Citrus Sinensis ID: 031248

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MMLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCLHIIIVNSL
Secondary Structure (PSIPRED)
ccccccEEEEEccccHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHHHccccccccEEEEccccccccccEEEEEEEccccEEEccEEEEEEEEcccccccccEEEEEEcccccHHccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccEcEEEEEcccccHHHHHHHHHHccccccccccccccccccccccHHHcccccccEEccEEEEEcccHHHHHHHHHHHHHHHHcccccEEEccccccccccEEEEEEEEEEHHEHcccEEEEEEccccccccccEEEEEccccccHHHHHHHEEEEEEccc
Coil and Loop (DISEMBL)
MMLTGMVFlswgrptpqeqkacidksgvfnydtkykgatakpvaclkedqglskdgflLNHARVLVGSGLETYEKGKTALKTWRHfglnwafvdpktpiqngvKFCVCVkeflpwvtlpLQIVYVNESIrkkktaasfgfgsgtlqGHLLVSTCLHIIIVNSL
Flexible Loop (DISEMBL)
MMLTGMVFlswgrptpqEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCLHIIIVNSL
Low Complexity Region (SEG)
MMLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCLHIIIVNSL
Disordered region (IsUnstruct)
****GMVFLSWGRP****QKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCLHIIIV***
Disordered Region (DISOPRED)
***TGMVFLSWGRPTPQEQ**CIDKSGVFNYDTKYKGATA***********LSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCLHIIIVNSL
Disordered Region (DISEMBL)
MMLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCLHIIIVNSL
Disordered Region (DISPRO)
*MLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCLHIIIVNSL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCLHIIIVNSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q8GXB1	205	UPF0548 protein At2g17695	yes	no	0.895	0.712	0.650	6e-58
Q86JL6	216	UPF0548 protein OS=Dictyo	yes	no	0.570	0.430	0.294	6e-07

>sp|Q8GXB1|U548_ARATH UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2 SV=1

 Score =  223 bits (567), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 95/146 (65%), Positives = 121/146 (82%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSWGRP+ ++Q+  I+K+G FNYD KY+G +++ +A LKED  + KDGFL+NHARVL
Sbjct: 1   MVFLSWGRPSSEQQQQVINKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG E+YEKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct: 61  VGSGRESYEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLV 151
           +ES + +K  A FG+GSGTLQGHLL 
Sbjct: 121 DESRKSRKGPAHFGYGSGTLQGHLLA 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q86JL6|U548_DICDI UPF0548 protein OS=Dictyostelium discoideum GN=DDB_G0271742 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 56  GFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWA-FVDPKTPIQNGVKFCVCVKEFLP 114
            F ++  ++ +G+G+E ++K   ALK W+HF L+W  F    TPI  G    +  K+   
Sbjct: 49  NFDVDQVKIQLGTGVECFQKAVAALKQWKHFDLDWVDFYFKNTPIAVGETVGILSKQVGF 108

Query: 115 WVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHL 149
           W+    +I Y+ +   ++  +  FG+  GTL+ H+
Sbjct: 109 WILSFARINYLYDG-DQEDGSIKFGYSYGTLKDHV 142

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
351727507	207	uncharacterized protein LOC100527004 [Gl	0.895	0.705	0.773	6e-65
357517863	232	hypothetical protein MTR_8g074720 [Medic	0.932	0.655	0.710	1e-62
217073422	207	unknown [Medicago truncatula] gi|3885012	0.895	0.705	0.732	1e-61
255561315	205	conserved hypothetical protein [Ricinus	0.895	0.712	0.712	4e-58
449434104	208	PREDICTED: UPF0548 protein At2g17695-lik	0.895	0.701	0.700	6e-58
418731084	203	hypothetical protein [Solanum tuberosum]	0.889	0.714	0.705	3e-57
30680073	205	uncharacterized protein [Arabidopsis tha	0.895	0.712	0.650	3e-56
297742205	229	unnamed protein product [Vitis vinifera]	0.895	0.637	0.671	8e-56
225431362	204	PREDICTED: UPF0548 protein At2g17695 [Vi	0.895	0.715	0.671	1e-55
224133942	202	predicted protein [Populus trichocarpa]	0.877	0.707	0.712	1e-55

