Citrus Sinensis ID: 031256

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MLASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD
Secondary Structure (PSIPRED)
cccccccccEEEEEccccEEEEEEEccccHHHHHHHHHHHHccccccccEEEcccccEEEcccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEccccccccccccEEEEEEccHHHHHHHHccccccccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEccccEEEEEccccccHHHHHHHHHHHcccccccEccEEEcccEEEEcccccccccccEccEccEcccccHccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEcccHHHHHHHHcccEcccccEcccEEEEEEEEEE
Coil and Loop (DISEMBL)
mlasddgppevtletsmgsFTVELyykhsprtcrnfaelsrrgyynnskfHRIIKDFIvqggdptgtgrggdsiyghvfedeikpelkhtgAGILSmanagpntngsqffitlapashldgkhtifgRVCRGMEVIKRlgsvqtdkddrpihdvKILRTSVKD
Flexible Loop (DISEMBL)
mlasddgppevtletsmgSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRlgsvqtdkddrpihdvkilrtsvkd
Low Complexity Region (SEG)
MLASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQggdptgtgrggdSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD
Disordered region (IsUnstruct)
*****************GSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSV*********************
Disordered Region (DISOPRED)
************LETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD
Disordered Region (DISEMBL)
**********VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD
Disordered Region (DISPRO)
******GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q9D0W5	166	Peptidyl-prolyl cis-trans	yes	no	0.932	0.915	0.710	2e-64
Q9Y3C6	166	Peptidyl-prolyl cis-trans	yes	no	0.932	0.915	0.703	6e-64
Q5E992	166	Peptidyl-prolyl cis-trans	yes	no	0.932	0.915	0.703	6e-64
Q5ASQ0	162	Peptidyl-prolyl cis-trans	yes	no	0.932	0.938	0.717	8e-62
Q7SF72	163	Peptidyl-prolyl cis-trans	N/A	no	0.932	0.932	0.710	8e-62
Q4WCR3	161	Peptidyl-prolyl cis-trans	yes	no	0.932	0.944	0.717	2e-61
Q8X191	162	Peptidyl-prolyl cis-trans	yes	no	0.932	0.938	0.710	8e-61
Q2U6U0	161	Peptidyl-prolyl cis-trans	yes	no	0.932	0.944	0.703	1e-60
P0CP84	174	Peptidyl-prolyl cis-trans	yes	no	0.981	0.919	0.662	5e-59
P0CP85	174	Peptidyl-prolyl cis-trans	N/A	no	0.981	0.919	0.662	5e-59

>sp|Q9D0W5|PPIL1_MOUSE Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus musculus GN=Ppil1 PE=2 SV=1

 Score =  244 bits (622), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 131/152 (86%)

Query: 8   PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGT 67
           PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++QGGDPTGT
Sbjct: 11  PPNVYLETSMGVIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70

Query: 68  GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
           GRGG SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct: 71  GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130

Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 159
           RVC+G+ ++ R+G V+T+  DRP+ DVKIL+ 
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKILKA 162

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.
Mus musculus (taxid: 10090)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9Y3C6|PPIL1_HUMAN Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo sapiens GN=PPIL1 PE=1 SV=1

 Score =  242 bits (618), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 131/152 (86%)

Query: 8   PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGT 67
           PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++QGGDPTGT
Sbjct: 11  PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70

Query: 68  GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
           GRGG SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct: 71  GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130

Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 159
           RVC+G+ ++ R+G V+T+  DRP+ DVKI++ 
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5E992|PPIL1_BOVIN Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos taurus GN=PPIL1 PE=2 SV=1

 Score =  242 bits (618), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 131/152 (86%)

Query: 8   PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGT 67
           PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++QGGDPTGT
Sbjct: 11  PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70

Query: 68  GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
           GRGG SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct: 71  GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130

Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 159
           RVC+G+ ++ R+G V+T+  DRP+ DVKI++ 
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5ASQ0|PPIL1_EMENI Peptidyl-prolyl cis-trans isomerase-like 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cyp1 PE=3 SV=1

 Score =  235 bits (600), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 129/152 (84%)

Query: 10  EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGR 69
           +VT +TSMGSFTVELY  H+P+TC+NFA L++RGYYNN  FHRII +F+VQ GDPTGTGR
Sbjct: 4   DVTFDTSMGSFTVELYNSHAPKTCKNFATLAQRGYYNNVIFHRIIPNFMVQTGDPTGTGR 63

Query: 70  GGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
           GG SIYG  FEDEI+ +LKHTGAGILSMAN+GPNTNGSQFFITLAP   LDGKHTIFGRV
Sbjct: 64  GGSSIYGEKFEDEIRSDLKHTGAGILSMANSGPNTNGSQFFITLAPTPWLDGKHTIFGRV 123

Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
             GM +I+R+G V+T+ +DRP+ +VKILR  V
Sbjct: 124 KSGMRIIQRMGLVKTNNEDRPLDEVKILRAKV 155

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7SF72|PPIL1_NEUCR Peptidyl-prolyl cis-trans isomerase-like 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyp-1 PE=3 SV=2

 Score =  235 bits (600), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 130/152 (85%)

Query: 10  EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGR 69
           +V +ET+MG+FT+ELY  H+P+TC+NFA L+ RGYY+++ FHRIIKDF++QGGDPTGTGR
Sbjct: 4   DVAVETTMGTFTLELYTNHAPKTCKNFATLADRGYYDSTVFHRIIKDFMIQGGDPTGTGR 63

Query: 70  GGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
           GG SIYG  FEDEI P LKHTGAG+LSMANAGPNTNGSQFFITLAP   LDGKHTIFGRV
Sbjct: 64  GGSSIYGEKFEDEIHPGLKHTGAGVLSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRV 123

Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
            +GM VI+R+G V TDK+DRP  +VKI++  V
Sbjct: 124 KKGMGVIRRMGMVPTDKEDRPATEVKIVKARV 155

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4WCR3|PPIL1_ASPFU Peptidyl-prolyl cis-trans isomerase-like 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cyp1 PE=3 SV=1

 Score =  234 bits (597), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 128/152 (84%)

Query: 10  EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGR 69
           +V  +TSMGSFTVELY +H+P+TCRNFA L++RGYYNN  FHRII +F+VQ GDPTGTGR
Sbjct: 4   DVVFDTSMGSFTVELYNEHAPKTCRNFATLAQRGYYNNVIFHRIIPNFMVQTGDPTGTGR 63

Query: 70  GGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
           GG SIYG  FEDEI P LKHTGAG+LSMAN+GPNTNGSQFFITLAP   LDGKHTIFGRV
Sbjct: 64  GGSSIYGEKFEDEIHPGLKHTGAGVLSMANSGPNTNGSQFFITLAPTPWLDGKHTIFGRV 123

Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
             GM VI+R+G V+T+ +DRP+ +VKI+R  V
Sbjct: 124 KSGMRVIQRMGLVKTNSEDRPVDEVKIIRAKV 155

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8X191|PPIL1_ASPNG Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspergillus niger GN=cypC PE=3 SV=1

 Score =  232 bits (591), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 125/152 (82%)

Query: 10  EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGR 69
           +V  +TSMGSFTVELY  H+P+TC+NFA L++RGYYNN  FHRII +F+VQ GDPTGTGR
Sbjct: 4   DVAFDTSMGSFTVELYNAHAPKTCKNFATLAQRGYYNNVIFHRIIPNFMVQTGDPTGTGR 63

Query: 70  GGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
           GG SIYG  FEDEI P LKHTGAGILSMAN+GPN NGSQFFITLAP   LDGKHTIFGRV
Sbjct: 64  GGSSIYGEKFEDEINPNLKHTGAGILSMANSGPNNNGSQFFITLAPQPWLDGKHTIFGRV 123

Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
             GM VI+R+G V+T+ +DRP+  VKILR  +
Sbjct: 124 KSGMRVIQRMGLVKTNSEDRPVDGVKILRARI 155

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Aspergillus niger (taxid: 5061)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q2U6U0|PPIL1_ASPOR Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cyp1 PE=3 SV=1

 Score =  231 bits (590), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 128/152 (84%)

Query: 10  EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGR 69
           +V  +TSMGSFTVELY  H+P+TC+NFA L++RGYYNN  FHRII +F+VQ GDPTGTGR
Sbjct: 4   DVAFDTSMGSFTVELYNSHAPKTCKNFATLAQRGYYNNVIFHRIIPNFMVQTGDPTGTGR 63

Query: 70  GGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
           GG SIYG  FEDEI+ +LKHTGAGILSMAN+GPNTNGSQFF+TLAP   LDGKHTIFGRV
Sbjct: 64  GGSSIYGEKFEDEIRADLKHTGAGILSMANSGPNTNGSQFFVTLAPTPWLDGKHTIFGRV 123

Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
             GM VI+R+G V+T+ +DRP+ +VKI+R  V
Sbjct: 124 KSGMRVIQRMGLVKTNGEDRPVDEVKIIRARV 155

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0CP84|PPIL1_CRYNJ Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CYP1 PE=3 SV=1

 Score =  226 bits (576), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 106/160 (66%), Positives = 127/160 (79%)

Query: 4   SDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGD 63
           S   P  VT +TS+GSFTVELY  H+P+TC NFA+L+ RGYYN   FHRII +F++QGGD
Sbjct: 2   SGPSPTYVTFDTSVGSFTVELYTAHAPKTCNNFAKLAERGYYNGVIFHRIIPNFMIQGGD 61

