Citrus Sinensis ID: 031251

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MGLSNIYEAVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTSASAKI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccHHHHHcccccHHHHHHHHHHcccccccccccccccccEEEEEcccccccHHHHHHHHHHccccccEEEEEEcccccEEEEEcccccEEEEEEcccccHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccHHHcccHHHHHHccccHHHcHHHHHHcHHHHHHHHcccccccEEEEEccccccccHHHHHHHHccccccccEEEEEEcccccEEEEEcccccEEEEEEEccccHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MGLSNIYEAVLFIVIISAVAVtskeqlstrecedlgftgLALCSDCNTFAEYVKDQELVADCLKCctedsddsmskiTYSGAILEACMRKLVFYPEIvgfieeekdkfptVRVQyvfnsppklimldeegqhketiriDNWKREHMLQFLQEkvkptsasaki
Flexible Loop (DISEMBL)
MGLSNIYEAVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIeeekdkfptVRVQYVFNSPpklimldeegqhkETIRIDNWKREHMLQflqekvkptsasaki
Low Complexity Region (SEG)
MGLSNIYEAVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTSASAKI
Disordered region (IsUnstruct)
****NIYEAVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFL*************
Disordered Region (DISOPRED)
*****IYEAVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCT**********TYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQE***********
Disordered Region (DISEMBL)
MGLSNIYEAVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQE***********
Disordered Region (DISPRO)
*GLSNIYEAVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLSNIYEAVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTSASAKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
O60613	162	15 kDa selenoprotein OS=H	yes	no	0.877	0.882	0.340	3e-17
A8YXY3	162	15 kDa selenoprotein OS=B	yes	no	0.877	0.882	0.333	7e-17
A1Z623	162	15 kDa selenoprotein OS=S	yes	no	0.877	0.882	0.324	4e-16
Q802F3	153	15 kDa selenoprotein OS=D	yes	no	0.785	0.836	0.351	5e-16
Q923V8	162	15 kDa selenoprotein OS=R	yes	no	0.877	0.882	0.326	3e-15
Q9ERR7	162	15 kDa selenoprotein OS=M	yes	no	0.877	0.882	0.319	7e-15
Q6X4M2	157	15 kDa selenoprotein OS=O	N/A	no	0.883	0.917	0.292	4e-13

>sp|O60613|SEP15_HUMAN 15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 4/147 (2%)

Query: 10  VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
           +L   ++ AV+    E  S+  C +LGF+   LCS C+   ++   Q L  DC  CC E+
Sbjct: 17  LLLATVLQAVSAFGAE-FSSEACRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEE 74

Query: 70  SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
           +     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+
Sbjct: 75  AQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDD 133

Query: 129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
            G   E + I  W  + + +FL EK++
Sbjct: 134 NGNIAEELSILKWNTDSVEEFLSEKLE 160

May be involved in redox reactions associated with the formation of disulfide bonds. May contribute to the quality control of protein folding in the endoplasmic reticulum.
Homo sapiens (taxid: 9606)

>sp|A8YXY3|SEP15_BOVIN 15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2

 Score = 86.7 bits (213), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 80/147 (54%), Gaps = 4/147 (2%)

Query: 10  VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
           +L   ++  V+    E  S+  C +LGF+   LCS C+   ++   Q L  DC  CC E+
Sbjct: 17  LLLATVLQTVSALGAE-FSSESCRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEE 74

Query: 70  SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
           +     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+
Sbjct: 75  AQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDD 133

Query: 129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
            G   E + I  W  + + +FL EK++
Sbjct: 134 SGNIAEELSILKWNTDSVEEFLSEKLE 160

May be involved in redox reactions associated with the formation of disulfide bonds. May contribute to the quality control of protein folding in the endoplasmic reticulum.

Bos taurus (taxid: 9913)

>sp|A1Z623|SEP15_PIG 15 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 5/148 (3%)

Query: 11  LFIVIISAVAVTS--KEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTE 68
           L +++ +A+ + S    + S+  C +LGF+   LC  C+   ++   Q L  DC  CC E
Sbjct: 15  LRLLLATALQMVSAFGAEFSSESCRELGFSSNLLCGSCDLLGQFDLLQ-LDPDCRGCCQE 73

Query: 69  DSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLD 127
           ++     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD
Sbjct: 74  EAQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLD 132

Query: 128 EEGQHKETIRIDNWKREHMLQFLQEKVK 155
           + G   E + I  W  + + +FL EK++
Sbjct: 133 DNGNIAEELSILKWNTDSVEEFLSEKLQ 160

May be involved in redox reactions associated with the formation of disulfide bonds. May contribute to the quality control of protein folding in the endoplasmic reticulum.

Sus scrofa (taxid: 9823)

>sp|Q802F3|SEP15_DANRE 15 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2

 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 3/131 (2%)

Query: 26  QLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILE 85
           +LS+  C +LGF+   LCS C    ++  +Q L   C +CC E++     K+ Y GAILE
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 80

Query: 86  ACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKRE 144
            C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+ G   E + I  W  +
Sbjct: 81  VCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 140

Query: 145 HMLQFLQEKVK 155
            + +FL EK++
Sbjct: 141 SVEEFLSEKLE 151

May be involved in redox reactions associated with the formation of disulfide bonds. May contribute to the quality control of protein folding in the endoplasmic reticulum.

Danio rerio (taxid: 7955)

>sp|Q923V8|SEP15_RAT 15 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3

 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 4/147 (2%)

Query: 10  VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
           +L      AV+    E  S+  C +LGF+   LCS C+   ++     L   C  CC E+
Sbjct: 17  LLLATAFQAVSALGAE-FSSEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEE 74

Query: 70  SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
           +     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+
Sbjct: 75  AQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDD 133

Query: 129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
            G   E + I  W  + + +FL EK++
Sbjct: 134 NGNIAEELSILKWNTDSVEEFLSEKLE 160

May be involved in redox reactions associated with the formation of disulfide bonds. May contribute to the quality control of protein folding in the endoplasmic reticulum.

Rattus norvegicus (taxid: 10116)

>sp|Q9ERR7|SEP15_MOUSE 15 kDa selenoprotein OS=Mus musculus GN=Sep15 PE=1 SV=3

 Score = 79.7 bits (195), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 4/147 (2%)

Query: 10  VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
           +L      AV+    E  ++  C +LGF+   LCS C+   ++     L   C  CC E+
Sbjct: 17  LLLATAFQAVSALGAE-FASEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEE 74

Query: 70  SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
           +     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+
Sbjct: 75  AQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDD 133

Query: 129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
            G   E + I  W  + + +FL EK++
Sbjct: 134 NGNIAEELSILKWNTDSVEEFLSEKLE 160

May be involved in redox reactions associated with the formation of disulfide bonds. May contribute to the quality control of protein folding in the endoplasmic reticulum.

Mus musculus (taxid: 10090)

>sp|Q6X4M2|SEP15_ONCMY 15 kDa selenoprotein OS=Oncorhynchus mykiss GN=sep15 PE=2 SV=2

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 10  VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
           +L+++ +          LS+  C +LGF+    CS C+   E+     +   C +CC ++
Sbjct: 7   ILWLLSLIQTLSAYGADLSSEACRELGFSSCWGCSSCDLLGEFSLSS-IQPVCKQCCQQE 65

Query: 70  SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
                 K+ Y GAILE C  KL  +P++  F+  +K K F  ++++YV  + P L +LD+
Sbjct: 66  VHMESRKL-YPGAILEVCGUKLGRFPQVQAFVRSDKPKMFKGLQIKYVRGADPILKLLDD 124

Query: 129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
            G   E   I  W  + + +FL EK++
Sbjct: 125 NGNIAEEPSILKWNTDSVEEFLSEKLE 151

May be involved in redox reactions associated with the formation of disulfide bonds. May contribute to the quality control of protein folding in the endoplasmic reticulum (By similarity). May be involved in retinal development.

Oncorhynchus mykiss (taxid: 8022)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
224146560	150	predicted protein [Populus trichocarpa]	0.914	0.993	0.853	3e-71
118483789	167	unknown [Populus trichocarpa]	0.957	0.934	0.778	6e-70
224121788	159	predicted protein [Populus trichocarpa]	0.957	0.981	0.778	1e-69
296084285	151	unnamed protein product [Vitis vinifera]	0.907	0.980	0.812	4e-69
225434108	165	PREDICTED: 15 kDa selenoprotein-like [Vi	0.907	0.896	0.812	5e-69
18390562	163	selenoprotein-like protein [Arabidopsis	0.914	0.914	0.771	7e-69
4836919	158	Hypothetical protein [Arabidopsis thalia	0.914	0.943	0.771	1e-68
21555290	158	unknown [Arabidopsis thaliana]	0.914	0.943	0.765	2e-68
449445674	171	PREDICTED: 15 kDa selenoprotein-like [Cu	0.926	0.883	0.788	6e-67
356500098	198	PREDICTED: 15 kDa selenoprotein-like [Gl	0.926	0.762	0.754	2e-65

>gi|224146560|ref|XP_002326051.1| predicted protein [Populus trichocarpa] gi|222862926|gb|EEF00433.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 128/150 (85%), Positives = 140/150 (93%), Gaps = 1/150 (0%)

Query: 10  VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
           +LF   +  + V SKEQLS+RECEDLGFTGLALCSDCNT AEYVK+QELV+DCLKCCTED
Sbjct: 1   LLFFTFVLPI-VKSKEQLSSRECEDLGFTGLALCSDCNTLAEYVKNQELVSDCLKCCTED 59

Query: 70  SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEE 129
           SDDS+SKITYSGAI+E CMRKLVFYPEIVGFIEEEKD+FPTV+VQY+FNSPPKLIMLD+E
Sbjct: 60  SDDSISKITYSGAIIEVCMRKLVFYPEIVGFIEEEKDQFPTVKVQYLFNSPPKLIMLDDE 119

Query: 130 GQHKETIRIDNWKREHMLQFLQEKVKPTSA 159
           GQHKETIRIDNWKREHMLQFLQEKVKP SA
Sbjct: 120 GQHKETIRIDNWKREHMLQFLQEKVKPASA 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483789|gb|ABK93787.1| unknown [Populus trichocarpa]

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 123/158 (77%), Positives = 147/158 (93%), Gaps = 2/158 (1%)

Query: 5   NIYEAVLFIVIISAVA--VTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADC 62
           ++Y+  + +++++ +   V SKEQLS+ ECEDLGF+GLALCSDC+TF+EYVK+QELV+DC
Sbjct: 10  DVYKYFILLLLVTFILPIVKSKEQLSSGECEDLGFSGLALCSDCHTFSEYVKNQELVSDC 69

Query: 63  LKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPK 122
           LKCCTEDSDDS+SKITYSGAILE CMRKLVFYPEIVGFIEEEKD+FPT +VQY+FNSPPK
Sbjct: 70  LKCCTEDSDDSISKITYSGAILEVCMRKLVFYPEIVGFIEEEKDQFPTFKVQYLFNSPPK 129

Query: 123 LIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTSAS 160
           LIMLD++GQHKETIRIDNWKREHMLQ+L+EKVKPTSAS
Sbjct: 130 LIMLDDKGQHKETIRIDNWKREHMLQYLREKVKPTSAS 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121788|ref|XP_002330653.1| predicted protein [Populus trichocarpa] gi|222872257|gb|EEF09388.1| predicted protein [Populus trichocarpa]

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/158 (77%), Positives = 147/158 (93%), Gaps = 2/158 (1%)