>gi|351727507|ref|NP_001237163.1| uncharacterized protein LOC100527004 [Glycine max] gi|255631350|gb|ACU16042.1| unknown [Glycine max]

 Score =  251 bits (642), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 128/146 (87%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           M+FLSWGRP+PQ+QK CI+KSG FNYD KYKGATAK VA LK D+GLSKDGFLLN ARVL
Sbjct: 1   MLFLSWGRPSPQDQKTCINKSGTFNYDDKYKGATAKSVASLKADEGLSKDGFLLNEARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG+ET+EKGK+AL++WRHFGLNWAFVDPKTP+Q GVKFCVCVKEF PW+ +PLQ+VYV
Sbjct: 61  VGSGIETFEKGKSALRSWRHFGLNWAFVDPKTPVQQGVKFCVCVKEFFPWLMMPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLV 151
           NE+   K   ASFGFGSGTL GHLL 
Sbjct: 121 NETGTAKYRTASFGFGSGTLHGHLLA 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517863|ref|XP_003629220.1| hypothetical protein MTR_8g074720 [Medicago truncatula] gi|355523242|gb|AET03696.1| hypothetical protein MTR_8g074720 [Medicago truncatula]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 130/152 (85%)

Query: 2   MLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNH 61
           ++  MVFLSW RPT Q+QK CI+KSG  NYD KYKGA+AK ++ LKED+GL  DGFLLN+
Sbjct: 20  IIVRMVFLSWVRPTAQDQKNCINKSGTLNYDDKYKGASAKSLSSLKEDKGLPNDGFLLNN 79

Query: 62  ARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQ 121
           ARVLVGSG+ET+EKGK+AL++WRHFG+NWAFVDPKTP++ G KFCVCVKEFLPW+ +PLQ
Sbjct: 80  ARVLVGSGVETFEKGKSALRSWRHFGMNWAFVDPKTPVEQGAKFCVCVKEFLPWLMMPLQ 139

Query: 122 IVYVNESIRKKKTAASFGFGSGTLQGHLLVST 153
           +VYVNE+   K   ASFGFGSGTLQGHLLV+ 
Sbjct: 140 VVYVNETSTTKNRGASFGFGSGTLQGHLLVAA 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073422|gb|ACJ85070.1| unknown [Medicago truncatula] gi|388501276|gb|AFK38704.1| unknown [Medicago truncatula]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 107/146 (73%), Positives = 126/146 (86%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSW RPT Q+QK CI+KSG  NYD KYKGA+AK ++ LKED+GL  DGFLLN+ARVL
Sbjct: 1   MVFLSWVRPTAQDQKNCINKSGTLNYDDKYKGASAKSLSSLKEDKGLPNDGFLLNNARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG+ET+EKGK+AL++WRHFG+NWAFVDPKTP++ G KFCVCVKEFLPW+ +PLQ+VYV
Sbjct: 61  VGSGVETFEKGKSALRSWRHFGMNWAFVDPKTPVEQGAKFCVCVKEFLPWLMMPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLV 151
           NE+   K   ASFGFGSGTLQGHLL 
Sbjct: 121 NETSTTKNRGASFGFGSGTLQGHLLA 146

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561315|ref|XP_002521668.1| conserved hypothetical protein [Ricinus communis] gi|223539059|gb|EEF40655.1| conserved hypothetical protein [Ricinus communis]