Query: 64  PTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKH 123
           PTGTGRGG SIYG  F DEI PEL+  GAGIL+MAN+GPNTNGSQFFIT AP  +LDGKH
Sbjct: 62  PTGTGRGGTSIYGDRFADEIHPELRFVGAGILAMANSGPNTNGSQFFITCAPTPYLDGKH 121

Query: 124 TIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           TIFGRV  GM+ I+RL +V+TDKDDRP+ ++KI R  + D
Sbjct: 122 TIFGRVSSGMKTIQRLEAVRTDKDDRPVEEIKIHRARLGD 161

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0CP85|PPIL1_CRYNB Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CYP1 PE=3 SV=1

 Score =  226 bits (576), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 106/160 (66%), Positives = 127/160 (79%)

Query: 4   SDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGD 63
           S   P  VT +TS+GSFTVELY  H+P+TC NFA+L+ RGYYN   FHRII +F++QGGD
Sbjct: 2   SGPSPTYVTFDTSVGSFTVELYTAHAPKTCNNFAKLAERGYYNGVIFHRIIPNFMIQGGD 61

Query: 64  PTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKH 123
           PTGTGRGG SIYG  F DEI PEL+  GAGIL+MAN+GPNTNGSQFFIT AP  +LDGKH
Sbjct: 62  PTGTGRGGTSIYGDRFADEIHPELRFVGAGILAMANSGPNTNGSQFFITCAPTPYLDGKH 121

Query: 124 TIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           TIFGRV  GM+ I+RL +V+TDKDDRP+ ++KI R  + D
Sbjct: 122 TIFGRVSSGMKTIQRLEAVRTDKDDRPVEEIKIHRARLGD 161

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
225440807	166	PREDICTED: peptidyl-prolyl cis-trans iso	0.987	0.969	0.888	4e-80
449462940	164	PREDICTED: peptidyl-prolyl cis-trans iso	1.0	0.993	0.871	1e-78
255579379	164	Peptidyl-prolyl cis-trans isomerase cypE	0.987	0.981	0.869	3e-78
363807377	164	uncharacterized protein LOC100786302 [Gl	1.0	0.993	0.878	4e-78
351724221	165	uncharacterized protein LOC100500406 [Gl	0.987	0.975	0.863	2e-77
388518797	164	unknown [Lotus japonicus]	0.981	0.975	0.875	3e-77
224138430	164	predicted protein [Populus trichocarpa]	0.981	0.975	0.868	7e-77
217070990	164	unknown [Medicago truncatula] gi|3885155	1.0	0.993	0.871	9e-77
388498910	164	unknown [Medicago truncatula]	1.0	0.993	0.865	3e-76
115477813	164	Os08g0559400 [Oryza sativa Japonica Grou	0.987	0.981	0.832	1e-75

>gi|225440807|ref|XP_002281866.1| PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1 [Vitis vinifera] gi|297740153|emb|CBI30335.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (772), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 143/161 (88%), Positives = 151/161 (93%)

Query: 3   ASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGG 62
           ++D G PEVTLETSMGSFTVELYYKH+PRTCRNF ELSRRGYY+N KFHRIIKDFIVQGG
Sbjct: 4   SADGGAPEVTLETSMGSFTVELYYKHAPRTCRNFLELSRRGYYDNVKFHRIIKDFIVQGG 63

Query: 63  DPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGK 122
           DPTGTGRGG+SIYG  FEDEIKPELKHTGAGILSMANAGPN+NGSQFFITLAPA  LDGK
Sbjct: 64  DPTGTGRGGESIYGSKFEDEIKPELKHTGAGILSMANAGPNSNGSQFFITLAPAQSLDGK 123

Query: 123 HTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           HTIFGRVCRGME+IKRLGSVQTD  DRPIHDVKILRT+VKD
Sbjct: 124 HTIFGRVCRGMEIIKRLGSVQTDNTDRPIHDVKILRTAVKD 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462940|ref|XP_004149193.1| PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1-like [Cucumis sativus] gi|449500879|ref|XP_004161218.1| PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1-like [Cucumis sativus]

 Score =  296 bits (759), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 143/164 (87%), Positives = 152/164 (92%), Gaps = 1/164 (0%)

Query: 1   MLASDDG-PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIV 59
           M AS +G PPEVTLETSMGSFTVELY+KH+PRTCRNF ELSRRGYY+N KFHRIIKDFIV
Sbjct: 1   MWASAEGGPPEVTLETSMGSFTVELYFKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIV 60

Query: 60  QGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHL 119
           QGGDPTGTGRGG+SIYG  FEDEIKPELKHTGAGILSMANAGP+TNGSQFFITLAP   L
Sbjct: 61  QGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSL 120

Query: 120 DGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           DGKH+IFGRVCRGME+IKRLGSVQTD +DRPIHDVKILR SVKD
Sbjct: 121 DGKHSIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRASVKD 164

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579379|ref|XP_002530534.1| Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis] gi|223529938|gb|EEF31866.1| Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]

 Score =  296 bits (757), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 140/161 (86%), Positives = 151/161 (93%)

Query: 3   ASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGG 62
           +S+ G PEVTLETSMGSFTVELYYKH+P+TCRNF ELSRRGYY+N KFHRIIKDFIVQGG
Sbjct: 4   SSEGGAPEVTLETSMGSFTVELYYKHAPKTCRNFLELSRRGYYDNVKFHRIIKDFIVQGG 63

Query: 63  DPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGK 122
           DPTGTGRGG+SIYG  FEDEIKPELKHTGAGI+SMANAGPNTNGSQFFITL+P   LDGK
Sbjct: 64  DPTGTGRGGESIYGPKFEDEIKPELKHTGAGIISMANAGPNTNGSQFFITLSPTPTLDGK 123

Query: 123 HTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           HTIFGRVCRGMEV+KRLGS+QTD +DRPIHDVKILRTSVKD
Sbjct: 124 HTIFGRVCRGMEVLKRLGSIQTDNNDRPIHDVKILRTSVKD 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807377|ref|NP_001242378.1| uncharacterized protein LOC100786302 [Glycine max] gi|255640340|gb|ACU20458.1| unknown [Glycine max]

 Score =  295 bits (756), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 144/164 (87%), Positives = 150/164 (91%), Gaps = 1/164 (0%)

Query: 1   MLASDDG-PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIV 59
           M AS +G  PEVTLETSMGSFTVELYYKH+PRTCRNF ELSRRGYY+N KFHRIIKDFIV
Sbjct: 1   MWASAEGGAPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIV 60

Query: 60  QGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHL 119
           QGGDPTGTGRGG+SIYG  FEDEIK ELKHTGAGILSMANAGPNTNGSQFFITLAP   L
Sbjct: 61  QGGDPTGTGRGGESIYGAKFEDEIKRELKHTGAGILSMANAGPNTNGSQFFITLAPCPSL 120

Query: 120 DGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           DGKHTIFGRVCRGME+IKRLGS QTD +DRPIHDVKILRTSVKD
Sbjct: 121 DGKHTIFGRVCRGMEIIKRLGSAQTDNNDRPIHDVKILRTSVKD 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724221|ref|NP_001237562.1| uncharacterized protein LOC100500406 [Glycine max] gi|255630248|gb|ACU15479.1| unknown [Glycine max]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/161 (86%), Positives = 149/161 (92%)

Query: 3   ASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGG 62
           A++ G PEVTLETSMGSFT ELYYKH+PRTCRNF ELSRRGYY+N KFHRIIKDFIVQGG
Sbjct: 5   AAEGGAPEVTLETSMGSFTFELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGG 64

Query: 63  DPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGK 122
           DPTGTGRGG+SIYG  FEDEIK ELKHTGAGILSMANAGPNTNGSQFFITLAP   LDGK
Sbjct: 65  DPTGTGRGGESIYGAKFEDEIKRELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGK 124

Query: 123 HTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           HTIFGRVCRGME++KRLGS+QTD +DRPIH+VKILRTSVKD
Sbjct: 125 HTIFGRVCRGMEIMKRLGSIQTDNNDRPIHNVKILRTSVKD 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518797|gb|AFK47460.1| unknown [Lotus japonicus]

 Score =  292 bits (747), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 140/160 (87%), Positives = 148/160 (92%)

Query: 4   SDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGD 63
           ++ G PEVTLETSMGSFTVELYYKH+PRT RNF ELSRRGYY+N KFHRIIKDFIVQGGD
Sbjct: 5   AEGGSPEVTLETSMGSFTVELYYKHAPRTSRNFIELSRRGYYDNVKFHRIIKDFIVQGGD 64

Query: 64  PTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKH 123
           PTGTGRGG+SIYG  FEDEI+ ELKHTGAGILSMANAGPNTNGSQFFITLAP   LDGKH
Sbjct: 65  PTGTGRGGESIYGAKFEDEIRQELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKH 124

Query: 124 TIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           TIFGRVCRGME+IKRLGSVQTD +DRPIHDVKILRTSVKD
Sbjct: 125 TIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRTSVKD 164

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138430|ref|XP_002322812.1| predicted protein [Populus trichocarpa] gi|222867442|gb|EEF04573.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 139/160 (86%), Positives = 146/160 (91%)

