidence            77777643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.36  E-value=1.2e-12  Score=102.58  Aligned_cols=92  Identities=27%  Similarity=0.230  Sum_probs=65.7

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      .++++|+.|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|+.|++++|++++.++.. ..+++|+.
T Consensus       320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  399 (455)
T 3v47_A          320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK  399 (455)
T ss_dssp             TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence            45667777777777776555666777777777777777777666777777777777777777777666544 56677777


Q ss_pred             ccccCCCCCCCCC
Q 031242           81 TSYEGNKGLYGPP   93 (163)
Q Consensus        81 l~~~~n~~lc~~~   93 (163)
                      +++++|+..|..|
T Consensus       400 L~l~~N~l~~~~~  412 (455)
T 3v47_A          400 IWLHTNPWDCSCP  412 (455)
T ss_dssp             EECCSSCBCCCTT
T ss_pred             EEccCCCcccCCC
Confidence            7788887777643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.34  E-value=3.5e-12  Score=91.88  Aligned_cols=83  Identities=25%  Similarity=0.246  Sum_probs=52.0

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSY   83 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~   83 (163)
                      ++|+.|++++|.+++..|..+..+++|+.|++++|.++...+..+..+++|+.|++++|++++.++.. ..+.+|+.+++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            45666777777766555666666666777777777666333344566666667777766666655543 45666666666


Q ss_pred             cCCC
Q 031242           84 EGNK   87 (163)
Q Consensus        84 ~~n~   87 (163)
                      ++|.
T Consensus       120 s~N~  123 (229)
T 3e6j_A          120 CCNK  123 (229)
T ss_dssp             CSSC
T ss_pred             cCCc
Confidence            6654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.34  E-value=1.2e-12  Score=102.55  Aligned_cols=90  Identities=22%  Similarity=0.194  Sum_probs=77.6

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      ..+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|+.|++++|++++.++.. ..+.+|+.
T Consensus       204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER  283 (440)
T ss_dssp             TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred             CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence            45678888888888888777888888999999999999998777888889999999999999999877765 56889999


Q ss_pred             ccccCCCCCCC
Q 031242           81 TSYEGNKGLYG   91 (163)
Q Consensus        81 l~~~~n~~lc~   91 (163)
                      +++++|++.|.
T Consensus       284 L~L~~Np~~Cd  294 (440)
T 3zyj_A          284 IHLHHNPWNCN  294 (440)
T ss_dssp             EECCSSCEECS
T ss_pred             EEcCCCCccCC
Confidence            99999999886

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.33  E-value=1.6e-12  Score=105.20  Aligned_cols=93  Identities=22%  Similarity=0.156  Sum_probs=80.6

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccC-CCC
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQ-SFS   79 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~-~l~   79 (163)
                      ++.+++|+.|++++|.+++..|..+.++++|+.|++++|++++..|..+..+++|+.|++++|+++..++....+. +++
T Consensus       469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~  548 (606)
T 3vq2_A          469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA  548 (606)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCC
T ss_pred             hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCc
Confidence            3568899999999999998888889999999999999999998889999999999999999999997666656665 589


Q ss_pred             cccccCCCCCCCCC
Q 031242           80 PTSYEGNKGLYGPP   93 (163)
Q Consensus        80 ~l~~~~n~~lc~~~   93 (163)
                      .+++++|++.|..+
T Consensus       549 ~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          549 FFNLTNNSVACICE  562 (606)
T ss_dssp             EEECCSCCCCCSST
T ss_pred             EEEccCCCcccCCc
Confidence            99999999998643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.33  E-value=1.7e-12  Score=102.03  Aligned_cols=91  Identities=24%  Similarity=0.160  Sum_probs=77.9

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      ..+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|+.|++++|++++.++.. ..+.+++.
T Consensus       215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  294 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE  294 (452)
T ss_dssp             TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred             cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence            45677888888888888777888889999999999999999777888899999999999999999877765 56888999


Q ss_pred             ccccCCCCCCCC
Q 031242           81 TSYEGNKGLYGP   92 (163)
Q Consensus        81 l~~~~n~~lc~~   92 (163)
                      +++++|++.|..
T Consensus       295 L~L~~Np~~CdC  306 (452)
T 3zyi_A          295 LHLHHNPWNCDC  306 (452)
T ss_dssp             EECCSSCEECST
T ss_pred             EEccCCCcCCCC
Confidence            999999998863

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.31  E-value=2.2e-12  Score=86.76  Aligned_cols=80  Identities=20%  Similarity=0.278  Sum_probs=40.8

Q ss_pred             CCCCeEEccCCCCC-CCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccc
Q 031242            5 KSLYALNMSHNALT-GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTS   82 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~   82 (163)
                      ++++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+|.. ..+.+++.++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555555554 45555555555555555555555532  44455555555555555555433332 2345555555


Q ss_pred             ccCC
Q 031242           83 YEGN   86 (163)
Q Consensus        83 ~~~n   86 (163)
                      +++|
T Consensus        95 ls~N   98 (149)
T 2je0_A           95 LSGN   98 (149)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            5544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.31  E-value=5e-12  Score=88.92  Aligned_cols=84  Identities=29%  Similarity=0.352  Sum_probs=75.5

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCcccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSY   83 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~~   83 (163)
                      ++++.|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++.+|. ...+.+|+.+++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            57899999999999 8899999999999999999999977777899999999999999999998875 467889999999


Q ss_pred             cCCCCC
Q 031242           84 EGNKGL   89 (163)
Q Consensus        84 ~~n~~l   89 (163)
                      ++|...
T Consensus       110 ~~N~l~  115 (193)
T 2wfh_A          110 HGNDIS  115 (193)
T ss_dssp             CSSCCC
T ss_pred             CCCCCC
Confidence            998643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.31  E-value=7.4e-12  Score=91.18  Aligned_cols=86  Identities=22%  Similarity=0.227  Sum_probs=57.3

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      .++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++.++.. ..+.+|+.
T Consensus        56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  135 (251)
T 3m19_A           56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE  135 (251)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence            45667777777777777655566677777777777777777444455666777777777777777665543 45666666


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      +++++|.
T Consensus       136 L~Ls~N~  142 (251)
T 3m19_A          136 LRLNTNQ  142 (251)
T ss_dssp             EECCSSC
T ss_pred             EECcCCc
Confidence            7766664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.30  E-value=1.1e-11  Score=87.77  Aligned_cols=81  Identities=23%  Similarity=0.237  Sum_probs=39.1

Q ss_pred             CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccccc
Q 031242            6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYE   84 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~   84 (163)
                      +++.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++.++.. ..+.+|+.++++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            4555555555555333333445555555555555555322333445555555555555555444332 344455555554


Q ss_pred             CC
Q 031242           85 GN   86 (163)
Q Consensus        85 ~n   86 (163)
                      +|
T Consensus       109 ~N  110 (208)
T 2o6s_A          109 TN  110 (208)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.29  E-value=1e-12  Score=98.86  Aligned_cols=85  Identities=33%  Similarity=0.597  Sum_probs=55.2

Q ss_pred             CCCCCCeEEccC-CCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            3 QFKSLYALNMSH-NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         3 ~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      ++++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+.+|+.
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence            456666667663 6666666666666666777777766666666666666666677777766666555543 45666666


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      +++++|.
T Consensus       154 L~L~~N~  160 (313)
T 1ogq_A          154 ITFDGNR  160 (313)
T ss_dssp             EECCSSC
T ss_pred             EECcCCc
Confidence            6666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.29  E-value=1.8e-12  Score=95.88  Aligned_cols=88  Identities=20%  Similarity=0.214  Sum_probs=39.3

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTS   82 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~   82 (163)
                      +++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.++. ...+.+++.++
T Consensus       152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  231 (285)
T 1ozn_A          152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence            34444444444444422222344444444444444444433344444444444555555444443332 23344555555


Q ss_pred             ccCCCCCCC
Q 031242           83 YEGNKGLYG   91 (163)
Q Consensus        83 ~~~n~~lc~   91 (163)
                      +++|++.|.
T Consensus       232 l~~N~~~c~  240 (285)
T 1ozn_A          232 LNDNPWVCD  240 (285)
T ss_dssp             CCSSCEECS
T ss_pred             ccCCCccCC
Confidence            555555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.28  E-value=3.5e-12  Score=87.38  Aligned_cols=81  Identities=25%  Similarity=0.261  Sum_probs=38.9

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcC--CCCcccCCCCcc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI--PTSTQLQSFSPT   81 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~--p~~~~l~~l~~l   81 (163)
                      +++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+  +....+.+|+.+
T Consensus        48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  125 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL  125 (168)
T ss_dssp             GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred             CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence            34445555555554422  34444555555555555555434444444555555555555555432  223344445555


Q ss_pred             cccCC
Q 031242           82 SYEGN   86 (163)
Q Consensus        82 ~~~~n   86 (163)
                      ++++|
T Consensus       126 ~l~~N  130 (168)
T 2ell_A          126 DLFNC  130 (168)
T ss_dssp             ECCSS
T ss_pred             EeeCC
Confidence            55544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.28  E-value=6.8e-12  Score=93.62  Aligned_cols=85  Identities=32%  Similarity=0.384  Sum_probs=47.8

Q ss_pred             CCCCCCeEEccCCCCCC-CCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242            3 QFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP   80 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~   80 (163)
                      .+++|++|++++|.+++ ..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.++. ...+.+|+.
T Consensus       148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  227 (306)
T 2z66_A          148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  227 (306)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred             cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence            45556666666666553 3555555666666666666666544455555566666666666665554442 234555555


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      +++++|.
T Consensus       228 L~L~~N~  234 (306)
T 2z66_A          228 LDYSLNH  234 (306)
T ss_dssp             EECTTSC
T ss_pred             eECCCCC
Confidence            5555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.28  E-value=7.8e-12  Score=94.65  Aligned_cols=85  Identities=20%  Similarity=0.286  Sum_probs=61.5

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTS   82 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~   82 (163)
                      +++|++|++++|.++ .+|..++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.+|.. ..+.+|+.++
T Consensus       182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            677777777777777 77777777777777777777777 46666777777777777777777666653 5667777777


Q ss_pred             ccCCCCCC
Q 031242           83 YEGNKGLY   90 (163)
Q Consensus        83 ~~~n~~lc   90 (163)
                      +.+|....
T Consensus       260 L~~n~~~~  267 (328)
T 4fcg_A          260 LKDCSNLL  267 (328)
T ss_dssp             CTTCTTCC
T ss_pred             CCCCCchh
Confidence            77765443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.27  E-value=6.1e-12  Score=101.69  Aligned_cols=86  Identities=17%  Similarity=0.164  Sum_probs=50.5

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~   80 (163)
                      .++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++++.++. ...+.+|+.
T Consensus        73 ~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~  152 (635)
T 4g8a_A           73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  152 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred             hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence            4556666666666666644444566666666666666666643344556666666666666666655543 245556666


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      +++++|.
T Consensus       153 L~Ls~N~  159 (635)
T 4g8a_A          153 LNVAHNL  159 (635)
T ss_dssp             EECCSSC
T ss_pred             eccccCc
Confidence            6665553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.27  E-value=6.8e-12  Score=85.92  Aligned_cols=87  Identities=21%  Similarity=0.227  Sum_probs=76.0

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCc--hhhcCCCCcccccccCccccCcCC----CCcc
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP--SQLASLNFLSVLNLSYNNLVGKIP----TSTQ   74 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~~L~l~~N~l~~~~p----~~~~   74 (163)
                      ++.+++|+.|++++|.+++.+|..+..+++|++|++++|.+++ +|  ..+..+++|+.|++++|.+++.++    ....
T Consensus        67 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  145 (168)
T 2ell_A           67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL  145 (168)
T ss_dssp             CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT
T ss_pred             hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh
Confidence            4678999999999999997788888889999999999999994 44  789999999999999999998877    4467


Q ss_pred             cCCCCcccccCCCC
Q 031242           75 LQSFSPTSYEGNKG   88 (163)
Q Consensus        75 l~~l~~l~~~~n~~   88 (163)
                      ++.++.+++.+|..
T Consensus       146 l~~L~~L~l~~n~~  159 (168)
T 2ell_A          146 LPQLTYLDGYDRED  159 (168)
T ss_dssp             CSSCCEETTEETTS
T ss_pred             CccCcEecCCCCCh
Confidence            88999998888754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.26  E-value=9.1e-12  Score=87.40  Aligned_cols=85  Identities=20%  Similarity=0.226  Sum_probs=74.6

Q ss_pred             CCCCeEEccCCCCCCCCCc-ccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCccc
Q 031242            5 KSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTS   82 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~   82 (163)
                      .+++.|++++|.+++..+. .++.+++|++|++++|.+++..|..+..+++|+.|++++|++++.++. ...+.+|+.++
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            3789999999999955544 488999999999999999988899999999999999999999998886 46789999999


Q ss_pred             ccCCCCC
Q 031242           83 YEGNKGL   89 (163)
Q Consensus        83 ~~~n~~l   89 (163)
                      +++|...
T Consensus       109 L~~N~l~  115 (192)
T 1w8a_A          109 LYDNQIS  115 (192)
T ss_dssp             CCSSCCC
T ss_pred             CCCCcCC
Confidence            9998643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.25  E-value=6.5e-12  Score=100.78  Aligned_cols=90  Identities=28%  Similarity=0.304  Sum_probs=57.3

Q ss_pred             CCCCCCeEEccCCCCC-CCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            3 QFKSLYALNMSHNALT-GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      ++++|++|++++|.++ +.+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|.. ..+.+++.
T Consensus       443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  522 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK  522 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence            4556666666666655 356666666666666666666666555666666666777777777666665543 45666666


Q ss_pred             ccccCCCCCCCC
Q 031242           81 TSYEGNKGLYGP   92 (163)
Q Consensus        81 l~~~~n~~lc~~   92 (163)
                      +++++|+..|..
T Consensus       523 L~l~~N~~~~~~  534 (570)
T 2z63_A          523 IWLHTNPWDCSC  534 (570)
T ss_dssp             EECCSSCBCCCT
T ss_pred             EEecCCcccCCC
Confidence            667777666643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.25  E-value=6.3e-12  Score=101.79  Aligned_cols=82  Identities=27%  Similarity=0.331  Sum_probs=53.3

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcC-C-CCcccCCCCc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI-P-TSTQLQSFSP   80 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~-p-~~~~l~~l~~   80 (163)
                      .+++|+.|++++|.++ .+|..++++++|+.|++++|.+++ +| .++.+++|+.|++++|++++.+ | ....+.+|+.
T Consensus       461 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~  537 (567)
T 1dce_A          461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL  537 (567)
T ss_dssp             GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence            4556666677666666 666666666667777777776663 55 5666666777777777666663 3 3355666666


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      +++++|+
T Consensus       538 L~L~~N~  544 (567)
T 1dce_A          538 LNLQGNS  544 (567)
T ss_dssp             EECTTSG
T ss_pred             EEecCCc
Confidence            6666665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.24  E-value=3.6e-11  Score=88.55  Aligned_cols=87  Identities=22%  Similarity=0.213  Sum_probs=62.6

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      +.+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.++.. ..+.+|+.
T Consensus        82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  161 (272)
T 3rfs_A           82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE  161 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence            45677788888888877555556777788888888888877555555677777888888888777666654 56677777


Q ss_pred             ccccCCCC
Q 031242           81 TSYEGNKG   88 (163)
Q Consensus        81 l~~~~n~~   88 (163)
                      +++++|..
T Consensus       162 L~l~~n~l  169 (272)
T 3rfs_A          162 LDLSYNQL  169 (272)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCCc
Confidence            77777643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.23  E-value=7.2e-12  Score=88.11  Aligned_cols=83  Identities=18%  Similarity=0.277  Sum_probs=42.7

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCcc-ccCcCCCCcccCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN-LVGKIPTSTQLQSFSPT   81 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~l~~l~~l   81 (163)
                      .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|+ +.. +|....+++|+.+
T Consensus        86 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L~~L  164 (197)
T 4ezg_A           86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSL  164 (197)
T ss_dssp             TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSCCEE
T ss_pred             cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCCCEE
Confidence            34555555555555554445555555555555555555554445555555555555555554 332 2333444555555


Q ss_pred             cccCC
Q 031242           82 SYEGN   86 (163)
Q Consensus        82 ~~~~n   86 (163)
                      ++++|
T Consensus       165 ~l~~n  169 (197)
T 4ezg_A          165 NIQFD  169 (197)
T ss_dssp             ECTTB
T ss_pred             ECCCC
Confidence            55444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.23  E-value=3e-11  Score=89.98  Aligned_cols=83  Identities=30%  Similarity=0.296  Sum_probs=45.2

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l   81 (163)
                      .+++|+.|++++|.++ .+|..+..+++|++|++++|++++..|..|..+++|+.|++++|++++.++.. ..+.+|+.+
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            3455566666666655 55555555555555666655555333344555555555555555555544433 344555555


Q ss_pred             cccCC
Q 031242           82 SYEGN   86 (163)
Q Consensus        82 ~~~~n   86 (163)
                      ++++|
T Consensus       154 ~L~~N  158 (290)
T 1p9a_G          154 SLANN  158 (290)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            55554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.23  E-value=3.6e-11  Score=82.99  Aligned_cols=85  Identities=22%  Similarity=0.226  Sum_probs=73.3

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTS   82 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~   82 (163)
                      .++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.++.. ..+.+++.++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            468999999999999666667899999999999999999555566789999999999999999888764 6788999999


Q ss_pred             ccCCCC
Q 031242           83 YEGNKG   88 (163)
Q Consensus        83 ~~~n~~   88 (163)
                      +++|..
T Consensus       107 l~~N~l  112 (177)
T 2o6r_A          107 LDTNQL  112 (177)
T ss_dssp             CCSSCC
T ss_pred             CcCCcc
Confidence            998854

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.23  E-value=8.2e-12  Score=103.77  Aligned_cols=85  Identities=27%  Similarity=0.296  Sum_probs=56.1

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      ++++|++|+|++|.++ .+|..++++++|+.|+|++|.|+ .+|..++.+++|+.|++++|.++.++.....+.+|+.++
T Consensus       245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEE
T ss_pred             CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEe
Confidence            3556666666666666 66666666777777777777766 666666667777777777776665444455666666677


Q ss_pred             ccCCCCC
Q 031242           83 YEGNKGL   89 (163)
Q Consensus        83 ~~~n~~l   89 (163)
                      +++|...
T Consensus       323 L~~N~l~  329 (727)
T 4b8c_D          323 VEGNPLE  329 (727)
T ss_dssp             CTTSCCC
T ss_pred             CCCCccC
Confidence            7666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.22  E-value=1.3e-11  Score=94.58  Aligned_cols=86  Identities=24%  Similarity=0.221  Sum_probs=64.2

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l   81 (163)
                      ++++|+.|+|++|++++..|..|.++++|++|++++|.+++..+..|..+++|+.|++++|++.+..|.. ..+.+|+.+
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            6778888888888888555567888888888888888887555556777888888888888887765543 567777777


Q ss_pred             cccCCCC
Q 031242           82 SYEGNKG   88 (163)
Q Consensus        82 ~~~~n~~   88 (163)
                      ++++|..
T Consensus       142 ~L~~N~l  148 (361)
T 2xot_A          142 YLSQNQI  148 (361)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCcC
Confidence            7777743

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.20  E-value=9.4e-12  Score=98.20  Aligned_cols=90  Identities=22%  Similarity=0.229  Sum_probs=79.6

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.++.. ..+.+|+.
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  324 (477)
T 2id5_A          245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET  324 (477)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred             cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence            46788999999999999766778899999999999999999888889999999999999999999877754 56789999


Q ss_pred             ccccCCCCCCC
Q 031242           81 TSYEGNKGLYG   91 (163)
Q Consensus        81 l~~~~n~~lc~   91 (163)
                      +++++|++.|.
T Consensus       325 L~l~~N~l~c~  335 (477)
T 2id5_A          325 LILDSNPLACD  335 (477)
T ss_dssp             EECCSSCEECS
T ss_pred             EEccCCCccCc
Confidence            99999998885