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 121/146 (82%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSW RP+P++QK  + KS  FNYD KYKGATAKPV  LKED  L++DGF +NHARVL
Sbjct: 1   MVFLSWTRPSPRQQKDFLTKSSAFNYDPKYKGATAKPVTSLKEDSELTRDGFFVNHARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           +GSGL+T++KGK+AL+ WRHFGLNWAFVDPKT IQ+GVKFCVC KEFLPWV +PLQ++YV
Sbjct: 61  LGSGLDTFDKGKSALQNWRHFGLNWAFVDPKTAIQSGVKFCVCYKEFLPWVMMPLQMIYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLV 151
            ES   KK  ASF FG GTLQGHLL 
Sbjct: 121 KESRNAKKGMASFCFGGGTLQGHLLA 146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434104|ref|XP_004134836.1| PREDICTED: UPF0548 protein At2g17695-like [Cucumis sativus] gi|449491283|ref|XP_004158849.1| PREDICTED: UPF0548 protein At2g17695-like [Cucumis sativus]

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 103/147 (70%), Positives = 122/147 (82%), Gaps = 1/147 (0%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQG-LSKDGFLLNHARV 64
           MVFL W RP+PQEQKACI+++G FNY++K++GATA P +CL+ED+G +S++GFLLNHAR+
Sbjct: 1   MVFLCWSRPSPQEQKACIERAGSFNYNSKFRGATANPSSCLQEDKGGISQEGFLLNHARI 60

Query: 65  LVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVY 124
           LVGSG+ TYEKGK AL+ WRHFGLNWAFVD  TP+  GVKFCVC KEFLPWV LPLQIVY
Sbjct: 61  LVGSGVGTYEKGKKALQNWRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVY 120

Query: 125 VNESIRKKKTAASFGFGSGTLQGHLLV 151
           VNE+    K    F FGSGTLQGHLL 
Sbjct: 121 VNENRDTNKGRTCFSFGSGTLQGHLLA 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731084|gb|AFX67009.1| hypothetical protein [Solanum tuberosum]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/146 (70%), Positives = 120/146 (82%), Gaps = 1/146 (0%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSW RP+P EQKACI+KSG FNYD +++GAT KP   LK+D+ L+KDGF +N ARVL
Sbjct: 1   MVFLSWTRPSPDEQKACINKSGSFNYDNRFRGATDKPAPLLKQDRELAKDGFSVNCARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG ET+EKGK AL+ WRHFGLNWAFVDPK PIQ+G KFCVCVKEF PW+ +PLQ+VYV
Sbjct: 61  VGSGRETFEKGKAALQNWRHFGLNWAFVDPKAPIQSGTKFCVCVKEFFPWLMMPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLV 151
            E+ +  K  ASF FGSGTLQGHLL 
Sbjct: 121 TEN-KNSKMGASFSFGSGTLQGHLLA 145

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680073|ref|NP_849965.1| uncharacterized protein [Arabidopsis thaliana] gi|186501122|ref|NP_001118341.1| uncharacterized protein [Arabidopsis thaliana] gi|334184277|ref|NP_001189543.1| uncharacterized protein [Arabidopsis thaliana] gi|75151174|sp|Q8GXB1.1|U548_ARATH RecName: Full=UPF0548 protein At2g17695 gi|26451700|dbj|BAC42945.1| unknown protein [Arabidopsis thaliana] gi|28973335|gb|AAO63992.1| unknown protein [Arabidopsis thaliana] gi|330251573|gb|AEC06667.1| uncharacterized protein [Arabidopsis thaliana] gi|330251574|gb|AEC06668.1| uncharacterized protein [Arabidopsis thaliana] gi|330251575|gb|AEC06669.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 95/146 (65%), Positives = 121/146 (82%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSWGRP+ ++Q+  I+K+G FNYD KY+G +++ +A LKED  + KDGFL+NHARVL
Sbjct: 1   MVFLSWGRPSSEQQQQVINKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG E+YEKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct: 61  VGSGRESYEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLV 151
           +ES + +K  A FG+GSGTLQGHLL 
Sbjct: 121 DESRKSRKGPAHFGYGSGTLQGHLLA 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742205|emb|CBI34354.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 98/146 (67%), Positives = 116/146 (79%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFL W RP+PQ+QKAC++KSG  NYD+KYKG T KP + LKED+ LS+ GF +NHAR+L
Sbjct: 26  MVFLLWSRPSPQKQKACLEKSGGINYDSKYKGFTTKPASQLKEDKELSEAGFFINHARIL 85