Query: 4   SDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGD 63
           ++ G PEVTLETSMG FTVELYYKH+PRTCRNF ELSRRGYY+N KFHRIIKDFIVQGGD
Sbjct: 5   AEGGAPEVTLETSMGPFTVELYYKHAPRTCRNFLELSRRGYYDNVKFHRIIKDFIVQGGD 64

Query: 64  PTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKH 123
           PTGTGRGG SIYG  FEDEI PELKHTGAGILSMANAGPNTNGSQFFITL+P   LDGKH
Sbjct: 65  PTGTGRGGKSIYGDKFEDEINPELKHTGAGILSMANAGPNTNGSQFFITLSPTPSLDGKH 124

Query: 124 TIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           TIFGRVCRGME+IKRLGSVQTD +DRPIHDVKILR SVKD
Sbjct: 125 TIFGRVCRGMEIIKRLGSVQTDNNDRPIHDVKILRASVKD 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217070990|gb|ACJ83855.1| unknown [Medicago truncatula] gi|388515503|gb|AFK45813.1| unknown [Medicago truncatula]

 Score =  290 bits (743), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 143/164 (87%), Positives = 149/164 (90%), Gaps = 1/164 (0%)

Query: 1   MLASDDG-PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIV 59
           M AS +G  PEVTLETSMGSFTVELYYKH+PRT RNF ELSRRGYY+N KFHRIIKDFIV
Sbjct: 1   MWASAEGGAPEVTLETSMGSFTVELYYKHAPRTSRNFIELSRRGYYDNVKFHRIIKDFIV 60

Query: 60  QGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHL 119
           QGGDPTGTGRGG+SIYG  FEDEIK ELKHTGAGILSMANAGPNTNGSQFFITLAP   L
Sbjct: 61  QGGDPTGTGRGGESIYGAKFEDEIKQELKHTGAGILSMANAGPNTNGSQFFITLAPCPSL 120

Query: 120 DGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           DGKHTIFGRV RGME+IKRLGSVQTD +DRPIHDVKILRTSVKD
Sbjct: 121 DGKHTIFGRVSRGMEIIKRLGSVQTDNNDRPIHDVKILRTSVKD 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498910|gb|AFK37521.1| unknown [Medicago truncatula]

 Score =  289 bits (740), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 142/164 (86%), Positives = 149/164 (90%), Gaps = 1/164 (0%)

Query: 1   MLASDDG-PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIV 59
           M AS +G  PEVTL+TSMGSFTVELYYKH+PRT RNF ELSRRGYY+N KFHRIIKDFIV
Sbjct: 1   MWASAEGGAPEVTLKTSMGSFTVELYYKHAPRTSRNFIELSRRGYYDNVKFHRIIKDFIV 60

Query: 60  QGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHL 119
           QGGDPTGTGRGG+SIYG  FEDEIK ELKHTGAGILSMANAGPNTNGSQFFITLAP   L
Sbjct: 61  QGGDPTGTGRGGESIYGAKFEDEIKQELKHTGAGILSMANAGPNTNGSQFFITLAPCPSL 120

Query: 120 DGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           DGKHTIFGRV RGME+IKRLGSVQTD +DRPIHDVKILRTSVKD
Sbjct: 121 DGKHTIFGRVSRGMEIIKRLGSVQTDNNDRPIHDVKILRTSVKD 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115477813|ref|NP_001062502.1| Os08g0559400 [Oryza sativa Japonica Group] gi|15076665|dbj|BAB62328.1| cyclophilin [Oryza sativa Japonica Group] gi|15076667|dbj|BAB62329.1| cyclophilin [Oryza sativa Japonica Group] gi|45736107|dbj|BAD13138.1| cyclophilin [Oryza sativa Japonica Group] gi|113624471|dbj|BAF24416.1| Os08g0559400 [Oryza sativa Japonica Group] gi|125604327|gb|EAZ43652.1| hypothetical protein OsJ_28276 [Oryza sativa Japonica Group]

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 148/161 (91%)

Query: 3   ASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGG 62
           ++D G PEVTLETSMG+FT+E+YYKH+P+TCRNF ELSRRGYY+N  FHRIIKDFIVQGG
Sbjct: 4   SADGGTPEVTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQGG 63

Query: 63  DPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGK 122
           DPTGTGRGG+SIYG  FEDEI+PELKHTGAGILSMANAGPNTNGSQFFITLAP   LDGK
Sbjct: 64  DPTGTGRGGESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGK 123

Query: 123 HTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           HTIFGRV +GME++KRLGSVQTDK DRPIH+VKILRT VKD
Sbjct: 124 HTIFGRVSKGMEIVKRLGSVQTDKSDRPIHEVKILRTVVKD 164

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2053491	164	AT2G36130 [Arabidopsis thalian	1.0	0.993	0.780	2e-63
FB|FBgn0035141	176	Cypl "Cyclophilin-like" [Droso	0.950	0.880	0.651	4.4e-52
MGI|MGI:1916066	166	Ppil1 "peptidylprolyl isomeras	0.926	0.909	0.642	7.2e-52
RGD|1309119	166	Ppil1 "peptidylprolyl isomeras	0.926	0.909	0.642	7.2e-52
UNIPROTKB|F1LUK7	165	Ppil1 "Peptidyl-prolyl cis-tra	0.926	0.915	0.642	7.2e-52
UNIPROTKB|Q5E992	166	PPIL1 "Peptidyl-prolyl cis-tra	0.926	0.909	0.635	1.2e-51
UNIPROTKB|E2RPE2	166	PPIL1 "Peptidyl-prolyl cis-tra	0.926	0.909	0.635	1.2e-51
UNIPROTKB|Q9Y3C6	166	PPIL1 "Peptidyl-prolyl cis-tra	0.926	0.909	0.635	1.2e-51
UNIPROTKB|F2Z542	166	PPIL1 "Uncharacterized protein	0.926	0.909	0.635	1.2e-51
ZFIN|ZDB-GENE-051009-1	166	ppil1 "peptidylprolyl isomeras	0.944	0.927	0.623	1.2e-51

TAIR|locus:2053491 AT2G36130 [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 128/164 (78%), Positives = 133/164 (81%)

Query:     1 MLASDDG-PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIV 59
             M A  +G PPEVTLETSMG FTVE+YYKHSPRTCRNF ELSRRGYY+N  FHRI+KDFIV
Sbjct:     1 MSARPEGSPPEVTLETSMGPFTVEMYYKHSPRTCRNFLELSRRGYYDNVLFHRIVKDFIV 60

Query:    60 QXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHL 119
             Q            SIYG  FEDEI  ELKHTGAGILSMANAGPNTNGSQFFITLAP   L
Sbjct:    61 QGGDPTGTGRGGESIYGSKFEDEINKELKHTGAGILSMANAGPNTNGSQFFITLAPQPSL 120

Query:   120 DGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
             DGKHTIFGRVCRGMEVIKRLGSVQTD  DRPIH+VKILRT V D
Sbjct:   121 DGKHTIFGRVCRGMEVIKRLGSVQTDNTDRPIHEVKILRTKVID 164

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

FB|FBgn0035141 Cypl "Cyclophilin-like" [Drosophila melanogaster (taxid:7227)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 101/155 (65%), Positives = 121/155 (78%)

Query:     8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
             P  VTLETSMG  TVELY+KH+P TCRNFAELSRRGYYNN  FHRII+DF++Q       
Sbjct:    20 PHFVTLETSMGEITVELYWKHAPNTCRNFAELSRRGYYNNVVFHRIIRDFMIQGGDPTGT 79

Query:    68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                  SIYG  F DE+  +L+HTGAGILSMAN+GP+TNGSQFFITLAP   LDGKHTIFG
Sbjct:    80 GRGGASIYGSEFADELHGDLRHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHTIFG 139

Query:   128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVK 162
             RV  GMEV+KR+G V+TDK+DRP+  ++I++  V+
Sbjct:   140 RVYTGMEVVKRIGMVETDKNDRPVDPLRIIKAKVE 174

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0048042 "regulation of post-mating oviposition" evidence=NAS

GO:0006457 "protein folding" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

MGI|MGI:1916066 Ppil1 "peptidylprolyl isomerase (cyclophilin)-like 1" [Mus musculus (taxid:10090)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 97/151 (64%), Positives = 120/151 (79%)

Query:     8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
             PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q       
Sbjct:    11 PPNVYLETSMGVIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70

Query:    68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                  SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct:    71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130

Query:   128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 158
             RVC+G+ ++ R+G V+T+  DRP+ DVKIL+
Sbjct:   131 RVCQGIGMVNRVGMVETNSQDRPVDDVKILK 161

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|1309119 Ppil1 "peptidylprolyl isomerase (cyclophilin)-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 97/151 (64%), Positives = 120/151 (79%)

Query:     8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
             PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q       
Sbjct:    11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70

Query:    68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                  SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct:    71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130

Query:   128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 158
             RVC+G+ ++ R+G V+T+  DRP+ DVKIL+
Sbjct:   131 RVCQGIGMVNRVGMVETNSQDRPVDDVKILK 161

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

UNIPROTKB|F1LUK7 Ppil1 "Peptidyl-prolyl cis-trans isomerase" [Rattus norvegicus (taxid:10116)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 97/151 (64%), Positives = 120/151 (79%)