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.20  E-value=2e-11  Score=92.44  Aligned_cols=91  Identities=19%  Similarity=0.259  Sum_probs=80.2

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      +++++|+.|++++|.++ .+|+.+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.. ..+.+|+.
T Consensus       203 ~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~  281 (328)
T 4fcg_A          203 ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK  281 (328)
T ss_dssp             GGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred             cCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence            46789999999999999 67888999999999999999999999999999999999999999988888754 67889999


Q ss_pred             ccccCCCCCCCCC
Q 031242           81 TSYEGNKGLYGPP   93 (163)
Q Consensus        81 l~~~~n~~lc~~~   93 (163)
                      +++++|+.....|
T Consensus       282 L~L~~n~~~~~iP  294 (328)
T 4fcg_A          282 LDLRGCVNLSRLP  294 (328)
T ss_dssp             EECTTCTTCCCCC
T ss_pred             EeCCCCCchhhcc
Confidence            9999987665443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.20  E-value=6.1e-12  Score=101.85  Aligned_cols=89  Identities=24%  Similarity=0.223  Sum_probs=74.1

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      ..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++| .+++++|++++.+|.. ..+.+++.
T Consensus       473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~  551 (606)
T 3t6q_A          473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT  551 (606)
T ss_dssp             GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred             ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence            356778888888888887777888888888888888888888888888888888 8888888888877764 56788888


Q ss_pred             ccccCCCCCCC
Q 031242           81 TSYEGNKGLYG   91 (163)
Q Consensus        81 l~~~~n~~lc~   91 (163)
                      +++.+|++.|.
T Consensus       552 L~l~~N~~~c~  562 (606)
T 3t6q_A          552 INLRQNPLDCT  562 (606)
T ss_dssp             EECTTCCEECS
T ss_pred             EeCCCCCcccc
Confidence            99999998885

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.19  E-value=6.4e-12  Score=84.41  Aligned_cols=86  Identities=22%  Similarity=0.239  Sum_probs=75.2

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcC--CCCcccCCC
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI--PTSTQLQSF   78 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~--p~~~~l~~l   78 (163)
                      +..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+  .....++++
T Consensus        38 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           38 TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL  115 (149)
T ss_dssp             CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred             HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence            35788999999999999954  77899999999999999999778988888999999999999999854  455778899


Q ss_pred             CcccccCCCC
Q 031242           79 SPTSYEGNKG   88 (163)
Q Consensus        79 ~~l~~~~n~~   88 (163)
                      +.+++++|+.
T Consensus       116 ~~L~l~~N~l  125 (149)
T 2je0_A          116 KSLDLFNCEV  125 (149)
T ss_dssp             CEEECTTCGG
T ss_pred             CEEeCcCCcc
Confidence            9999998853

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.19  E-value=2.5e-11  Score=92.96  Aligned_cols=84  Identities=25%  Similarity=0.152  Sum_probs=68.5

Q ss_pred             CCCCeEEccCCCCCCCCCcccC-CCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFG-NLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTS   82 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~   82 (163)
                      ..++.|+|++|++++..+..+. ++++|+.|++++|.+++..|..|..+++|+.|++++|++++.++.. ..+.+|+.++
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            3578899999999865666676 8899999999999998666677888999999999999998877653 6778888888


Q ss_pred             ccCCCC
Q 031242           83 YEGNKG   88 (163)
Q Consensus        83 ~~~n~~   88 (163)
                      +++|..
T Consensus       119 L~~N~i  124 (361)
T 2xot_A          119 LYNNHI  124 (361)
T ss_dssp             CCSSCC
T ss_pred             CCCCcc
Confidence            888854

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.19  E-value=2.2e-11  Score=99.87  Aligned_cols=91  Identities=22%  Similarity=0.217  Sum_probs=73.8

Q ss_pred             CCCCCCCeEEccCCCCCCCCCc-ccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-c-ccCCC
Q 031242            2 GQFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-T-QLQSF   78 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~-~l~~l   78 (163)
                      .++++|++|++++|+++ .+|. .|.++++|+.|++++|++++..+..+..+++|+.|++++|++++.++.. . .+.++
T Consensus       533 ~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L  611 (680)
T 1ziw_A          533 KGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL  611 (680)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred             cCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc
Confidence            45778888888888888 5554 5888999999999999998544555788899999999999998877654 2 57889


Q ss_pred             CcccccCCCCCCCCC
Q 031242           79 SPTSYEGNKGLYGPP   93 (163)
Q Consensus        79 ~~l~~~~n~~lc~~~   93 (163)
                      +.+++++|++.|..+
T Consensus       612 ~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          612 TELDMRFNPFDCTCE  626 (680)
T ss_dssp             SEEECTTCCCCBCCC
T ss_pred             CEEEccCCCcccCCc
Confidence            999999999999754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.19  E-value=7.2e-11  Score=86.79  Aligned_cols=87  Identities=26%  Similarity=0.294  Sum_probs=66.1

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      .++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.++.. ..+.+|+.
T Consensus        82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  161 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE  161 (270)
T ss_dssp             SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence            45778888888888888555566778888888888888888666666778888888888888888766653 56777777


Q ss_pred             ccccCCCC
Q 031242           81 TSYEGNKG   88 (163)
Q Consensus        81 l~~~~n~~   88 (163)
                      +++++|..
T Consensus       162 L~L~~n~l  169 (270)
T 2o6q_A          162 LRLYNNQL  169 (270)
T ss_dssp             EECCSSCC
T ss_pred             eEecCCcC
Confidence            77777743

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.18  E-value=2.2e-11  Score=85.65  Aligned_cols=84  Identities=24%  Similarity=0.334  Sum_probs=74.2

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceecccccc-CCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCC
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN-LSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS   79 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~   79 (163)
                      ++.+++|+.|++++|.+++..|..+..+++|+.|++++|. ++ .+| .+..+++|+.|++++|++++.. ....+++|+
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~  184 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLN  184 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCC
T ss_pred             hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCC
Confidence            4578999999999999997788889999999999999998 65 777 6899999999999999999754 667889999


Q ss_pred             cccccCCC
Q 031242           80 PTSYEGNK   87 (163)
Q Consensus        80 ~l~~~~n~   87 (163)
                      .+++.+|+
T Consensus       185 ~L~l~~N~  192 (197)
T 4ezg_A          185 QLYAFSQT  192 (197)
T ss_dssp             EEEECBC-
T ss_pred             EEEeeCcc
Confidence            99999886

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.18  E-value=6.7e-11  Score=87.42  Aligned_cols=86  Identities=26%  Similarity=0.292  Sum_probs=55.4

Q ss_pred             CCCCCCCeEEccCCC-CCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCC
Q 031242            2 GQFKSLYALNMSHNA-LTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFS   79 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~   79 (163)
                      .++++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+.++. ...+.+|+
T Consensus        77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  156 (285)
T 1ozn_A           77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT  156 (285)
T ss_dssp             TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence            456667777777775 5544456666777777777777777655566666667777777777776665554 24556666


Q ss_pred             cccccCCC
Q 031242           80 PTSYEGNK   87 (163)
Q Consensus        80 ~l~~~~n~   87 (163)
                      .+++++|.
T Consensus       157 ~L~l~~n~  164 (285)
T 1ozn_A          157 HLFLHGNR  164 (285)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            66666653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.18  E-value=3.3e-11  Score=94.29  Aligned_cols=87  Identities=25%  Similarity=0.314  Sum_probs=60.7

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      +.+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|.. ..+.+|+.
T Consensus       296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  375 (455)
T 3v47_A          296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE  375 (455)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence            45667777777777777666667777777777777777777656666777777777777777777665543 56677777


Q ss_pred             ccccCCCC
Q 031242           81 TSYEGNKG   88 (163)
Q Consensus        81 l~~~~n~~   88 (163)
                      +++++|..
T Consensus       376 L~L~~N~l  383 (455)
T 3v47_A          376 LALDTNQL  383 (455)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCcc
Confidence            77777643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.17  E-value=5.2e-11  Score=95.88  Aligned_cols=89  Identities=24%  Similarity=0.219  Sum_probs=61.0

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcc-cCCC----------------------cccceeccccccCCCcCchhhcCCCCcccc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSS-FGNL----------------------KQIESLDLSMNNLSGKIPSQLASLNFLSVL   58 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~-~~~l----------------------~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L   58 (163)
                      .++++|+.|++++|.+++.+|.. +..+                      ++|+.|++++|+++ .+|..+..+++|+.|
T Consensus       400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L  478 (562)
T 3a79_B          400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQEL  478 (562)
T ss_dssp             TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEE
T ss_pred             cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEE
Confidence            34566666666666666434432 3333                      46677777777777 677766678888888


Q ss_pred             cccCccccCcCCC-CcccCCCCcccccCCCCCCC
Q 031242           59 NLSYNNLVGKIPT-STQLQSFSPTSYEGNKGLYG   91 (163)
Q Consensus        59 ~l~~N~l~~~~p~-~~~l~~l~~l~~~~n~~lc~   91 (163)
                      ++++|+++..++. ...+..++.+++++|++.|.
T Consensus       479 ~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          479 NVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             ECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             ECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            8888888866655 46677888888888888775

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.17  E-value=4.7e-11  Score=96.68  Aligned_cols=86  Identities=19%  Similarity=0.174  Sum_probs=50.9

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~   80 (163)
                      .++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. ...+.+|+.
T Consensus        53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  132 (606)
T 3vq2_A           53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK  132 (606)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred             cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence            3556666666666666654555566666666666666666655566666666666666666666555432 245555555


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      +++++|.
T Consensus       133 L~L~~n~  139 (606)
T 3vq2_A          133 LNVAHNF  139 (606)
T ss_dssp             EECCSSC
T ss_pred             EeCCCCc
Confidence            5555553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.16  E-value=6.7e-11  Score=81.47  Aligned_cols=72  Identities=22%  Similarity=0.230  Sum_probs=62.3

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS   72 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~   72 (163)
                      +.++++|+.|++++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|.+....+..
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l  121 (170)
T 3g39_A           50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI  121 (170)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred             hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence            457899999999999999666666899999999999999999655667999999999999999998766543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.16  E-value=5.8e-11  Score=87.38  Aligned_cols=84  Identities=18%  Similarity=0.197  Sum_probs=37.0

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPT   81 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l   81 (163)
                      ++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+. ...+.+|+.+
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  129 (276)
T 2z62_A           50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  129 (276)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred             cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence            344455555555554433333444445555555555544433334444444444444444444433331 2333344444


Q ss_pred             cccCC
Q 031242           82 SYEGN   86 (163)
Q Consensus        82 ~~~~n   86 (163)
                      ++++|
T Consensus       130 ~l~~n  134 (276)
T 2z62_A          130 NVAHN  134 (276)
T ss_dssp             ECCSS
T ss_pred             ECcCC
Confidence            44333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.14  E-value=3.5e-11  Score=90.25  Aligned_cols=84  Identities=18%  Similarity=0.218  Sum_probs=64.2

Q ss_pred             CCCCCCeEEccCCCCCCCCCccc--CCCcccceeccccccCCCcCchhhcCC-----CCcccccccCccccCcCCC-Ccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSF--GNLKQIESLDLSMNNLSGKIPSQLASL-----NFLSVLNLSYNNLVGKIPT-STQ   74 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~ls~N~l~g~~p~~~~~l-----~~L~~L~l~~N~l~~~~p~-~~~   74 (163)
                      ++++|++|++++|.+++.+|..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|++.+.+|. ...
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            46788888888888887788776  7788888888888888855 7666665     7888888888888777654 356


Q ss_pred             cCCCCcccccCCC
Q 031242           75 LQSFSPTSYEGNK   87 (163)
Q Consensus        75 l~~l~~l~~~~n~   87 (163)
                      +.+++.+++++|.
T Consensus       172 l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          172 FPALSTLDLSDNP  184 (312)
T ss_dssp             CSSCCEEECCSCT
T ss_pred             CCCCCEEECCCCC
Confidence            7777777777775

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.14  E-value=9e-11  Score=93.45  Aligned_cols=88  Identities=27%  Similarity=0.276  Sum_probs=52.7

Q ss_pred             CCCCCCeEEccCCCCCCCCCcc-cCCC----------------------cccceeccccccCCCcCchhhcCCCCccccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSS-FGNL----------------------KQIESLDLSMNNLSGKIPSQLASLNFLSVLN   59 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~-~~~l----------------------~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~   59 (163)
                      .+++|+.|++++|.+++.+|.. +..+                      ++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus       372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~  450 (520)
T 2z7x_B          372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELN  450 (520)
T ss_dssp             TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEE
T ss_pred             hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEE
Confidence            4556666666666666434432 3333                      45556666666665 5666555666777777


Q ss_pred             ccCccccCcCCC-CcccCCCCcccccCCCCCCC
Q 031242           60 LSYNNLVGKIPT-STQLQSFSPTSYEGNKGLYG   91 (163)
Q Consensus        60 l~~N~l~~~~p~-~~~l~~l~~l~~~~n~~lc~   91 (163)
                      +++|+++..++. ...+.+++.+++++|+..|.
T Consensus       451 L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence            777777654444 34566666677777766664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.14  E-value=1.8e-11  Score=84.60  Aligned_cols=83  Identities=20%  Similarity=0.175  Sum_probs=68.5

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC--CCcccCCCCccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSPTS   82 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~~l~   82 (163)
                      ++|+.|++++|.+++ + +.+..+++|++|++++|.+++..|..+..+++|+.|++++|++...++  ....+.+++.++
T Consensus        42 ~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             TCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence            389999999999995 4 678899999999999999995433445889999999999999976554  456788899999


Q ss_pred             ccCCCCC
Q 031242           83 YEGNKGL   89 (163)
Q Consensus        83 ~~~n~~l   89 (163)
                      +++|+..
T Consensus       120 l~~N~i~  126 (176)
T 1a9n_A          120 ILRNPVT  126 (176)
T ss_dssp             CCSSGGG
T ss_pred             ecCCCCC
Confidence            9998753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.13  E-value=7.1e-11  Score=89.88  Aligned_cols=86  Identities=27%  Similarity=0.223  Sum_probs=59.1

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC--CCcccCCCC
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFS   79 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~   79 (163)
                      .++++|+.|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|++.+.++  ....+.+++
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            456777777777777775556667777777777777777774333346777777777777777776554  235666777


Q ss_pred             cccccCCC
Q 031242           80 PTSYEGNK   87 (163)
Q Consensus        80 ~l~~~~n~   87 (163)
                      .+++++|.
T Consensus       153 ~L~l~~n~  160 (353)
T 2z80_A          153 ILRVGNMD  160 (353)
T ss_dssp             EEEEEESS
T ss_pred             EEECCCCc
Confidence            77776663

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.13  E-value=3.6e-11  Score=83.05  Aligned_cols=82  Identities=16%  Similarity=0.142  Sum_probs=69.2

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCc-ccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLK-QIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      ++.+|+.|++++|.++ .+|. +..+. +|++|++++|.+++.  ..+..+++|+.|++++|++++.++.. ..+.+++.
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            5678999999999999 5665 44444 999999999999954  57889999999999999999887666 67889999


Q ss_pred             ccccCCCC
Q 031242           81 TSYEGNKG   88 (163)
Q Consensus        81 l~~~~n~~   88 (163)
                      +++++|..
T Consensus        93 L~L~~N~i  100 (176)
T 1a9n_A           93 LILTNNSL  100 (176)
T ss_dssp             EECCSCCC
T ss_pred             EECCCCcC
Confidence            99998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.13  E-value=7.2e-11  Score=98.12  Aligned_cols=85  Identities=21%  Similarity=0.188  Sum_probs=76.9

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l   81 (163)
                      ..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.|+.++.....+.+|+.+
T Consensus       221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            46788999999999999 89988889999999999999999 99999999999999999999999665556889999999


Q ss_pred             cccCCCC
Q 031242           82 SYEGNKG   88 (163)
Q Consensus        82 ~~~~n~~   88 (163)
                      ++++|..
T Consensus       299 ~L~~N~l  305 (727)
T 4b8c_D          299 YFFDNMV  305 (727)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCCC
Confidence            9998854

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.13  E-value=7e-11  Score=94.51  Aligned_cols=86  Identities=23%  Similarity=0.189  Sum_probs=56.6

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCc--CCCCcccCCCC
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK--IPTSTQLQSFS   79 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~~l~~l~   79 (163)
                      .++++|++|++++|++++..|..+.++++|++|++++|.+++..|..++.+++|++|++++|++++.  ++....+.+|+
T Consensus        47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  126 (549)
T 2z81_A           47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ  126 (549)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence            4566777777777777755556677777777777777777755555577777777777777777643  23345566666


Q ss_pred             cccccCCC
Q 031242           80 PTSYEGNK   87 (163)
Q Consensus        80 ~l~~~~n~   87 (163)
                      .+++++|.
T Consensus       127 ~L~L~~n~  134 (549)
T 2z81_A          127 TLRIGNVE  134 (549)
T ss_dssp             EEEEEESS
T ss_pred             EEECCCCc
Confidence            66666654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.12  E-value=6.8e-11  Score=95.72  Aligned_cols=86  Identities=13%  Similarity=0.095  Sum_probs=49.2

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~   80 (163)
                      +++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+. ...+.+|+.
T Consensus        54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~  133 (606)
T 3t6q_A           54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES  133 (606)
T ss_dssp             TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred             ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence            4455666666666666655555566666666666666666655555566666666666666665554322 244555555


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      +++++|.
T Consensus       134 L~L~~n~  140 (606)
T 3t6q_A          134 LYLGSNH  140 (606)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            5555553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.12  E-value=1.7e-10  Score=93.71  Aligned_cols=86  Identities=23%  Similarity=0.204  Sum_probs=48.7

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~   80 (163)
                      +.+++|+.|++++|.+++..|..++++++|++|++++|.+++..+..|..+++|+.|++++|.+.+.+|. ...+.+|+.
T Consensus        96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  175 (597)
T 3oja_B           96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN  175 (597)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence            3455666666666666654455556666666666666666632222345666666666666666655553 245555565


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      +++++|.
T Consensus       176 L~L~~N~  182 (597)
T 3oja_B          176 LQLSSNR  182 (597)
T ss_dssp             EECTTSC
T ss_pred             EECcCCC
Confidence            6555553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.11  E-value=1.4e-10  Score=86.84  Aligned_cols=83  Identities=20%  Similarity=0.219  Sum_probs=51.3

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcc----cCCCcccceeccccccCCCcCchhhcCC---CCcccccccCccccCcCCCCcc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSS----FGNLKQIESLDLSMNNLSGKIPSQLASL---NFLSVLNLSYNNLVGKIPTSTQ   74 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~ls~N~l~g~~p~~~~~l---~~L~~L~l~~N~l~~~~p~~~~   74 (163)
                      +.+++|++|++++|+++ .+|..    ++.+++|++|++++|.+++..|..+..+   ++|+.|++++|+++..+...  
T Consensus       194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--  270 (310)
T 4glp_A          194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--  270 (310)
T ss_dssp             TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--
T ss_pred             hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--
Confidence            35666777777777776 33332    3556677777777777776556655555   47777777777777443322  


Q ss_pred             cCCCCcccccCCC
Q 031242           75 LQSFSPTSYEGNK   87 (163)
Q Consensus        75 l~~l~~l~~~~n~   87 (163)
                      ..+++.+++++|.
T Consensus       271 ~~~L~~L~Ls~N~  283 (310)
T 4glp_A          271 PAKLRVLDLSSNR  283 (310)
T ss_dssp             CSCCSCEECCSCC
T ss_pred             cCCCCEEECCCCc
Confidence            2566666666664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.11  E-value=1.7e-10  Score=79.71  Aligned_cols=79  Identities=19%  Similarity=0.195  Sum_probs=70.6

Q ss_pred             CCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcccccC
Q 031242            7 LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEG   85 (163)
Q Consensus         7 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~~   85 (163)
                      -+.+++++|.++ .+|..+.  ++|+.|++++|.+++..|..+..+++|+.|++++|++++.++.. ..+.+|+.+++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            368999999998 8888765  89999999999999877889999999999999999999988765 6789999999999