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSGL+TYEKGK AL+ WRHF  +WAFVDP TPI+ GVKFCVC K FLPW  +PL++VYV
Sbjct: 86  VGSGLDTYEKGKVALENWRHFAFDWAFVDPTTPIRKGVKFCVCTKTFLPWTMMPLEVVYV 145

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLV 151
           +E     K  ASFGFGSGTL GHLL 
Sbjct: 146 DEKKNANKAIASFGFGSGTLHGHLLA 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431362|ref|XP_002278598.1| PREDICTED: UPF0548 protein At2g17695 [Vitis vinifera]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 98/146 (67%), Positives = 116/146 (79%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFL W RP+PQ+QKAC++KSG  NYD+KYKG T KP + LKED+ LS+ GF +NHAR+L
Sbjct: 1   MVFLLWSRPSPQKQKACLEKSGGINYDSKYKGFTTKPASQLKEDKELSEAGFFINHARIL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSGL+TYEKGK AL+ WRHF  +WAFVDP TPI+ GVKFCVC K FLPW  +PL++VYV
Sbjct: 61  VGSGLDTYEKGKVALENWRHFAFDWAFVDPTTPIRKGVKFCVCTKTFLPWTMMPLEVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLV 151
           +E     K  ASFGFGSGTL GHLL 
Sbjct: 121 DEKKNANKAIASFGFGSGTLHGHLLA 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133942|ref|XP_002327717.1| predicted protein [Populus trichocarpa] gi|222836802|gb|EEE75195.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 119/146 (81%), Gaps = 3/146 (2%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFL W +P+ QEQK C++KS  FNYD+KY+GAT+K  + L E   LSKDGFL+NHARVL
Sbjct: 1   MVFLCWAKPSLQEQKDCLNKSDGFNYDSKYRGATSKHASSLNE---LSKDGFLINHARVL 57

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG+ETYEKGK AL+ WRHFG +W FVD KTPI++GVKFCVCVKEFLPWV +PLQIVYV
Sbjct: 58  VGSGVETYEKGKLALENWRHFGFDWGFVDSKTPIRSGVKFCVCVKEFLPWVMMPLQIVYV 117

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLV 151
           NES   KK  ASF FG GTLQGHLL 
Sbjct: 118 NESRSSKKDMASFCFGGGTLQGHLLA 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:1005716645	205	AT2G17695 "AT2G17695" [Arabido	0.889	0.707	0.655	1.5e-53
DICTYBASE|DDB_G0271742	216	DDB_G0271742 "UPF0548 family p	0.564	0.425	0.297	1.4e-08

TAIR|locus:1005716645 AT2G17695 "AT2G17695" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 95/145 (65%), Positives = 121/145 (83%)

Query:     6 MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
             MVFLSWGRP+ ++Q+  I+K+G FNYD KY+G +++ +A LKED  + KDGFL+NHARVL
Sbjct:     1 MVFLSWGRPSSEQQQQVINKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVL 60

Query:    66 VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
             VGSG E+YEKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct:    61 VGSGRESYEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYV 120

Query:   126 NESIRKKKTAASFGFGSGTLQGHLL 150
             +ES + +K  A FG+GSGTLQGHLL
Sbjct:   121 DESRKSRKGPAHFGYGSGTLQGHLL 145

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

DICTYBASE|DDB_G0271742 DDB_G0271742 "UPF0548 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 130 (50.8 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 28/94 (29%), Positives = 51/94 (54%)

Query:    57 FLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWA-FVDPKTPIQNGVKFCVCVKEFLPW 115
             F ++  ++ +G+G+E ++K   ALK W+HF L+W  F    TPI  G    +  K+   W
Sbjct:    50 FDVDQVKIQLGTGVECFQKAVAALKQWKHFDLDWVDFYFKNTPIAVGETVGILSKQVGFW 109