Query: 5   NIYEAVLFIVIISAVA--VTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADC 62
           ++Y+  + +++++ +   V SKEQLS+ ECEDLGF+GLALCSDC+TF+EYVK+QELV+DC
Sbjct: 2   DVYKYFILLLLVTFILPIVKSKEQLSSGECEDLGFSGLALCSDCHTFSEYVKNQELVSDC 61

Query: 63  LKCCTEDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPK 122
           LKCCTEDSDDS+SKITYSGAILE CMRKLVFYPEIVGFIEEEKD+FPT +VQY+FNSPPK
Sbjct: 62  LKCCTEDSDDSISKITYSGAILEVCMRKLVFYPEIVGFIEEEKDQFPTFKVQYLFNSPPK 121

Query: 123 LIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTSAS 160
           LIMLD++GQHKETIRIDNWKREHMLQ+L+EKVKPTSAS
Sbjct: 122 LIMLDDKGQHKETIRIDNWKREHMLQYLREKVKPTSAS 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084285|emb|CBI24673.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 121/149 (81%), Positives = 142/149 (95%), Gaps = 1/149 (0%)

Query: 12  FIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSD 71
           F+V++  +A +S+E LS++ECE+LGF+GLALCSDCNT AEYVKDQELV+DCLKCCTEDSD
Sbjct: 3   FLVVV-PLASSSREVLSSKECENLGFSGLALCSDCNTLAEYVKDQELVSDCLKCCTEDSD 61

Query: 72  DSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQ 131
           DSMSKITYSGAILE CMRKLVFYPE+VGFIEEEKDKFP+V+VQY+FNSPPKLIMLD++GQ
Sbjct: 62  DSMSKITYSGAILEVCMRKLVFYPEVVGFIEEEKDKFPSVKVQYLFNSPPKLIMLDDDGQ 121

Query: 132 HKETIRIDNWKREHMLQFLQEKVKPTSAS 160
           HKETIRIDNWKREH+LQFL+EKVKP S++
Sbjct: 122 HKETIRIDNWKREHILQFLREKVKPASSA 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434108|ref|XP_002273955.1| PREDICTED: 15 kDa selenoprotein-like [Vitis vinifera]

 Score =  265 bits (677), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 121/149 (81%), Positives = 142/149 (95%), Gaps = 1/149 (0%)

Query: 12  FIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSD 71
           F+V++  +A +S+E LS++ECE+LGF+GLALCSDCNT AEYVKDQELV+DCLKCCTEDSD
Sbjct: 17  FLVVV-PLASSSREVLSSKECENLGFSGLALCSDCNTLAEYVKDQELVSDCLKCCTEDSD 75

Query: 72  DSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQ 131
           DSMSKITYSGAILE CMRKLVFYPE+VGFIEEEKDKFP+V+VQY+FNSPPKLIMLD++GQ
Sbjct: 76  DSMSKITYSGAILEVCMRKLVFYPEVVGFIEEEKDKFPSVKVQYLFNSPPKLIMLDDDGQ 135

Query: 132 HKETIRIDNWKREHMLQFLQEKVKPTSAS 160
           HKETIRIDNWKREH+LQFL+EKVKP S++
Sbjct: 136 HKETIRIDNWKREHILQFLREKVKPASSA 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390562|ref|NP_563747.1| selenoprotein-like protein [Arabidopsis thaliana] gi|26452442|dbj|BAC43306.1| unknown protein [Arabidopsis thaliana] gi|28827308|gb|AAO50498.1| unknown protein [Arabidopsis thaliana] gi|332189763|gb|AEE27884.1| selenoprotein-like protein [Arabidopsis thaliana]

 Score =  264 bits (675), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 142/149 (95%)

Query: 12  FIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSD 71
            +++I A  +++KEQLST+ECEDLGF+GLALCSDC++ +EYVKDQELV+DCLKCC +DS+
Sbjct: 15  MMILILASTISAKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSDCLKCCADDSE 74

Query: 72  DSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQ 131
           DSMSK+TYSGAILE CMRKLVFYPEIVGFIEEEK+KFP+V+VQY+FNSPPKLIMLDE+G+
Sbjct: 75  DSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPPKLIMLDEDGE 134

Query: 132 HKETIRIDNWKREHMLQFLQEKVKPTSAS 160
           HKE+IRIDNWKREH+LQ+++EKVKPT+AS
Sbjct: 135 HKESIRIDNWKREHLLQYMREKVKPTAAS 163

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4836919|gb|AAD30621.1|AC007153_13 Hypothetical protein [Arabidopsis thaliana]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 142/149 (95%)

Query: 12  FIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSD 71
            +++I A  +++KEQLST+ECEDLGF+GLALCSDC++ +EYVKDQELV+DCLKCC +DS+
Sbjct: 10  MMILILASTISAKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSDCLKCCADDSE 69

Query: 72  DSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQ 131
           DSMSK+TYSGAILE CMRKLVFYPEIVGFIEEEK+KFP+V+VQY+FNSPPKLIMLDE+G+
Sbjct: 70  DSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPPKLIMLDEDGE 129

Query: 132 HKETIRIDNWKREHMLQFLQEKVKPTSAS 160
           HKE+IRIDNWKREH+LQ+++EKVKPT+AS
Sbjct: 130 HKESIRIDNWKREHLLQYMREKVKPTAAS 158

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21555290|gb|AAM63825.1| unknown [Arabidopsis thaliana]

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 114/149 (76%), Positives = 142/149 (95%)

Query: 12  FIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSD 71
            ++++ A  +++KEQLST+ECEDLGF+GLALCSDC++ +EYVKDQELV+DCLKCC +DS+
Sbjct: 10  MMILMLASTISAKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSDCLKCCADDSE 69

Query: 72  DSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQ 131
           DSMSK+TYSGAILE CMRKLVFYPEIVGFIEEEK+KFP+V+VQY+FNSPPKLIMLDE+G+
Sbjct: 70  DSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPPKLIMLDEDGE 129

Query: 132 HKETIRIDNWKREHMLQFLQEKVKPTSAS 160
           HKE+IRIDNWKREH+LQ+++EKVKPT+AS
Sbjct: 130 HKESIRIDNWKREHLLQYMREKVKPTAAS 158

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445674|ref|XP_004140597.1| PREDICTED: 15 kDa selenoprotein-like [Cucumis sativus] gi|449487319|ref|XP_004157568.1| PREDICTED: 15 kDa selenoprotein-like [Cucumis sativus]

 Score =  258 bits (659), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 119/151 (78%), Positives = 135/151 (89%)

Query: 9   AVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTE 68
           A   I I S   V SKEQLS+RECEDLGFTGLALCSDC+T AEY+KDQELV+DCLKCC E
Sbjct: 20  ATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAE 79

Query: 69  DSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDE 128
           DSDD+ SKITYSGA+LE CMRKLVFYPEIVGFIE++KD+FP+V+VQY FNSPPKLI+LD+
Sbjct: 80  DSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDD 139

Query: 129 EGQHKETIRIDNWKREHMLQFLQEKVKPTSA 159
           +GQHKE+IRIDNWKREH LQFLQEKVK +SA
Sbjct: 140 KGQHKESIRIDNWKREHFLQFLQEKVKRSSA 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500098|ref|XP_003518871.1| PREDICTED: 15 kDa selenoprotein-like [Glycine max]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 136/151 (90%)

Query: 9   AVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTE 68
           AV+ ++ +S     S EQLS+RECE+LGFTGLALCSDCNT +EYVKD+ELV+DC KCCTE
Sbjct: 47  AVIVVLALSLSLGASAEQLSSRECENLGFTGLALCSDCNTLSEYVKDKELVSDCFKCCTE 106

Query: 69  DSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDE 128
           DS+D+ +KITYSGA+LE CMRKLVFYPE+VGFIE+EKD+FP+V+VQYVFNSPPKLIMLDE
Sbjct: 107 DSNDATTKITYSGALLEVCMRKLVFYPEVVGFIEDEKDQFPSVKVQYVFNSPPKLIMLDE 166

Query: 129 EGQHKETIRIDNWKREHMLQFLQEKVKPTSA 159
            GQ KETIRIDNWKREH+LQFL+EKVKP ++
Sbjct: 167 VGQQKETIRIDNWKREHILQFLREKVKPLAS 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2031928	163	AT1G05720 "AT1G05720" [Arabido	0.907	0.907	0.777	1.1e-64
DICTYBASE|DDB_G0268396	166	sep15 "15 kDa selenoprotein" [	0.852	0.837	0.338	4e-19
UNIPROTKB|O60613	162	SEP15 "15 kDa selenoprotein" [	0.877	0.882	0.340	4e-19
UNIPROTKB|A8YXY3	162	SEP15 "15 kDa selenoprotein" [	0.877	0.882	0.333	5.1e-19
ZFIN|ZDB-GENE-030327-1	153	sep15 "selenoprotein 15" [Dani	0.785	0.836	0.351	3.6e-18
UNIPROTKB|A1Z623	162	SEP15 "15 kDa selenoprotein" [	0.877	0.882	0.324	4.6e-18
RGD|621291	162	Sep15 "selenoprotein 15" [Ratt	0.877	0.882	0.326	2.5e-17
MGI|MGI:1927947	162	Sep15 "selenoprotein" [Mus mus	0.877	0.882	0.319	5.3e-17
FB|FBgn0036745	178	CG7484 [Drosophila melanogaste	0.852	0.780	0.303	7.7e-16
UNIPROTKB|Q6X4M2	157	sep15 "15 kDa selenoprotein" [	0.883	0.917	0.302	2.6e-15

TAIR|locus:2031928 AT1G05720 "AT1G05720" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 115/148 (77%), Positives = 142/148 (95%)

Query:    13 IVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDD 72
             +++I A  +++KEQLST+ECEDLGF+GLALCSDC++ +EYVKDQELV+DCLKCC +DS+D
Sbjct:    16 MILILASTISAKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSDCLKCCADDSED 75

Query:    73 SMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQH 132
             SMSK+TYSGAILE CMRKLVFYPEIVGFIEEEK+KFP+V+VQY+FNSPPKLIMLDE+G+H
Sbjct:    76 SMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPPKLIMLDEDGEH 135

Query:   133 KETIRIDNWKREHMLQFLQEKVKPTSAS 160
             KE+IRIDNWKREH+LQ+++EKVKPT+AS
Sbjct:   136 KESIRIDNWKREHLLQYMREKVKPTAAS 163

GO:0008150 "biological_process" evidence=ND

GO:0008430 "selenium binding" evidence=ISS

DICTYBASE|DDB_G0268396 sep15 "15 kDa selenoprotein" [Dictyostelium discoideum (taxid:44689)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 48/142 (33%), Positives = 76/142 (53%)

Query:     9 AVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTE 68
             A+   ++I+     S    S   C +LGFT   LCS C  FAE+V D     +C  CC+E
Sbjct:    22 AIFLCILINDCQGVSSPGTSASSCHELGFTDALLCSTCKDFAEFVGDSAFGHECSICCSE 81

Query:    69 DSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDE 128
             +S+    K TY    L  C  +L  +P+I  FI  +   +  + V+Y   + P+L ++D 
Sbjct:    82 ESEKV--KKTYQSVSLVVCQURLGAHPQIKEFINNKAKLYSKLSVKYENGANPRLTLVDS 139

Query:   129 EGQHKETIRIDNWKREHMLQFL 150
             EG+ KE I I++WK E++ ++L
Sbjct:   140 EGK-KEDINIESWKLENLEEYL 160

GO:0016259 "selenocysteine metabolic process" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0008430 "selenium binding" evidence=ISS

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|O60613 SEP15 "15 kDa selenoprotein" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 50/147 (34%), Positives = 81/147 (55%)