Q ss_pred             CCC
Q 031242           86 NKG   88 (163)
Q Consensus        86 n~~   88 (163)
                      |..
T Consensus        91 N~l   93 (174)
T 2r9u_A           91 NHL   93 (174)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.11  E-value=7.8e-11  Score=87.86  Aligned_cols=87  Identities=24%  Similarity=0.312  Sum_probs=72.8

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCC-cCchhhcCCCCcccccccCccccCcCCCC-cccCCCC
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFS   79 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~   79 (163)
                      ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|++++.+|.. ..+.+|+
T Consensus       123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  202 (306)
T 2z66_A          123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  202 (306)
T ss_dssp             TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence            467889999999999887778888889999999999998886 47888888999999999999998876654 5678888


Q ss_pred             cccccCCCC
Q 031242           80 PTSYEGNKG   88 (163)
Q Consensus        80 ~l~~~~n~~   88 (163)
                      .+++++|..
T Consensus       203 ~L~L~~N~l  211 (306)
T 2z66_A          203 VLNMSHNNF  211 (306)
T ss_dssp             EEECTTSCC
T ss_pred             EEECCCCcc
Confidence            888888864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.11  E-value=1.2e-10  Score=91.48  Aligned_cols=69  Identities=20%  Similarity=0.198  Sum_probs=40.2

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP   70 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p   70 (163)
                      .++++|+.|++++|.+++..|..|.++++|++|++++|.+++..+..+..+++|+.|++++|++...++
T Consensus        96 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  164 (452)
T 3zyi_A           96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS  164 (452)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred             CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH
Confidence            345566666666666665455556666666666666666663333445556666666666666654443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.11  E-value=1.1e-10  Score=85.95  Aligned_cols=85  Identities=19%  Similarity=0.241  Sum_probs=48.0

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCc-CCC-CcccCCCC
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGK-IPT-STQLQSFS   79 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~-~p~-~~~l~~l~   79 (163)
                      .++++|+.|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+. +|. ...+.+|+
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~  152 (276)
T 2z62_A           73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  152 (276)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             cCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC
Confidence            3456666666666666654445566666666666666666644443455566666666666666542 132 24455555


Q ss_pred             cccccCC
Q 031242           80 PTSYEGN   86 (163)
Q Consensus        80 ~l~~~~n   86 (163)
                      .+++++|
T Consensus       153 ~L~Ls~N  159 (276)
T 2z62_A          153 HLDLSSN  159 (276)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            5555555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.11  E-value=2.4e-10  Score=87.98  Aligned_cols=85  Identities=25%  Similarity=0.269  Sum_probs=46.7

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchh-hcCCCCcccccccCccccCcCCC-CcccCCCC
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ-LASLNFLSVLNLSYNNLVGKIPT-STQLQSFS   79 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~   79 (163)
                      ..+++|++|++++|.+++..|..++++++|++|++++|.++ .+|.. +..+++|++|++++|.+.+.++. ...+.+++
T Consensus        90 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (390)
T 3o6n_A           90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  168 (390)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred             cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence            34555666666666665444455555666666666666665 34433 35556666666666666555443 24455555


Q ss_pred             cccccCCC
Q 031242           80 PTSYEGNK   87 (163)
Q Consensus        80 ~l~~~~n~   87 (163)
                      .+++++|.
T Consensus       169 ~L~l~~n~  176 (390)
T 3o6n_A          169 NLQLSSNR  176 (390)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            55555553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.10  E-value=1.6e-10  Score=87.23  Aligned_cols=86  Identities=19%  Similarity=0.146  Sum_probs=70.6

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (163)
                      ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+++..++....+.+|+.++++
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence            57888999999998776778888899999999999998766677888899999999999888665556778888888888


Q ss_pred             CCCCCC
Q 031242           85 GNKGLY   90 (163)
Q Consensus        85 ~n~~lc   90 (163)
                      +|....
T Consensus       273 ~N~l~~  278 (332)
T 2ft3_A          273 TNNITK  278 (332)
T ss_dssp             SSCCCB
T ss_pred             CCCCCc
Confidence            886443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.10  E-value=1.3e-10  Score=87.60  Aligned_cols=84  Identities=25%  Similarity=0.233  Sum_probs=71.3

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (163)
                      ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++...+.....+..++.++++
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence            67899999999998777888899999999999999998766778888999999999999998666666778888888888


Q ss_pred             CCCC
Q 031242           85 GNKG   88 (163)
Q Consensus        85 ~n~~   88 (163)
                      +|..
T Consensus       272 ~N~i  275 (330)
T 1xku_A          272 NNNI  275 (330)
T ss_dssp             SSCC
T ss_pred             CCcC
Confidence            8864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.10  E-value=1.3e-10  Score=91.71  Aligned_cols=84  Identities=24%  Similarity=0.303  Sum_probs=38.2

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l   81 (163)
                      ++++|++|++++|.+++..|..|.++++|++|++++|.++...+..+..+++|+.|++++|++.+.++.. ..+.+|+.+
T Consensus        54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            3445555555555555444444555555555555555554222223444455555555555444443322 333444444


Q ss_pred             cccCC
Q 031242           82 SYEGN   86 (163)
Q Consensus        82 ~~~~n   86 (163)
                      ++.+|
T Consensus       134 ~l~~n  138 (477)
T 2id5_A          134 EVGDN  138 (477)
T ss_dssp             EECCT
T ss_pred             ECCCC
Confidence            44333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.09  E-value=1.9e-10  Score=94.11  Aligned_cols=83  Identities=23%  Similarity=0.289  Sum_probs=54.6

Q ss_pred             CCCCCeEEccCCCCCCCCCcccC--CCcccceeccccccCCCcCchhhcCCCCcccccc------cCccccCcCCCC-cc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFG--NLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL------SYNNLVGKIPTS-TQ   74 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l------~~N~l~~~~p~~-~~   74 (163)
                      +++|+.|++++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++      ++|++.+.+|.. ..
T Consensus       487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~  564 (636)
T 4eco_A          487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL  564 (636)
T ss_dssp             GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred             cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence            346777777777777 6666665  67777777777777774 6766667777777777      345555555543 55


Q ss_pred             cCCCCcccccCCCC
Q 031242           75 LQSFSPTSYEGNKG   88 (163)
Q Consensus        75 l~~l~~l~~~~n~~   88 (163)
                      +.+|+.+++++|..
T Consensus       565 l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          565 CPSLTQLQIGSNDI  578 (636)
T ss_dssp             CSSCCEEECCSSCC
T ss_pred             CCCCCEEECCCCcC
Confidence            66666677666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.09  E-value=1.8e-10  Score=90.16  Aligned_cols=84  Identities=19%  Similarity=0.203  Sum_probs=49.2

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      .++++|++|+|++|.+++..+..|.++++|++|++++|.++...+..+..+++|+.|++++|++...++.. ..+.+|+.
T Consensus        85 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  164 (440)
T 3zyj_A           85 KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR  164 (440)
T ss_dssp             SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence            45566666666666666444456666666666666666666333345666666666666666666554422 33444444


Q ss_pred             ccccC
Q 031242           81 TSYEG   85 (163)
Q Consensus        81 l~~~~   85 (163)
                      +++.+
T Consensus       165 L~l~~  169 (440)
T 3zyj_A          165 LDLGE  169 (440)
T ss_dssp             EECCC
T ss_pred             eCCCC
Confidence            44444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.08  E-value=1.2e-10  Score=87.37  Aligned_cols=84  Identities=21%  Similarity=0.200  Sum_probs=42.0

Q ss_pred             CCCCCCCeEEccCCCCCC--CCC-cccCCCcccceeccccccCCCcCc-hhhcCCCCcccccccCccccCcCCCCcccCC
Q 031242            2 GQFKSLYALNMSHNALTG--SIP-SSFGNLKQIESLDLSMNNLSGKIP-SQLASLNFLSVLNLSYNNLVGKIPTSTQLQS   77 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~--~~p-~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~   77 (163)
                      +++++|+.|++++|.+++  .++ ..+..+++|+.|++++|.+++..| ..+..+++|+.|++++|+++..+....  .+
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~  275 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK  275 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence            345566666666666552  111 122345566666666666654443 233445566666666666553322222  45


Q ss_pred             CCcccccCCC
Q 031242           78 FSPTSYEGNK   87 (163)
Q Consensus        78 l~~l~~~~n~   87 (163)
                      ++.+++++|.
T Consensus       276 L~~L~Ls~N~  285 (312)
T 1wwl_A          276 LSVLDLSYNR  285 (312)
T ss_dssp             EEEEECCSSC
T ss_pred             ceEEECCCCC
Confidence            5555555553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.08  E-value=1.3e-10  Score=97.95  Aligned_cols=86  Identities=21%  Similarity=0.279  Sum_probs=53.0

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchh--hcCCCCcccccccCccccCcCCC--CcccCC
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQ--LASLNFLSVLNLSYNNLVGKIPT--STQLQS   77 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~--~~~l~~L~~L~l~~N~l~~~~p~--~~~l~~   77 (163)
                      +++++|++|+|++|.+++..|..|+++++|++|++++|.+++.+|..  +..+++|+.|++++|.+.+..+.  ...+.+
T Consensus        70 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~  149 (844)
T 3j0a_A           70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS  149 (844)
T ss_dssp             SSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred             cCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence            45566666666666666555666666666666666666666555544  66666666666666666655432  345566


Q ss_pred             CCcccccCCC
Q 031242           78 FSPTSYEGNK   87 (163)
Q Consensus        78 l~~l~~~~n~   87 (163)
                      |+.+++++|.
T Consensus       150 L~~L~Ls~N~  159 (844)
T 3j0a_A          150 LKSIDFSSNQ  159 (844)
T ss_dssp             CCEEEEESSC
T ss_pred             CCEEECCCCc
Confidence            6666665553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.08  E-value=4.3e-11  Score=97.97  Aligned_cols=85  Identities=15%  Similarity=0.289  Sum_probs=63.3

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceecccccc-CCC-cCchhhcCC------CCcccccccCccccCcCC--CC
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN-LSG-KIPSQLASL------NFLSVLNLSYNNLVGKIP--TS   72 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~g-~~p~~~~~l------~~L~~L~l~~N~l~~~~p--~~   72 (163)
                      ++++|++|++++|.+.+.+|..++++++|++|++++|. ++| .+|..++.+      ++|+.|++++|+++..+.  ..
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l  326 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL  326 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence            68888999999998888888888888888888888887 887 677776665      677777777777773332  24


Q ss_pred             cccCCCCcccccCCC
Q 031242           73 TQLQSFSPTSYEGNK   87 (163)
Q Consensus        73 ~~l~~l~~l~~~~n~   87 (163)
                      ..+.+|+.+++++|.
T Consensus       327 ~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          327 QKMKKLGMLECLYNQ  341 (636)
T ss_dssp             TTCTTCCEEECCSCC
T ss_pred             ccCCCCCEEeCcCCc
Confidence            556666666666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.08  E-value=1.1e-10  Score=89.92  Aligned_cols=86  Identities=19%  Similarity=0.221  Sum_probs=75.6

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l   81 (163)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++...++.. ..+.+|+.+
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence            4788999999999999666678999999999999999999777788999999999999999999777664 678899999


Q ss_pred             cccCCCC
Q 031242           82 SYEGNKG   88 (163)
Q Consensus        82 ~~~~n~~   88 (163)
                      ++++|..
T Consensus       147 ~L~~n~l  153 (390)
T 3o6n_A          147 SMSNNNL  153 (390)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCcc
Confidence            9988854

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.06  E-value=1.7e-10  Score=93.74  Aligned_cols=87  Identities=18%  Similarity=0.208  Sum_probs=77.8

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l   81 (163)
                      ++++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..++.+++|+.|++++|.+++.++.. ..+.+|+.+
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            4789999999999999777779999999999999999999877788899999999999999999888775 688999999


Q ss_pred             cccCCCCC
Q 031242           82 SYEGNKGL   89 (163)
Q Consensus        82 ~~~~n~~l   89 (163)
                      ++++|...
T Consensus       153 ~Ls~N~l~  160 (597)
T 3oja_B          153 SMSNNNLE  160 (597)
T ss_dssp             ECCSSCCC
T ss_pred             EeeCCcCC
Confidence            99988643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.06  E-value=2.3e-10  Score=91.75  Aligned_cols=86  Identities=17%  Similarity=0.173  Sum_probs=50.3

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC-CCcccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP-TSTQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~l~~l~~   80 (163)
                      .++++|++|++++|++++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.++ ....+.+|+.
T Consensus        49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  128 (570)
T 2z63_A           49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  128 (570)
T ss_dssp             TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred             hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence            345666666666666664445556666666666666666664444556666666666666666655443 2345555555


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      +++++|.
T Consensus       129 L~L~~n~  135 (570)
T 2z63_A          129 LNVAHNL  135 (570)
T ss_dssp             EECCSSC
T ss_pred             EecCCCc
Confidence            5555553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.06  E-value=1.9e-10  Score=93.12  Aligned_cols=79  Identities=29%  Similarity=0.323  Sum_probs=68.1

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcC-chhhcCCCCcccccccCccccCcCCCCcc----c
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI-PSQLASLNFLSVLNLSYNNLVGKIPTSTQ----L   75 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~-p~~~~~l~~L~~L~l~~N~l~~~~p~~~~----l   75 (163)
                      ++++++|+.|+|++|.+++ +| .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|++++.+|....    +
T Consensus       482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l  559 (567)
T 1dce_A          482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML  559 (567)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred             hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence            3568999999999999995 77 8999999999999999999766 99999999999999999999998876532    4


Q ss_pred             CCCCcc
Q 031242           76 QSFSPT   81 (163)
Q Consensus        76 ~~l~~l   81 (163)
                      ++|+.+
T Consensus       560 p~L~~L  565 (567)
T 1dce_A          560 PSVSSI  565 (567)
T ss_dssp             TTCSEE
T ss_pred             cccCcc
Confidence            555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.06  E-value=3e-10  Score=85.74  Aligned_cols=66  Identities=30%  Similarity=0.472  Sum_probs=31.9

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcC
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI   69 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~   69 (163)
                      ++++|+.|++++|.+++..|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++.+
T Consensus       215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred             CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence            3444455555555554333334444555555555555554 44444444555555555555544433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.05  E-value=1.2e-10  Score=93.09  Aligned_cols=85  Identities=21%  Similarity=0.160  Sum_probs=77.6

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCcccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSY   83 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~~   83 (163)
                      ++|++|++++|.+++..|..+.++++|++|++++|.+++..|..+..+++|++|++++|++++.+|. ...+.+|+.+++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            5799999999999977788999999999999999999988888999999999999999999998876 578899999999


Q ss_pred             cCCCCC
Q 031242           84 EGNKGL   89 (163)
Q Consensus        84 ~~n~~l   89 (163)
                      ++|...
T Consensus       106 s~n~l~  111 (549)
T 2z81_A          106 MGNPYQ  111 (549)
T ss_dssp             TTCCCS
T ss_pred             CCCccc
Confidence            998643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.04  E-value=2.9e-10  Score=85.70  Aligned_cols=85  Identities=21%  Similarity=0.282  Sum_probs=67.6

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~   80 (163)
                      .++++|+.|++++|.++ .+|..+.  ++|+.|++++|.+++..|..+..+++|+.|++++|.+++.++. ...+.+++.
T Consensus       168 ~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  244 (330)
T 1xku_A          168 QGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  244 (330)
T ss_dssp             GGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             cCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence            35778888999998888 6776554  7888889999988877778888888899999999988887764 466778888


Q ss_pred             ccccCCCCC
Q 031242           81 TSYEGNKGL   89 (163)
Q Consensus        81 l~~~~n~~l   89 (163)
                      +++++|...
T Consensus       245 L~L~~N~l~  253 (330)
T 1xku_A          245 LHLNNNKLV  253 (330)
T ss_dssp             EECCSSCCS
T ss_pred             EECCCCcCc
Confidence            888888543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.04  E-value=9.8e-11  Score=93.13  Aligned_cols=86  Identities=22%  Similarity=0.168  Sum_probs=60.9

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      .+++|+.|++++|.+++. |. ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++.++....+.++..++
T Consensus       167 ~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~  243 (487)
T 3oja_A          167 SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD  243 (487)
T ss_dssp             GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEE
T ss_pred             hCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEE
Confidence            355666666666666633 22 2347777788888888874 45557788888888888888887666666777888888


Q ss_pred             ccCCCCCCC
Q 031242           83 YEGNKGLYG   91 (163)
Q Consensus        83 ~~~n~~lc~   91 (163)
                      +.+|+..|+
T Consensus       244 l~~N~l~c~  252 (487)
T 3oja_A          244 LRGNGFHCG  252 (487)
T ss_dssp             CTTCCBCHH
T ss_pred             cCCCCCcCc
Confidence            888888765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.04  E-value=1.3e-10  Score=87.27  Aligned_cols=85  Identities=22%  Similarity=0.194  Sum_probs=51.3

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~   83 (163)
                      +++|++|++++|.++ .+|. ...+++|+.|++++|.++ .+|..+..+++|+.|++++|++++.++....+.+++.+++
T Consensus       168 l~~L~~L~L~~N~l~-~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l  244 (317)
T 3o53_A          168 SDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL  244 (317)
T ss_dssp             TTTCCEEECTTSCCC-EEEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred             cCcCCEEECCCCcCc-cccc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEc
Confidence            455566666666655 2222 223666666666666666 4444566667777777777777655544455666667777


Q ss_pred             cCCCCCCC
Q 031242           84 EGNKGLYG   91 (163)
Q Consensus        84 ~~n~~lc~   91 (163)
                      ++|+..|+
T Consensus       245 ~~N~~~~~  252 (317)
T 3o53_A          245 RGNGFHCG  252 (317)
T ss_dssp             TTCCCBHH
T ss_pred             cCCCccCc
Confidence            77766653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.03  E-value=3e-10  Score=91.41  Aligned_cols=81  Identities=20%  Similarity=0.117  Sum_probs=50.3

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (163)
                      ++++.|++++|.+++..|..+.++++|++|++++|.+++..|..|..+++|++|++++|+++..++.  .+.+|+.++++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence            4566666666666654455666666666666666666655566666666666666666666643332  45566666665


Q ss_pred             CCC
Q 031242           85 GNK   87 (163)
Q Consensus        85 ~n~   87 (163)
                      +|.
T Consensus       130 ~N~  132 (562)
T 3a79_B          130 FND  132 (562)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.02  E-value=1.8e-10  Score=91.76  Aligned_cols=79  Identities=23%  Similarity=0.103  Sum_probs=37.6

Q ss_pred             CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccccC
Q 031242            6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEG   85 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~~   85 (163)
                      +|++|++++|.+++..|..+.++++|++|++++|.+++..|..+..+++|++|++++|+++..++.  .+.+|+.+++++
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~   99 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSF   99 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCS
T ss_pred             cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccC
Confidence            445555555555533334455555555555555555544444455555555555555554432222  344444444444


Q ss_pred             C
Q 031242           86 N   86 (163)
Q Consensus        86 n   86 (163)
                      |
T Consensus       100 N  100 (520)
T 2z7x_B          100 N  100 (520)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.02  E-value=3e-10  Score=85.95  Aligned_cols=84  Identities=21%  Similarity=0.268  Sum_probs=56.0

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      ..+++|+.|++++|.+++ + +.+..+++|+.|++++|.+++ +| .+..+++|+.|++++|++.+..|.. ..+++++.
T Consensus       240 ~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             TTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             hcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            456777777777777773 3 346677777777777777773 33 4666777777777777776655543 45667777


Q ss_pred             ccccCCCCC
Q 031242           81 TSYEGNKGL   89 (163)
Q Consensus        81 l~~~~n~~l   89 (163)
                      +++++|+..
T Consensus       316 L~L~~n~l~  324 (347)
T 4fmz_A          316 LFLSQNHIT  324 (347)
T ss_dssp             EECCSSSCC
T ss_pred             EEccCCccc
Confidence            777777543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.02  E-value=1.8e-10  Score=83.04  Aligned_cols=84  Identities=21%  Similarity=0.241  Sum_probs=47.4