Query:   116 VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHL 149
             +    +I Y+ +   ++  +  FG+  GTL+ H+
Sbjct:   110 ILSFARINYLYDG-DQEDGSIKFGYSYGTLKDHV 142


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      163       163   0.00084  107 3  11 22  0.49    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.07u 0.14s 16.21t   Elapsed:  00:00:01
  Total cpu time:  16.07u 0.14s 16.21t   Elapsed:  00:00:01
  Start:  Fri May 10 18:19:54 2013   End:  Fri May 10 18:19:55 2013

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GXB1	U548_ARATH	No assigned EC number	0.6506	0.8957	0.7121	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
pfam09348	158	pfam09348, DUF1990, Domain of unknown function (DU	2e-21
COG4762	168	COG4762, COG4762, Uncharacterized protein conserve	6e-04

>gnl|CDD|220195 pfam09348, DUF1990, Domain of unknown function (DUF1990)

 Score = 84.6 bits (210), Expect = 2e-21
 Identities = 38/109 (34%), Positives = 52/109 (47%), Gaps = 14/109 (12%)

Query: 49  DQGLSKD----GFLLNHARVLVGSG-LETYEKGKTALKTWRHFGLNWAFV-DPKTPIQNG 102
           + G + D    G+  +H RV +GSG  E +E+   AL +WR F L    V  P TP + G
Sbjct: 4   EVGATADGRPPGYHHDHVRVELGSGREEVFERAAQALLSWRMFRLAGVRVIAPATPPEVG 63

Query: 103 VKFCVCVKEFLPWVTLPLQIVYV-NESIRKKKTAASFGFGSGTLQGHLL 150
               +  +    WV  P ++VYV +E  R       FGF  GTL GH  
Sbjct: 64  RTVLLRARLGGLWVLAPCRVVYVVDEPRR-------FGFAYGTLPGHPE 105

This family of proteins are functionally uncharacterized. Length = 158

>gnl|CDD|227103 COG4762, COG4762, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 21/110 (19%)

Query: 49  DQGLSKDGFL---LNHARV--LVGSGLETYEKGKTALKTW---RHFGLNWAFVDPKTPIQ 100
           + G S  G L    NH  V   +G+G   +E    AL +W   R+ GL    V   +   
Sbjct: 15  EVGASATGRLPAGYNHLDVSLQLGTGEACFENAADALMSWGMHRNAGLR---VHASSSTV 71

Query: 101 NGVKFCVCVKEFLPW-VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHL 149
             V   + V     W +  P +++Y+ +           GFG GTL GH+
Sbjct: 72  VLVSAVLLVG---IWFLRAPCRVLYLIDEPDV------RGFGYGTLPGHV 112

Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
PF09348	158	DUF1990: Domain of unknown function (DUF1990); Int	100.0
COG4762	168	Uncharacterized protein conserved in bacteria [Fun	100.0
TIGR02266	96	gmx_TIGR02266 Myxococcus xanthus paralogous domain	90.1

>PF09348 DUF1990: Domain of unknown function (DUF1990); InterPro: IPR018960 This entry represents proteins that are functionally uncharacterised

Probab=100.00  E-value=5.2e-46  Score=295.30  Aligned_cols=116  Identities=27%  Similarity=0.385  Sum_probs=110.3