Query:    10 VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
             +L   ++ AV+    E  S+  C +LGF+   LCS C+   ++   Q L  DC  CC E+
Sbjct:    17 LLLATVLQAVSAFGAE-FSSEACRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEE 74

Query:    70 SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
             +     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+
Sbjct:    75 AQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDD 133

Query:   129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
              G   E + I  W  + + +FL EK++
Sbjct:   134 NGNIAEELSILKWNTDSVEEFLSEKLE 160

GO:0008430 "selenium binding" evidence=IDA

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005788 "endoplasmic reticulum lumen" evidence=IDA

UNIPROTKB|A8YXY3 SEP15 "15 kDa selenoprotein" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 49/147 (33%), Positives = 80/147 (54%)

Query:    10 VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
             +L   ++  V+    E  S+  C +LGF+   LCS C+   ++   Q L  DC  CC E+
Sbjct:    17 LLLATVLQTVSALGAE-FSSESCRELGFSSNLLCSSCDLLGQFNLLQ-LDPDCRGCCQEE 74

Query:    70 SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
             +     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+
Sbjct:    75 AQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDD 133

Query:   129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
              G   E + I  W  + + +FL EK++
Sbjct:   134 SGNIAEELSILKWNTDSVEEFLSEKLE 160

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

ZFIN|ZDB-GENE-030327-1 sep15 "selenoprotein 15" [Danio rerio (taxid:7955)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 46/131 (35%), Positives = 74/131 (56%)

Query:    26 QLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILE 85
             +LS+  C +LGF+   LCS C    ++  +Q L   C +CC E++     K+ Y GAILE
Sbjct:    23 ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 80

Query:    86 ACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKRE 144
              C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+ G   E + I  W  +
Sbjct:    81 VCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 140

Query:   145 HMLQFLQEKVK 155
              + +FL EK++
Sbjct:   141 SVEEFLSEKLE 151

GO:0008430 "selenium binding" evidence=ISS

GO:0005788 "endoplasmic reticulum lumen" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|A1Z623 SEP15 "15 kDa selenoprotein" [Sus scrofa (taxid:9823)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 48/148 (32%), Positives = 82/148 (55%)

Query:    11 LFIVIISAVAVTSK--EQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTE 68
             L +++ +A+ + S    + S+  C +LGF+   LC  C+   ++   Q L  DC  CC E
Sbjct:    15 LRLLLATALQMVSAFGAEFSSESCRELGFSSNLLCGSCDLLGQFDLLQ-LDPDCRGCCQE 73

Query:    69 DSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLD 127
             ++     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD
Sbjct:    74 EAQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLD 132

Query:   128 EEGQHKETIRIDNWKREHMLQFLQEKVK 155
             + G   E + I  W  + + +FL EK++
Sbjct:   133 DNGNIAEELSILKWNTDSVEEFLSEKLQ 160

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

RGD|621291 Sep15 "selenoprotein 15" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 48/147 (32%), Positives = 77/147 (52%)

Query:    10 VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
             +L      AV+    E  S+  C +LGF+   LCS C+   ++     L   C  CC E+
Sbjct:    17 LLLATAFQAVSALGAE-FSSEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEE 74

Query:    70 SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
             +     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+
Sbjct:    75 AQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDD 133

Query:   129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
              G   E + I  W  + + +FL EK++
Sbjct:   134 NGNIAEELSILKWNTDSVEEFLSEKLE 160

GO:0005515 "protein binding" evidence=IPI

GO:0005788 "endoplasmic reticulum lumen" evidence=ISO;ISS

GO:0008379 "thioredoxin peroxidase activity" evidence=IDA

GO:0008430 "selenium binding" evidence=ISO;IDA

GO:0035092 "sperm chromatin condensation" evidence=IMP

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

MGI|MGI:1927947 Sep15 "selenoprotein" [Mus musculus (taxid:10090)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 47/147 (31%), Positives = 77/147 (52%)

Query:    10 VLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTED 69
             +L      AV+    E  ++  C +LGF+   LCS C+   ++     L   C  CC E+
Sbjct:    17 LLLATAFQAVSALGAE-FASEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEE 74

Query:    70 SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDE 128
             +     K+ Y+GAILE C  KL  +P++  F+  +K K F  ++++YV  S P L +LD+
Sbjct:    75 AQFETKKL-YAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDD 133

Query:   129 EGQHKETIRIDNWKREHMLQFLQEKVK 155
              G   E + I  W  + + +FL EK++
Sbjct:   134 NGNIAEELSILKWNTDSVEEFLSEKLE 160

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=ISO;ISS

GO:0008379 "thioredoxin peroxidase activity" evidence=ISO

GO:0008430 "selenium binding" evidence=ISO;IDA

GO:0035092 "sperm chromatin condensation" evidence=ISO

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=ISO

FB|FBgn0036745 CG7484 [Drosophila melanogaster (taxid:7227)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 44/145 (30%), Positives = 76/145 (52%)

Query:     9 AVLFIVIISAVAVTSKEQLSTRECEDLGFTGLAL-CSDCNTFAEYVKDQELVADCLKCCT 67
             A+  ++ +S   + +  +L+  +C  LGF    L CS C    ++  D  +   C +CCT
Sbjct:     5 AIFLLLALSCQQIQA--ELTAADCRALGFIKAQLMCSSCEKLDDFGLDT-IKPQCKQCCT 61

Query:    68 EDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKD-KFPTVRVQYVFNSPPKLIML 126
              D   +  + TY+ AILE C  K   YP+I  FI+  +  KFP ++++YV    P + +L
Sbjct:    62 LDQQPAAQR-TYAKAILEVCTCKFRAYPQIQAFIQSGRPAKFPNLQIKYVRGLDPVVKLL 120

Query:   127 DEEGQHKETIRIDNWKREHMLQFLQ 151
             D  G+ +ET+ I  W  + + +F +
Sbjct:   121 DASGKVQETLSITKWNTDTVEEFFE 145

GO:0045454 "cell redox homeostasis" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=IDA

UNIPROTKB|Q6X4M2 sep15 "15 kDa selenoprotein" [Oncorhynchus mykiss (taxid:8022)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 45/149 (30%), Positives = 76/149 (51%)

Query:    10 VLFIVIISAVAVTSK--EQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCT 67
             V  + ++S +   S     LS+  C +LGF+    CS C+   E+     +   C +CC 
Sbjct:     5 VYILWLLSLIQTLSAYGADLSSEACRELGFSSCWGCSSCDLLGEFSLSS-IQPVCKQCCQ 63

Query:    68 EDSDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIML 126
             ++      K+ Y GAILE C  KL  +P++  F+  +K K F  ++++YV  + P L +L
Sbjct:    64 QEVHMESRKL-YPGAILEVCGUKLGRFPQVQAFVRSDKPKMFKGLQIKYVRGADPILKLL 122

Query:   127 DEEGQHKETIRIDNWKREHMLQFLQEKVK 155
             D+ G   E   I  W  + + +FL EK++
Sbjct:   123 DDNGNIAEEPSILKWNTDSVEEFLSEKLE 151

GO:0005788 "endoplasmic reticulum lumen" evidence=ISS

GO:0008430 "selenium binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ERR7	SEP15_MOUSE	No assigned EC number	0.3197	0.8773	0.8827	yes	no
Q923V8	SEP15_RAT	No assigned EC number	0.3265	0.8773	0.8827	yes	no
A1Z623	SEP15_PIG	No assigned EC number	0.3243	0.8773	0.8827	yes	no
A8YXY3	SEP15_BOVIN	No assigned EC number	0.3333	0.8773	0.8827	yes	no
O60613	SEP15_HUMAN	No assigned EC number	0.3401	0.8773	0.8827	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
pfam08806	77	pfam08806, Sep15_SelM, Sep15/SelM redox domain	1e-25

>gnl|CDD|192160 pfam08806, Sep15_SelM, Sep15/SelM redox domain

 Score = 92.8 bits (231), Expect = 1e-25
 Identities = 30/77 (38%), Positives = 44/77 (57%)

Query: 80  SGAILEACMRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRID 139
            GA+ E C  KL   PE+  FI E+   FP + ++YV  + P+L++LD  GQ  E + I 
Sbjct: 1   RGAVEECCGCKLNRLPEVKAFIREDIPLFPNLEIKYVPGADPELVLLDANGQEVERLSIS 60

Query: 140 NWKREHMLQFLQEKVKP 156
            WKR+ + +FL EK   
Sbjct: 61  KWKRDEINEFLLEKGFK 77

Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
KOG3384	154	consensus Selenoprotein [General function predicti	100.0
PF08806	78	Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR	99.97
KOG3445	145	consensus Mitochondrial/chloroplast ribosomal prot	87.95
PF05047	52	L51_S25_CI-B8: Mitochondrial ribosomal protein L51	87.59

>KOG3384 consensus Selenoprotein [General function prediction only]

Probab=100.00  E-value=3.3e-57  Score=354.40  Aligned_cols=149  Identities=51%  Similarity=0.975  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHhhhccccCCChhhHHhCCCCCCCCCCCchhhhccccchhhHHHhhhhccccccccccccccceeEEEE
Q 031251            7 YEAVLFIVIISAVAVTSKEQLSTRECEDLGFTGLALCSDCNTFAEYVKDQELVADCLKCCTEDSDDSMSKITYSGAILEA   86 (163)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~s~~~C~~LGF~~~llCSsC~~L~~f~l~~~L~~~C~~CC~~e~~~~~~k~~y~~A~Lev   86 (163)
                      +-+.++++++|+.+.++.++++.++|++|||+++++||||+.|++|+++ +|++||++||++|++.+++| .||+|+|||
T Consensus         5 ~vl~~ll~~vl~~~~~~~ee~s~eeC~~lGFs~~llCs~Ce~Lsdy~ld-ql~~dClqCC~~d~e~~~~k-~Ya~AILEV   82 (154)
T KOG3384|consen    5 VVLSLLLALVLASTISAKEELSTEECEDLGFSGLLLCSSCESLSDYVLD-QLVPDCLQCCADDSEFSMSK-VYAGAILEV   82 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchhhhhhhhHHHHHHHHHH-hhhhHHHHHhhccchhHHhh-hhhHHHHHH
Confidence            4455667777777888999999999999999999999999999999998 89999999999999999998 699999999


Q ss_pred             ecccccccchhhhhhh-hhhccCCCeEEEEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCCC
Q 031251           87 CMRKLVFYPEIVGFIE-EEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPT  157 (163)
Q Consensus        87 C~ckL~~~PeVk~FV~-~~~~~f~~L~vkyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~~  157 (163)
                      |+|||+||||||+||+ +++++||||+|||+||.||+++|+|++|+++|+++|+||+||++.||+++|++|.
T Consensus        83 C~ckl~~yPqiqaFi~sd~~~kFp~vkvkyVrg~~P~l~llDadgk~kE~lsI~kWntdtl~eff~ekleri  154 (154)
T KOG3384|consen   83 CMCKLVRYPQIQAFIESDEPEKFPGVKVKYVRGSDPVLKLLDADGKHKESLSIDKWNTDTLEEFFREKLERI  154 (154)
T ss_pred             HHhhhcccHHHHHHHhcCchhhCCCceEEEecCCCCeeEeecCCCCccceeeecccChHHHHHHHHHHhcCC
Confidence            9999999999999999 5899999999999999999999999999999999999999999999999999873

>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []

Probab=99.97  E-value=5e-32  Score=193.96  Aligned_cols=75  Identities=43%  Similarity=0.830  Sum_probs=64.0

Q ss_pred             eeEEEEecccccccchhhhhhhhhh-ccCCCeEEEEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcC
Q 031251           81 GAILEACMRKLVFYPEIVGFIEEEK-DKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK  155 (163)
Q Consensus        81 ~A~LevC~ckL~~~PeVk~FV~~~~-~~f~~L~vkyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~  155 (163)
                      +|+||||+|+|++|||||+||+++. +.||||+|+|++|++|+|+|+|++|+++|+|+|++|++|+|++||.+|+.
T Consensus         2 ~~vl~~~~C~L~~~Pevk~Fi~~~~~~~y~~v~vk~i~G~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kgf   77 (78)
T PF08806_consen    2 GAVLECCGCKLNRYPEVKAFIKSDVPPLYPNVEVKYIPGAPPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKGF   77 (78)
T ss_dssp             EEEEEETT-TTTTTCCHHHHCCCCCGHHBTTEEEEEESS---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT-
T ss_pred             ceEEEeCchhhhcChHHHHHHhccchhccCceEEEEeCCCCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhCC
Confidence            6899999999999999999999777 99999999999999999999999999999999999999999999999974

This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.