Query:     8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
             PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q       
Sbjct:    10 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 69

Query:    68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                  SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct:    70 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 129

Query:   128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 158
             RVC+G+ ++ R+G V+T+  DRP+ DVKIL+
Sbjct:   130 RVCQGIGMVNRVGMVETNSQDRPVDDVKILK 160

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|Q5E992 PPIL1 "Peptidyl-prolyl cis-trans isomerase-like 1" [Bos taurus (taxid:9913)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 96/151 (63%), Positives = 120/151 (79%)

Query:     8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
             PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q       
Sbjct:    11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70

Query:    68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                  SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct:    71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130

Query:   128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 158
             RVC+G+ ++ R+G V+T+  DRP+ DVKI++
Sbjct:   131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIK 161

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|E2RPE2 PPIL1 "Peptidyl-prolyl cis-trans isomerase" [Canis lupus familiaris (taxid:9615)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 96/151 (63%), Positives = 120/151 (79%)

Query:     8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
             PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q       
Sbjct:    11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70

Query:    68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                  SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct:    71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130

Query:   128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 158
             RVC+G+ ++ R+G V+T+  DRP+ DVKI++
Sbjct:   131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIK 161

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q9Y3C6 PPIL1 "Peptidyl-prolyl cis-trans isomerase-like 1" [Homo sapiens (taxid:9606)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 96/151 (63%), Positives = 120/151 (79%)

Query:     8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
             PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q       
Sbjct:    11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70

Query:    68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                  SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct:    71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130

Query:   128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 158
             RVC+G+ ++ R+G V+T+  DRP+ DVKI++
Sbjct:   131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIK 161

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F2Z542 PPIL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 96/151 (63%), Positives = 120/151 (79%)

Query:     8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
             PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q       
Sbjct:    11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70

Query:    68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                  SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct:    71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130

Query:   128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 158
             RVC+G+ ++ R+G V+T+  DRP+ DVKI++
Sbjct:   131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIK 161

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

ZFIN|ZDB-GENE-051009-1 ppil1 "peptidylprolyl isomerase (cyclophilin)-like 1" [Danio rerio (taxid:7955)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 96/154 (62%), Positives = 122/154 (79%)

Query:     8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
             PP V+L+T+MG+  +ELY+ H+P+TC+NFAEL RRGYYN++KFHRIIKDF+VQ       
Sbjct:    11 PPTVSLDTTMGTIVLELYWNHAPKTCKNFAELGRRGYYNSTKFHRIIKDFMVQGGDPTGT 70

Query:    68 XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                  SIYG  FEDE  PELK TGAGIL+MANAGP+TNGSQFF++LAP   LDGKHTIFG
Sbjct:    71 GRGGASIYGKQFEDEFHPELKFTGAGILAMANAGPDTNGSQFFLSLAPTQWLDGKHTIFG 130

Query:   128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
             RVC+G+ V+ R+G V+T+  DRP+ D+KILR ++
Sbjct:   131 RVCQGIGVLNRIGMVETNSQDRPVDDIKILRVNL 164

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016853 "isomerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0C1I4	PPIL1_RHIO9	5, ., 2, ., 1, ., 8	0.7094	0.9079	0.8969	N/A	no
Q5E992	PPIL1_BOVIN	5, ., 2, ., 1, ., 8	0.7039	0.9325	0.9156	yes	no
Q4I1Y1	PPIL1_GIBZE	5, ., 2, ., 1, ., 8	0.6797	0.9386	0.9444	yes	no
Q9D0W5	PPIL1_MOUSE	5, ., 2, ., 1, ., 8	0.7105	0.9325	0.9156	yes	no
Q5ASQ0	PPIL1_EMENI	5, ., 2, ., 1, ., 8	0.7171	0.9325	0.9382	yes	no
Q7SF72	PPIL1_NEUCR	5, ., 2, ., 1, ., 8	0.7105	0.9325	0.9325	N/A	no
Q8X191	PPIL1_ASPNG	5, ., 2, ., 1, ., 8	0.7105	0.9325	0.9382	yes	no
Q9NI62	CYPE_DICDI	5, ., 2, ., 1, ., 8	0.6225	0.9202	0.9615	yes	no
Q4WCR3	PPIL1_ASPFU	5, ., 2, ., 1, ., 8	0.7171	0.9325	0.9440	yes	no
Q9Y3C6	PPIL1_HUMAN	5, ., 2, ., 1, ., 8	0.7039	0.9325	0.9156	yes	no
P0CP85	PPIL1_CRYNB	5, ., 2, ., 1, ., 8	0.6625	0.9815	0.9195	N/A	no
P0CP84	PPIL1_CRYNJ	5, ., 2, ., 1, ., 8	0.6625	0.9815	0.9195	yes	no
Q2U6U0	PPIL1_ASPOR	5, ., 2, ., 1, ., 8	0.7039	0.9325	0.9440	yes	no
P87051	PPIL1_SCHPO	5, ., 2, ., 1, ., 8	0.6418	0.9079	0.9548	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.976
4th Layer	5.2.1.8	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	3e-92
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	2e-71
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	6e-70
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	2e-68
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	7e-68
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	1e-65
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	3e-62
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	8e-59
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	2e-54
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	9e-53
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	5e-44
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	1e-41
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	3e-25
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	1e-20
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	2e-16
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	2e-16
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	3e-12

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  264 bits (675), Expect = 3e-92
 Identities = 108/147 (73%), Positives = 126/147 (85%), Gaps = 1/147 (0%)

Query: 12  TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGG 71
           TLET+MG  T+ELY+ H+P+TC+NF EL++RGYYN + FHR+IKDF++QGGDPTGTGRGG
Sbjct: 1   TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGG 60

Query: 72  DSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCR 131
            SIYG  FEDEI PELKHTGAGILSMANAGPNTNGSQFFITLAP   LDGKHTIFGRV +
Sbjct: 61  ASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSK 120

Query: 132 GMEVIKRLGSVQTDKDDRPIHDVKILR 158
           GM+VI+ +  VQT   DRPI +VKIL+
Sbjct: 121 GMKVIENMVEVQTQ-TDRPIDEVKILK 146

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  211 bits (540), Expect = 2e-71
 Identities = 82/151 (54%), Positives = 109/151 (72%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
           V L T+ G   +EL+   +P+ C NF +L ++GYY+ + FHR I++F++QGGDPTGTGRG
Sbjct: 2   VRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRG 61

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G+SI+G  F+DE KP L H G G+LSMAN+GPNTNGSQFFIT     HLDGKHT+FGRV 
Sbjct: 62  GESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVV 121

Query: 131 RGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
            G+E ++ + +V     DRP  ++KI  TSV
Sbjct: 122 GGLETLEAMENVPDPGTDRPKEEIKIEDTSV 152

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  207 bits (529), Expect = 6e-70
 Identities = 80/146 (54%), Positives = 105/146 (71%)

Query: 12  TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGG 71
            + T+ G   + L+ + +P+T  NF   +R GYYNN+ FHR+IK F++Q GDPTG G GG
Sbjct: 1   IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGG 60

Query: 72  DSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCR 131
           +SI+G  FEDE  P LKH     LSMANAGPNTNGSQFFIT      LD KHT+FGRV +
Sbjct: 61  ESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVK 120

Query: 132 GMEVIKRLGSVQTDKDDRPIHDVKIL 157
           GM+V++R+ +V+TDK+DRP  D+KI+
Sbjct: 121 GMDVVQRIENVKTDKNDRPYEDIKII 146

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  204 bits (520), Expect = 2e-68
 Identities = 78/151 (51%), Positives = 101/151 (66%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
           VTL T++G   +EL+    P+ C NF  L   GYYN   FHR IK F+VQ GDPTGTG+G
Sbjct: 3   VTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKG 62

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G+SI+G  FEDE +  LKH   G++SMAN GPNTNGSQFFIT A   HLDGK+T+FG+V 
Sbjct: 63  GESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVI 122

Query: 131 RGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
            G E +  L  +  DK  RP+ +++I   ++
Sbjct: 123 DGFETLDTLEKLPVDKKYRPLEEIRIKDVTI 153

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  202 bits (516), Expect = 7e-68
 Identities = 79/146 (54%), Positives = 100/146 (68%), Gaps = 1/146 (0%)

Query: 12  TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGG 71
           TL+T+ G   +ELY   +P+T  NF  L+R G+Y+ + FHR+I  F++QGGDPTGTG GG
Sbjct: 1   TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG 60

Query: 72  DSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCR 131
            S  G+ F DE  P   H   G LSMANAGPNTNGSQFFIT AP  HLDGKHT+FG+V  
Sbjct: 61  -SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVE 119

Query: 132 GMEVIKRLGSVQTDKDDRPIHDVKIL 157
           GM+V+ ++    TD++ RPI  V I 
Sbjct: 120 GMDVVDKIERGDTDENGRPIKPVTIS 145

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  196 bits (501), Expect = 1e-65
 Identities = 70/149 (46%), Positives = 98/149 (65%), Gaps = 6/149 (4%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
           + + T++G   +EL+   +P+T  NF  L ++G+Y+ + FHR+I  F++QGGDPTG G G
Sbjct: 2   LDITTNLGRIVIELFGDEAPKTVENFLSLCKKGFYDGTIFHRVIPGFMIQGGDPTGPGTG 61