Q ss_pred             CCCCCCCCccCCCcccccccCCCCCCCceeeeeEEEecCCHHHHHHHHHHHhcccccccceeEe-cCCCCCcCCcEEEEE
Q 031248           30 NYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFV-DPKTPIQNGVKFCVC  108 (163)
Q Consensus        30 tY~~~~vGAT~~~~~~~~~~~~~~p~Gy~~~~~r~~lG~G~~~F~~A~~AL~~W~~~r~~g~~V-~~~~pv~~G~~V~v~  108 (163)
                      ||++  ||||+..         .+|+||+|++++++||+|+++|++|++||++|+||+++|++| .+++|+++|++|+++
T Consensus         1 tY~e--vgat~~~---------~~p~Gy~~~~~~~~lG~G~~~f~~A~~al~~W~~~~~~g~~v~~~~~~~~~G~~v~l~   69 (158)
T PF09348_consen    1 TYPE--VGATRQG---------ELPAGYRHVRRRVRLGSGEAVFERAAAALLSWRMHRRAGVRVRASDPPAAPGRTVVLR   69 (158)
T ss_pred             Cccc--ccccCCC---------CCCCCceEEEEEEEccCCchHHHHHHHHHhccCCCCCcEEEEECCCCccCCCCEEEEE
Confidence            8999  9999853         369999999999999999999999999999999999999999 566679999999999


Q ss_pred             eecccceeecceEEEEEeecccccCCcceeEEecccCCCCccCceeeEEEEecC
Q 031248          109 VKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCLHIIIVNS  162 (163)
Q Consensus       109 ~~~~~~~~~~PcRVVyv~dep~~~~~~~r~GFaYGTLpGHpe~GEE~F~v~~~~  162 (163)
                      ++++++|+.+|||||||+|||      +++||+|||||||||+|||+|.|+.|.
T Consensus        70 ~~~~~~~~~~p~RVv~v~de~------~r~GF~ygTL~GHpe~GEE~F~V~~~~  117 (158)
T PF09348_consen   70 AGVGPLWIRAPCRVVYVVDEP------DRFGFAYGTLPGHPERGEERFSVERDD  117 (158)
T ss_pred             eeccceEEEeeEEEEEEEcCC------ceEEEEEEeCCCChhhcEEEEEEEECC
Confidence            999999999999999999999      999999999999999999999999963

>COG4762 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=5.7e-37  Score=242.17  Aligned_cols=118  Identities=22%  Similarity=0.320  Sum_probs=107.3

Q ss_pred             cCCCCCCCCCCCccCCCcccccccCCCCCCCceeeeeEEEecCCHHHHHHHHHHHhcccccccceeEecCCCCCcCCcEE
Q 031248           26 SGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKF  105 (163)
Q Consensus        26 ~~~~tY~~~~vGAT~~~~~~~~~~~~~~p~Gy~~~~~r~~lG~G~~~F~~A~~AL~~W~~~r~~g~~V~~~~pv~~G~~V  105 (163)
                      ..+++|||  +|+|..         +..|+||+|.+++.+||.|++||++|++||++|+|||.+|++|..+.+..+++++
T Consensus         8 e~~~~~~e--~g~s~~---------gr~p~g~~~~~~~l~lG~GeacfenA~~aL~sw~~hr~aglrvh~s~s~vv~~~~   76 (168)
T COG4762           8 ELPLTYPE--VGASAT---------GRLPAGYNHLDVSLQLGTGEACFENAADALMSWGMHRNAGLRVHASSSTVVLVSA   76 (168)
T ss_pred             hcCCCccc--cccccc---------CcCCccccceeEEEEecccHHHHHHHHHHHhcccccccccEEeeccCCceeeeee
Confidence            56789999  999964         3599999999999999999999999999999999999999999998887787666


Q ss_pred             EEEeecccceeecceEEEEEeecccccCCcceeEEecccCCCCccCceeeEEEEecC
Q 031248          106 CVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLVSTCLHIIIVNS  162 (163)
Q Consensus       106 ~v~~~~~~~~~~~PcRVVyv~dep~~~~~~~r~GFaYGTLpGHpe~GEE~F~v~~~~  162 (163)
                      ++..|  +..+++||||+|++|||      ++.||+|||||||+++|||+|.|++|.
T Consensus        77 vllvg--~w~~r~~cRVL~l~d~~------~~~gf~yGTL~ghv~rgeErflierda  125 (168)
T COG4762          77 VLLVG--IWFLRAPCRVLYLIDEP------DVRGFGYGTLPGHVVRGEERFLIERDA  125 (168)
T ss_pred             eeeee--eeeeecccEEEEEecCC------ceeEEeecccCCccccchhheeEEecC
Confidence            66553  33388999999999999      999999999999999999999999985