>KOG3445 consensus Mitochondrial/chloroplast ribosomal protein 36a [Translation, ribosomal structure and biogenesis]

Probab=87.95  E-value=3.4  Score=33.10  Aligned_cols=70  Identities=16%  Similarity=0.097  Sum_probs=55.8

Q ss_pred             ceeEEEEecccccccc-hhhhhhhhh----hccCCCeEE--EEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHH
Q 031251           80 SGAILEACMRKLVFYP-EIVGFIEEE----KDKFPTVRV--QYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFL  150 (163)
Q Consensus        80 ~~A~LevC~ckL~~~P-eVk~FV~~~----~~~f~~L~v--kyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL  150 (163)
                      +--+|++-=|+.|... .+++||+.+    ++++|+++|  +-.+|.-|.|+-...|| ..-.|.+.+++-|+|..-+
T Consensus        22 ql~rit~sfCnwggSSrGmR~Fle~~L~~~a~enP~v~i~v~~rrg~hP~lraeY~NG-re~vicvrnms~eevs~~~   98 (145)
T KOG3445|consen   22 QLRRITVSFCNWGGSSRGMREFLESELPDLARENPGVVIYVEPRRGQHPLLRAEYLNG-RERVICVRNMSQEEVSKKA   98 (145)
T ss_pred             eeeEEEEEEecCCCccHHHHHHHHHHHHHHHhhCCCeEEEEeccCCCCceEEEEecCC-ceEEEeeccCCHHHHHHHH
Confidence            3446777778888654 799999965    456688654  78899999999999999 6677899999999997643

>PF05047 L51_S25_CI-B8: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ; InterPro: IPR007741 Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25

Probab=87.59  E-value=1  Score=28.96  Aligned_cols=45  Identities=22%  Similarity=0.276  Sum_probs=26.6

Q ss_pred             hhhhhhhhhccC----CCe--EEEEecCCCCeEEEecCCCCeeeEEecCCCC
Q 031251           97 IVGFIEEEKDKF----PTV--RVQYVFNSPPKLIMLDEEGQHKETIRIDNWK  142 (163)
Q Consensus        97 Vk~FV~~~~~~f----~~L--~vkyv~Ga~P~L~LlD~~g~~~E~i~I~~W~  142 (163)
                      ++.||+++.+.|    |++  .|+...|..|.|+..-.+| ...+|++.+.+
T Consensus         1 ~R~F~~~~lp~l~~~NP~v~~~v~~~~~~~P~~~~~y~~G-~~~~i~~~n~~   51 (52)
T PF05047_consen    1 ARDFLKNNLPTLKYHNPQVQFEVRRRRGRHPFLTAEYLNG-REKTIDVKNKS   51 (52)
T ss_dssp             HHHHHHHTHHHHHHHSTT--EEEE---SSS-EEEEEESS---EEEEE-TT--
T ss_pred             CHhHHHHhHHHHHHHCCCcEEEEEECCCCCCEEEEEEcCC-CEEEEECCCCC
Confidence            467888765544    665  4466777789999999999 77888887753

This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) 1.6.5.3 from EC. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.; PDB: 1S3A_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
2a4h_A	126	Solution Structure Of Sep15 From Drosophila Melanog		2e-08

>pdb|2A4H|A Chain A, Solution Structure Of Sep15 From Drosophila Melanogaster Length = 126

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78  TYSGAILEACMRKLVFYPEIVGFIEEEKD-KFPTVRVQYVFNSPPKLIMLDEEGQHKETI 136
           TY+ AILE C  K   YP+I  FI+  +  KFP ++++YV    P + +LD  G+ +ET+
Sbjct: 19  TYAKAILEVCTCKFRAYPQIQAFIQSGRPAKFPNLQIKYVRGLDPVVKLLDASGKVQETL 78
Query: 137 RIDNWKREHMLQFLQ 151
            I  W  + + +F +
Sbjct: 79  SITKWNTDTVEEFFE 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
2a4h_A	126	Selenoprotein SEP15; redox, oxidoreductase; NMR {D	4e-33
2a2p_A	129	Selenoprotein M, SELM protein; redox enzyme, oxido	8e-19

>2a4h_A Selenoprotein SEP15; redox, oxidoreductase; NMR {Drosophila melanogaster} SCOP: c.47.1.23 Length = 126

 Score =  112 bits (282), Expect = 4e-33
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 70  SDDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKD-KFPTVRVQYVFNSPPKLIMLDE 128
                ++ TY+ AILE C  K   YP+I  FI+  +  KFP ++++YV    P + +LD 
Sbjct: 11  DQQPAAQRTYAKAILEVCTCKFRAYPQIQAFIQSGRPAKFPNLQIKYVRGLDPVVKLLDA 70

Query: 129 EGQHKETIRIDNWKREHMLQFLQEKVKPTSASA 161
            G+ +ET+ I  W  + + +F +  +    A  
Sbjct: 71  SGKVQETLSITKWNTDTVEEFFETHLAKDGAGK 103

>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23 Length = 129

 Score = 76.4 bits (187), Expect = 8e-19
 Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 78  TYSGAILEACM-RKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETI 136
             +   +E C   +L    E+  F+ E+   +  + ++++  + P+L++L    Q  E I
Sbjct: 13  GLARGRVETCGGCQLNRLKEVKAFVTEDIQLYHNLVMKHLPGADPELVLLSRNYQELERI 72

Query: 137 RIDNWKREHMLQFLQEK 153
            +    R+ +   +QE 
Sbjct: 73  PLSQMTRDEINALVQEL 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
2a4h_A	126	Selenoprotein SEP15; redox, oxidoreductase; NMR {D	100.0
2a2p_A	129	Selenoprotein M, SELM protein; redox enzyme, oxido	99.97
1s3a_A	102	NADH-ubiquinone oxidoreductase B8 subunit; CI-B8,	96.11
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	93.61
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	90.91
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	90.34
3raz_A	151	Thioredoxin-related protein; structural genomics,	89.64
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	89.5
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	89.39
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	89.28
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	88.92
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	88.81
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	88.45
2kuc_A	130	Putative disulphide-isomerase; structural genomics	88.22
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	88.17
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	88.13
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	87.81
3me7_A	170	Putative uncharacterized protein; electron transfe	87.79
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	87.5
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	86.77
2l57_A	126	Uncharacterized protein; structural genomics, unkn	86.69
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	85.46
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	84.9
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	84.28
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	83.67
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	83.44
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	83.03
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	82.76
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	83.17
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	82.4
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	81.91
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	81.74
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	81.52
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	80.53

>2a4h_A Selenoprotein SEP15; redox, oxidoreductase; NMR {Drosophila melanogaster} SCOP: c.47.1.23

Probab=100.00  E-value=4.1e-36  Score=230.76  Aligned_cols=88  Identities=31%  Similarity=0.647  Sum_probs=81.9

Q ss_pred             cccccccccceeEEEEecccccccchhhhhhhhhhcc-CCCeEEEEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHH
Q 031251           71 DDSMSKITYSGAILEACMRKLVFYPEIVGFIEEEKDK-FPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQF  149 (163)
Q Consensus        71 ~~~~~k~~y~~A~LevC~ckL~~~PeVk~FV~~~~~~-f~~L~vkyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~ef  149 (163)
                      +....| +||+|+||||+|||++|||||+||++++++ ||||+|+|++|+||+|+|+|++|+++|+|+|++|+||+|+||
T Consensus        13 ~~~~~k-~Ya~A~LEvC~CKL~~yPeVk~FI~~d~~~~fpnL~vkyv~Ga~P~LvLlD~~Ge~~E~I~IekW~tD~I~ef   91 (126)
T 2a4h_A           13 QPAAQR-TYAKAILEVCTCKFRAYPQIQAFIQSGRPAKFPNLQIKYVRGLDPVVKLLDASGKVQETLSITKWNTDTVEEF   91 (126)
T ss_dssp             CCCSSC-CCSCBEEECCSCTTTTCTTHHHHHHHTTGGGCTTBCCCCCSSCCCEEEECCSSSCCSEEEECSSSSCSHHHHH
T ss_pred             cchhhc-ccCceEEEEcchhhhcCHHHHHHHccchhhhCCceEEEEecCCCCEEEEecCCCCEeeEeccccCCHHHHHHH
Confidence            445666 899999999999999999999999975555 999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCcc
Q 031251          150 LQEKVKPTSA  159 (163)
Q Consensus       150 L~~kL~~~~~  159 (163)
                      |.+||+|..+
T Consensus        92 L~ekL~~~~~  101 (126)
T 2a4h_A           92 FETHLAKDGA  101 (126)
T ss_dssp             HHHHSCCCCS
T ss_pred             HHHHhhhhcC
Confidence            9999999765

>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23

Probab=99.97  E-value=5.5e-31  Score=203.29  Aligned_cols=80  Identities=19%  Similarity=0.282  Sum_probs=76.7

Q ss_pred             ccceeEEEEe-cccccccchhhhhhhhhhccCCCeEEEEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCC
Q 031251           78 TYSGAILEAC-MRKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKP  156 (163)
Q Consensus        78 ~y~~A~LevC-~ckL~~~PeVk~FV~~~~~~f~~L~vkyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~  156 (163)
                      +|++|+|||| +|||++|||||+||+++++.|+||+|+|++|++|+|+|+|++|+++|+|+|++|++|+|++||.+|-=.
T Consensus        13 ~yarA~lEvC~~CkL~~~PeIk~FIk~d~~~y~~v~Vkyi~Ga~P~LvL~D~~G~e~E~I~Iekw~~d~I~efL~e~GF~   92 (129)
T 2a2p_A           13 GLARGRVETCGGCQLNRLKEVKAFVTEDIQLYHNLVMKHLPGADPELVLLSRNYQELERIPLSQMTRDEINALVQELGFY   92 (129)
T ss_dssp             TCCEEEEEEETTCCCSTTHHHHHHTTTHHHHBTTEEEEEESSCCCEEEEECSSSCCCEEEECSSSCHHHHHHHHHHHTCC
T ss_pred             ccceEEEEECCCcccccchhHHHHHhCchhhcCceeEEEeCCCCCEEEEecCCCCEEEEeecccCCHHHHHHHHHHcCCc
Confidence            8999999999 899999999999999999999999999999999999999999999999999999999999999998543


Q ss_pred             C
Q 031251          157 T  157 (163)
Q Consensus       157 ~  157 (163)
                      .
T Consensus        93 r   93 (129)
T 2a2p_A           93 R   93 (129)
T ss_dssp             B
T ss_pred             c
Confidence            3