Q ss_pred             CCCCCCCeEEccCCC-CCCCCCcccCCCcccceecccc-ccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCC
Q 031242            2 GQFKSLYALNMSHNA-LTGSIPSSFGNLKQIESLDLSM-NNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS   79 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~   79 (163)
                      .++++|+.|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|+.|++++|++++. |....+.+++
T Consensus        52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l-p~~~~l~~L~  130 (239)
T 2xwt_C           52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF-PDLTKVYSTD  130 (239)
T ss_dssp             TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC-CCCTTCCBCC
T ss_pred             cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc-cccccccccc
Confidence            345666666666665 5533334566666666666666 666643344556666666666666666653 3344444444


Q ss_pred             ---cccccCC
Q 031242           80 ---PTSYEGN   86 (163)
Q Consensus        80 ---~l~~~~n   86 (163)
                         .+++++|
T Consensus       131 ~L~~L~l~~N  140 (239)
T 2xwt_C          131 IFFILEITDN  140 (239)
T ss_dssp             SEEEEEEESC
T ss_pred             cccEEECCCC
Confidence               5555555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.01  E-value=2.3e-10  Score=87.00  Aligned_cols=85  Identities=25%  Similarity=0.264  Sum_probs=74.7

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCcccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSY   83 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~~   83 (163)
                      ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|++++.++. ...+.+|+.+++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            5799999999999965556899999999999999999977788899999999999999999987765 467889999999


Q ss_pred             cCCCCC
Q 031242           84 EGNKGL   89 (163)
Q Consensus        84 ~~n~~l   89 (163)
                      ++|...
T Consensus       132 ~~n~l~  137 (353)
T 2z80_A          132 LGNPYK  137 (353)
T ss_dssp             TTCCCS
T ss_pred             CCCCCc
Confidence            988543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.00  E-value=1e-10  Score=98.89  Aligned_cols=84  Identities=19%  Similarity=0.369  Sum_probs=63.7

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceecccccc-CCC-cCchhhcCCC-------CcccccccCccccCcCCC--
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN-LSG-KIPSQLASLN-------FLSVLNLSYNNLVGKIPT--   71 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~g-~~p~~~~~l~-------~L~~L~l~~N~l~~~~p~--   71 (163)
                      ++++|+.|+|++|.+.+.+|..++++++|+.|++++|+ ++| .+|..++.++       +|+.|++++|.++ .+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            78889999999999888899888888888888888887 887 6777665554       7777777777777 3443  


Q ss_pred             -CcccCCCCcccccCCC
Q 031242           72 -STQLQSFSPTSYEGNK   87 (163)
Q Consensus        72 -~~~l~~l~~l~~~~n~   87 (163)
                       ...+.+|+.+++++|.
T Consensus       568 ~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             HHTTCTTCCEEECTTSC
T ss_pred             hhhcCCCCCEEECCCCC
Confidence             4566666666666664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.99  E-value=5.1e-10  Score=91.79  Aligned_cols=84  Identities=19%  Similarity=0.218  Sum_probs=41.5

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPT   81 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l   81 (163)
                      ++++|++|++++|.+++..|..++++++|++|++++|.+++..+..|..+++|++|++++|++.+.+|. ...+.+|+.+
T Consensus        47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  126 (680)
T 1ziw_A           47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL  126 (680)
T ss_dssp             GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred             CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence            344555555555555544455555555555555555555522222355555555555555555544432 2344455555


Q ss_pred             cccCC
Q 031242           82 SYEGN   86 (163)
Q Consensus        82 ~~~~n   86 (163)
                      ++++|
T Consensus       127 ~Ls~n  131 (680)
T 1ziw_A          127 DLSHN  131 (680)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            55444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.98  E-value=6.7e-10  Score=84.23  Aligned_cols=79  Identities=18%  Similarity=0.119  Sum_probs=71.0

Q ss_pred             CeEEccCC-CCCCCCCcccCCCcccceecccc-ccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCccccc
Q 031242            8 YALNMSHN-ALTGSIPSSFGNLKQIESLDLSM-NNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYE   84 (163)
Q Consensus         8 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~   84 (163)
                      ..++.+++ .++ .+|. +..+++|+.|+|++ |.+++..|..|..+++|+.|+|++|+|++.+|.. ..+.+|+.++++
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45799998 899 7999 99999999999996 9999777788999999999999999999998865 779999999999


Q ss_pred             CCCC
Q 031242           85 GNKG   88 (163)
Q Consensus        85 ~n~~   88 (163)
                      +|..
T Consensus        89 ~N~l   92 (347)
T 2ifg_A           89 FNAL   92 (347)
T ss_dssp             SSCC
T ss_pred             CCcc
Confidence            9864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.96  E-value=1.4e-09  Score=91.94  Aligned_cols=84  Identities=24%  Similarity=0.330  Sum_probs=70.1

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccC--CCcccceeccccccCCCcCchhhcCCCCcccccccC------ccccCcCCCC-c
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFG--NLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY------NNLVGKIPTS-T   73 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~------N~l~~~~p~~-~   73 (163)
                      ++++|+.|+|++|+++ .+|..+.  .+++|+.|++++|.+++ +|..+..+++|+.|++++      |++.+.+|.. .
T Consensus       726 nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~  803 (876)
T 4ecn_A          726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT  803 (876)
T ss_dssp             TGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred             ccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence            3458999999999999 8888887  89999999999999995 788888999999998876      7777777754 6


Q ss_pred             ccCCCCcccccCCCC
Q 031242           74 QLQSFSPTSYEGNKG   88 (163)
Q Consensus        74 ~l~~l~~l~~~~n~~   88 (163)
                      .+.+|+.+++++|..
T Consensus       804 ~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          804 TCPSLIQLQIGSNDI  818 (876)
T ss_dssp             GCSSCCEEECCSSCC
T ss_pred             cCCCCCEEECCCCCC
Confidence            788888898888865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.96  E-value=1.3e-09  Score=81.11  Aligned_cols=78  Identities=29%  Similarity=0.436  Sum_probs=31.5

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~   83 (163)
                      +++|+.|++++|.+++ + +.+..+++|+.|++++|.+++ + ..+..+++|+.|++++|++++..+ ...+.+|+.+++
T Consensus       111 l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L  185 (291)
T 1h6t_A          111 LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYL  185 (291)
T ss_dssp             CTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEEC
Confidence            3344444444444432 2 223334444444444444442 1 233444444444444444444333 333444444444


Q ss_pred             cCC
Q 031242           84 EGN   86 (163)
Q Consensus        84 ~~n   86 (163)
                      ++|
T Consensus       186 ~~N  188 (291)
T 1h6t_A          186 SKN  188 (291)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.95  E-value=1.1e-09  Score=82.05  Aligned_cols=83  Identities=16%  Similarity=0.091  Sum_probs=47.3

Q ss_pred             CCCCeEEccCCCCCCCCCccc--CCCcccceeccccccCCCcCc----hhhcCCCCcccccccCccccCcCCCC-cccCC
Q 031242            5 KSLYALNMSHNALTGSIPSSF--GNLKQIESLDLSMNNLSGKIP----SQLASLNFLSVLNLSYNNLVGKIPTS-TQLQS   77 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~ls~N~l~g~~p----~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~   77 (163)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|.+++..|    ..+..+++|+.|++++|++.+.++.. ..+.+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            346666666666666666555  566666666666666665433    22334556666666666665555432 34555


Q ss_pred             CCcccccCCC
Q 031242           78 FSPTSYEGNK   87 (163)
Q Consensus        78 l~~l~~~~n~   87 (163)
                      |+.+++++|.
T Consensus       171 L~~L~Ls~N~  180 (310)
T 4glp_A          171 LTSLDLSDNP  180 (310)
T ss_dssp             CCEEECCSCT
T ss_pred             CCEEECCCCC
Confidence            5555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.94  E-value=1.7e-09  Score=81.02  Aligned_cols=37  Identities=24%  Similarity=0.522  Sum_probs=14.4

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCC
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS   42 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~   42 (163)
                      +++|+.|++++|.++ .+| .+..+++|+.|++++|.++
T Consensus        84 l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~  120 (308)
T 1h6u_A           84 LTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQIT  120 (308)
T ss_dssp             CCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCC
T ss_pred             CCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCC
Confidence            334444444444444 122 2333344444444444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.94  E-value=1.5e-09  Score=81.28  Aligned_cols=15  Identities=20%  Similarity=0.510  Sum_probs=6.4

Q ss_pred             CCCCCeEEccCCCCC
Q 031242            4 FKSLYALNMSHNALT   18 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~   18 (163)
                      +++|+.|++++|.++
T Consensus       106 l~~L~~L~l~~n~l~  120 (308)
T 1h6u_A          106 LQSIKTLDLTSTQIT  120 (308)
T ss_dssp             CTTCCEEECTTSCCC
T ss_pred             CCCCCEEECCCCCCC
Confidence            334444444444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.93  E-value=5.4e-10  Score=88.85  Aligned_cols=65  Identities=25%  Similarity=0.241  Sum_probs=39.0

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhc-CCCCcccccccCccccCc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLA-SLNFLSVLNLSYNNLVGK   68 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~l~~L~~L~l~~N~l~~~   68 (163)
                      +++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            45566666666666655566666666677777777776665555554 445555555555554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.91  E-value=1.6e-09  Score=80.53  Aligned_cols=59  Identities=29%  Similarity=0.370  Sum_probs=26.9

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCcccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLV   66 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~   66 (163)
                      +++|+.|++++|++++ ++. +..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++
T Consensus        67 l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~  125 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS  125 (291)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC
T ss_pred             CCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCC
Confidence            4445555555555552 222 4444455555555554442 22 2444444444444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.91  E-value=5.2e-10  Score=80.65  Aligned_cols=83  Identities=14%  Similarity=0.166  Sum_probs=52.2

Q ss_pred             CCCCCCeEEccC-CCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcc---cccccCc-cccCcCCC-CcccC
Q 031242            3 QFKSLYALNMSH-NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLS---VLNLSYN-NLVGKIPT-STQLQ   76 (163)
Q Consensus         3 ~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~---~L~l~~N-~l~~~~p~-~~~l~   76 (163)
                      ++++|+.|++++ |.+++..+..|.++++|++|++++|.++ .+|. +..+++|+   .+++++| .+.+.++. ...+.
T Consensus        78 ~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~  155 (239)
T 2xwt_C           78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC  155 (239)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred             CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchh
Confidence            466777777776 7777444456667777777777777776 3555 55666665   6666666 66655544 24455


Q ss_pred             CCC-cccccCCC
Q 031242           77 SFS-PTSYEGNK   87 (163)
Q Consensus        77 ~l~-~l~~~~n~   87 (163)
                      +++ .+++++|.
T Consensus       156 ~L~~~L~l~~n~  167 (239)
T 2xwt_C          156 NETLTLKLYNNG  167 (239)
T ss_dssp             SSEEEEECCSCC
T ss_pred             cceeEEEcCCCC
Confidence            666 66665553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.90  E-value=1.7e-09  Score=79.32  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=21.2

Q ss_pred             hcCCCCcccccccCccccCcCCCCcccCCCCcccccCCC
Q 031242           49 LASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNK   87 (163)
Q Consensus        49 ~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~~n~   87 (163)
                      +..+++|+.|++++|++++. +....+.+|+.+++++|.
T Consensus       124 l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          124 LIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             GTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSC
T ss_pred             hcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCc
Confidence            45555666666666665544 234455556666665554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.89  E-value=1.3e-09  Score=88.89  Aligned_cols=78  Identities=26%  Similarity=0.366  Sum_probs=34.7

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~   83 (163)
                      +++|+.|+|++|.+++ + +.+..+++|+.|++++|.+++..|  +..+++|+.|++++|++++. |....+.+|+.+++
T Consensus       130 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L  204 (605)
T 1m9s_A          130 LPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL  204 (605)
T ss_dssp             CTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEC
T ss_pred             CCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEc
Confidence            3344444444444442 1 234444444444444444443222  44444555555555554443 23344445555555


Q ss_pred             cCC
Q 031242           84 EGN   86 (163)
Q Consensus        84 ~~n   86 (163)
                      .+|
T Consensus       205 ~~N  207 (605)
T 1m9s_A          205 FSQ  207 (605)
T ss_dssp             CSE
T ss_pred             cCC
Confidence            544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.89  E-value=3.1e-09  Score=86.71  Aligned_cols=81  Identities=28%  Similarity=0.421  Sum_probs=57.5

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l   81 (163)
                      ..+++|+.|+|++|.+++ + +.+..+++|+.|++++|.+++ + ..+..+++|+.|++++|.+.+.+| ...+.+|+.+
T Consensus       106 ~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L  180 (605)
T 1m9s_A          106 KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL  180 (605)
T ss_dssp             TTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             ccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEE
Confidence            456667777777777763 3 346677777777777777774 3 456777888888888888887766 6677788888


Q ss_pred             cccCCC
Q 031242           82 SYEGNK   87 (163)
Q Consensus        82 ~~~~n~   87 (163)
                      ++++|.
T Consensus       181 ~Ls~N~  186 (605)
T 1m9s_A          181 YLSKNH  186 (605)
T ss_dssp             ECCSSC
T ss_pred             ECcCCC
Confidence            887774

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.89  E-value=3.4e-09  Score=77.78  Aligned_cols=78  Identities=28%  Similarity=0.409  Sum_probs=37.9

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~   83 (163)
                      +++|+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|... . ++|+.|++++|++++. +....+.+|+.+++
T Consensus        62 l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~L  135 (263)
T 1xeu_A           62 FTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLFLDNNELRDT-DSLIHLKNLEILSI  135 (263)
T ss_dssp             CTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEECCSSCCSBS-GGGTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEEccCCccCCC-hhhcCcccccEEEC
Confidence            444555555555555 2333 445555555555555554 233221 1 4555555555555543 23445556666666


Q ss_pred             cCCC
Q 031242           84 EGNK   87 (163)
Q Consensus        84 ~~n~   87 (163)
                      ++|.
T Consensus       136 s~N~  139 (263)
T 1xeu_A          136 RNNK  139 (263)
T ss_dssp             TTSC
T ss_pred             CCCc
Confidence            6653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.84  E-value=6.8e-09  Score=78.47  Aligned_cols=82  Identities=24%  Similarity=0.354  Sum_probs=58.3

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l   81 (163)
                      ..+++|++|++++|.++ .+|. +..+++|++|++++|.++ .+| .+..+++|++|++++|.+.+..+ ...+.+++.+
T Consensus        63 ~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L  137 (347)
T 4fmz_A           63 EYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSL  137 (347)
T ss_dssp             GGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred             hhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence            34677788888888777 4555 777788888888888777 344 47777888888888887776544 5566677777


Q ss_pred             cccCCCC
Q 031242           82 SYEGNKG   88 (163)
Q Consensus        82 ~~~~n~~   88 (163)
                      ++++|..
T Consensus       138 ~l~~n~~  144 (347)
T 4fmz_A          138 NLGANHN  144 (347)
T ss_dssp             ECTTCTT
T ss_pred             ECCCCCC
Confidence            7776643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.83  E-value=2.3e-09  Score=80.55  Aligned_cols=83  Identities=22%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhc-CCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLA-SLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      +++|+.|++++|++++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.. ....+.+++.++
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~  197 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLD  197 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEE
Confidence            45677777777777755555677777777777777777755555543 5667777777777766553 223355666666


Q ss_pred             ccCCC
Q 031242           83 YEGNK   87 (163)
Q Consensus        83 ~~~n~   87 (163)
                      +++|.
T Consensus       198 Ls~N~  202 (317)
T 3o53_A          198 LSSNK  202 (317)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            66654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.80  E-value=2.2e-11  Score=85.63  Aligned_cols=81  Identities=25%  Similarity=0.297  Sum_probs=52.8

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      .+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++. |....+.+++.++
T Consensus        46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~~~~~l~~L~~L~  121 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLY  121 (198)
T ss_dssp             HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-HHHHHHHHSSEEE
T ss_pred             cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-CccccCCCCCEEE
Confidence            35667777777777773 55 6666777777777777777 5666666666777777777776653 2344555666666


Q ss_pred             ccCCC
Q 031242           83 YEGNK   87 (163)
Q Consensus        83 ~~~n~   87 (163)
                      +++|.
T Consensus       122 l~~N~  126 (198)
T 1ds9_A          122 MSNNK  126 (198)
T ss_dssp             ESEEE
T ss_pred             CCCCc
Confidence            66553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.79  E-value=3.8e-09  Score=83.19  Aligned_cols=81  Identities=21%  Similarity=0.268  Sum_probs=44.5

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~   83 (163)
                      +++|+.|++++|.+++..|  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++.+| ...+..++.+++
T Consensus       308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l  382 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGL  382 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEEC
T ss_pred             CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEec
Confidence            4445555555555553322  44555555555555555532  245556666666666666666555 455566666666


Q ss_pred             cCCCCC
Q 031242           84 EGNKGL   89 (163)
Q Consensus        84 ~~n~~l   89 (163)
                      .+|++.
T Consensus       383 ~~n~~~  388 (466)
T 1o6v_A          383 NDQAWT  388 (466)
T ss_dssp             CCEEEE
T ss_pred             cCCccc
Confidence            666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.77  E-value=5.8e-09  Score=82.16  Aligned_cols=80  Identities=26%  Similarity=0.372  Sum_probs=57.3

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      .+++|++|++++|.++ .+|+ +.++++|++|++++|.+++ ++. +..+++|++|++++|.+.+.++ ...+.+|+.++
T Consensus        66 ~l~~L~~L~Ls~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~  140 (466)
T 1o6v_A           66 YLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIAD-ITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLE  140 (466)
T ss_dssp             GCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             hhcCCCEEECCCCccC-Cchh-hhccccCCEEECCCCcccc-Chh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEE
Confidence            4677888888888887 4444 7778888888888888874 343 7778888888888887776554 55666777776


Q ss_pred             ccCCC
Q 031242           83 YEGNK   87 (163)
Q Consensus        83 ~~~n~   87 (163)
                      +++|.
T Consensus       141 l~~n~  145 (466)
T 1o6v_A          141 LSSNT  145 (466)
T ss_dssp             EEEEE
T ss_pred             CCCCc
Confidence            66653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.77  E-value=2.7e-11  Score=85.20  Aligned_cols=85  Identities=20%  Similarity=0.217  Sum_probs=72.1

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC--CCcccCCCCc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSP   80 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~~   80 (163)
                      .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++|++++..+  ....+.+++.
T Consensus        68 ~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~  144 (198)
T 1ds9_A           68 GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED  144 (198)
T ss_dssp             HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred             cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence            4678999999999999 788888888999999999999994 56 68889999999999999987543  3467888999


Q ss_pred             ccccCCCCCC
Q 031242           81 TSYEGNKGLY   90 (163)
Q Consensus        81 l~~~~n~~lc   90 (163)
                      +++.+|+..+
T Consensus       145 L~l~~N~l~~  154 (198)
T 1ds9_A          145 LLLAGNPLYN  154 (198)
T ss_dssp             EEECSCHHHH
T ss_pred             EEecCCcccc
Confidence            9999987544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.75  E-value=1.4e-08  Score=80.05  Aligned_cols=16  Identities=38%  Similarity=0.407  Sum_probs=6.3

Q ss_pred             CCCCcccccccCcccc
Q 031242           51 SLNFLSVLNLSYNNLV   66 (163)
Q Consensus        51 ~l~~L~~L~l~~N~l~   66 (163)
                      .+++|++|++++|+++
T Consensus       104 ~l~~L~~L~L~~N~l~  119 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLT  119 (457)
T ss_dssp             TCTTCCEEECCSSCCS
T ss_pred             CCCcCCEEECCCCcCC
Confidence            3333344444443333

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.71  E-value=6.7e-09  Score=76.55  Aligned_cols=66  Identities=27%  Similarity=0.338  Sum_probs=47.1