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G         DE   +LKH   G LSMA +GPN+ GSQFFITL  A HLDG +T+FGRV 
Sbjct: 62  GK----RSIPDEFVSKLKHK-RGTLSMARSGPNSAGSQFFITLGDAPHLDGGYTVFGRVV 116

Query: 131 RGMEVIKRLGSVQTDKDDRPIHDVKILRT 159
            GM+V++++  V+TD  DRP+ DVKI   
Sbjct: 117 EGMDVVEKIEKVETD-GDRPLKDVKITSC 144

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  189 bits (481), Expect = 3e-62
 Identities = 75/153 (49%), Positives = 104/153 (67%), Gaps = 3/153 (1%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
           V L+T+ G   +EL+ K +P+ CRNF +L   GYY+N+ FHR++  FI+QGGDPTGTG G
Sbjct: 8   VILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTG 67

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G+SIYG  F+DE    L+    G++ MANAG ++NGSQFF TL  A  L+ KHT+FG+V 
Sbjct: 68  GESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKV- 126

Query: 131 RGMEV--IKRLGSVQTDKDDRPIHDVKILRTSV 161
            G  +  + +L  V+TDKD+RP++  KI    V
Sbjct: 127 TGDTIYNLLKLAEVETDKDERPVYPPKITSVEV 159

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  179 bits (457), Expect = 8e-59
 Identities = 70/154 (45%), Positives = 93/154 (60%), Gaps = 10/154 (6%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGT-GR 69
           V LET+ G  T+ELY   +P+T  NF +L + G+Y+ + FHR+I  F++QGGDPTG  G 
Sbjct: 2   VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGT 61

Query: 70  GGDSIYGHVFEDEIKPELKHT-GAGILSMANAG-PNTNGSQFFITLAPASHLDGKHTIFG 127
           GG       F+DE           G LSMA AG PN+NGSQFFIT+     LDGK+T+FG
Sbjct: 62  GGPGPP---FKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFG 118

Query: 128 RVCRGMEVIKRLGSVQTDKD----DRPIHDVKIL 157
           +V  GM+V+ ++ +  TD      D P   VKIL
Sbjct: 119 QVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKIL 152

Length = 158

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  168 bits (429), Expect = 2e-54
 Identities = 72/148 (48%), Positives = 90/148 (60%), Gaps = 11/148 (7%)

Query: 18  GSFTVELYYKHSPRTCRNFAELS--------RRGYYNNSKFHRIIKDFIVQGGDPT-GTG 68
           G   +EL+    P+T  NF  L         +   Y  S FHR+I DF++QGGD T G G
Sbjct: 15  GRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNG 74

Query: 69  RGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGR 128
            GG SIYG  F DE   +LKHTG G+LSMANAGPNTNGSQFFIT      LDGKH +FG+
Sbjct: 75  TGGKSIYGEKFPDE-NFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGK 133

Query: 129 VCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           V  GM+V+K++ +V +    +P   V I
Sbjct: 134 VVEGMDVVKKIENVGSGN-GKPKKKVVI 160

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  164 bits (418), Expect = 9e-53
 Identities = 73/159 (45%), Positives = 99/159 (62%), Gaps = 8/159 (5%)

Query: 13  LETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGD 72
           LET++G   ++L+    P  C NF +L +  YYN   F+ + KDFI Q GDPTGTG GG+
Sbjct: 2   LETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGE 61

Query: 73  SIYGHV-------FEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPAS-HLDGKHT 124
           SIY  +       FE EI P LKH+  G +SM NAG N NGSQF+ITL     +LDGKHT
Sbjct: 62  SIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHT 121

Query: 125 IFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           +FG+V  G +V++++     D D RP+ D++I  T + D
Sbjct: 122 VFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILD 160

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  143 bits (361), Expect = 5e-44
 Identities = 67/130 (51%), Positives = 79/130 (60%), Gaps = 11/130 (8%)

Query: 18  GSFTVELYYKHSPRTCRNFAEL------SRRG---YYNNSKFHRIIKDFIVQGGDPT-GT 67
           G    EL+   +P+T  NF  L         G   +Y  S FHRII  F+ QGGD T   
Sbjct: 30  GRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHN 89

Query: 68  GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
           G GG+SIYG  F DE   +LKH   G+LSMANAGPNTNGSQFFIT  P   LDGKH +FG
Sbjct: 90  GTGGESIYGRKFTDE-NFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFG 148

Query: 128 RVCRGMEVIK 137
           +V  GMEV++
Sbjct: 149 KVIEGMEVVR 158

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  137 bits (346), Expect = 1e-41
 Identities = 68/143 (47%), Positives = 88/143 (61%), Gaps = 11/143 (7%)

Query: 18  GSFTVELYYKHSPRTCRNF-----AELSRRGY---YNNSKFHRIIKDFIVQGGD-PTGTG 68
           G   +EL+   +P+T  NF      E  + G    Y   +FHR+IKDF++QGGD   G G
Sbjct: 33  GRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92

Query: 69  RGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGR 128
            G  SIYG  FEDE     KHTG G+LSMAN+GPNTNG QFFIT A    LD KH +FGR
Sbjct: 93  TGCVSIYGSKFEDE-NFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGR 151

Query: 129 VC-RGMEVIKRLGSVQTDKDDRP 150
           V   G+ V++++ +V T  ++RP
Sbjct: 152 VLGDGLLVVRKIENVATGPNNRP 174

Length = 186

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 94.4 bits (235), Expect = 3e-25
 Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 21/159 (13%)

Query: 12  TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGG 71
             +TS+G   VELY   +P T  NF    R+G+Y+N+ FHR+I  F++QGG  T      
Sbjct: 1   EFQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQK 60

Query: 72  DSIYGHVFEDEIKPE----LKHTGAGILSMA-NAGPNTNGSQFFITLAPASHLD-----G 121
           ++         IK E    L +T  G ++MA    P++  SQFFI L   + LD      
Sbjct: 61  ET------LKPIKNEAGNGLSNT-RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQW 113

Query: 122 KHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKI 156
            +T+FG V  GM+V+ ++  V+T       D P+ DV I
Sbjct: 114 GYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVII 152

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 83.0 bits (205), Expect = 1e-20
 Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 21/169 (12%)

Query: 7   GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTG 66
           G P V L TS G+  +EL  + +P + +NF +    G+YNN+ FHR+I  F++QGG  T 
Sbjct: 27  GDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE 86

Query: 67  TGRGGDSIYGHVFEDEIKPE----LKHTGAGILSMA-NAGPNTNGSQFFITLAPASHLD- 120
                  +        IK E    L++T  G ++MA  A  ++  SQFFI +A  + LD 
Sbjct: 87  ------QMQQKKPNPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDH 139

Query: 121 GK----HTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSV 161
           G+    + +FG+V +GM+V  ++  V T       + P   V IL   V
Sbjct: 140 GQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKV 188

Length = 190

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 71.8 bits (176), Expect = 2e-16
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 20/168 (11%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGG--DPTGTG 68
           VT  T+ G   ++ +   +P T +NF +  R G+YNN+ FHR+I  F++QGG  +P    
Sbjct: 2   VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61

Query: 69  RGGDSIYGHVFEDEIKPELKHTGAGILSMANAG-PNTNGSQFFITLAPASHLDGK----- 122
           +          ++E    LK+T  G L+MA    P++  +QFFI +     L+       
Sbjct: 62  KATKE----PIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQ 116

Query: 123 ---HTIFGRVCRGMEVIKRLGSVQTDKD----DRPIHDVKILRTSVKD 163
              + +F  V  GM+V+ ++  V T +     D P  DV I   +V +
Sbjct: 117 GWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE 164

Length = 164

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 72.1 bits (177), Expect = 2e-16
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 36/157 (22%)

Query: 18  GSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG------- 70
           G+ T+ L   ++P T  NF +L  RG+Y+  +FHR+   F+VQ GDP G   G       
Sbjct: 7   GTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETG 66

Query: 71  --------------GDSIYGHVFE-----DEIKPELKHTGAGILSMANA--GPNTNGSQF 109
                            +YG   E     DE      +   G ++MA     PN+  SQF
Sbjct: 67  KSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNA-FGAIAMARTEFDPNSASSQF 125

Query: 110 FITL-------APASHLDGKHTIFGRVCRGMEVIKRL 139
           F  L       +  + LDG++ +FG V  G+++++ L
Sbjct: 126 FFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL 162

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 61.8 bits (150), Expect = 3e-12
 Identities = 26/69 (37%), Positives = 43/69 (62%)

Query: 88  KHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKD 147
           +HT  G+L+M + GP+T+GS F ITL P+  LD K  +FG+    + ++++L S+  D  
Sbjct: 145 RHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDV 204

Query: 148 DRPIHDVKI 156
            RP+  V +
Sbjct: 205 GRPLLPVTV 213

Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.64
PRK00969	508	hypothetical protein; Provisional	97.65
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	97.65
PRK00969	508	hypothetical protein; Provisional	97.29
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	97.1
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	97.0
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	96.37
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	96.19
PF04126	120	Cyclophil_like: Cyclophilin-like; InterPro: IPR007	94.2
COG2164	126	Uncharacterized conserved protein [Function unknow	81.28