>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22

Probab=96.11  E-value=0.021  Score=41.18  Aligned_cols=71  Identities=15%  Similarity=0.235  Sum_probs=54.6

Q ss_pred             EEEecccccc-cchhhhhhhhhhcc----CCCe--EEEEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcC
Q 031251           84 LEACMRKLVF-YPEIVGFIEEEKDK----FPTV--RVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK  155 (163)
Q Consensus        84 LevC~ckL~~-~PeVk~FV~~~~~~----f~~L--~vkyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~  155 (163)
                      |.+--|+.+. ...+.+||+.+.+.    -|++  .|+...|..|.|+....+|+ ...|++++.+.++|.+-|.....
T Consensus        22 l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~~~~~~P~i~a~Y~~G~-ek~i~l~n~s~~eI~~~l~~l~~   99 (102)
T 1s3a_A           22 IRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQ-ETNVPLNNFSADQVTRALENVLS   99 (102)
T ss_dssp             EEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCCSSSCEEEEEESSCC-EEEEECTTCCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEECCCCCCEEEEEECCCC-EEEEECCCCCHHHHHHHHHHHHh
Confidence            3333355554 57899999966444    4774  45677788999999999995 78999999999999999887653

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=93.61  E-value=0.093  Score=37.36  Aligned_cols=65  Identities=20%  Similarity=0.266  Sum_probs=46.2

Q ss_pred             ccchhhhhhhhhhccCCCeE-----------E--EEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCCCc
Q 031251           93 FYPEIVGFIEEEKDKFPTVR-----------V--QYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTS  158 (163)
Q Consensus        93 ~~PeVk~FV~~~~~~f~~L~-----------v--kyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~~~  158 (163)
                      .-..+++|++++.-.|+.+.           +  +|-...-|..+++|.+|+...++. -..+.+++.+.|.+.|...+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-g~~~~~~l~~~i~~ll~~~~  158 (160)
T 3lor_A           81 TPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQF-GQVDDFVLGLLLGSLLSETD  158 (160)
T ss_dssp             CHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEE-SCCCHHHHHHHHHHHHTCC-
T ss_pred             CHHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEec-CcCCHHHHHHHHHHHHhccC
Confidence            34579999998766676421           1  122335699999999998777543 45688999999999887654

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=90.91  E-value=0.13  Score=36.25  Aligned_cols=65  Identities=12%  Similarity=0.206  Sum_probs=44.5

Q ss_pred             chhhhhhhhhhccCCCe-----EE--EEecCCCCeEEEecCCCCeeeEEe-cCCCCHHHHHHHHHhhcCCCcc
Q 031251           95 PEIVGFIEEEKDKFPTV-----RV--QYVFNSPPKLIMLDEEGQHKETIR-IDNWKREHMLQFLQEKVKPTSA  159 (163)
Q Consensus        95 PeVk~FV~~~~~~f~~L-----~v--kyv~Ga~P~L~LlD~~g~~~E~i~-I~~W~~D~I~efL~~kL~~~~~  159 (163)
                      .++++|++++...|+-+     ++  .|....-|.++++|.+|+...+.. ...++.+++.++|.+.+...++
T Consensus        74 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~~~  146 (152)
T 3gl3_A           74 GDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGNEG  146 (152)
T ss_dssp             HHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHcCCCCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccccc
Confidence            46888888766555421     11  133345699999999999887664 4568899999999998877654

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=90.34  E-value=0.48  Score=34.55  Aligned_cols=38  Identities=16%  Similarity=0.299  Sum_probs=32.0

Q ss_pred             CCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCC
Q 031251          119 SPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKP  156 (163)
Q Consensus       119 a~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~  156 (163)
                      .-|+++++|.+|++..++....|+.+.+.++|.+.++.
T Consensus       116 ~~Pt~~~~d~~G~~~~~~G~~~~~~~~l~~~l~~~l~~  153 (154)
T 2ju5_A          116 GFPELVFIDAEGKQLARMGFEPGGGAAYVSKVKSALKL  153 (154)
T ss_dssp             SSSEEEEECTTCCEEEEECCCTTCHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEcCCCCEEEEecCCCCCHHHHHHHHHHHHhc
Confidence            47999999999999888744567899999999987764

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=89.64  E-value=0.28  Score=34.85  Aligned_cols=66  Identities=12%  Similarity=0.135  Sum_probs=47.6

Q ss_pred             cccchhhhhhhhhhccCCCeEEE----------Ee--cCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCCCc
Q 031251           92 VFYPEIVGFIEEEKDKFPTVRVQ----------YV--FNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTS  158 (163)
Q Consensus        92 ~~~PeVk~FV~~~~~~f~~L~vk----------yv--~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~~~  158 (163)
                      ..-+++++|++++.-.||.+...          |-  .+.-|.++++|.+|+...++ ....+.+++.++|.+-++...
T Consensus        66 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-~g~~~~~~l~~~l~~l~~~~~  143 (151)
T 3raz_A           66 DTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTI-TGEVNEKSLTDAVKLAHSKCR  143 (151)
T ss_dssp             SCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEEC-CSCCCHHHHHHHHHHHHTC--
T ss_pred             CChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEE-CCCCCHHHHHHHHHHHHHHhh
Confidence            55678999999887778765321          22  44679999999999876654 345688999999987766543

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=89.50  E-value=0.27  Score=34.55  Aligned_cols=54  Identities=17%  Similarity=0.180  Sum_probs=38.2

Q ss_pred             chhhhhhhhhhccCCCe---------EEEEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHh
Q 031251           95 PEIVGFIEEEKDKFPTV---------RVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQE  152 (163)
Q Consensus        95 PeVk~FV~~~~~~f~~L---------~vkyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~  152 (163)
                      .++++|+++....|+++         .-.|.....|.++++|.+|+...+..    +.+.|++||.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~----~~~~l~~~l~e  142 (142)
T 3eur_A           80 DEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDA----TLQKVEQYLAE  142 (142)
T ss_dssp             HHHHHHGGGSCTTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEEE----CHHHHHHHHHC
T ss_pred             HHHHHHHHhcccccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecCC----CHHHHHHHHhC
Confidence            46888888766555442         11334456799999999998877653    58999999864

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=89.39  E-value=0.23  Score=33.92  Aligned_cols=60  Identities=8%  Similarity=0.218  Sum_probs=40.7

Q ss_pred             cchhhhhhhhhhccCCCe-----EE--EEecCCCCeEEEecCCCCeeeEEe-c-CCCCHHHHHHHHHhhc
Q 031251           94 YPEIVGFIEEEKDKFPTV-----RV--QYVFNSPPKLIMLDEEGQHKETIR-I-DNWKREHMLQFLQEKV  154 (163)
Q Consensus        94 ~PeVk~FV~~~~~~f~~L-----~v--kyv~Ga~P~L~LlD~~g~~~E~i~-I-~~W~~D~I~efL~~kL  154 (163)
                      -.++++|++++.-.|+.+     ++  +|....-|.++++|.+|+.. ++. . ...+.+++.++|.+.|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           67 VGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             HHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            347888888765555422     11  23334569999999999887 332 1 4578999999998765

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=89.28  E-value=0.16  Score=35.26  Aligned_cols=58  Identities=21%  Similarity=0.218  Sum_probs=41.4

Q ss_pred             chhhhhhhhhhccCCCe--------EE--EEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCC
Q 031251           95 PEIVGFIEEEKDKFPTV--------RV--QYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKP  156 (163)
Q Consensus        95 PeVk~FV~~~~~~f~~L--------~v--kyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~  156 (163)
                      .++++|++++.-.|+.+        ++  +|-...-|.++++|.+|+...+..    +.+++.++|.+.|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~----~~~~l~~~l~~ll~~  147 (148)
T 3fkf_A           80 EAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDI----QGEALTGKLKELLKT  147 (148)
T ss_dssp             HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC----CHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEecC----CHHHHHHHHHHHHcc
Confidence            47888888766555432        11  233336699999999998887765    999999999988764

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=88.92  E-value=1.1  Score=32.14  Aligned_cols=37  Identities=5%  Similarity=0.142  Sum_probs=30.4

Q ss_pred             CCCeEEEecCCCCeeeEEec-CCCCHHHHHHHHHhhcC
Q 031251          119 SPPKLIMLDEEGQHKETIRI-DNWKREHMLQFLQEKVK  155 (163)
Q Consensus       119 a~P~L~LlD~~g~~~E~i~I-~~W~~D~I~efL~~kL~  155 (163)
                      +.|...++|.+|+...++.= ..|+.++|.+.|.+.|+
T Consensus       135 ~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          135 HQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             SCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             eeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence            46889999999998887653 34889999999988765

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=88.81  E-value=0.77  Score=31.60  Aligned_cols=63  Identities=13%  Similarity=0.070  Sum_probs=45.0

Q ss_pred             cchhhhhhhhhhccCCCe-----EE--EEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCCC
Q 031251           94 YPEIVGFIEEEKDKFPTV-----RV--QYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPT  157 (163)
Q Consensus        94 ~PeVk~FV~~~~~~f~~L-----~v--kyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~~  157 (163)
                      ..++++|++++.-.|+-+     ++  +|....-|.++++|.+|+...+..- ..+.+++.++|.+.|...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g-~~~~~~l~~~l~~~l~~~  147 (148)
T 2b5x_A           78 PGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAG-GSGMKMLEKRVNRVLAET  147 (148)
T ss_dssp             HHHHHHHHHHTTCCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEES-CSTTHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecC-CCCHHHHHHHHHHHHhcc
Confidence            457899998776666532     11  1333466999999999988776543 468899999999888653

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=88.45  E-value=0.25  Score=33.56  Aligned_cols=60  Identities=10%  Similarity=0.240  Sum_probs=40.3

Q ss_pred             cchhhhhhhhhhc-cCCCe-------EEEEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcC
Q 031251           94 YPEIVGFIEEEKD-KFPTV-------RVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK  155 (163)
Q Consensus        94 ~PeVk~FV~~~~~-~f~~L-------~vkyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~  155 (163)
                      -.++++|++++.- .|+.+       .-+|....-|.++++|.+|+.. + .....+.+++.++|.+.|+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~-~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           68 VPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD-V-VRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             HHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE-E-EESCCCHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE-E-EecCCCHHHHHHHHHHHhc
Confidence            3468888875543 44321       1123334679999999999887 3 3455789999999988775

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=88.22  E-value=1  Score=30.90  Aligned_cols=40  Identities=13%  Similarity=0.220  Sum_probs=32.1

Q ss_pred             CCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCCCcc
Q 031251          119 SPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTSA  159 (163)
Q Consensus       119 a~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~~~~  159 (163)
                      .-|+++++|.+|+...++. -..+.+++.++|.+.+.+...
T Consensus        86 ~~Pt~~~~d~~G~~~~~~~-G~~~~~~l~~~l~~~~~~~~~  125 (130)
T 2kuc_A           86 AYPTLLFINSSGEVVYRLV-GAEDAPELLKKVKLGVESEGH  125 (130)
T ss_dssp             SSCEEEEECTTSCEEEEEE-SCCCHHHHHHHHHHHHSCCC-
T ss_pred             CCCEEEEECCCCcEEEEec-CCCCHHHHHHHHHHHHHhccc
Confidence            4699999999998877653 345789999999999988764

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=88.17  E-value=0.92  Score=31.88  Aligned_cols=64  Identities=14%  Similarity=0.315  Sum_probs=44.6