Q ss_pred             CCCCCCeEEccCCCCCC--CCCcccCCCcccceeccccccCCCcCchhhcCCC--CcccccccCccccCcCC
Q 031242            3 QFKSLYALNMSHNALTG--SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLN--FLSVLNLSYNNLVGKIP   70 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~--~L~~L~l~~N~l~~~~p   70 (163)
                      ++++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|+.|++++|.+.+..|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            36778888888888885  3445566788888888888888753  2333343  78888888888877655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.71  E-value=3.5e-08  Score=77.80  Aligned_cols=63  Identities=30%  Similarity=0.260  Sum_probs=39.7

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP   70 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p   70 (163)
                      +.+++|+.|++++|.+++.   .++.+++|+.|++++|++++ +|  +..+++|+.|++++|++++.++
T Consensus       188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred             ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence            4556666677777766643   25666666666776666664 45  5566666666666666665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.68  E-value=2.1e-08  Score=81.31  Aligned_cols=78  Identities=23%  Similarity=0.229  Sum_probs=45.4

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCc-------ccccccCccccCcCCCCcccCC
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFL-------SVLNLSYNNLVGKIPTSTQLQS   77 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L-------~~L~l~~N~l~~~~p~~~~l~~   77 (163)
                      ++|+.|++++|.+++ +|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|++++|+++.+++....+.+
T Consensus       160 ~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~  231 (571)
T 3cvr_A          160 TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDP  231 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCT
T ss_pred             CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCC
Confidence            455666666666653 555 43  56666666666666 5555 433  55       6677777777655444555666


Q ss_pred             CCcccccCCCCCC
Q 031242           78 FSPTSYEGNKGLY   90 (163)
Q Consensus        78 l~~l~~~~n~~lc   90 (163)
                      +..+++++|+..+
T Consensus       232 L~~L~L~~N~l~~  244 (571)
T 3cvr_A          232 TCTIILEDNPLSS  244 (571)
T ss_dssp             TEEEECCSSSCCH
T ss_pred             CCEEEeeCCcCCC
Confidence            7777777776533

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.66  E-value=4.9e-08  Score=79.11  Aligned_cols=55  Identities=27%  Similarity=0.395  Sum_probs=25.8

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccC
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVG   67 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~   67 (163)
                      ++|+.|++++|.+++ +|. +.+  +|+.|++++|.+++ +|.   .+++|+.|++++|.+++
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM  154 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence            445555555555553 444 332  44555555555442 333   34444444444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.63  E-value=5.9e-08  Score=79.37  Aligned_cols=77  Identities=29%  Similarity=0.241  Sum_probs=54.9

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (163)
                      ++|+.|++++|.++ .+|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|+++..++....+.+|..+++.
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence            55677777777777 355   34567777777777777 5665   5677888888888888555455677888888888


Q ss_pred             CCCCC
Q 031242           85 GNKGL   89 (163)
Q Consensus        85 ~n~~l   89 (163)
                      +|+..
T Consensus       293 ~N~l~  297 (622)
T 3g06_A          293 GNPLS  297 (622)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            88654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.60  E-value=2.3e-09  Score=80.67  Aligned_cols=59  Identities=24%  Similarity=0.229  Sum_probs=23.3

Q ss_pred             CCCCeEEccCCCCCCC-CCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCc
Q 031242            5 KSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN   63 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N   63 (163)
                      ++|+.|++++|.+++. +|..+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            3344444444443322 3333334444444444444433333333333444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.58  E-value=2e-09  Score=82.76  Aligned_cols=88  Identities=18%  Similarity=0.224  Sum_probs=63.2

Q ss_pred             CCCCCCeEEccCCCCC----CCCCcccCCCcccceeccccccCCCc----Cchhh--cCCCCcccccccCccccC----c
Q 031242            3 QFKSLYALNMSHNALT----GSIPSSFGNLKQIESLDLSMNNLSGK----IPSQL--ASLNFLSVLNLSYNNLVG----K   68 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~--~~l~~L~~L~l~~N~l~~----~   68 (163)
                      .+++|+.|++++|.++    +.+|..+..+++|+.|++++|.+++.    +|..+  +.+++|+.|++++|.+++    .
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~  293 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT  293 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence            5677888888888874    46777777888888888888888754    45555  337888888888888876    2


Q ss_pred             CCC-C-cccCCCCcccccCCCCCC
Q 031242           69 IPT-S-TQLQSFSPTSYEGNKGLY   90 (163)
Q Consensus        69 ~p~-~-~~l~~l~~l~~~~n~~lc   90 (163)
                      +|. . ..+++|+.+++.+|+...
T Consensus       294 l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          294 LKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHhcCCCceEEEccCCcCCc
Confidence            333 2 346788888888886543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.55  E-value=1.3e-07  Score=74.61  Aligned_cols=75  Identities=23%  Similarity=0.291  Sum_probs=41.8

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (163)
                      ++|++|++++|.+++ +| .++++++|++|++++|++++ +|..+   .+|++|++++|++++. |....+..++.++++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEEL-PELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSC-CCCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcC-ccccCCCCCCEEECC
Confidence            356666666666663 55 36666666666666666663 44322   3555555666555552 344445555555555


Q ss_pred             CC
Q 031242           85 GN   86 (163)
Q Consensus        85 ~n   86 (163)
                      +|
T Consensus       204 ~N  205 (454)
T 1jl5_A          204 NN  205 (454)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.55  E-value=6.1e-08  Score=73.71  Aligned_cols=82  Identities=18%  Similarity=0.222  Sum_probs=57.3

Q ss_pred             CCCCeEEccCCCCCCCCC-cccCCCcccceeccccccCCCcCch-hhcCCCCccc-ccccCccccCcCCCC-cccCCCCc
Q 031242            5 KSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPS-QLASLNFLSV-LNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~g~~p~-~~~~l~~L~~-L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      +++++|+|++|+++ .+| ..|.++++|++|++++|++.+.+|. .|.++++++. +.+..|++...+|.. ..+.+|+.
T Consensus        30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            46788888888888 555 4678888888888888887655554 4666776654 455567777766654 55677777


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      +++.+|.
T Consensus       109 L~l~~n~  115 (350)
T 4ay9_X          109 LLISNTG  115 (350)
T ss_dssp             EEEEEEC
T ss_pred             ccccccc
Confidence            7776664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.53  E-value=7.6e-08  Score=73.15  Aligned_cols=71  Identities=23%  Similarity=0.222  Sum_probs=59.2

Q ss_pred             CCCCCCCCeEEccCCCCCCCCC-cccCCCcccce-eccccccCCCcCchhhcCCCCcccccccCccccCcCCC
Q 031242            1 MGQFKSLYALNMSHNALTGSIP-SSFGNLKQIES-LDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT   71 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~   71 (163)
                      |.++++|++|+|++|++.+.+| ..|.++++++. +.++.|+++...|..|..+++|+.+++++|++.+.++.
T Consensus        50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~  122 (350)
T 4ay9_X           50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV  122 (350)
T ss_dssp             STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred             HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCch
Confidence            4678999999999999876666 45788988775 56678999966678899999999999999999876653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.51  E-value=1.3e-08  Score=77.69  Aligned_cols=64  Identities=33%  Similarity=0.325  Sum_probs=34.2

Q ss_pred             CCCeEEccCCCCCCCCC----cccCCCc-ccceeccccccCCCcCchhhcCC-----CCcccccccCccccCcC
Q 031242            6 SLYALNMSHNALTGSIP----SSFGNLK-QIESLDLSMNNLSGKIPSQLASL-----NFLSVLNLSYNNLVGKI   69 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~l-----~~L~~L~l~~N~l~~~~   69 (163)
                      +|+.|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|+.|++++|++++..
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~   96 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS   96 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence            35666666666553333    4444555 56666666665554444444443     55555555555555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.48  E-value=3.5e-07  Score=72.03  Aligned_cols=61  Identities=23%  Similarity=0.377  Sum_probs=39.1

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccC
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVG   67 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~   67 (163)
                      ++++++|++|++++|+++ .+|..+   .+|++|++++|.+++ +| .+..+++|+.|++++|++++
T Consensus       149 ~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             CTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             cCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence            356677777777777777 355433   366677777777763 55 45666666666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.41  E-value=2.6e-08  Score=76.55  Aligned_cols=86  Identities=19%  Similarity=0.182  Sum_probs=55.9

Q ss_pred             CCCCCCCeEEccCC---CCCCCCCccc-------CCCcccceeccccccCCC----cCchhhcCCCCcccccccCccccC
Q 031242            2 GQFKSLYALNMSHN---ALTGSIPSSF-------GNLKQIESLDLSMNNLSG----KIPSQLASLNFLSVLNLSYNNLVG   67 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~ls~N~l~g----~~p~~~~~l~~L~~L~l~~N~l~~   67 (163)
                      ..+++|+.|++++|   ++++.+|..+       ..+++|++|++++|.+++    .+|..+..+++|+.|++++|.+..
T Consensus        57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  136 (386)
T 2ca6_A           57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP  136 (386)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence            45677778887775   3444455544       567788888888888775    366677777888888888887753


Q ss_pred             cCCCC-----ccc---------CCCCcccccCCC
Q 031242           68 KIPTS-----TQL---------QSFSPTSYEGNK   87 (163)
Q Consensus        68 ~~p~~-----~~l---------~~l~~l~~~~n~   87 (163)
                      ..+..     ..+         +.|+.+++++|.
T Consensus       137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A          137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            32211     112         566777776664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.40  E-value=1.4e-08  Score=77.49  Aligned_cols=85  Identities=27%  Similarity=0.345  Sum_probs=54.1

Q ss_pred             CCC-CCCeEEccCCCCCCCCCcccCCC-----cccceeccccccCCCcCchhhcC----C-CCcccccccCccccCcCCC
Q 031242            3 QFK-SLYALNMSHNALTGSIPSSFGNL-----KQIESLDLSMNNLSGKIPSQLAS----L-NFLSVLNLSYNNLVGKIPT   71 (163)
Q Consensus         3 ~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~ls~N~l~g~~p~~~~~----l-~~L~~L~l~~N~l~~~~p~   71 (163)
                      +++ +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..+..    + ++|+.|++++|++++..+.
T Consensus        48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  127 (362)
T 3goz_A           48 NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS  127 (362)
T ss_dssp             TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH
Confidence            345 67788888887776556555554     77778888888777655554333    3 6777777777777655442


Q ss_pred             C-----cc-cCCCCcccccCCC
Q 031242           72 S-----TQ-LQSFSPTSYEGNK   87 (163)
Q Consensus        72 ~-----~~-l~~l~~l~~~~n~   87 (163)
                      .     .. ..+++.+++++|.
T Consensus       128 ~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A          128 EFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHHHHHTTSCTTCCEEECTTSC
T ss_pred             HHHHHHHhCCCceeEEEccCCc
Confidence            2     11 2466666666653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.40  E-value=6.3e-08  Score=72.74  Aligned_cols=84  Identities=14%  Similarity=0.163  Sum_probs=70.0

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCc-CchhhcCCCCcccccccCccccCcCCC-CcccCCCCccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK-IPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTS   82 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~   82 (163)
                      +.++.|++++|.+++..+. +..+++|++|++++|.+++. +|..+..+++|+.|++++|.+++..+. ...+++|+.++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            6789999999999966555 66899999999999999865 888899999999999999998865543 35678889999


Q ss_pred             ccCCCCC
Q 031242           83 YEGNKGL   89 (163)
Q Consensus        83 ~~~n~~l   89 (163)
                      +.+|..+
T Consensus       149 L~~~~~l  155 (336)
T 2ast_B          149 LSGCSGF  155 (336)
T ss_dssp             CTTCBSC
T ss_pred             CCCCCCC
Confidence            8888533

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.39  E-value=5.1e-07  Score=73.86  Aligned_cols=54  Identities=28%  Similarity=0.343  Sum_probs=23.8

Q ss_pred             CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccC
Q 031242            6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVG   67 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~   67 (163)
                      +|+.|++++|.++ .+|.   .+++|++|++++|+++ .+|.   .+++|+.|++++|.+++
T Consensus        62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~  115 (622)
T 3g06_A           62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH  115 (622)
T ss_dssp             TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC
T ss_pred             CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC
Confidence            3444555555444 3333   2344444444444444 3333   33444444444444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.16  E-value=8.9e-07  Score=65.17  Aligned_cols=64  Identities=28%  Similarity=0.351  Sum_probs=51.5

Q ss_pred             CCCcccceeccccccCCC--cCchhhcCCCCcccccccCccccCcCCCCcccC--CCCcccccCCCCCCC
Q 031242           26 GNLKQIESLDLSMNNLSG--KIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQ--SFSPTSYEGNKGLYG   91 (163)
Q Consensus        26 ~~l~~L~~L~ls~N~l~g--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~--~l~~l~~~~n~~lc~   91 (163)
                      .++++|+.|+|++|.+++  .+|..+..+++|+.|+|++|++++. .....+.  .|+.+.+.+|+ +|+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np-l~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS-LCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST-TGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc-Ccc
Confidence            457899999999999997  4567778899999999999999976 2233344  88899999998 453

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.09  E-value=1.2e-07  Score=74.10  Aligned_cols=63  Identities=29%  Similarity=0.227  Sum_probs=26.9

Q ss_pred             CCCCCeEEccCCCCCCCCCcccC-----CCcccceeccccccCCCc----CchhhcCCCCcccccccCcccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLV   66 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~   66 (163)
                      +++|+.|++++|.++...+..+.     ..++|+.|++++|.+++.    ++..+..+++|+.|++++|.+.
T Consensus       283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence            44555555555555422111111     113445555555544432    2333334444445555444444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.91  E-value=7e-07  Score=69.71  Aligned_cols=63  Identities=19%  Similarity=0.169  Sum_probs=30.4

Q ss_pred             CCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCCcC-----chhhcCCCCcccccccCccccC
Q 031242            5 KSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKI-----PSQLASLNFLSVLNLSYNNLVG   67 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~~-----p~~~~~l~~L~~L~l~~N~l~~   67 (163)
                      ++|+.|++++|.+++.    ++..+..+++|++|++++|.++...     +..+..+++|+.|++++|.++.
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~  270 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA  270 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence            3555555555555532    3444445555555555555554221     1111234555555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.83  E-value=6.8e-07  Score=68.76  Aligned_cols=84  Identities=20%  Similarity=0.219  Sum_probs=49.7

Q ss_pred             CCCCCeEEccCCCCCC----CCCcccCCCcccceeccccccCCCc----CchhhcCCCCcccccccCccccCcCCC----
Q 031242            4 FKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLVGKIPT----   71 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~~~~p~----   71 (163)
                      .++|+.|+|++|.++.    .++..+...++|++|++++|.++..    ++..+...++|+.|++++|.++.....    
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            4567777777777652    1333445566777777777776532    234455566777777777776532211    


Q ss_pred             -CcccCCCCcccccCCC
Q 031242           72 -STQLQSFSPTSYEGNK   87 (163)
Q Consensus        72 -~~~l~~l~~l~~~~n~   87 (163)
                       ....++|+.+++++|+
T Consensus       234 ~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          234 AAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHCSSCCEEECTTSS
T ss_pred             HHHhCCCCCEEeccCCC
Confidence             1234567777777764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.81  E-value=1.8e-05  Score=59.37  Aligned_cols=81  Identities=20%  Similarity=0.226  Sum_probs=64.5

Q ss_pred             CCCCCeEEccCCCCCCCCC-cccCCCcccceeccccccCCCcCchhhcCCCCcc-cccccCccccCcCCCC-cccCCCCc
Q 031242            4 FKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLS-VLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      +++|+.+++++|+++ .+| ..|.++.+|+.+++++| ++..-+..|..+.+|+ .+++++ .++...+.. ..+.+|+.
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            689999999999999 555 56999999999999998 7744556799999999 999988 666555443 56778888


Q ss_pred             ccccCCC
Q 031242           81 TSYEGNK   87 (163)
Q Consensus        81 l~~~~n~   87 (163)
                      +.+.+|.
T Consensus       302 l~l~~n~  308 (329)
T 3sb4_A          302 VLATGDK  308 (329)
T ss_dssp             EEECSSC
T ss_pred             EEeCCCc
Confidence            8776653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.72  E-value=3.8e-05  Score=57.61  Aligned_cols=79  Identities=14%  Similarity=0.087  Sum_probs=62.7

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccc-eeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCC
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIE-SLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSF   78 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l   78 (163)
                      |.++.+|+.+++++| ++..-+.+|.++.+|+ .+++++ .++..-+..|..+++|+.+++++|.+....+.. ..+.+|
T Consensus       246 F~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L  323 (329)
T 3sb4_A          246 FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS  323 (329)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred             hhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence            457889999999998 7744456799999999 999998 777455678999999999999999998776643 445555


Q ss_pred             Ccc
Q 031242           79 SPT   81 (163)
Q Consensus        79 ~~l   81 (163)
                      +.+
T Consensus       324 ~~l  326 (329)
T 3sb4_A          324 KLI  326 (329)
T ss_dssp             CEE
T ss_pred             hhh
Confidence            544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.63  E-value=2.8e-06  Score=68.28  Aligned_cols=83  Identities=7%  Similarity=0.089  Sum_probs=57.4

Q ss_pred             CCCCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCC----cCchhhcCCCCcccccccCccccCcCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSG----KIPSQLASLNFLSVLNLSYNNLVGKIPTSTQ   74 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~   74 (163)
                      .+++|++|++++|.+++.    ++..+..+++|++|++++|.+++    .++..+..+++|+.|++++|.+.+.+.....
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            467888888888887654    33344567888888888888873    3344456778888888888887764433345


Q ss_pred             cCCCCcccccC
Q 031242           75 LQSFSPTSYEG   85 (163)
Q Consensus        75 l~~l~~l~~~~   85 (163)
                      +.+++.+.+..
T Consensus       242 ~~~L~~L~l~~  252 (592)
T 3ogk_B          242 AANLEEFCGGS  252 (592)
T ss_dssp             CTTCCEEEECB
T ss_pred             hhHHHhhcccc
Confidence            56666666643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.60  E-value=0.00012  Score=47.87  Aligned_cols=57  Identities=28%  Similarity=0.338  Sum_probs=39.5

Q ss_pred             CeEEccCCCCC-CCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCcccc
Q 031242            8 YALNMSHNALT-GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLV   66 (163)
Q Consensus         8 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~   66 (163)
                      ..++.+++.++ ..+|..+  ..+|+.|+|++|+|+..-+..|..+++|+.|++++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777888876 3566543  246788888888888433445677888888888887664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.57  E-value=8.2e-05  Score=48.69  Aligned_cols=58  Identities=19%  Similarity=0.173  Sum_probs=47.0

Q ss_pred             ceeccccccCC-CcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcccccCCCCCCC
Q 031242           32 ESLDLSMNNLS-GKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEGNKGLYG   91 (163)
Q Consensus        32 ~~L~ls~N~l~-g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~~n~~lc~   91 (163)
                      ..++.+++.++ ..+|..+  -.+|+.|+|++|+|+.+++.. ..+..|+.+.+.+||+.|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            46788888886 3677653  247999999999999887765 5678899999999999996

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.56  E-value=3.5e-06  Score=58.48  Aligned_cols=86  Identities=12%  Similarity=0.092  Sum_probs=60.6

Q ss_pred             CCCCCCCeEEccCC-CCCCC----CCcccCCCcccceeccccccCCCc----CchhhcCCCCcccccccCccccCcC---
Q 031242            2 GQFKSLYALNMSHN-ALTGS----IPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLVGKI---   69 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~~~~---   69 (163)
                      ...+.|++|+|++| .+...    +...+...++|++|++++|.+...    +...+...++|++|++++|.+....   
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            35678999999999 88632    345566778899999999998732    2333555678999999999887421   


Q ss_pred             --CCCcccCCCCcccc--cCCC
Q 031242           70 --PTSTQLQSFSPTSY--EGNK   87 (163)
Q Consensus        70 --p~~~~l~~l~~l~~--~~n~   87 (163)
                        .......+++.+++  .+|.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSC
T ss_pred             HHHHHHhCCCceEEEecCCCCC
Confidence              12244567888888  6564