>TIGR02266 gmx_TIGR02266 Myxococcus xanthus paralogous domain TIGR02266

Probab=90.10  E-value=0.78  Score=32.01  Aligned_cols=63  Identities=13%  Similarity=0.086  Sum_probs=44.3

Q ss_pred             eeEEEecCCHHHHHHHHHHHhcccccccceeEecCCCCCcCCcEEEEEeeccc--ceeecceEEEEEeecc
Q 031248           61 HARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFL--PWVTLPLQIVYVNESI  129 (163)
Q Consensus        61 ~~r~~lG~G~~~F~~A~~AL~~W~~~r~~g~~V~~~~pv~~G~~V~v~~~~~~--~~~~~PcRVVyv~dep  129 (163)
                      +.++.+.++...|+--..-      .-.+|+.+..+.+..+|+.|.+.+....  -.+...++|||+.+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~d------iS~gG~~~~~~~~~~~g~~v~l~l~l~~~~~~i~~~g~Vv~~~~~~   69 (96)
T TIGR02266         5 RLKVDFRTDSEFLRDYSIN------LSKGGLFIRTRKPLAVGTRVELKLTLPGGERPVELKGVVAWVRPAA   69 (96)
T ss_pred             EEEEEECChhhHHHHHhhh------cCCceEEEecCCCcCCCCEEEEEEEcCCCCeEEEEEEEEEEeCCCC
Confidence            4566777766555322211      2347899988888999999999886543  3477899999999755

This domain is related to Type IV pilus assembly protein PilZ (Pfam model pfam07238). It is found in at least 12 copies in Myxococcus xanthus DK 1622.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
3cnr_A	117	Type IV fimbriae assembly protein; PILZ, xanthomon	88.61
1ywu_A	149	Hypothetical protein PA4608; PAT7, beta barrel, PI	87.32
2l74_A	145	Putative uncharacterized protein PA4608; PILZ, C-D	85.61

>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A

Probab=88.61  E-value=1.4  Score=32.45  Aligned_cols=43  Identities=7%  Similarity=-0.025  Sum_probs=34.4

Q ss_pred             ccceeEecCCCCCcCCcEEEEEeecccc--eeecceEEEEEeecc
Q 031248           87 GLNWAFVDPKTPIQNGVKFCVCVKEFLP--WVTLPLQIVYVNESI  129 (163)
Q Consensus        87 r~~g~~V~~~~pv~~G~~V~v~~~~~~~--~~~~PcRVVyv~dep  129 (163)
                      ..+|++|.++.|..+|+.|.+.+.+..-  .+....+|||+....
T Consensus        30 s~GGlFI~T~~~~~~G~~V~l~l~Lp~~~~~i~~~GkVvWi~p~~   74 (117)
T 3cnr_A           30 KGGGIFVPTPKRYMLGDEVFLLLTLPDSSERLPVAGKVIWTTPAG   74 (117)
T ss_dssp             TTCEEEEECCSCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC-
T ss_pred             CCCeEEEeeCCccCCCCEEEEEEEcCCCCceEEEEEEEEEecCCC
Confidence            5689999999999999999999875432  356679999998654

>1ywu_A Hypothetical protein PA4608; PAT7, beta barrel, PILZ domain, structural genomics, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.45.2.1

Probab=87.32  E-value=1.8  Score=32.51  Aligned_cols=46  Identities=9%  Similarity=0.080  Sum_probs=34.7