Q ss_pred             chhhhhhhhhhccCCCe-----EE--EEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCCCcc
Q 031251           95 PEIVGFIEEEKDKFPTV-----RV--QYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTSA  159 (163)
Q Consensus        95 PeVk~FV~~~~~~f~~L-----~v--kyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~~~~  159 (163)
                      ..+++|++++.-.|+-+     ++  +|....-|.++++|.+|+...++. -.++.+++.++|...+.....
T Consensus        72 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-G~~~~~~l~~~l~~ll~~~~~  142 (151)
T 2f9s_A           72 IAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVT-GTMTESMIHDYMNLIKPGETS  142 (151)
T ss_dssp             HHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEE-SCCCHHHHHHHHHHHSCC---
T ss_pred             HHHHHHHHHcCCCceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEEe-CCCCHHHHHHHHHHHHhhhhc
Confidence            47889998776666532     11  133335699999999998776654 556999999999988876553

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=88.13  E-value=0.47  Score=32.99  Aligned_cols=57  Identities=12%  Similarity=0.138  Sum_probs=39.3

Q ss_pred             chhhhhhhhhhccCCCeE-------E--EEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcC
Q 031251           95 PEIVGFIEEEKDKFPTVR-------V--QYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK  155 (163)
Q Consensus        95 PeVk~FV~~~~~~f~~L~-------v--kyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~  155 (163)
                      ..+++|++++.-.|+.+-       .  .|....-|.++++|.+|+...    ...+.++|.++|.+...
T Consensus        76 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~----~~~~~~~l~~~l~~~~~  141 (142)
T 3ewl_A           76 EEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVIL----KDTSMEQLIDYLATQAG  141 (142)
T ss_dssp             HHHHHHHTTSCTTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEE----CSCCHHHHHHHHHC---
T ss_pred             HHHHHHHHHcCCCcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEe----cCCCHHHHHHHHHHHcc
Confidence            367888887665554321       1  344446799999999998765    46789999999987643

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=87.81  E-value=2.2  Score=30.04  Aligned_cols=65  Identities=15%  Similarity=0.221  Sum_probs=46.6

Q ss_pred             ccchhhhhhhhhhccCCCeEE------------EEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCCCc
Q 031251           93 FYPEIVGFIEEEKDKFPTVRV------------QYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTS  158 (163)
Q Consensus        93 ~~PeVk~FV~~~~~~f~~L~v------------kyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~~~  158 (163)
                      .-.++++|++++.-.|+.+--            .|-...-|..+++|.+|+...++. -..+.+++.+.|.+.|....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-g~~~~~~l~~~i~~ll~~~~  155 (158)
T 3eyt_A           79 TPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAHHF-GDVSELLLGAEIATLLGEAA  155 (158)
T ss_dssp             CHHHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEEEE-SCCCHHHHHHHHHHHHTSCC
T ss_pred             CHHHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEEEe-CCCCHHHHHHHHHHHhccCC
Confidence            345799999987766764211            122235699999999997776554 45789999999999887654

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=87.79  E-value=2.1  Score=31.57  Aligned_cols=64  Identities=20%  Similarity=0.101  Sum_probs=48.7

Q ss_pred             hhhhhhhhhhccCCCeEE--------------------E---EecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHh
Q 031251           96 EIVGFIEEEKDKFPTVRV--------------------Q---YVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQE  152 (163)
Q Consensus        96 eVk~FV~~~~~~f~~L~v--------------------k---yv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~  152 (163)
                      .+++|+++....|++..+                    .   |...+.|.+.|+|.+|+....+.=..++.++|.+.|.+
T Consensus        80 ~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~  159 (170)
T 3me7_A           80 DIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRL  159 (170)
T ss_dssp             HHHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            588888877666655211                    1   22346789999999999988877778999999999999


Q ss_pred             hcCCCcc
Q 031251          153 KVKPTSA  159 (163)
Q Consensus       153 kL~~~~~  159 (163)
                      .+.....
T Consensus       160 ~~~~~~~  166 (170)
T 3me7_A          160 ARGEGHH  166 (170)
T ss_dssp             HTTCSCT
T ss_pred             hhccccc
Confidence            8887654

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=87.50  E-value=0.76  Score=33.69  Aligned_cols=65  Identities=17%  Similarity=0.256  Sum_probs=43.5

Q ss_pred             chhhhhhhhhhc-cCCCeE-----------EEEecCCCCeEEEecCCCCeeeEEe-cCCCCHHHHHHHHHhhcCCCcc
Q 031251           95 PEIVGFIEEEKD-KFPTVR-----------VQYVFNSPPKLIMLDEEGQHKETIR-IDNWKREHMLQFLQEKVKPTSA  159 (163)
Q Consensus        95 PeVk~FV~~~~~-~f~~L~-----------vkyv~Ga~P~L~LlD~~g~~~E~i~-I~~W~~D~I~efL~~kL~~~~~  159 (163)
                      .++++|++++.- .|+-+.           +.+....-|.++++|.+|++..++. ...|+.+++.++|...|....+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~~a~  184 (186)
T 1jfu_A          107 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGKAAA  184 (186)
T ss_dssp             THHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhccccc
Confidence            468899986543 344321           0000125799999999999987764 4678999999999998876543

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=86.77  E-value=0.54  Score=33.16  Aligned_cols=64  Identities=14%  Similarity=0.174  Sum_probs=44.5

Q ss_pred             cchhhhhhhhhhccCCCeEE----------EEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCCCc
Q 031251           94 YPEIVGFIEEEKDKFPTVRV----------QYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTS  158 (163)
Q Consensus        94 ~PeVk~FV~~~~~~f~~L~v----------kyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~~~  158 (163)
                      ..++++|++++...|+.+.-          +|-...-|.++++|.+|+...+.. ...+.+++.++|.+.++...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-g~~~~~~l~~~l~~~~~~~~  147 (154)
T 3ia1_A           74 REVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFA-GRAGREALLDALLLAGADLE  147 (154)
T ss_dssp             HHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEE-SBCCHHHHHHHHHHTTCCC-
T ss_pred             HHHHHHHHHHcCCCcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEEc-CCCCHHHHHHHHHhccCccc
Confidence            44688888765544433211          233336699999999998777653 55789999999999887654

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=86.69  E-value=1.6  Score=29.83  Aligned_cols=40  Identities=15%  Similarity=0.195  Sum_probs=32.5

Q ss_pred             CCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCCCcc
Q 031251          119 SPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTSA  159 (163)
Q Consensus       119 a~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~~~~  159 (163)
                      .-|+++++|.+|++..++. -..+.+++.++|.+.+.+...
T Consensus        82 ~~Pt~~~~~~~G~~~~~~~-G~~~~~~l~~~l~~~~~~~~~  121 (126)
T 2l57_A           82 IVPTTVFLDKEGNKFYVHQ-GLMRKNNIETILNSLGVKEGH  121 (126)
T ss_dssp             SSSEEEEECTTCCEEEEEE-SCCCHHHHHHHHHHHCCCCCC
T ss_pred             ceeEEEEECCCCCEEEEec-CCCCHHHHHHHHHHHhccccc
Confidence            5699999999998877543 457899999999999887653

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=85.46  E-value=0.6  Score=34.45  Aligned_cols=64  Identities=17%  Similarity=0.191  Sum_probs=44.8

Q ss_pred             chhhhhhhhhhccCCCeE-----E--EEecCCCCeEEEecCCCCeeeEEecC--------CCCHHHHHHHHHhhcCCCc
Q 031251           95 PEIVGFIEEEKDKFPTVR-----V--QYVFNSPPKLIMLDEEGQHKETIRID--------NWKREHMLQFLQEKVKPTS  158 (163)
Q Consensus        95 PeVk~FV~~~~~~f~~L~-----v--kyv~Ga~P~L~LlD~~g~~~E~i~I~--------~W~~D~I~efL~~kL~~~~  158 (163)
                      .++++|++++.-.|+-+.     +  +|....-|.++++|.+|+...+..++        .++.++|.+.|.+.+....
T Consensus        99 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  177 (196)
T 2ywi_A           99 ENMKKVAEELGYPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRP  177 (196)
T ss_dssp             HHHHHHHHHHTCCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCC
Confidence            468899987766665321     1  12222459999999999988876543        4588999999988876544

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=84.90  E-value=1.7  Score=30.26  Aligned_cols=37  Identities=11%  Similarity=0.355  Sum_probs=29.5

Q ss_pred             CCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCC
Q 031251          118 NSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKP  156 (163)
Q Consensus       118 Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~  156 (163)
                      ..-|+++++|.+|+..  ...-..+.++|.++|.+.|+.
T Consensus       104 ~~~Pt~~~~~~~g~~~--~~~G~~~~~~l~~~l~~~l~k  140 (141)
T 3hxs_A          104 QSIPTIWFVPMKGEPQ--VNMGALSKEQLKGYIDKVLLK  140 (141)
T ss_dssp             CSSSEEEEECSSSCCE--EEESCCCHHHHHHHHHHTTC-
T ss_pred             CCcCEEEEEeCCCCEE--EEeCCCCHHHHHHHHHHHHcc
Confidence            3569999999999775  345667999999999998864

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=84.28  E-value=0.5  Score=34.83  Aligned_cols=65  Identities=15%  Similarity=0.281  Sum_probs=44.3

Q ss_pred             cchhhhhhhhhhccCCCeE-----EEEecC--CCCeEEEecCCCCeeeEEecCCC-------CHHHHHHHHHhhcCCCc
Q 031251           94 YPEIVGFIEEEKDKFPTVR-----VQYVFN--SPPKLIMLDEEGQHKETIRIDNW-------KREHMLQFLQEKVKPTS  158 (163)
Q Consensus        94 ~PeVk~FV~~~~~~f~~L~-----vkyv~G--a~P~L~LlD~~g~~~E~i~I~~W-------~~D~I~efL~~kL~~~~  158 (163)
                      ...+++|++++.-.|+.+.     +...+|  ..|..+++|.+|+...+-.++.+       +.++|.+.|.+.+....
T Consensus        84 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  162 (188)
T 2cvb_A           84 PEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE  162 (188)
T ss_dssp             HHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCCCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCC
Confidence            3578999997766665321     111223  34999999999998887444332       67899999988876544

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=83.67  E-value=1.5  Score=30.73  Aligned_cols=39  Identities=13%  Similarity=0.227  Sum_probs=31.3

Q ss_pred             CCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCCCc
Q 031251          118 NSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTS  158 (163)
Q Consensus       118 Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~~~  158 (163)
                      ..-|+++++|.+|+.. + ..-..+.+.|.++|.+.+....
T Consensus        91 ~~~Pt~~~~~~~G~~~-~-~~G~~~~~~l~~~l~~~~~~~~  129 (136)
T 2l5l_A           91 RSIPSILFIPMEGKPE-M-AQGAMPKASFKKAIDEFLLKKE  129 (136)
T ss_dssp             CSSCEEEEECSSSCCE-E-EESCCCHHHHHHHHHHHHTSCT
T ss_pred             CCCCEEEEECCCCcEE-E-EeCCCCHHHHHHHHHHHhhccC
Confidence            3569999999999876 3 3567899999999999887653

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=83.44  E-value=0.57  Score=33.14  Aligned_cols=57  Identities=19%  Similarity=0.264  Sum_probs=41.4

Q ss_pred             chhhhhhhhhhccCCCeE--------E--EEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcC
Q 031251           95 PEIVGFIEEEKDKFPTVR--------V--QYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK  155 (163)
Q Consensus        95 PeVk~FV~~~~~~f~~L~--------v--kyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~  155 (163)
                      .++++|++++.-.|+.+.        +  .|-...-|..+++|.+|+...+..    +.+++.+.|.+.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~----~~~~l~~~l~~ll~  148 (150)
T 3fw2_A           82 QQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNL----RGEELKKKIENIVE  148 (150)
T ss_dssp             HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEccC----CHHHHHHHHHHHHh
Confidence            478999987766665431        1  233336699999999998887763    88899988887654