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.52  E-value=1.1e-05  Score=64.86  Aligned_cols=60  Identities=15%  Similarity=0.068  Sum_probs=26.7

Q ss_pred             CcccceeccccccCCC-cCchhhcCCCCcccccccCccccCc-CCCC-cccCCCCcccccCCC
Q 031242           28 LKQIESLDLSMNNLSG-KIPSQLASLNFLSVLNLSYNNLVGK-IPTS-TQLQSFSPTSYEGNK   87 (163)
Q Consensus        28 l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~-~~l~~l~~l~~~~n~   87 (163)
                      +++|++|++++|.+++ .++..+..+++|+.|++++|.+++. ++.. ..+++|+.+++++|.
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            4455555555555543 1233334455555555555554322 1111 234445555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.52  E-value=8.9e-06  Score=56.37  Aligned_cols=65  Identities=15%  Similarity=0.147  Sum_probs=40.2

Q ss_pred             CCCCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCCc----CchhhcCCCCcccccc--cCccccC
Q 031242            3 QFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNL--SYNNLVG   67 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l--~~N~l~~   67 (163)
                      ..++|++|+|++|.++..    +...+...++|++|++++|.+...    +...+...++|+.|++  ++|.+..
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            345677777777777631    233344456677777777777632    2344555667777777  6677653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.52  E-value=6.9e-06  Score=63.11  Aligned_cols=66  Identities=18%  Similarity=0.318  Sum_probs=52.3

Q ss_pred             CCCCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCCc----CchhhcCCCCcccccccCccccCc
Q 031242            3 QFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLVGK   68 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~~~   68 (163)
                      ..++|++|+|++|.++..    ++..+...++|+.|++++|.++..    +...+...++|+.|++++|.++..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            467899999999999742    355667788999999999999843    334455678999999999998743

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.44  E-value=4.4e-06  Score=67.16  Aligned_cols=61  Identities=13%  Similarity=0.081  Sum_probs=36.0

Q ss_pred             CcccceeccccccCCCcCchhh-cCCCCcccccccCccccCcCCC--CcccCCCCcccccCCCC
Q 031242           28 LKQIESLDLSMNNLSGKIPSQL-ASLNFLSVLNLSYNNLVGKIPT--STQLQSFSPTSYEGNKG   88 (163)
Q Consensus        28 l~~L~~L~ls~N~l~g~~p~~~-~~l~~L~~L~l~~N~l~~~~p~--~~~l~~l~~l~~~~n~~   88 (163)
                      +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++....  ...+++|+.+++.+|+.
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            5666777777776654433333 4567777777777776433221  13456677777766643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.22  E-value=2.7e-05  Score=62.50  Aligned_cols=83  Identities=14%  Similarity=0.107  Sum_probs=45.6

Q ss_pred             CCCCCeEEccCCCCCCCCCcccC-CCcccceeccccc-cCCCc-CchhhcCCCCcccccccCccccCcCCCC-----ccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFG-NLKQIESLDLSMN-NLSGK-IPSQLASLNFLSVLNLSYNNLVGKIPTS-----TQL   75 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~ls~N-~l~g~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~-----~~l   75 (163)
                      +++|+.|++++|.+++..+..+. .+++|+.|++++| .++.. ++.....+++|++|++++|.+++..+..     ..+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            45677777777766654444443 4667777777666 33321 3333445667777777777655432211     134


Q ss_pred             CCCCcccccCC
Q 031242           76 QSFSPTSYEGN   86 (163)
Q Consensus        76 ~~l~~l~~~~n   86 (163)
                      .+|+.+++.+|
T Consensus       184 ~~L~~L~l~~~  194 (594)
T 2p1m_B          184 TSLVSLNISCL  194 (594)
T ss_dssp             CCCCEEECTTC
T ss_pred             CcCcEEEeccc
Confidence            45555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.12  E-value=4.5e-05  Score=52.58  Aligned_cols=85  Identities=11%  Similarity=0.145  Sum_probs=55.4

Q ss_pred             CCCeEEccCCCCCCCCCcccCCCcccceecccccc-CCCcCchhhcCC----CCcccccccCcc-ccCc-CCCCcccCCC
Q 031242            6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNN-LSGKIPSQLASL----NFLSVLNLSYNN-LVGK-IPTSTQLQSF   78 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~l----~~L~~L~l~~N~-l~~~-~p~~~~l~~l   78 (163)
                      +|+.||++++.++..--..+..+++|++|+|+++. ++..--..+..+    ++|+.|+++++. ++.. +.....+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            47888999888774333456788889999998874 553333345554    368889988874 5532 1122456777


Q ss_pred             CcccccCCCCCC
Q 031242           79 SPTSYEGNKGLY   90 (163)
Q Consensus        79 ~~l~~~~n~~lc   90 (163)
                      +.+++.+.+.+.
T Consensus       142 ~~L~L~~c~~It  153 (176)
T 3e4g_A          142 KYLFLSDLPGVK  153 (176)
T ss_dssp             CEEEEESCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            888777665443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.98  E-value=4.6e-05  Score=58.38  Aligned_cols=85  Identities=11%  Similarity=0.078  Sum_probs=56.6

Q ss_pred             CCCCCCeEEccC--CCCCCC-----CCccc--CCCcccceeccccccCCCcCchhhc---CCCCcccccccCccccCcC-
Q 031242            3 QFKSLYALNMSH--NALTGS-----IPSSF--GNLKQIESLDLSMNNLSGKIPSQLA---SLNFLSVLNLSYNNLVGKI-   69 (163)
Q Consensus         3 ~l~~L~~L~Ls~--N~l~~~-----~p~~~--~~l~~L~~L~ls~N~l~g~~p~~~~---~l~~L~~L~l~~N~l~~~~-   69 (163)
                      .+++|+.|+|+.  |...+.     +...+  ..+++|+.|++++|.+....+..+.   .+++|+.|+++.|.+.+.. 
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            578999999863  222211     11222  2578999999999988744433333   4789999999999987632 


Q ss_pred             ---CCC-cccCCCCcccccCCC
Q 031242           70 ---PTS-TQLQSFSPTSYEGNK   87 (163)
Q Consensus        70 ---p~~-~~l~~l~~l~~~~n~   87 (163)
                         +.. ..+++|+.++++.|.
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHhhcccCCcceEEECCCCc
Confidence               222 456788888887774

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.75  E-value=0.0026  Score=49.22  Aligned_cols=59  Identities=7%  Similarity=0.038  Sum_probs=26.1

Q ss_pred             CCCCCCeEEccCCCCC-----CCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccC
Q 031242            3 QFKSLYALNMSHNALT-----GSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY   62 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~   62 (163)
                      ++++|+.+++++|.+.     ..-+..|.++++|+.+++.+ .++..-...|..+.+|+.+++..
T Consensus       269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred             CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence            3445555555544432     11223444555555555552 24322233444555555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.34  E-value=0.00055  Score=52.36  Aligned_cols=84  Identities=14%  Similarity=0.131  Sum_probs=49.9

Q ss_pred             CCCCCeEEccCCCCCCCCCcccC--CCcccceecccc--ccCCCc-----Cchhh--cCCCCcccccccCccccCcCCC-
Q 031242            4 FKSLYALNMSHNALTGSIPSSFG--NLKQIESLDLSM--NNLSGK-----IPSQL--ASLNFLSVLNLSYNNLVGKIPT-   71 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~ls~--N~l~g~-----~p~~~--~~l~~L~~L~l~~N~l~~~~p~-   71 (163)
                      +++|+.|++..+.++...-..+.  .+++|+.|+|+.  |...+.     +...+  ..+++|+.|++.+|.+....+. 
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            56888888888777633223332  678888888753  222111     11112  2468888999988877642211 


Q ss_pred             ---CcccCCCCcccccCCC
Q 031242           72 ---STQLQSFSPTSYEGNK   87 (163)
Q Consensus        72 ---~~~l~~l~~l~~~~n~   87 (163)
                         ...++.|+.++++.|.
T Consensus       272 la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSC
T ss_pred             HHhCccCCCCCEEECCCCC
Confidence               1246677778776653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.16  E-value=0.0082  Score=46.41  Aligned_cols=60  Identities=18%  Similarity=0.156  Sum_probs=35.0

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN   63 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N   63 (163)
                      .++.+|+.++++.|.++ .+|.......+|+.+.+.++ ++..-...|..+++|+.+++..|
T Consensus       177 ~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          177 YYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             TTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred             hCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence            45677777777777766 44443333466666666533 44233345666666776666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.05  E-value=0.00066  Score=46.71  Aligned_cols=63  Identities=13%  Similarity=0.105  Sum_probs=46.5

Q ss_pred             CCCCCCCeEEccCCC-CCCCCCcccCCC----cccceecccccc-CCCcCchhhcCCCCcccccccCcc
Q 031242            2 GQFKSLYALNMSHNA-LTGSIPSSFGNL----KQIESLDLSMNN-LSGKIPSQLASLNFLSVLNLSYNN   64 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~ls~N~-l~g~~p~~~~~l~~L~~L~l~~N~   64 (163)
                      ..+++|+.|+|+++. ++..--..+..+    ++|++|+++++. ++..--..+..+++|+.|+++++.
T Consensus        82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A           82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            578999999999985 663222334444    479999999974 764333457789999999999874

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.19  E-value=0.07  Score=40.72  Aligned_cols=59  Identities=15%  Similarity=0.126  Sum_probs=30.2

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN   63 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N   63 (163)
                      .+.+|+.+.+..+ ++..-..+|.++.+|+.+++.++ ++..-...|..+.+|+.+++..|
T Consensus       295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            3455555555433 33122244556666666666543 44222345666666666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.03  E-value=0.12  Score=38.99  Aligned_cols=39  Identities=10%  Similarity=0.074  Sum_probs=19.7

Q ss_pred             ccCCCcccceeccccccCCCcCchhhcCCCCcccccccC
Q 031242           24 SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY   62 (163)
Q Consensus        24 ~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~   62 (163)
                      .|.++.+|+.+.+.++.++..-...|.++.+|+.+++..
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            344555555555555555422233455555555555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.91  E-value=0.1  Score=39.79  Aligned_cols=61  Identities=11%  Similarity=0.242  Sum_probs=27.7

Q ss_pred             ccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCC-CcccCCCCcccccCC
Q 031242           24 SFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSYEGN   86 (163)
Q Consensus        24 ~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~~~~n   86 (163)
                      .|.++.+|+.+++..+ ++..-...|..+.+|+.+.+..+ ++..... ...+.+|+.+.+.++
T Consensus       306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            4555555555555543 33122334555556665555433 2222111 134445555555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.85  E-value=0.078  Score=40.08  Aligned_cols=62  Identities=16%  Similarity=0.167  Sum_probs=47.9

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCc
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN   63 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N   63 (163)
                      |.++.+|+.+.+.++.++..-..+|.++.+|+.+.+..+ ++..-...|.++.+|+.+++..+
T Consensus       282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            346788999999998888334467899999999999865 55233457888999999887654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.61  E-value=0.077  Score=40.48  Aligned_cols=63  Identities=14%  Similarity=0.231  Sum_probs=47.8

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccc
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL   65 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l   65 (163)
                      |.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++..-...|.++++|+.+++.++..
T Consensus       307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            346788999998765 55233467889999999999765 6633356799999999999988754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.02  E-value=0.015  Score=40.63  Aligned_cols=83  Identities=20%  Similarity=0.205  Sum_probs=54.6

Q ss_pred             CCCCCeEEccCC-CCCC----CCCcccCCCcccceeccccccCCCc----CchhhcCCCCcccccccCccccCcCCC---
Q 031242            4 FKSLYALNMSHN-ALTG----SIPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLVGKIPT---   71 (163)
Q Consensus         4 l~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~~~~p~---   71 (163)
                      =+.|+.|+|++| .+..    .+-+.+..-+.|+.|+|++|.+...    +-..+..-+.|+.|+|++|.|....-.   
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            357899999985 6652    1334566668899999999998632    122244457899999999998732211   


Q ss_pred             --CcccCCCCcccccCC
Q 031242           72 --STQLQSFSPTSYEGN   86 (163)
Q Consensus        72 --~~~l~~l~~l~~~~n   86 (163)
                        ...-..|+.+.+++|
T Consensus       120 ~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCceeEEECCCC
Confidence              123445677777543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.01  E-value=0.082  Score=40.32  Aligned_cols=61  Identities=11%  Similarity=0.140  Sum_probs=47.0

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCc
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN   63 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N   63 (163)
                      |.++.+|+.+++..+ ++..-..+|.++.+|+.+++..| ++..-...|..+.+|+.+++..+
T Consensus       316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            356789999999754 66233467899999999999877 66344567889999999988754

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=91.49  E-value=0.053  Score=27.29  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=12.4

Q ss_pred             eeeeehhhhHHhHHHHHHHHHhh
Q 031242          120 FFIAMSIGFAVGFGAVVSPLMFS  142 (163)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~  142 (163)
                      .+.+++++.+++++++..+.+|+
T Consensus        12 aIAGiVvG~v~gv~li~~l~~~~   34 (38)
T 2k1k_A           12 EIVAVIFGLLLGAALLLGILVFR   34 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeeehHHHHHHHHHHHHHHHH
Confidence            44556666666555555444433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.01  E-value=0.039  Score=38.53  Aligned_cols=60  Identities=10%  Similarity=0.150  Sum_probs=43.1

Q ss_pred             CCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCCcC----chhhcCCCCcccccccCcc
Q 031242            5 KSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKI----PSQLASLNFLSVLNLSYNN   64 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~~----p~~~~~l~~L~~L~l~~N~   64 (163)
                      +.|+.|+|++|.+...    +.+.+..=+.|++|+|++|.|...-    -+.+..-+.|+.|++++|.
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence            5799999999999732    3334445578999999999997421    1224445679999998753

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=90.82  E-value=0.083  Score=27.41  Aligned_cols=25  Identities=12%  Similarity=-0.005  Sum_probs=12.0

Q ss_pred             eeeehhhhHHhHHHHHHHHHhhhhH
Q 031242          121 FIAMSIGFAVGFGAVVSPLMFSVQV  145 (163)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~  145 (163)
                      +++.++|+++.+.+.++.++|.||+
T Consensus        14 Ia~~vVGvll~vi~~l~~~~~~RRR   38 (44)
T 2jwa_A           14 IISAVVGILLVVVLGVVFGILIKRR   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhheehh
Confidence            4555566444444444444454444

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=87.14  E-value=0.35  Score=25.05  Aligned_cols=9  Identities=11%  Similarity=-0.023  Sum_probs=3.4

Q ss_pred             eehhhhHHh
Q 031242          123 AMSIGFAVG  131 (163)
Q Consensus       123 ~~~~~~~~~  131 (163)
                      +.+++.+++
T Consensus        15 ~gVVgGv~~   23 (44)
T 2ks1_B           15 TGMVGALLL   23 (44)
T ss_dssp             HHHHHHHHH
T ss_pred             eehhHHHHH
Confidence            333443333

>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}

Probab=83.16  E-value=1.2  Score=21.56  Aligned_cols=23  Identities=13%  Similarity=0.151  Sum_probs=12.3

Q ss_pred             ehhhhHHhHHHHHHHHHhhhhHH
Q 031242          124 MSIGFAVGFGAVVSPLMFSVQVN  146 (163)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~  146 (163)
                      +++|.++++.++-..++++|.+|
T Consensus        12 ~i~gl~vif~~lg~tflywrgrr   34 (40)
T 2l9u_A           12 VIAGLVVIFMMLGGTFLYWRGRR   34 (40)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCceeEEEcccc
Confidence            34555555555555566665543

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=82.93  E-value=0.44  Score=24.65  Aligned_cols=9  Identities=33%  Similarity=-0.082  Sum_probs=3.4

Q ss_pred             eehhhhHHh
Q 031242          123 AMSIGFAVG  131 (163)
Q Consensus       123 ~~~~~~~~~  131 (163)
                      +.+++.+++
T Consensus        14 ~gVVgGv~~   22 (44)
T 2l2t_A           14 AGVIGGLFI   22 (44)
T ss_dssp             HHHHHHHHH
T ss_pred             EeehHHHHH
Confidence            333443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.9 bits (190), Expect = 2e-18
 Identities = 30/66 (45%), Positives = 38/66 (57%)

Query: 29  KQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKG 88
           K +  LDL  N + G +P  L  L FL  LN+S+NNL G+IP    LQ F  ++Y  NK 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

Query: 89  LYGPPL 94
           L G PL
Sbjct: 304 LCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.4 bits (103), Expect = 1e-06
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 46
           + Q K L++LN+S N L G IP   GNL++ +    + N      P
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.9 bits (141), Expect = 2e-11
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
                L  L  ++N ++    SS  NL  I  L    N +S   P  LA+L  ++ L L+
Sbjct: 326 SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 381

Query: 62  YN 63
             
Sbjct: 382 DQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 2e-10
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +   K+L  L +  N ++   P    +L +++ L  + N +S    S LA+L  ++ L+ 
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 61  SYNNLVGKIP 70
            +N +    P
Sbjct: 359 GHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +G   +L  L+++ N L      +  +L  +  LDL+ N +S   P  L+ L  L+ L L
Sbjct: 215 LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 61  SYNNLVGKIP 70
             N +    P
Sbjct: 271 GANQISNISP 280

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 4  FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN 63
                  +    +T ++  +  +L Q+ +L      +   I   +  LN L+ +N S N
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 76

Query: 64 NLVGKIP 70
           L    P
Sbjct: 77 QLTDITP 83

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 3  QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
              +  L      +  SI      L  +  ++ S N L+   P  L +L  L  + ++ 
Sbjct: 42 DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 97

Query: 63 NN 64
          N 
Sbjct: 98 NQ 99

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 27/117 (23%), Positives = 39/117 (33%)

Query: 5   KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
                L++ +N +T      F NLK + +L L  N +S   P   A L  L  L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 65  LVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSELPPSPPPASSDEIDWFF 121
           L        +              +        +Q    EL  +P  +S  E   F 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 6e-05
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 3/105 (2%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
               K L  + ++   +T +IP   G    +  L L  N ++    + L  LN L+ L L
Sbjct: 146 FQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 61  SYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQTRPSEL 105
           S+N++      S          +  N  L   P           +
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 247

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 16/64 (25%), Positives = 27/64 (42%)

Query: 2   GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
              K+L+ L + +N ++   P +F  L ++E L LS N L         +L  L V    
Sbjct: 52  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 111

Query: 62  YNNL 65
              +
Sbjct: 112 ITKV 115

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 1e-08
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 3   QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
              SL  LN+S+N L   +P+    L   E L  S N+L+ ++P    +L     L++ Y
Sbjct: 282 LPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNL---KQLHVEY 333

Query: 63  NNL 65
           N L
Sbjct: 334 NPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 7e-06
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 5  KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNN 64
          +  + L +++  L+ S+P    +L   ESL  S N+L+ ++P    SL  L V N +   
Sbjct: 38 RQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 65 L 65
          L
Sbjct: 93 L 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-05
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 4   FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLN 59
              L  L  S N L   +P    NLK    L +  N L  + P    S+  L + +
Sbjct: 303 PPRLERLIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 4e-04
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 11  NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP 70
               NA +  I S       +E L++S N L  ++P+       L  L  S+N+L     
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAEVPE 321

Query: 71  TSTQLQSFS 79
               L+   
Sbjct: 322 LPQNLKQLH 330

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 3e-08
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 6  SLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNL 60
           + +L++    L+ +        L+Q + + L    L+      I S L     L+ LNL
Sbjct: 3  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 61 SYNNL 65
            N L
Sbjct: 63 RSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 9e-08
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 9/76 (11%)

Query: 4   FKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGKIPSQLAS-----LNF 54
              L  L ++   ++     S+ ++      +  LDLS N L      QL          
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 55  LSVLNLSYNNLVGKIP 70
           L  L L       ++ 
Sbjct: 428 LEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 1e-06
 Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 4/68 (5%)

Query: 2  GQFKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSV 57
             +    + +    LT      I S+      +  L+L  N L       +        
Sbjct: 24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 83