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.8e-55  Score=347.58  Aligned_cols=161  Identities=47%  Similarity=0.806  Sum_probs=154.0

Q ss_pred             CCCCCCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCceEEEeecCceeecCCC
Q 031256            1 MLASDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRG-----------YYNNSKFHRIIKDFIVQGGDP   64 (163)
Q Consensus         1 m~~~~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~rv~~~~~iq~G~~   64 (163)
                      |-.+..++|+|+||+|     .|||+||||.|.||+||+||+.||++.           .|+|+.||||+++|||||||+
T Consensus         1 M~~~~~~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDf   80 (372)
T KOG0546|consen    1 MGMSVRTNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDF   80 (372)
T ss_pred             CCcccCCCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeecccc
Confidence            6677778999999999     599999999999999999999999542           399999999999999999999


Q ss_pred             C-CCCCCCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCC
Q 031256           65 T-GTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQ  143 (163)
Q Consensus        65 ~-~~~~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~  143 (163)
                      . ++|+||.||||.+|.+| ++.++|+++++||||+.|||+||||||||+.+.|||||+|+|||+||+|++||+.|+.+.
T Consensus        81 s~gnGtGGeSIYG~~FdDE-nF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~  159 (372)
T KOG0546|consen   81 SEGNGTGGESIYGEKFDDE-NFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLE  159 (372)
T ss_pred             ccCCCCCcccccccccccc-cceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccc
Confidence            8 89999999999999999 689999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccceEEEEEEEc
Q 031256          144 TDKDDRPIHDVKILRTSVK  162 (163)
Q Consensus       144 ~~~~~~p~~~i~I~~~~vl  162 (163)
                      ++...+|..+|+|.+||+|
T Consensus       160 ~d~~skP~~dV~I~dCGel  178 (372)
T KOG0546|consen  160 TDEESKPLADVVISDCGEL  178 (372)
T ss_pred             cccCCCCccceEecccccc
Confidence            9999999999999999987

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.7e-55  Score=300.87  Aligned_cols=163  Identities=75%  Similarity=1.233  Sum_probs=155.5

Q ss_pred             CCCCC-CCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcC
Q 031256            1 MLASD-DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVF   79 (163)
Q Consensus         1 m~~~~-~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~   79 (163)
                      |++++ ...+.|.++||.|.|++|||-+.||+||+||.+|++.+||+|..||||+++|+||||||+++|.++.|+||.+|
T Consensus         1 ~~~~~~~q~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF   80 (164)
T KOG0881|consen    1 MIAPPEWQPPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKF   80 (164)
T ss_pred             CCCCccCCCCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchh
Confidence            34433 45788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEE
Q 031256           80 EDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT  159 (163)
Q Consensus        80 ~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~  159 (163)
                      .+|.+..|+|..+|+|+||+.|||+|+|||||||.+.+|||++|++||||+.||+|+.++..+.+++.++|..+++|.++
T Consensus        81 ~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika  160 (164)
T KOG0881|consen   81 EDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKA  160 (164)
T ss_pred             hhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEcC
Q 031256          160 SVKD  163 (163)
Q Consensus       160 ~vl~  163 (163)
                      .+.+
T Consensus       161 ~~~~  164 (164)
T KOG0881|consen  161 YPSD  164 (164)
T ss_pred             ecCC
Confidence            7653

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=4.6e-52  Score=305.73  Aligned_cols=154  Identities=53%  Similarity=0.967  Sum_probs=148.0

Q ss_pred             EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 031256           10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKH   89 (163)
Q Consensus        10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~   89 (163)
                      .|.|+|+.|+|+||||+++||++|+||++||+.+||+++.|||++|++++|+||+.+++.++.++++..+++|.++.++|
T Consensus         1 ~v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h   80 (159)
T cd01923           1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSH   80 (159)
T ss_pred             CEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCc
Confidence            37899999999999999999999999999999999999999999999999999999888889999999999998788899


Q ss_pred             CcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEEcC
Q 031256           90 TGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD  163 (163)
Q Consensus        90 ~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~vl~  163 (163)
                      +.+|+|+|+++++++++|||||+++++|+||++|+|||||++||++|++|++.+++++++|+++|+|.+|+|++
T Consensus        81 ~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~  154 (159)
T cd01923          81 DGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV  154 (159)
T ss_pred             CCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence            99999999999999999999999999999999999999999999999999999998899999999999999974

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=7.3e-52  Score=302.81  Aligned_cols=152  Identities=51%  Similarity=0.939  Sum_probs=145.5

Q ss_pred             EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 031256           10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKH   89 (163)
Q Consensus        10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~   89 (163)
                      .|.|+|+.|+|+||||++.||++|+||++||+.+||+++.|||++|++++|+||+.+++.++.++++..+++|..+.++|
T Consensus         2 ~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~   81 (153)
T cd01928           2 SVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLKH   81 (153)
T ss_pred             EEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCCc
Confidence            48999999999999999999999999999999999999999999999999999999888888889999999997778899


Q ss_pred             CcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEE
Q 031256           90 TGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV  161 (163)
Q Consensus        90 ~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~v  161 (163)
                      .++|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++++++++++|..+|+|.+|.+
T Consensus        82 ~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~~  153 (153)
T cd01928          82 DSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVTI  153 (153)
T ss_pred             CCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeEC
Confidence            889999999999999999999999999999999999999999999999999999999999999999999864

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=1.9e-51  Score=299.17  Aligned_cols=148  Identities=54%  Similarity=0.970  Sum_probs=141.9

Q ss_pred             EEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCc
Q 031256           12 TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTG   91 (163)
Q Consensus        12 ~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~   91 (163)
                      .|+|+.|+|+||||.+.||++|+||++||+.+||+++.|||++|++++|+||+.+++.++.++|+..+++|..+.++|.+
T Consensus         1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~   80 (148)
T cd01927           1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDR   80 (148)
T ss_pred             CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCC
Confidence            37999999999999999999999999999999999999999999999999999988888889999999999877899998


Q ss_pred             ceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEE
Q 031256           92 AGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT  159 (163)
Q Consensus        92 ~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~  159 (163)
                      +|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++++++|.++|+|.++
T Consensus        81 ~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~  148 (148)
T cd01927          81 PYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIINI  148 (148)
T ss_pred             CeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence            99999999999999999999999999999999999999999999999999999989999999999863

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.8e-52  Score=304.67  Aligned_cols=159  Identities=47%  Similarity=0.797  Sum_probs=149.9

Q ss_pred             CCCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcC----CcCCceEEEeecCceeecCCCC-CCCCCCCC
Q 031256            4 SDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRG----YYNNSKFHRIIKDFIVQGGDPT-GTGRGGDS   73 (163)
Q Consensus         4 ~~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~----~y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~   73 (163)
                      .++.+.+|+|+..     .|||+|+||++.+|+||+||.+||.++    -|.++.||||+|||+|||||.+ +++.++.|
T Consensus        35 ~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~S  114 (217)
T KOG0880|consen   35 GPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKS  114 (217)
T ss_pred             CCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeE
Confidence            4567889999997     589999999999999999999999733    3999999999999999999998 67999999


Q ss_pred             CCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccc
Q 031256           74 IYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHD  153 (163)
Q Consensus        74 ~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~  153 (163)
                      +||.+|++| +..|+|+++|.||||+.|||+||||||||+...+|||++|+|||+|++||++|.+|+.+.+|++++|.++
T Consensus       115 IyG~~F~DE-Nf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~  193 (217)
T KOG0880|consen  115 IYGEKFPDE-NFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLED  193 (217)
T ss_pred             eecCCCCCc-cceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcccc
Confidence            999999999 5899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEcC
Q 031256          154 VKILRTSVKD  163 (163)
Q Consensus       154 i~I~~~~vl~  163 (163)
                      ++|.+|+-|+
T Consensus       194 v~I~~~g~l~  203 (217)
T KOG0880|consen  194 VVIANCGELP  203 (217)
T ss_pred             EEEeecCccc
Confidence            9999998653

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=1.9e-50  Score=299.12  Aligned_cols=152  Identities=48%  Similarity=0.856  Sum_probs=141.0

Q ss_pred             EEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCC-------CcCCCCCC
Q 031256           12 TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYG-------HVFEDEIK   84 (163)
Q Consensus        12 ~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~-------~~~~~e~~   84 (163)
                      .|+|+.|+|+||||.+.||++|+||++||+.+||+++.||||+|++++||||+.+++.++.++++       ..+++|..
T Consensus         1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~   80 (166)
T cd01921           1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL   80 (166)
T ss_pred             CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence            37899999999999999999999999999999999999999999999999999887777776654       34667766


Q ss_pred             CCCCCCcceEEEeeeCCCCCCcccEEEEcCC-CCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEEcC
Q 031256           85 PELKHTGAGILSMANAGPNTNGSQFFITLAP-ASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD  163 (163)
Q Consensus        85 ~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~-~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~vl~  163 (163)
                      +.++|..+|+|+|++.++++++|||||++++ .++||++|+|||||++|||||++|++++++++++|.++|+|.+|+|++
T Consensus        81 ~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~  160 (166)
T cd01921          81 PLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILD  160 (166)
T ss_pred             CccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence            7889988999999999999999999999975 799999999999999999999999999999999999999999999974