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=83.03  E-value=1.7  Score=30.06  Aligned_cols=36  Identities=11%  Similarity=0.354  Sum_probs=28.8

Q ss_pred             CCCCeEEEecCCCCeeeEEecC------CCCHHHHHHHHHhh
Q 031251          118 NSPPKLIMLDEEGQHKETIRID------NWKREHMLQFLQEK  153 (163)
Q Consensus       118 Ga~P~L~LlD~~g~~~E~i~I~------~W~~D~I~efL~~k  153 (163)
                      ..-|+++++|.+|+...+..-.      .++.+++.+||.+-
T Consensus        90 ~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A           90 DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             GCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             CccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence            4569999999999887765442      48999999999864

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=82.76  E-value=1.2  Score=31.42  Aligned_cols=60  Identities=20%  Similarity=0.314  Sum_probs=41.3

Q ss_pred             cchhhhhhhhhhccCCCeEE----------EEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCCC
Q 031251           94 YPEIVGFIEEEKDKFPTVRV----------QYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPT  157 (163)
Q Consensus        94 ~PeVk~FV~~~~~~f~~L~v----------kyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~~  157 (163)
                      -.++++|++++...|+.+.-          +|-...-|.++++|.+|+...+.    .+.+++.++|.+.+...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~----~~~~~l~~~l~~l~~~~  143 (152)
T 2lrn_A           74 EEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKE----LRGDDLYNTVEKFVNGA  143 (152)
T ss_dssp             HHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEEC----CCTTHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEee----CCHHHHHHHHHHHHhhc
Confidence            34788888876656654321          12233569999999999887775    36688988888766644

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=83.17  E-value=0.26  Score=34.21  Aligned_cols=59  Identities=12%  Similarity=0.228  Sum_probs=39.6

Q ss_pred             chhhhhhhhhhccCCCe--------EE--EEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhc
Q 031251           95 PEIVGFIEEEKDKFPTV--------RV--QYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKV  154 (163)
Q Consensus        95 PeVk~FV~~~~~~f~~L--------~v--kyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL  154 (163)
                      .++++|++++...|+.+        ++  +|-...-|.++++|.+|++..+.....|......+ +++++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~-~~~~~  142 (143)
T 2lus_A           74 DDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQSLGPRA-FQNWA  142 (143)
Confidence            36888888665455432        22  34344579999999999998887777776555555 65554

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=82.40  E-value=1.8  Score=31.58  Aligned_cols=61  Identities=13%  Similarity=0.175  Sum_probs=43.9

Q ss_pred             cchhhhhhhhhhccCCCeEE-----E-----EecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcC
Q 031251           94 YPEIVGFIEEEKDKFPTVRV-----Q-----YVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK  155 (163)
Q Consensus        94 ~PeVk~FV~~~~~~f~~L~v-----k-----yv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~  155 (163)
                      -..+++|++++.-.|+.+--     .     |....-|..+++|.+|+...++. ..++.++|.++|.+.|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-g~~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          111 RDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFL-REVTSKDVLDVALPLVD  181 (183)
T ss_dssp             HHHHHHHHHHTTCCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEEC-SCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEEc-CCCCHHHHHHHHHHHHh
Confidence            34688999877666665311     0     12245699999999998877654 55799999999988765

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=81.91  E-value=2  Score=29.97  Aligned_cols=60  Identities=13%  Similarity=0.214  Sum_probs=41.9

Q ss_pred             chhhhhhhhhhccCCCeEEE--------EecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcC
Q 031251           95 PEIVGFIEEEKDKFPTVRVQ--------YVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK  155 (163)
Q Consensus        95 PeVk~FV~~~~~~f~~L~vk--------yv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~  155 (163)
                      ..+++|++++.-.|+.+-..        |-...-|..+++|.+|+...++. -..+.+.+.++|.+.|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~-g~~~~~~l~~~l~~~l~  152 (156)
T 1kng_A           85 DNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLV-GPITPDNLRSVLLPQME  152 (156)
T ss_dssp             HHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEEEE-SCCCHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEEEe-CCCCHHHHHHHHHHHHH
Confidence            46888988777677743222        33335699999999998776553 34578888888887664

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=81.74  E-value=1.3  Score=32.45  Aligned_cols=44  Identities=5%  Similarity=0.112  Sum_probs=33.6

Q ss_pred             CeEEEEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcC
Q 031251          110 TVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVK  155 (163)
Q Consensus       110 ~L~vkyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~  155 (163)
                      ++..+|..-..|+|+|++ +|+++.++ +--.+.+.+.++|.+.+.
T Consensus        67 ~la~~~~V~g~PT~i~f~-~G~ev~Ri-~G~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           67 GLELARPVTFTPTFVLMA-GDVESGRL-EGYPGEDFFWPMLARLIG  110 (116)
T ss_dssp             TCBCSSCCCSSSEEEEEE-TTEEEEEE-ECCCCHHHHHHHHHHHHH
T ss_pred             hHHHHCCCCCCCEEEEEE-CCEEEeee-cCCCCHHHHHHHHHHHHh
Confidence            344455555789999999 99998876 467788998888877654

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=81.52  E-value=1.5  Score=30.66  Aligned_cols=64  Identities=16%  Similarity=0.330  Sum_probs=43.2

Q ss_pred             cchhhhhhhhhhccCCCeE-----E--EEecCCCCeEEEecCCCCeeeEEec-CCCCHHHHHHHHHhhcCCC
Q 031251           94 YPEIVGFIEEEKDKFPTVR-----V--QYVFNSPPKLIMLDEEGQHKETIRI-DNWKREHMLQFLQEKVKPT  157 (163)
Q Consensus        94 ~PeVk~FV~~~~~~f~~L~-----v--kyv~Ga~P~L~LlD~~g~~~E~i~I-~~W~~D~I~efL~~kL~~~  157 (163)
                      -.++++|++++.-.|+-+.     +  .|-...-|..+++|.+|+...++.= ..|+.+++.++|.+-....
T Consensus        74 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~  145 (154)
T 3kcm_A           74 KVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKA  145 (154)
T ss_dssp             HHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC----
T ss_pred             hHHHHHHHHHcCCCeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHHh
Confidence            3468888887765665431     1  1333356999999999999887654 4599999999998765543

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=80.53  E-value=0.43  Score=33.51  Aligned_cols=64  Identities=14%  Similarity=0.212  Sum_probs=43.9

Q ss_pred             chhhhhhhhhhccCCCe------EE--EEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCCCcc
Q 031251           95 PEIVGFIEEEKDKFPTV------RV--QYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKPTSA  159 (163)
Q Consensus        95 PeVk~FV~~~~~~f~~L------~v--kyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~~~~  159 (163)
                      .++++|+++....|+.+      ++  +|....-|.++++|.+|+...+. .-.++.+++.++|.+.+...+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-~g~~~~~~l~~~l~~~~~~~~~  147 (152)
T 2lja_A           76 KAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISAN-MTRPSDPKTAEKFNELLGLEGH  147 (152)
T ss_dssp             HHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESS-CCCTTCHHHHHHHHHHHTCCSS
T ss_pred             HHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEcc-CCCCCHHHHHHHHHHHhccccc
Confidence            46888888654433211      11  23333569999999999887764 3468999999999988876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d2a4ha1	117	c.47.1.23 (A:62-178) Selenoprotein sep15 {Drosophi	1e-36
d2a2pa1	120	c.47.1.23 (A:25-144) Selenoprotein M {Mouse (Mus m	6e-29

>d2a4ha1 c.47.1.23 (A:62-178) Selenoprotein sep15 {Drosophila melanogaster [TaxId: 7227]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Selenoprotein W-related
domain: Selenoprotein sep15
species: Drosophila melanogaster [TaxId: 7227]

 Score =  120 bits (303), Expect = 1e-36
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 72  DSMSKITYSGAILEACMRKLVFYPEIVGFIEEEK-DKFPTVRVQYVFNSPPKLIMLDEEG 130
              ++ TY+ AILE C  K   YP+I  FI+  +  KFP ++++YV    P + +LD  G
Sbjct: 4   QPAAQRTYAKAILEVCTCKFRAYPQIQAFIQSGRPAKFPNLQIKYVRGLDPVVKLLDASG 63

Query: 131 QHKETIRIDNWKREHMLQFLQEKVKPTSASA 161
           + +ET+ I  W  + + +F +  +    A  
Sbjct: 64  KVQETLSITKWNTDTVEEFFETHLAKDGAGK 94

>d2a2pa1 c.47.1.23 (A:25-144) Selenoprotein M {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Selenoprotein W-related
domain: Selenoprotein M
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (252), Expect = 6e-29
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 79  YSGAILEACMR-KLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETIR 137
            +   +E C   +L    E+  F+ E+   +  + ++++  + P+L++L    Q  E I 
Sbjct: 13  LARGRVETCGGCQLNRLKEVKAFVTEDIQLYHNLVMKHLPGADPELVLLSRNYQELERIP 72

Query: 138 IDNWKREHMLQFLQEK 153
           +    R+ +   +QE 
Sbjct: 73  LSQMTRDEINALVQEL 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d2a4ha1	117	Selenoprotein sep15 {Drosophila melanogaster [TaxI	100.0
d2a2pa1	120	Selenoprotein M {Mouse (Mus musculus) [TaxId: 1009	99.97
d1s3aa1	85	NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {	96.25
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	91.58
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	90.44
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	86.81
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	84.96
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	83.02
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	80.62
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	80.39
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	80.12

>d2a4ha1 c.47.1.23 (A:62-178) Selenoprotein sep15 {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Selenoprotein W-related
domain: Selenoprotein sep15
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=1.8e-36  Score=228.58  Aligned_cols=85  Identities=33%  Similarity=0.670  Sum_probs=79.4

Q ss_pred             ccccceeEEEEecccccccchhhhhhhhhh-ccCCCeEEEEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhc
Q 031251           76 KITYSGAILEACMRKLVFYPEIVGFIEEEK-DKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKV  154 (163)
Q Consensus        76 k~~y~~A~LevC~ckL~~~PeVk~FV~~~~-~~f~~L~vkyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL  154 (163)
                      +++||+|+||||+|||++||||++||+++. .+||||+|+|++|+||+|+|+|++|+++|+|+|++|+||+|+|||.+||
T Consensus         8 ~~~Y~~AilEvC~ckL~~~Pevk~FI~~d~p~~fpnl~vkyv~Ga~P~L~L~D~~g~~~E~l~I~kw~~D~i~efL~~~l   87 (117)
T d2a4ha1           8 QRTYAKAILEVCTCKFRAYPQIQAFIQSGRPAKFPNLQIKYVRGLDPVVKLLDASGKVQETLSITKWNTDTVEEFFETHL   87 (117)
T ss_dssp             SCCCSCBEEECCSCTTTTCTTHHHHHHHTTGGGCTTBCCCCCSSCCCEEEECCSSSCCSEEEECSSSSCSHHHHHHHHHS
T ss_pred             hccccceEEEEehhhhccCHHHHHHHhcchhhhCCCceEEEecCCCCEEEEEcCCCCEEEEEecccCCHHHHHHHHHHHH
Confidence            349999999999999999999999999665 5899999999999999999999999999999999999999999999999


Q ss_pred             CCCccc
Q 031251          155 KPTSAS  160 (163)
Q Consensus       155 ~~~~~~  160 (163)
                      ++..+.
T Consensus        88 ~~~~~~   93 (117)
T d2a4ha1          88 AKDGAG   93 (117)
T ss_dssp             CCCCSC
T ss_pred             hhhccc
Confidence            885543