Query: 58 LNLSYNNL 65
            +   +L
Sbjct: 84 CKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 2e-04
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLSMNNLSGKIPSQLASL 52
           +    SL  L++S+N L  +               +E L L     S ++  +L +L
Sbjct: 393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 4e-04
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 22  PSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNL 65
                    +  L L+  ++S      + + L + + L  L+LS N L
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +     L  L    N ++   P    +L  +  + L  N +S   P  LA+ + L ++ L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 61  S 61
           +
Sbjct: 225 T 225

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 2  GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLS 61
           +  S   +N     LT ++P      K    L LS N L     + L     L+ LNL 
Sbjct: 7  SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 62 YNN 64
             
Sbjct: 64 RAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 8e-06
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 11  NMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
           ++++N LT         L+ +++L L  N+L   IP      + L    L  N  
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 3e-06
 Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 3/71 (4%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
               +        +N L       F        LD+S   +       L +L  L   + 
Sbjct: 173 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

Query: 61  SYNNLVGKIPT 71
              NL  K+PT
Sbjct: 233 --YNL-KKLPT 240

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 9e-06
 Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 9/97 (9%)

Query: 2  GQFKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLN 53
           +F S+   ++  +A+T     S+ +       ++ + LS N +  +    +   +AS  
Sbjct: 1  ARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 59

Query: 54 FLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLY 90
           L +   S            +       +      L+
Sbjct: 60 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 7e-05
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 24  SFGNLKQIESLDLSMNNLSGKIPSQLAS-----LNFLSVLNLSYNNLVGKIPTSTQLQS 77
           S      +++L L  N +       L +     +  L  L L+ N    +     +++ 
Sbjct: 268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 2e-04
 Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 7/58 (12%)

Query: 2   GQFKSLYALNMSHNALTGSIPSS-----FGNLKQIESLDLSMNNLS--GKIPSQLASL 52
            +   L  L + +N +      +        +  +  L+L+ N  S    +  ++  +
Sbjct: 270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 23 SSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNL 65
          + + N  +   LDL    +   I +  A+L+    ++ S N +
Sbjct: 12 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 2e-04
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 7  LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLV 66
             L++    +   I +    L Q +++D S N +  +       L  L  L ++ N + 
Sbjct: 20 DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNNRIC 76

Query: 67 GKIP 70
              
Sbjct: 77 RIGE 80

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-05
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 1   MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNL 60
           +   ++L  L ++ N       +       ++    S + +   +P +LA      +  L
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRL 276

Query: 61  SYNNLVG 67
           + N+L G
Sbjct: 277 AANDLQG 283

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-05
 Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 5  KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK-IPSQLASLNFLSVLNLSYN 63
          + + A     + +   +   F   + ++ +DLS + +    +   L+  + L  L+L   
Sbjct: 23 QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 64 NLVGKIPTS 72
           L   I  +
Sbjct: 82 RLSDPIVNT 90

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 4e-05
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 22/103 (21%)

Query: 1   MGQFKSLYALNMSHNALTGSIPS---------------------SFGNLKQIESLDLSMN 39
           + Q   +  L++SHN L    P+                        NL +++ L L  N
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 75

Query: 40  NL-SGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81
            L        L S   L +LNL  N+L  +     +L    P+
Sbjct: 76  RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 6e-04
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 10 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPS 47
          L+++H  LT  +      L  +  LDLS N L    P+
Sbjct: 3  LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA 38

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 3  QFKSLYALNMSHNALTGSIP------SSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLS 56
          + KS+ A       L G IP      ++   LK  + L LS NN+  KI S L+ +  L 
Sbjct: 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLR 73

Query: 57 VLN 59
          +L+
Sbjct: 74 ILS 76

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 5e-04
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 3  QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY 62
           F      N+   ++T ++  +   L  I+ +  + +++       +  L  ++ L L+ 
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 63 NNLVGKIPTS 72
          N L    P +
Sbjct: 78 NKLTDIKPLA 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.56
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.3
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.24
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.23
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.21
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.17
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.12
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.07
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.91
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.72
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.7
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.68
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.57
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.45
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.45
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.37
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.95
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.37
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.36
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.14
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.02
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.74
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.78
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	89.54

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.56  E-value=1.3e-15  Score=112.57  Aligned_cols=95  Identities=37%  Similarity=0.623  Sum_probs=86.4

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l   81 (163)
                      +.+++++.+++++|.+++.+ +.++.+++|+.|++++|+++|.+|..++++++|++|++++|+++|.+|....+++|..+
T Consensus       218 ~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l  296 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS  296 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred             cccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHH
Confidence            46788999999999999655 46889999999999999999999999999999999999999999999988889999999


Q ss_pred             cccCCCCCCCCCCCCCC
Q 031242           82 SYEGNKGLYGPPLTNES   98 (163)
Q Consensus        82 ~~~~n~~lc~~~~~~~c   98 (163)
                      ++.+|+.+||.|. ..|
T Consensus       297 ~l~~N~~l~g~pl-p~c  312 (313)
T d1ogqa_         297 AYANNKCLCGSPL-PAC  312 (313)
T ss_dssp             GTCSSSEEESTTS-SCC
T ss_pred             HhCCCccccCCCC-CCC
Confidence            9999999999875 355

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=1.4e-14  Score=100.17  Aligned_cols=90  Identities=27%  Similarity=0.366  Sum_probs=73.6

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      .++++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..|..+++|++|++++|+|++.++.. ..+.+++.
T Consensus        51 ~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  130 (192)
T d1w8aa_          51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             CCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccc
Confidence            45778888888888888777778888888888888888888666667888888888888888888877765 56778888


Q ss_pred             ccccCCCCCCC
Q 031242           81 TSYEGNKGLYG   91 (163)
Q Consensus        81 l~~~~n~~lc~   91 (163)
                      +++++|++.|.
T Consensus       131 l~L~~N~~~~~  141 (192)
T d1w8aa_         131 LNLASNPFNCN  141 (192)
T ss_dssp             EECTTCCBCCS
T ss_pred             ccccccccccc
Confidence            88888888775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.6e-14  Score=93.94  Aligned_cols=90  Identities=21%  Similarity=0.143  Sum_probs=78.3

Q ss_pred             CCCCCCCeEEccCC-CCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCc
Q 031242            2 GQFKSLYALNMSHN-ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~   80 (163)
                      ..+++|++|++++| .++...+..|.++++|+.|++++|+|++..|..|..+++|++|++++|+++..++.......+..
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~  107 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE  107 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccc
Confidence            46788999999866 58855557799999999999999999976688899999999999999999988777766668899


Q ss_pred             ccccCCCCCCC
Q 031242           81 TSYEGNKGLYG   91 (163)
Q Consensus        81 l~~~~n~~lc~   91 (163)
                      +++++|++.|.
T Consensus       108 L~L~~Np~~C~  118 (156)
T d2ifga3         108 LVLSGNPLHCS  118 (156)
T ss_dssp             EECCSSCCCCC
T ss_pred             cccCCCcccCC
Confidence            99999999885

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=1e-13  Score=89.50  Aligned_cols=84  Identities=26%  Similarity=0.316  Sum_probs=61.0

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC--CCcccCCCC
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFS   79 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~   79 (163)
                      .++++|++|++++|+++ .+|+.++.+++|+.|++++|.++ .+| .+..+++|+.+++++|+++....  ....+++++
T Consensus        17 ~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             ccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCC
Confidence            35667788888888887 67777777888888888888887 455 36777888888888888775542  235566777


Q ss_pred             cccccCCCC
Q 031242           80 PTSYEGNKG   88 (163)
Q Consensus        80 ~l~~~~n~~   88 (163)
                      .+++++|+.
T Consensus        94 ~L~l~~N~i  102 (124)
T d1dcea3          94 LLNLQGNSL  102 (124)
T ss_dssp             EEECTTSGG
T ss_pred             EEECCCCcC
Confidence            777777753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.3e-12  Score=94.28  Aligned_cols=90  Identities=23%  Similarity=0.166  Sum_probs=77.4

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l   81 (163)
                      ..+.+++.|++++|.++...+..+..+++++.+++++|++++..+..+..+++|+.|++++|+|+.+++....+..++.+
T Consensus       121 ~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA  200 (266)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred             ccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEE
Confidence            35677888888888888555566778999999999999999777777899999999999999999766667788999999


Q ss_pred             cccCCCCCCC
Q 031242           82 SYEGNKGLYG   91 (163)
Q Consensus        82 ~~~~n~~lc~   91 (163)
                      .+++||+.|.
T Consensus       201 ~L~~Np~~Cd  210 (266)
T d1p9ag_         201 FLHGNPWLCN  210 (266)
T ss_dssp             ECCSCCBCCS
T ss_pred             EecCCCCCCC
Confidence            9999999996

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=1.9e-12  Score=83.46  Aligned_cols=77  Identities=30%  Similarity=0.353  Sum_probs=69.0

Q ss_pred             CeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccccCCC
Q 031242            8 YALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNK   87 (163)
Q Consensus         8 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~~n~   87 (163)
                      |+|++++|+++ .++. +..+++|++|++++|.++ .+|..+..+++|+.|++++|.++.. |....+.+++.+++++|.
T Consensus         1 R~L~Ls~n~l~-~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCcc-cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-CccccccccCeEECCCCc
Confidence            68999999999 6664 899999999999999999 7898899999999999999999965 557788999999999886


Q ss_pred             C
Q 031242           88 G   88 (163)
Q Consensus        88 ~   88 (163)
                      .
T Consensus        77 i   77 (124)
T d1dcea3          77 L   77 (124)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.3e-12  Score=93.74  Aligned_cols=90  Identities=20%  Similarity=0.220  Sum_probs=71.6

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      ..+++|+.|++++|++++..+..+.++++|+.+++++|++++..|..|..+++|+.+++++|++.+.++.. ..+.++..
T Consensus       150 ~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCE
Confidence            45677888888888888666677788888888888888888777888888888888888888888777654 56778888


Q ss_pred             ccccCCCCCCC
Q 031242           81 TSYEGNKGLYG   91 (163)
Q Consensus        81 l~~~~n~~lc~   91 (163)
                      +++++|++.|.
T Consensus       230 L~l~~N~l~C~  240 (284)
T d1ozna_         230 LRLNDNPWVCD  240 (284)
T ss_dssp             EECCSSCEECS
T ss_pred             EEecCCCCCCC
Confidence            88888888875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.23  E-value=1.1e-11  Score=85.26  Aligned_cols=69  Identities=25%  Similarity=0.324  Sum_probs=61.4

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcC
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKI   69 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~   69 (163)
                      +..+++|+.|++++|++++..|..|.++++|++|+|++|+|++..|..|..+++|+++++++|.+....
T Consensus        74 ~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            356889999999999999766778999999999999999999777778999999999999999987544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.21  E-value=2.4e-12  Score=94.78  Aligned_cols=82  Identities=32%  Similarity=0.463  Sum_probs=54.8

Q ss_pred             CCCeEEccCCCCCC--CCCcccCCCcccceecccc-ccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242            6 SLYALNMSHNALTG--SIPSSFGNLKQIESLDLSM-NNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l   81 (163)
                      +++.|+|++|.++|  .+|++++++++|++|++++ |.++|.+|.+++++++|++|++++|++.+.++.. ..+..++.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            46667777777766  3667777777777777765 6777777777777777777777777777665543 344555555


Q ss_pred             cccCCC
Q 031242           82 SYEGNK   87 (163)
Q Consensus        82 ~~~~n~   87 (163)
                      ++..|.
T Consensus       131 ~l~~N~  136 (313)
T d1ogqa_         131 DFSYNA  136 (313)
T ss_dssp             ECCSSE
T ss_pred             cccccc
Confidence            555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.8e-12  Score=84.39  Aligned_cols=83  Identities=17%  Similarity=0.145  Sum_probs=68.1

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCcc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT   81 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l   81 (163)
                      ++.++++|+|++|+++ .+|..+..+++|+.|++++|.++ .++ .+..+++|++|++++|+++..++.. ..+..++.+
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4567889999999998 67776778899999999999998 554 4788899999999999998777654 467888888


Q ss_pred             cccCCCC
Q 031242           82 SYEGNKG   88 (163)
Q Consensus        82 ~~~~n~~   88 (163)
                      ++++|..
T Consensus        93 ~L~~N~i   99 (162)
T d1a9na_          93 ILTNNSL   99 (162)
T ss_dssp             ECCSCCC
T ss_pred             eeccccc
Confidence            8888853

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.6e-11  Score=82.54  Aligned_cols=84  Identities=20%  Similarity=0.186  Sum_probs=69.8

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC--CCcccCCCCc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSP   80 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~~   80 (163)
                      .+++|+.|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|+.|++++|++.....  ....+++|+.
T Consensus        39 ~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~  116 (162)
T d1a9na_          39 TLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY  116 (162)
T ss_dssp             GTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred             ccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccch
Confidence            4788999999999999 664 58899999999999999994444456779999999999999986532  3467889999


Q ss_pred             ccccCCCC
Q 031242           81 TSYEGNKG   88 (163)
Q Consensus        81 l~~~~n~~   88 (163)
                      +++.+|+.
T Consensus       117 L~l~~N~i  124 (162)
T d1a9na_         117 LCILRNPV  124 (162)
T ss_dssp             EECCSSGG
T ss_pred             hhcCCCcc
Confidence            99999964

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=1.2e-10  Score=85.11  Aligned_cols=63  Identities=29%  Similarity=0.467  Sum_probs=30.7

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccC
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVG   67 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~   67 (163)
                      ++.+++|++++|.+++..+..+.++++|+.|++++|+++ .+|..+..+++|++|++++|+|+.
T Consensus       194 ~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             cccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence            344444555555554333444444555555555555554 444444455555555555555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.91  E-value=5.3e-10  Score=83.42  Aligned_cols=79  Identities=20%  Similarity=0.332  Sum_probs=54.8

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      .+++++.|++++|++++ ++ .+..+++|+.|++++|+++ .++ .+..+++|++|++++|++++.+| ...+.+|+.++
T Consensus       305 ~~~~l~~L~ls~n~l~~-l~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~  379 (384)
T d2omza2         305 NLKNLTYLTLYFNNISD-IS-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLG  379 (384)
T ss_dssp             GCTTCSEEECCSSCCSC-CG-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEE
T ss_pred             hhcccCeEECCCCCCCC-Cc-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEee
Confidence            35667777777777774 33 2667777788888877777 444 46777778888888777776654 55566777777


Q ss_pred             ccCC
Q 031242           83 YEGN   86 (163)
Q Consensus        83 ~~~n   86 (163)
                      ++.|
T Consensus       380 L~~N  383 (384)
T d2omza2         380 LNDQ  383 (384)
T ss_dssp             CCCE
T ss_pred             CCCC
Confidence            6655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.7e-10  Score=73.91  Aligned_cols=65  Identities=25%  Similarity=0.237  Sum_probs=57.0

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCcccc
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLV   66 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~   66 (163)
                      |.++++|+.|++++|+++...|..|..+++|++|++++|+++ .+|.......+|+.|++++|.+.
T Consensus        52 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             hccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            467899999999999999666788999999999999999999 77766555668999999999885

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.5e-09  Score=78.51  Aligned_cols=87  Identities=21%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      .++++|++|++++|.+....+..+....+|+.+++++|.+++..+..+..+++|+.|++++|++++.++.. ..+.++..
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~  181 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR  181 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccch
Confidence            45677777777777777555566667777777777777777444556667777777777777777666544 45666666


Q ss_pred             ccccCCCC
Q 031242           81 TSYEGNKG   88 (163)
Q Consensus        81 l~~~~n~~   88 (163)
                      +.+.+|..
T Consensus       182 l~l~~N~l  189 (284)
T d1ozna_         182 LLLHQNRV  189 (284)
T ss_dssp             EECCSSCC
T ss_pred             hhhhhccc
Confidence            66666643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.87  E-value=1.6e-09  Score=78.93  Aligned_cols=84  Identities=25%  Similarity=0.235  Sum_probs=72.9

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~   83 (163)
                      +++|+.|++++|..++..+..+.+++.++.|++++|.+++..+..+..+++|++|++++|.++..++....+++|+.+++
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred             CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEEC
Confidence            56788899999988878888889999999999999999977778888899999999999999877666677889999999


Q ss_pred             cCCC
Q 031242           84 EGNK   87 (163)
Q Consensus        84 ~~n~   87 (163)
                      ++|.
T Consensus       250 s~N~  253 (305)
T d1xkua_         250 HNNN  253 (305)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            8885

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.6e-09  Score=74.43  Aligned_cols=84  Identities=31%  Similarity=0.319  Sum_probs=50.4

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCC-cccCCCCc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~   80 (163)
                      +.+++|+.|++++|+++ ..+..+.++++|+.|++++|.+....+..+..+.+++.+++++|.+...++.. ..+..+..
T Consensus        74 ~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~  152 (266)
T d1p9ag_          74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (266)
T ss_dssp             SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchh
Confidence            45677888888888877 55666777777777777777666444444555555555555555555444433 23444444


Q ss_pred             ccccCC
Q 031242           81 TSYEGN   86 (163)
Q Consensus        81 l~~~~n   86 (163)
                      +++++|
T Consensus       153 l~l~~N  158 (266)
T d1p9ag_         153 LSLANN  158 (266)
T ss_dssp             EECTTS
T ss_pred             cccccc
Confidence            444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.72  E-value=7.6e-09  Score=72.35  Aligned_cols=76  Identities=21%  Similarity=0.314  Sum_probs=43.8

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      .+++|+.|++++|.++. .+ .++++++|+.|++++|+++ .+|. +..+++|+.|++++|++++..| ...+.+|+.++
T Consensus       149 ~~~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~Ls~n~l~-~l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~  223 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQVSD-LT-PLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVT  223 (227)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEE
T ss_pred             ccccccccccccccccc-ch-hhcccccceecccCCCccC-CChh-hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEE
Confidence            34556666666666652 22 2566666666666666666 3433 5566666666666666665432 34455555544


Q ss_pred             c
Q 031242           83 Y   83 (163)
Q Consensus        83 ~   83 (163)
                      +
T Consensus       224 l  224 (227)
T d1h6ua2         224 L  224 (227)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.72  E-value=1.2e-08  Score=70.03  Aligned_cols=78  Identities=26%  Similarity=0.353  Sum_probs=39.0

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~   83 (163)
                      +++|++|++++|++++ +++ ++++++|++|++++|.+. .++ .+..+++|+.+++++|...... ....+..++.+.+
T Consensus        61 l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l  135 (199)
T d2omxa2          61 LNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLEL  135 (199)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred             CCCcCcCccccccccC-ccc-ccCCcccccccccccccc-ccc-cccccccccccccccccccccc-ccchhhhhHHhhh
Confidence            4555555555555552 222 555555555555555554 333 2445555555555555544322 2334455555555


Q ss_pred             cCC
Q 031242           84 EGN   86 (163)
Q Consensus        84 ~~n   86 (163)
                      ++|
T Consensus       136 ~~n  138 (199)
T d2omxa2         136 SSN  138 (199)
T ss_dssp             CSS
T ss_pred             hhh
Confidence            554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.70  E-value=3.1e-11  Score=83.61  Aligned_cols=80  Identities=24%  Similarity=0.292  Sum_probs=46.4

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS   82 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~   82 (163)
                      .+++|+.|+|++|+++ .++ .+..+++|+.|++++|.++ .+|.....+++|+.|++++|+++.. +....+.+++.++
T Consensus        46 ~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~  121 (198)
T d1m9la_          46 TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLY  121 (198)
T ss_dssp             HTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH-HHHHHHHHSSEEE
T ss_pred             cccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc-ccccccccccccc
Confidence            3566777777777776 454 3666777777777777776 5554444444566666666655532 2233444445555


Q ss_pred             ccCC
Q 031242           83 YEGN   86 (163)
Q Consensus        83 ~~~n   86 (163)
                      +++|
T Consensus       122 L~~N  125 (198)
T d1m9la_         122 MSNN  125 (198)
T ss_dssp             ESEE
T ss_pred             cccc
Confidence            5444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.68  E-value=5e-11  Score=82.53  Aligned_cols=83  Identities=20%  Similarity=0.226  Sum_probs=61.8