Q ss_pred             ceeEecCCC--CCcCCcEEEEEeecc-cceeecceEEEEEeecccccCCcceeEEec
Q 031248           89 NWAFVDPKT--PIQNGVKFCVCVKEF-LPWVTLPLQIVYVNESIRKKKTAASFGFGS  142 (163)
Q Consensus        89 ~g~~V~~~~--pv~~G~~V~v~~~~~-~~~~~~PcRVVyv~dep~~~~~~~r~GFaY  142 (163)
                      +|+.|..+.  ++.+|+.|.|.+... ..-+..|++||++.+        ..+|+..
T Consensus        61 ~G~~I~~~~~~~~~~g~~v~v~~~l~~~~~i~~~~~Vvr~~~--------~~~gl~f  109 (149)
T 1ywu_A           61 HGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARD--------GLLGFEC  109 (149)
T ss_dssp             SEEEEECSSCCCCCTTSEEEEEEESSSSCEEEEEEEEEEEET--------TEEEEEE
T ss_pred             ccCEEEcCCcCCCCCCCEEEEEEEcCCCCeEEEEEEEEEEcC--------CEEEEEE
Confidence            688886554  588999999988744 234789999999986        5666654

>2l74_A Putative uncharacterized protein PA4608; PILZ, C-DI-GMP, unknown function, C-DI-GMP binding P; HET: C2E; NMR {Pseudomonas aeruginosa}

Probab=85.61  E-value=2.3  Score=31.69  Aligned_cols=46  Identities=9%  Similarity=0.080  Sum_probs=34.6

Q ss_pred             ceeEecCCC--CCcCCcEEEEEeecc-cceeecceEEEEEeecccccCCcceeEEec
Q 031248           89 NWAFVDPKT--PIQNGVKFCVCVKEF-LPWVTLPLQIVYVNESIRKKKTAASFGFGS  142 (163)
Q Consensus        89 ~g~~V~~~~--pv~~G~~V~v~~~~~-~~~~~~PcRVVyv~dep~~~~~~~r~GFaY  142 (163)
                      +|+.|..+.  ++.+|+.|.|.+... ..-+..|++||++.+        ..+|+..
T Consensus        59 ~G~~I~~~~~~~~~~g~~v~v~~~l~~~~~i~~~~~Vvr~~~--------~~~gl~f  107 (145)
T 2l74_A           59 HGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARD--------GLLGFEC  107 (145)
T ss_dssp             TEEEEECCTTCCCCTTSCEEEEEECSSSCEEEEEEEEEEEET--------TEEEEEE
T ss_pred             CCCEEEcCCccCCCCCCEEEEEEEcCCCCeEEEEEEEEEEcC--------CEEEEEE
Confidence            688886555  588999999988744 134789999999986        5666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1ywua1	125	Hypothetical protein PA4608 {Pseudomonas aeruginos	87.62

>d1ywua1 b.45.2.1 (A:1-125) Hypothetical protein PA4608 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Split barrel-like
superfamily: PilZ domain-like
family: PilZ domain
domain: Hypothetical protein PA4608
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.62  E-value=0.85  Score=31.15  Aligned_cols=39  Identities=5%  Similarity=-0.017  Sum_probs=29.6

Q ss_pred             ceeEecCCCC--CcCCcEEEEEeecc-cceeecceEEEEEee
Q 031248           89 NWAFVDPKTP--IQNGVKFCVCVKEF-LPWVTLPLQIVYVNE  127 (163)
Q Consensus        89 ~g~~V~~~~p--v~~G~~V~v~~~~~-~~~~~~PcRVVyv~d  127 (163)
                      +|+.+..+.+  +.+|..|.|.+..+ ...+..|+||||+.+
T Consensus        39 ~G~~i~~~~~~~~~~~~~v~l~l~l~~~~~i~~~~~Vv~~~~   80 (125)
T d1ywua1          39 HGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARD   80 (125)
T ss_dssp             SEEEEECSSCCCCCTTSEEEEEEESSSSCEEEEEEEEEEEET
T ss_pred             CcEEEEcCCCCCCCCCCEEEEEEEcCCCcEEEEEEEEEEEcC
Confidence            6877765544  66788888887654 356899999999976