>d2a2pa1 c.47.1.23 (A:25-144) Selenoprotein M {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Selenoprotein W-related
domain: Selenoprotein M
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.7e-31  Score=200.94  Aligned_cols=79  Identities=19%  Similarity=0.322  Sum_probs=76.0

Q ss_pred             ccccccceeEEEEec-ccccccchhhhhhhhhhccCCCeEEEEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHh
Q 031251           74 MSKITYSGAILEACM-RKLVFYPEIVGFIEEEKDKFPTVRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQE  152 (163)
Q Consensus        74 ~~k~~y~~A~LevC~-ckL~~~PeVk~FV~~~~~~f~~L~vkyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~  152 (163)
                      ..+ +|++|+||+|+ |+|++||||++||+++.++||||+|+|++|++|+|+|+|++|+++|+|+|++|++|+|++||.+
T Consensus         9 ~~~-~~~rA~lE~C~gCkL~~~PeVkaFI~ed~p~ypnl~vKyv~Ga~P~LvL~D~~ge~vE~i~Iekw~~deI~~~L~E   87 (120)
T d2a2pa1           9 RLR-GLARGRVETCGGCQLNRLKEVKAFVTEDIQLYHNLVMKHLPGADPELVLLSRNYQELERIPLSQMTRDEINALVQE   87 (120)
T ss_dssp             HHT-TCCEEEEEEETTCCCSTTHHHHHHTTTHHHHBTTEEEEEESSCCCEEEEECSSSCCCEEEECSSSCHHHHHHHHHH
T ss_pred             hhh-hcceeEEEeCCCcccccCHHHHHHHHhhhhhCCceEEEecCCCCCEEEEecCCCCEEEEEecccCCHHHHHHHHHH
Confidence            345 89999999996 9999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             h
Q 031251          153 K  153 (163)
Q Consensus       153 k  153 (163)
                      |
T Consensus        88 k   88 (120)
T d2a2pa1          88 L   88 (120)
T ss_dssp             H
T ss_pred             c
Confidence            7

>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Mitochondrial ribosomal protein L51/S25/CI-B8 domain
domain: NADH-ubiquinone oxidoreductase b8 subunit, CI-B8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0056  Score=41.24  Aligned_cols=65  Identities=15%  Similarity=0.228  Sum_probs=52.0

Q ss_pred             cccc-ccchhhhhhhhhhcc----CCC--eEEEEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhc
Q 031251           89 RKLV-FYPEIVGFIEEEKDK----FPT--VRVQYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKV  154 (163)
Q Consensus        89 ckL~-~~PeVk~FV~~~~~~----f~~--L~vkyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL  154 (163)
                      |+-+ ....+..||+.+.+.    .|+  +.++..+|..|.|...-.+| ....|++.+.+.++|.+-|..-+
T Consensus        10 c~~~~sS~G~R~Fi~~~l~~~~~~NP~v~i~v~~~~~~~P~l~a~y~nG-~e~~i~l~n~~~~eI~~~l~~L~   81 (85)
T d1s3aa1          10 CQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFG-QETNVPLNNFSADQVTRALENVL   81 (85)
T ss_dssp             CSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCCSSSCEEEEEESSC-CEEEEECTTCCHHHHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHHHhHHHHHHHCCCceEEEEEcCCCCCEEEEEEcCC-cEEEEECCCCCHHHHHHHHHHHH
Confidence            4444 457899999976444    477  45578888999999999999 66699999999999999887654

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=91.58  E-value=0.055  Score=36.17  Aligned_cols=36  Identities=19%  Similarity=0.437  Sum_probs=30.0

Q ss_pred             CCCCeEEEecCCCCeeeEEecCC-CCHHHHHHHHHhh
Q 031251          118 NSPPKLIMLDEEGQHKETIRIDN-WKREHMLQFLQEK  153 (163)
Q Consensus       118 Ga~P~L~LlD~~g~~~E~i~I~~-W~~D~I~efL~~k  153 (163)
                      ..-|+++++|.+|+....-++.+ ++.+++.++|++|
T Consensus        81 ~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~~  117 (117)
T d2fwha1          81 LGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR  117 (117)
T ss_dssp             CSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred             hhceEEEEEeCCCcEEecccccccCCHHHHHHHHhcC
Confidence            45689999999998777666665 6999999999986

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.44  E-value=0.35  Score=32.81  Aligned_cols=64  Identities=8%  Similarity=0.151  Sum_probs=43.7

Q ss_pred             ccccccchhhhhhhhhhccCCCeEEEEe-------------------cC-CCCeEEEecCCCCeeeEEec-CCCCHHHHH
Q 031251           89 RKLVFYPEIVGFIEEEKDKFPTVRVQYV-------------------FN-SPPKLIMLDEEGQHKETIRI-DNWKREHML  147 (163)
Q Consensus        89 ckL~~~PeVk~FV~~~~~~f~~L~vkyv-------------------~G-a~P~L~LlD~~g~~~E~i~I-~~W~~D~I~  147 (163)
                      ||   .|+.++|-+.-.+..+++.+--+                   .+ .-|+++++...+.....+.- ..++.|+|.
T Consensus        34 ck---~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~  110 (122)
T d2c0ga2          34 EK---HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLK  110 (122)
T ss_dssp             HH---HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEEEEESSSSSSEEECCTTSCCCHHHHH
T ss_pred             cc---CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCCCcEEEEeCCcccccccccCCCCCHHHHH
Confidence            66   58888887765555555433211                   22 47999999876655555544 458999999


Q ss_pred             HHHHhhcC
Q 031251          148 QFLQEKVK  155 (163)
Q Consensus       148 efL~~kL~  155 (163)
                      +||.++.+
T Consensus       111 ~fv~~~~~  118 (122)
T d2c0ga2         111 AFVSANTP  118 (122)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHhcC
Confidence            99999865

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=86.81  E-value=0.26  Score=35.09  Aligned_cols=60  Identities=17%  Similarity=0.195  Sum_probs=42.8

Q ss_pred             chhhhhhhhhhccCCCeE------------EEEecCCCCeEEEecCCCCeeeEEe-cCCCCHHHHHHHHHhhc
Q 031251           95 PEIVGFIEEEKDKFPTVR------------VQYVFNSPPKLIMLDEEGQHKETIR-IDNWKREHMLQFLQEKV  154 (163)
Q Consensus        95 PeVk~FV~~~~~~f~~L~------------vkyv~Ga~P~L~LlD~~g~~~E~i~-I~~W~~D~I~efL~~kL  154 (163)
                      .+++.|++++.-.|+.+-            ..|-...-|...++|.+|++..++. -..|+.+++.++|...|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         103 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             THHHHHHHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             hhhhhhHhhhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence            369999997765544321            1122234589999999999988774 45799999999998765

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.96  E-value=0.082  Score=35.11  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=25.7

Q ss_pred             CCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhc
Q 031251          119 SPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKV  154 (163)
Q Consensus       119 a~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL  154 (163)
                      +-|+++++ .+|++..++.  +.+.++|.++|++-|
T Consensus        73 ~~Pt~~~~-~~G~~v~~~~--G~~~~~l~~~i~~~l  105 (105)
T d2ifqa1          73 CMPTFQFF-KKGQKVGEFS--GANKEKLEATINELV  105 (105)
T ss_dssp             BSSEEEEE-ETTEEEEEEE--SCCHHHHHHHHHHHC
T ss_pred             EEEEEEEE-ECCEEEEEEe--CCCHHHHHHHHHhhC
Confidence            56888887 6898887654  789999999998643

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.02  E-value=0.11  Score=35.10  Aligned_cols=33  Identities=15%  Similarity=0.407  Sum_probs=26.2

Q ss_pred             CCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhc
Q 031251          119 SPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKV  154 (163)
Q Consensus       119 a~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL  154 (163)
                      .-|+++++ .+|+..+++.  +-+.+.|.+++.+.|
T Consensus        81 ~~Pt~~~~-~~G~~v~~~~--G~~~~~l~~~i~k~l  113 (114)
T d1xfla_          81 AMPTFMFL-KEGKILDKVV--GAKKDELQSTIAKHL  113 (114)
T ss_dssp             SSSEEEEE-ETTEEEEEEE--SCCHHHHHHHHHHHC
T ss_pred             eeEEEEEE-ECCEEEEEEe--CcCHHHHHHHHHHhh
Confidence            45677777 7998888765  558999999999887

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.62  E-value=0.44  Score=32.39  Aligned_cols=59  Identities=8%  Similarity=0.202  Sum_probs=42.3

Q ss_pred             cchhhhhhhhhhccCCCe-----EE--EEecCCCCeEEEecCCCCeeeEEe-cCCCCHHHHHHHHHh
Q 031251           94 YPEIVGFIEEEKDKFPTV-----RV--QYVFNSPPKLIMLDEEGQHKETIR-IDNWKREHMLQFLQE  152 (163)
Q Consensus        94 ~PeVk~FV~~~~~~f~~L-----~v--kyv~Ga~P~L~LlD~~g~~~E~i~-I~~W~~D~I~efL~~  152 (163)
                      ..++++|++++...||.+     ++  .|-...-|..+++|.+|+...... +..|+.|++.+-|.+
T Consensus        67 ~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          67 VGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             HHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             hhhhhhhhhhhccccceeeCchHHHHHHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence            458999999887777643     11  133335699999999998765433 457999999887764

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=80.39  E-value=0.87  Score=30.67  Aligned_cols=60  Identities=18%  Similarity=0.437  Sum_probs=40.1

Q ss_pred             chhhhhhhhhhccCCCe-----EE--EEecCCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhcCC
Q 031251           95 PEIVGFIEEEKDKFPTV-----RV--QYVFNSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKVKP  156 (163)
Q Consensus        95 PeVk~FV~~~~~~f~~L-----~v--kyv~Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL~~  156 (163)
                      .++++|++++.-.||-+     ++  .|....-|.+.++|.+|+..-++. --.+.+.++++| +.|+|
T Consensus        71 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~-G~~~~~~~~~~l-~~lkp  137 (137)
T d1st9a_          71 IAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVT-GTMTESMIHDYM-NLIKP  137 (137)
T ss_dssp             HHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEEE-SCCCHHHHHHHH-HHHCC
T ss_pred             hhHHHHHHHcCCCccccccccchhhhhhhccccceEEEECCCCEEEEEEE-CCCCHHHHHHHH-HhhCc
Confidence            47999998765555532     11  233345599999999998766643 345789999987 44443

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.12  E-value=0.17  Score=33.66  Aligned_cols=34  Identities=15%  Similarity=0.365  Sum_probs=26.4

Q ss_pred             CCCCeEEEecCCCCeeeEEecCCCCHHHHHHHHHhhc
Q 031251          118 NSPPKLIMLDEEGQHKETIRIDNWKREHMLQFLQEKV  154 (163)
Q Consensus       118 Ga~P~L~LlD~~g~~~E~i~I~~W~~D~I~efL~~kL  154 (163)
                      -..|+++++ .+|+...++.  +-+.++|++||.++|
T Consensus        78 ~~~Pt~~~~-~~G~~v~~~~--G~~~~~l~~~I~~~l  111 (111)
T d1xwaa_          78 SSMPTFVFL-KNGVKVEEFA--GANAKRLEDVIKANI  111 (111)
T ss_dssp             CSSSEEEEE-ETTEEEEEEE--SCCHHHHHHHHHHTC
T ss_pred             ccccEEEEE-ECCEEEEEEe--CCCHHHHHHHHHhcC
Confidence            356888887 5887777665  668899999999875