Q ss_pred             CCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCC--CCcccCCCCc
Q 031242            3 QFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSP   80 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~~   80 (163)
                      .+++|+.|++++|.++ .+|.....+++|+.|++++|.++ .++ .+..+++|+.|++++|+++....  ....+++|+.
T Consensus        68 ~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~  144 (198)
T d1m9la_          68 GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED  144 (198)
T ss_dssp             HHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred             CCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccccccccccchhccccccccccCCCccce
Confidence            4677888888888888 67765556677888888888887 443 46778888888888888875432  3356778888


Q ss_pred             ccccCCCC
Q 031242           81 TSYEGNKG   88 (163)
Q Consensus        81 l~~~~n~~   88 (163)
                      +++.+|+.
T Consensus       145 L~L~~N~l  152 (198)
T d1m9la_         145 LLLAGNPL  152 (198)
T ss_dssp             EEECSSHH
T ss_pred             eecCCCcc
Confidence            88888863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.67  E-value=1.5e-08  Score=75.35  Aligned_cols=79  Identities=19%  Similarity=0.307  Sum_probs=61.4

Q ss_pred             CCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcccc
Q 031242            4 FKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY   83 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~   83 (163)
                      +.+|++|+++++.++ .+ +++..+++|++|++++|+++ .+|. +.++++|+.|++++|++.+..+ ...+.+|+.+.+
T Consensus        43 l~~l~~L~l~~~~I~-~l-~gl~~L~nL~~L~Ls~N~l~-~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~  117 (384)
T d2omza2          43 LDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  117 (384)
T ss_dssp             HTTCCEEECCSSCCC-CC-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             hCCCCEEECCCCCCC-Cc-cccccCCCCCEEeCcCCcCC-CCcc-ccCCcccccccccccccccccc-cccccccccccc
Confidence            467889999999888 45 45778889999999999998 4553 7888999999999999886543 556777777776


Q ss_pred             cCCC
Q 031242           84 EGNK   87 (163)
Q Consensus        84 ~~n~   87 (163)
                      .+|.
T Consensus       118 ~~~~  121 (384)
T d2omza2         118 FNNQ  121 (384)
T ss_dssp             CSSC
T ss_pred             cccc
Confidence            6553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.67  E-value=1.7e-08  Score=69.84  Aligned_cols=77  Identities=25%  Similarity=0.284  Sum_probs=38.9

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCccccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE   84 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~~~   84 (163)
                      .+|+.|++++|.++ .++ .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++++. |....++.++.+.+.
T Consensus        46 ~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          46 NSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE  120 (210)
T ss_dssp             HTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCG-GGGTTCTTCCEEECT
T ss_pred             cCccEEECcCCCCC-Cch-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccccc-ccccccccccccccc
Confidence            34555555555555 222 24455555555665555552 33 234555555555555555542 233444455555554


Q ss_pred             CC
Q 031242           85 GN   86 (163)
Q Consensus        85 ~n   86 (163)
                      +|
T Consensus       121 ~~  122 (210)
T d1h6ta2         121 HN  122 (210)
T ss_dssp             TS
T ss_pred             cc
Confidence            44

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.66  E-value=2.3e-08  Score=68.60  Aligned_cols=81  Identities=28%  Similarity=0.410  Sum_probs=66.1

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l   81 (163)
                      .++++|+.|++++|.... + ..+..+++|+.|++++|++. .++ .+..+++|+.+++.+|++++.. ....+++|+.+
T Consensus       103 ~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L  177 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERL  177 (199)
T ss_dssp             TTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEE
T ss_pred             cccccccccccccccccc-c-cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCc-cccCCCCCCEE
Confidence            567889999999998873 3 34778999999999999987 454 5788899999999999998754 45678889999


Q ss_pred             cccCCC
Q 031242           82 SYEGNK   87 (163)
Q Consensus        82 ~~~~n~   87 (163)
                      ++++|.
T Consensus       178 ~ls~N~  183 (199)
T d2omxa2         178 DISSNK  183 (199)
T ss_dssp             ECCSSC
T ss_pred             ECCCCC
Confidence            998885

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=3.8e-08  Score=68.08  Aligned_cols=81  Identities=26%  Similarity=0.308  Sum_probs=66.0

Q ss_pred             CCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCccccCcCCCCcccCCCCcc
Q 031242            2 GQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT   81 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l   81 (163)
                      ..+++|++|++++|+++ .+++ ++.+++|+.|++++|+++ .+| .+..+++|+.+++++|.+.. ++....+..+..+
T Consensus        65 ~~l~~L~~L~L~~n~i~-~l~~-~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~l~~l  139 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESL  139 (210)
T ss_dssp             GGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEE
T ss_pred             hhCCCCCEEeCCCcccc-Cccc-cccCcccccccccccccc-ccc-cccccccccccccccccccc-ccccccccccccc
Confidence            45889999999999999 4553 688999999999999998 566 57889999999999998874 3445566777777


Q ss_pred             cccCCC
Q 031242           82 SYEGNK   87 (163)
Q Consensus        82 ~~~~n~   87 (163)
                      .+.+|.
T Consensus       140 ~~~~n~  145 (210)
T d1h6ta2         140 YLGNNK  145 (210)
T ss_dssp             ECCSSC
T ss_pred             cccccc
Confidence            776664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=4.4e-08  Score=65.20  Aligned_cols=65  Identities=26%  Similarity=0.207  Sum_probs=35.8

Q ss_pred             CCCCCeEEccCCCCCCC--CCcccCCCcccceeccccccCCCcCch-hhcCCCCcccccccCccccCcC
Q 031242            4 FKSLYALNMSHNALTGS--IPSSFGNLKQIESLDLSMNNLSGKIPS-QLASLNFLSVLNLSYNNLVGKI   69 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~ls~N~l~g~~p~-~~~~l~~L~~L~l~~N~l~~~~   69 (163)
                      +++|++|+|++|+++..  ++..+..+++|+.|++++|.++ .+++ ......+|+.+++++|++....
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCc
Confidence            45666666666666622  1233445666666666666666 3332 2233345666666666665443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.45  E-value=7.9e-08  Score=66.98  Aligned_cols=58  Identities=21%  Similarity=0.387  Sum_probs=50.3

Q ss_pred             CCCCCCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccC
Q 031242            1 MGQFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSY   62 (163)
Q Consensus         1 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~   62 (163)
                      ++++++|+.|++++|+++ .+|. +.++++|++|++++|+++ .+|. +.++++|+.|++++
T Consensus       169 l~~l~~L~~L~Ls~n~l~-~l~~-l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCCccC-CChh-hcCCCCCCEEECcCCcCC-CCcc-cccCCCCCEEEeeC
Confidence            357899999999999999 5554 889999999999999999 5663 78999999999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.37  E-value=2.9e-07  Score=67.12  Aligned_cols=54  Identities=35%  Similarity=0.483  Sum_probs=27.5

Q ss_pred             CCCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCcccc
Q 031242            5 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYNNLV   66 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~   66 (163)
                      ++|++|++++|+++ .+|..   +++|+.|++++|+++ .+|..   +.+|+.|++++|+++
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence            45555555555555 44432   344555555555555 44432   334555555555555

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.29  E-value=1.4e-06  Score=63.29  Aligned_cols=76  Identities=26%  Similarity=0.325  Sum_probs=39.7

Q ss_pred             CCCeEEccCCCCCCCCCcccCCCcccceeccccccCCCcCchhhcCC-----------------CCcccccccCccccCc
Q 031242            6 SLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPSQLASL-----------------NFLSVLNLSYNNLVGK   68 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l-----------------~~L~~L~l~~N~l~~~   68 (163)
                      ++++|||++|.++ .+|+.   +++|++|++++|+|+ .+|..++++                 +.|++|++++|.+...
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~~l  113 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL  113 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccchhhhhhhhhhhcccchhhhhccccccccccccccccc
Confidence            3455555555555 45532   234555555555555 445432211                 2466666666666643


Q ss_pred             CCCCcccCCCCcccccCCC
Q 031242           69 IPTSTQLQSFSPTSYEGNK   87 (163)
Q Consensus        69 ~p~~~~l~~l~~l~~~~n~   87 (163)
                       |....+..++.+++.+|.
T Consensus       114 -p~~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         114 -PELQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             -CCCTTCTTCCEEECCSSC
T ss_pred             -cchhhhccceeecccccc
Confidence             334456666666665543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=5.6e-07  Score=62.86  Aligned_cols=81  Identities=19%  Similarity=0.283  Sum_probs=54.6

Q ss_pred             CCCCeEEccCCCCCCCCC-cccCCCcccceeccccccCCCcCc-hhhcCCCCcccccccC-ccccCcCCCC-cccCCCCc
Q 031242            5 KSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIP-SQLASLNFLSVLNLSY-NNLVGKIPTS-TQLQSFSP   80 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~L~l~~-N~l~~~~p~~-~~l~~l~~   80 (163)
                      +++++|++++|+++ .+| ..|.++++|++|++++|.+...+| ..|..++.++.+++.. |.+....+.. ..+.+++.
T Consensus        29 ~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            36788888888888 444 457888888888888887765443 3466677777776653 5565555543 45666666


Q ss_pred             ccccCC
Q 031242           81 TSYEGN   86 (163)
Q Consensus        81 l~~~~n   86 (163)
                      +.+.+|
T Consensus       108 l~l~~~  113 (242)
T d1xwdc1         108 LLISNT  113 (242)
T ss_dssp             EEEESC
T ss_pred             cccchh
Confidence            666655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.3e-08  Score=65.26  Aligned_cols=64  Identities=27%  Similarity=0.215  Sum_probs=48.8

Q ss_pred             CCcccceeccccccCCCc--CchhhcCCCCcccccccCccccCcCCCC-cccCCCCcccccCCCCCC
Q 031242           27 NLKQIESLDLSMNNLSGK--IPSQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEGNKGLY   90 (163)
Q Consensus        27 ~l~~L~~L~ls~N~l~g~--~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~~~~n~~lc   90 (163)
                      .+++|++|++++|+++..  ++..+..+++|+.|++++|.++...+-. .....++.+.+.+|+..+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            578899999999999843  2345778999999999999999655421 234567888899998644

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=6.9e-06  Score=57.09  Aligned_cols=75  Identities=19%  Similarity=0.194  Sum_probs=47.7

Q ss_pred             CCCeEEccCCCCCCCCCcccCCCccccee-ccccccCCCcCch-hhcCCCCcccccccCccccCcCCCC-cccCCCCccc
Q 031242            6 SLYALNMSHNALTGSIPSSFGNLKQIESL-DLSMNNLSGKIPS-QLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTS   82 (163)
Q Consensus         6 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~ls~N~l~g~~p~-~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~   82 (163)
                      .++.|++++|+++ .++.......+++.+ ++++|+++ .+|. .|..+++|++|++++|+++..++.. ..+..|+.++
T Consensus       154 ~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         154 ESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             SCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred             cceeeeccccccc-ccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCc
Confidence            5667788888888 555544445555444 56777787 5554 4677888888888888888655432 3344444333

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=3.2e-06  Score=60.75  Aligned_cols=82  Identities=18%  Similarity=0.143  Sum_probs=49.6

Q ss_pred             CCCCCeEEccCCCCCCC-CCcccCCCcccceeccccccCCCcCchhhcCCCCcccccccCc-cccCc-CCC-CcccCCCC
Q 031242            4 FKSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGKIPSQLASLNFLSVLNLSYN-NLVGK-IPT-STQLQSFS   79 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N-~l~~~-~p~-~~~l~~l~   79 (163)
                      ..+|+.||++++.++.. ++..+..+++|++|+++++.++...+..+.++++|+.|+++++ .++.. ... ...++.|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            44677777777766532 3444566777777777777776666666777777777777763 34321 011 12345566


Q ss_pred             cccccC
Q 031242           80 PTSYEG   85 (163)
Q Consensus        80 ~l~~~~   85 (163)
                      .+++++
T Consensus       125 ~L~ls~  130 (284)
T d2astb2         125 ELNLSW  130 (284)
T ss_dssp             EEECCC
T ss_pred             cccccc
Confidence            666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=6.8e-05  Score=53.50  Aligned_cols=82  Identities=20%  Similarity=0.246  Sum_probs=44.9

Q ss_pred             CCCCeEEccCC--CCCC-CCCcccCCCcccceeccccc-cCCCcCchhhcCCCCcccccccCc-cccCcCC-CCcccCCC
Q 031242            5 KSLYALNMSHN--ALTG-SIPSSFGNLKQIESLDLSMN-NLSGKIPSQLASLNFLSVLNLSYN-NLVGKIP-TSTQLQSF   78 (163)
Q Consensus         5 ~~L~~L~Ls~N--~l~~-~~p~~~~~l~~L~~L~ls~N-~l~g~~p~~~~~l~~L~~L~l~~N-~l~~~~p-~~~~l~~l   78 (163)
                      ++|+.|++++.  .++. .+......+++|++|+++++ .+++.....+.++++|++|+++++ .++.... ...++++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            56677777653  2331 12222344666777777664 455555566666777777777763 4443222 22445566


Q ss_pred             CcccccCC
Q 031242           79 SPTSYEGN   86 (163)
Q Consensus        79 ~~l~~~~n   86 (163)
                      +.+++.++
T Consensus       228 ~~L~l~~~  235 (284)
T d2astb2         228 KTLQVFGI  235 (284)
T ss_dssp             CEEECTTS
T ss_pred             CEEeeeCC
Confidence            66666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=4.1e-06  Score=62.75  Aligned_cols=84  Identities=19%  Similarity=0.197  Sum_probs=46.9

Q ss_pred             CCCCCeEEccCCCCCC----CCCcccCCCcccceeccccccCCCc----Cchhhc-CCCCcccccccCccccCcC----C
Q 031242            4 FKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGK----IPSQLA-SLNFLSVLNLSYNNLVGKI----P   70 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~-~l~~L~~L~l~~N~l~~~~----p   70 (163)
                      ++++++|+|++|.++.    .+...+...++|+.||+++|.++..    +...+. ...+|+.|++++|+++...    +
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~  105 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  105 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccccc
Confidence            4567777777777652    2233455667777777777766411    111111 1236777777777765321    1


Q ss_pred             -CCcccCCCCcccccCCC
Q 031242           71 -TSTQLQSFSPTSYEGNK   87 (163)
Q Consensus        71 -~~~~l~~l~~l~~~~n~   87 (163)
                       ....+.+++.+++.+|.
T Consensus       106 ~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         106 STLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHTTSCTTCCEEECCSSB
T ss_pred             chhhcccccccccccccc
Confidence             12345566666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.14  E-value=1e-05  Score=59.19  Aligned_cols=63  Identities=21%  Similarity=0.242  Sum_probs=35.6

Q ss_pred             CCCCCeEEccCCCCCCC-----CCcccCCCcccceeccccccCCCc----CchhhcCCCCcccccccCcccc
Q 031242            4 FKSLYALNMSHNALTGS-----IPSSFGNLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLV   66 (163)
Q Consensus         4 l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~   66 (163)
                      .+.|+.|++++|.++..     +...+...++|+.|++++|.++..    +...+...++|+.|++++|.+.
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            45566677766666521     223345566666677766665421    2233455666666666666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=4.5e-05  Score=56.88  Aligned_cols=65  Identities=29%  Similarity=0.294  Sum_probs=49.2

Q ss_pred             CCCCCCeEEccCCCCCC----CCCcccC-CCcccceeccccccCCCc----CchhhcCCCCcccccccCccccC
Q 031242            3 QFKSLYALNMSHNALTG----SIPSSFG-NLKQIESLDLSMNNLSGK----IPSQLASLNFLSVLNLSYNNLVG   67 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~----~~p~~~~-~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~~   67 (163)
                      .+++|+.|||++|.++.    .+...+. ...+|+.|++++|.++..    ++..+...++|+.|++++|.+..
T Consensus        53 ~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          53 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             cCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            57889999999999862    1222332 235799999999998743    34567788999999999998763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.91  E-value=4.7e-05  Score=55.59  Aligned_cols=62  Identities=19%  Similarity=0.283  Sum_probs=29.0

Q ss_pred             CCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCCc-----CchhhcCCCCcccccccCcccc
Q 031242            5 KSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGK-----IPSQLASLNFLSVLNLSYNNLV   66 (163)
Q Consensus         5 ~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~-----~p~~~~~l~~L~~L~l~~N~l~   66 (163)
                      +.|+.+++++|.++..    +...+...+.|+.|++++|.++..     +...+...++|+.|++++|.+.
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccc
Confidence            4455555555555411    112233345555666665555421     1122344555556666655543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.06  E-value=0.0004  Score=45.54  Aligned_cols=85  Identities=19%  Similarity=0.189  Sum_probs=57.6

Q ss_pred             CCCCCCeEEccCC-CCCCC----CCcccCCCcccceeccccccCCCcC----chhhcCCCCcccccccCccccCcCC---
Q 031242            3 QFKSLYALNMSHN-ALTGS----IPSSFGNLKQIESLDLSMNNLSGKI----PSQLASLNFLSVLNLSYNNLVGKIP---   70 (163)
Q Consensus         3 ~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~~----p~~~~~l~~L~~L~l~~N~l~~~~p---   70 (163)
                      +.++|++|+|+++ .++..    +-..+...++|+.|++++|.+....    -..+...+.|+.|++++|.+....-   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578999999974 46521    2234667788999999999886321    2234556889999999998874221   


Q ss_pred             --CCcccCCCCcccccCCC
Q 031242           71 --TSTQLQSFSPTSYEGNK   87 (163)
Q Consensus        71 --~~~~l~~l~~l~~~~n~   87 (163)
                        ......+++.+++.+|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence              12334667777777663

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.74  E-value=0.0011  Score=43.27  Aligned_cols=65  Identities=8%  Similarity=0.089  Sum_probs=48.0

Q ss_pred             CCCCCCeEEccCCCCCC----CCCcccCCCcccceeccccccCCCcCc----hhhcCCCCcccccccCccccC
Q 031242            3 QFKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGKIP----SQLASLNFLSVLNLSYNNLVG   67 (163)
Q Consensus         3 ~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~~p----~~~~~l~~L~~L~l~~N~l~~   67 (163)
                      ..+.|+.|++++|.++.    .+...+...+.|+.|++++|.++..--    ..+..-++|+.|++++|.+..
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCC
Confidence            45789999999999873    222344556889999999999874321    235566889999999987653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.78  E-value=0.026  Score=36.23  Aligned_cols=64  Identities=13%  Similarity=0.129  Sum_probs=45.4

Q ss_pred             CCCCCCeEEccC-CCCCCC----CCcccCCCcccceeccccccCCCcCc----hhhcCCCCcccccccCcccc
Q 031242            3 QFKSLYALNMSH-NALTGS----IPSSFGNLKQIESLDLSMNNLSGKIP----SQLASLNFLSVLNLSYNNLV   66 (163)
Q Consensus         3 ~l~~L~~L~Ls~-N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~~p----~~~~~l~~L~~L~l~~N~l~   66 (163)
                      +.+.|++|++++ +.++..    +-..+...++|+.|++++|.++...-    ..+...++++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            457899999987 456521    22345678899999999998864321    22455688999999988875

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.54  E-value=0.026  Score=36.17  Aligned_cols=65  Identities=15%  Similarity=0.102  Sum_probs=44.7

Q ss_pred             CCCCCCCeEEccCCCCCCC----CCcccCCCcccceeccccccCCCcC----chhhcCCCCcccccc--cCcccc
Q 031242            2 GQFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKI----PSQLASLNFLSVLNL--SYNNLV   66 (163)
Q Consensus         2 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~~----p~~~~~l~~L~~L~l--~~N~l~   66 (163)
                      ...++|++|++++|.++..    +-..+...++++.+++++|.+...-    -..+...++|+.+++  ++|.+.
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCc
Confidence            3567899999999998743    2234456788999999999886331    234566778876444  556654