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=2.3e-50  Score=292.81  Aligned_cols=146  Identities=74%  Similarity=1.255  Sum_probs=139.4

Q ss_pred             EEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCc
Q 031256           12 TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTG   91 (163)
Q Consensus        12 ~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~   91 (163)
                      .|+|+.|+|+||||++.||++|+||++||+.+||+++.|||++|++++||||+.+++.++.++++..+++|..+.++|.+
T Consensus         1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~   80 (146)
T cd01922           1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTG   80 (146)
T ss_pred             CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCC
Confidence            37899999999999999999999999999999999999999999999999999988888888999999999778899999


Q ss_pred             ceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEE
Q 031256           92 AGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILR  158 (163)
Q Consensus        92 ~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~  158 (163)
                      +|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|.++|+|.+
T Consensus        81 ~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~  146 (146)
T cd01922          81 AGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK  146 (146)
T ss_pred             CeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence            999999999999999999999999999999999999999999999999999997 889999999964

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=7.2e-50  Score=297.17  Aligned_cols=160  Identities=46%  Similarity=0.849  Sum_probs=151.9

Q ss_pred             CCCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCC
Q 031256            4 SDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEI   83 (163)
Q Consensus         4 ~~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~   83 (163)
                      +++.+.+|.|+|+.|+|+||||++.||++|+||++||+.+||+++.|||++|++++|||++.+++.++.++|+..+++|.
T Consensus         1 ~~~~~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~   80 (171)
T cd01925           1 EPPTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEF   80 (171)
T ss_pred             CCCcccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCccc
Confidence            46778899999999999999999999999999999999999999999999999999999999888889999999999998


Q ss_pred             CCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEE-cCHHHHHHHhcCCCCCCCCcccceEEEEEEEc
Q 031256           84 KPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC-RGMEVIKRLGSVQTDKDDRPIHDVKILRTSVK  162 (163)
Q Consensus        84 ~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~vl  162 (163)
                      .+.++|.++|+|+|++.++++++|||||+++++++||++|+|||||+ ++++++++|++++++++++|.++|+|.+|+|+
T Consensus        81 ~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~  160 (171)
T cd01925          81 HSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVL  160 (171)
T ss_pred             ccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEE
Confidence            77888998999999999999999999999999999999999999999 47899999999999999999999999999987


Q ss_pred             C
Q 031256          163 D  163 (163)
Q Consensus       163 ~  163 (163)
                      +
T Consensus       161 ~  161 (171)
T cd01925         161 E  161 (171)
T ss_pred             c
Confidence            4

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-49  Score=289.94  Aligned_cols=149  Identities=48%  Similarity=0.846  Sum_probs=132.9

Q ss_pred             EEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCC-CCCCCCCCCCcCCCCCCCCCCC
Q 031256           11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGT-GRGGDSIYGHVFEDEIKPELKH   89 (163)
Q Consensus        11 v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~-~~~~~~~~~~~~~~e~~~~l~~   89 (163)
                      +.++|++|+|+||||++.||+||+||++||+.+||+|+.||||+|+|++||||+.+. +.+++   +..+++|+.. ..|
T Consensus         2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~-~~~   77 (158)
T COG0652           2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFA-LNG   77 (158)
T ss_pred             ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccccc-ccc
Confidence            689999999999999999999999999999999999999999999999999999966 77666   3778888543 344


Q ss_pred             Cc--ceEEEeeeCC-CCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC----CCcccceEEEEEEEc
Q 031256           90 TG--AGILSMANAG-PNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKD----DRPIHDVKILRTSVK  162 (163)
Q Consensus        90 ~~--~G~v~~~~~~-~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~----~~p~~~i~I~~~~vl  162 (163)
                      .+  +|+||||+.+ |++++|||||++.+++|||++|+|||+|++|||+|++|++..+...    ..|..+++|.++.++
T Consensus        78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~  157 (158)
T COG0652          78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV  157 (158)
T ss_pred             ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence            44  9999999988 9999999999999999999999999999999999999999877653    456688999988776


Q ss_pred             C
Q 031256          163 D  163 (163)
Q Consensus       163 ~  163 (163)
                      +
T Consensus       158 ~  158 (158)
T COG0652         158 E  158 (158)
T ss_pred             C
Confidence            3

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=1e-47  Score=288.72  Aligned_cols=156  Identities=44%  Similarity=0.749  Sum_probs=143.6

Q ss_pred             CCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcCC--------cCCceEEEeecCceeecCCCC-CCCCCC
Q 031256            6 DGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQGGDPT-GTGRGG   71 (163)
Q Consensus         6 ~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~f~rv~~~~~iq~G~~~-~~~~~~   71 (163)
                      +.++.|+|+++     .|+|+||||.+.||++|+||++||++++        |+++.||||+|++++||||+. +++.++
T Consensus        16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~   95 (186)
T PLN03149         16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC   95 (186)
T ss_pred             CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCc
Confidence            44678999976     5999999999999999999999997654        999999999999999999975 677788


Q ss_pred             CCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEE-cCHHHHHHHhcCCCCCCCCc
Q 031256           72 DSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC-RGMEVIKRLGSVQTDKDDRP  150 (163)
Q Consensus        72 ~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~~~~~~p  150 (163)
                      .++|+..+++|. ..++|.++|+|+|++.++++++|||||+++++|+||++|+|||+|+ +||+||++|++++++++++|
T Consensus        96 ~~~~g~~f~~e~-~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P  174 (186)
T PLN03149         96 VSIYGSKFEDEN-FIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRP  174 (186)
T ss_pred             ccccCCccCCcc-cccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCC
Confidence            888998888884 4678888999999999999999999999999999999999999999 79999999999999999999


Q ss_pred             ccceEEEEEEEc
Q 031256          151 IHDVKILRTSVK  162 (163)
Q Consensus       151 ~~~i~I~~~~vl  162 (163)
                      .++|+|.+|+++
T Consensus       175 ~~~i~I~~cG~~  186 (186)
T PLN03149        175 KLACVISECGEM  186 (186)
T ss_pred             cCCeEEEeCEeC
Confidence            999999999975

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-49  Score=274.19  Aligned_cols=156  Identities=44%  Similarity=0.800  Sum_probs=148.9

Q ss_pred             CCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcCC--------cCCceEEEeecCceeecCCCC-CCCCC
Q 031256            5 DDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQGGDPT-GTGRG   70 (163)
Q Consensus         5 ~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~f~rv~~~~~iq~G~~~-~~~~~   70 (163)
                      ++.+|.|+|+.+     .|||.||||++.+|+|++||++.|++.|        |+++.||||+++|+|||||.- ++|++
T Consensus         7 ~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG   86 (177)
T KOG0879|consen    7 SPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG   86 (177)
T ss_pred             CCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCce
Confidence            456899999987     6899999999999999999999998776        999999999999999999976 78888


Q ss_pred             CCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCc
Q 031256           71 GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRP  150 (163)
Q Consensus        71 ~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p  150 (163)
                      ..++|+.+|++| ++.|+|+.+|+||||++|++++|.|||||..+..+||++|+|||||++|+.++++|+.+++.++++|
T Consensus        87 ~~sIy~~~F~DE-NFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkP  165 (177)
T KOG0879|consen   87 VASIYGSTFPDE-NFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKP  165 (177)
T ss_pred             EEEEcCCCCCCc-ceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCC
Confidence            899999999999 6899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEEE
Q 031256          151 IHDVKILRTSV  161 (163)
Q Consensus       151 ~~~i~I~~~~v  161 (163)
                      +.+|.|..|+.
T Consensus       166 Kl~v~i~qCGe  176 (177)
T KOG0879|consen  166 KLPVVIVQCGE  176 (177)
T ss_pred             CCcEEEeeccc
Confidence            99999999985

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8e-49  Score=313.47  Aligned_cols=157  Identities=52%  Similarity=0.916  Sum_probs=152.9

Q ss_pred             CCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCC
Q 031256            6 DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKP   85 (163)
Q Consensus         6 ~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~   85 (163)
                      +-...|.|.|+.|.|.|||+.|.+|++|+||+.||+.|||+|+.|||.+.+|+||||||+++|.||+|+||.+|.+|+.+
T Consensus       275 Kkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFkDEf~~  354 (518)
T KOG0883|consen  275 KKKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFCS  354 (518)
T ss_pred             cccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCccccccCC
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEEc
Q 031256           86 ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVK  162 (163)
Q Consensus        86 ~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~vl  162 (163)
                      .|.|+.||+||||++|||+|||||||+..++.+||++||+||||+.|+++|.+|+.+++++.++|+.+|+|.++.|.
T Consensus       355 ~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VF  431 (518)
T KOG0883|consen  355 NLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVF  431 (518)
T ss_pred             CCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998763

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.7e-49  Score=318.45  Aligned_cols=154  Identities=55%  Similarity=0.941  Sum_probs=150.9

Q ss_pred             CCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCC
Q 031256            8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPEL   87 (163)
Q Consensus         8 ~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l   87 (163)
                      ...+.++|+.|+|.|.||+++||++|+||...|+.|||+|..||||+++|+||+|||.++|+||+||||..|++|+++.|
T Consensus       404 ~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~l  483 (558)
T KOG0882|consen  404 GKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNL  483 (558)
T ss_pred             ccceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCccc
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEE
Q 031256           88 KHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV  161 (163)
Q Consensus        88 ~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~v  161 (163)
                      +|+++-+||||++|||+||||||||+.+.||||++|||||||+.||+|+++|+++.++++++|++++.|.++.|
T Consensus       484 rhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv  557 (558)
T KOG0882|consen  484 RHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV  557 (558)
T ss_pred             ccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=2.8e-47  Score=285.92  Aligned_cols=157  Identities=46%  Similarity=0.748  Sum_probs=144.1

Q ss_pred             CCCCCEEEEEecc-----eEEEEEEcCCCChHHHHHHHHHHh---------cCCcCCceEEEeecCceeecCCCC-CCCC
Q 031256            5 DDGPPEVTLETSM-----GSFTVELYYKHSPRTCRNFAELSR---------RGYYNNSKFHRIIKDFIVQGGDPT-GTGR   69 (163)
Q Consensus         5 ~~~~~~v~~~ts~-----G~i~ieL~~~~aP~~~~nF~~l~~---------~~~y~g~~f~rv~~~~~iq~G~~~-~~~~   69 (163)
                      ...+++|+|+++.     |+|+||||.+.||++|+||++||+         .++|+++.||||+|++++|+||+. +++.
T Consensus        12 ~~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~   91 (183)
T PTZ00060         12 MSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGT   91 (183)
T ss_pred             cCCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCC
Confidence            3457899999874     999999999999999999999996         468999999999999999999986 5677


Q ss_pred             CCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCC
Q 031256           70 GGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDR  149 (163)
Q Consensus        70 ~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~  149 (163)
                      ++.++++..+++| ...++|.++|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++.++ ++++
T Consensus        92 ~g~~~~g~~~~~e-~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~  169 (183)
T PTZ00060         92 GGESIYGRKFTDE-NFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGY  169 (183)
T ss_pred             CCCcccccccCCc-cccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC-CCCC
Confidence            8888888888888 4678899899999999999999999999999999999999999999999999999999887 5689


Q ss_pred             cccceEEEEEEEcC
Q 031256          150 PIHDVKILRTSVKD  163 (163)
Q Consensus       150 p~~~i~I~~~~vl~  163 (163)
                      |.++|+|.+|++++
T Consensus       170 P~~~v~I~~cg~~~  183 (183)
T PTZ00060        170 PKKPVVVTDCGELQ  183 (183)
T ss_pred             CcCCeEEEEeEEcC
Confidence            99999999999985

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=6e-47  Score=285.33  Aligned_cols=156  Identities=33%  Similarity=0.584  Sum_probs=136.3

Q ss_pred             CCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCC
Q 031256            5 DDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIK   84 (163)
Q Consensus         5 ~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~   84 (163)
                      ++..++|.|+|+.|+|+||||.++||++|+||++||+.+||+|+.|||++|+|++|||++.....+  ..++..+.+|..
T Consensus        25 ~~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~--~~~~~~~~~e~~  102 (190)
T PRK10903         25 AKGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ--KKPNPPIKNEAD  102 (190)
T ss_pred             cCCCcEEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCC--CCCCCcccCccc
Confidence            356778999999999999999999999999999999999999999999999999999998743221  223556777765


Q ss_pred             CCCCCCcceEEEeeeC-CCCCCcccEEEEcCCCCCCCC-----CCcEEEEEEcCHHHHHHHhcCCCCC----CCCcccce
Q 031256           85 PELKHTGAGILSMANA-GPNTNGSQFFITLAPASHLDG-----KHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDV  154 (163)
Q Consensus        85 ~~l~~~~~G~v~~~~~-~~~~~~sqFfI~l~~~~~ld~-----~~~vfG~Vi~G~~vl~~I~~~~~~~----~~~p~~~i  154 (163)
                      +.++|. +|+|+|++. ++++++|||||++++.++||+     +|+|||+|++|||||++|++.++++    +++|.++|
T Consensus       103 ~~l~~~-~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v  181 (190)
T PRK10903        103 NGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPV  181 (190)
T ss_pred             ccCcCC-CcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCe
Confidence            555554 999999985 489999999999999999984     8999999999999999999999876    57999999


Q ss_pred             EEEEEEEcC
Q 031256          155 KILRTSVKD  163 (163)
Q Consensus       155 ~I~~~~vl~  163 (163)
                      +|.+|+|+.
T Consensus       182 ~I~~~~v~~  190 (190)
T PRK10903        182 VILSAKVLP  190 (190)
T ss_pred             EEEEEEEeC
Confidence            999999873

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=5.3e-47  Score=293.96  Aligned_cols=156  Identities=28%  Similarity=0.424  Sum_probs=141.9

Q ss_pred             CCCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCceEEEeecC-ceeecCCCCC
Q 031256            4 SDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRG-----------YYNNSKFHRIIKD-FIVQGGDPTG   66 (163)
Q Consensus         4 ~~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~rv~~~-~~iq~G~~~~   66 (163)
                      +...+++|+|+|+     .|+|+||||.+.||++|+||++||++.           +|+++.||||+++ +++|+||+..
T Consensus        48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~  127 (249)
T PTZ00221         48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS  127 (249)
T ss_pred             cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence            4577899999998     478999999999999999999999743           3999999999986 8999999874


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCC
Q 031256           67 TGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDK  146 (163)
Q Consensus        67 ~~~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~  146 (163)
                      .   +.+++|..|++|. ..++|+++|+|+|++.++++++||||||+.++|+||++|+|||+|++||+||++|++++++.
T Consensus       128 ~---g~s~~G~~f~dE~-~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~  203 (249)
T PTZ00221        128 F---NVSSTGTPIADEG-YRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDD  203 (249)
T ss_pred             C---CccCCCCcccCcc-ccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCC
Confidence            3   4466788899994 57899999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCcccceEEEEEEEcC
Q 031256          147 DDRPIHDVKILRTSVKD  163 (163)
Q Consensus       147 ~~~p~~~i~I~~~~vl~  163 (163)
                      +++|.++|+|.+|+++.
T Consensus       204 ~grP~~~V~I~~Cgvl~  220 (249)
T PTZ00221        204 VGRPLLPVTVSFCGALT  220 (249)
T ss_pred             CCCCCCCeEEEECeEec
Confidence            89999999999999974

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=7.9e-47  Score=279.26  Aligned_cols=150  Identities=50%  Similarity=0.877  Sum_probs=138.4

Q ss_pred             CEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhc--C------CcCCceEEEeecCceeecCCCC-CCCCCCCCC
Q 031256            9 PEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRR--G------YYNNSKFHRIIKDFIVQGGDPT-GTGRGGDSI   74 (163)
Q Consensus         9 ~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~--~------~y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~   74 (163)
                      |+|+|+.+     .|+|+||||.+.||++|+||++||++  +      +|+++.|||++|++++|+||+. +++.++.++
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~   80 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSI   80 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcc
Confidence            46777765     79999999999999999999999973  4      8999999999999999999976 667788888


Q ss_pred             CCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccce
Q 031256           75 YGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV  154 (163)
Q Consensus        75 ~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i  154 (163)
                      ++..+++| ...++|.++|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++.+++ +++|+++|
T Consensus        81 ~g~~~~~e-~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i  158 (164)
T cd01926          81 YGEKFPDE-NFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKV  158 (164)
T ss_pred             cCCccCCC-CccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCe
Confidence            99888888 46789988999999999999999999999999999999999999999999999999999998 89999999


Q ss_pred             EEEEEE
Q 031256          155 KILRTS  160 (163)
Q Consensus       155 ~I~~~~  160 (163)
                      +|.+|+
T Consensus       159 ~I~~cG  164 (164)
T cd01926         159 VIADCG  164 (164)
T ss_pred             EEEECC
Confidence            999996

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=4.1e-46  Score=275.07  Aligned_cols=150  Identities=32%  Similarity=0.598  Sum_probs=130.5

Q ss_pred             EEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCC
Q 031256           11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHT   90 (163)
Q Consensus        11 v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~   90 (163)
                      |.|+|+.|+|+|+||+++||++|+||++||+.+||+++.||||+|+|++|||++... .+ ...++..+++|....++| 
T Consensus         2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~-~~-~~~~~~~~~~e~~~~~~~-   78 (164)
T PRK10791          2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG-MK-QKATKEPIKNEANNGLKN-   78 (164)
T ss_pred             EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCC-CC-cCCCCCCcCCcccccccC-
Confidence            679999999999999999999999999999999999999999999999999987521 11 122355677776666766 


Q ss_pred             cceEEEeeeCC-CCCCcccEEEEcCCCCCCC-------C-CCcEEEEEEcCHHHHHHHhcCCCCC----CCCcccceEEE
Q 031256           91 GAGILSMANAG-PNTNGSQFFITLAPASHLD-------G-KHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKIL  157 (163)
Q Consensus        91 ~~G~v~~~~~~-~~~~~sqFfI~l~~~~~ld-------~-~~~vfG~Vi~G~~vl~~I~~~~~~~----~~~p~~~i~I~  157 (163)
                      .+|+||||+.+ +++++|||||++.++++||       + +|+|||+|++|||||++|+++++++    +++|..+|+|.
T Consensus        79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~  158 (164)
T PRK10791         79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE  158 (164)
T ss_pred             CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEE
Confidence            49999999864 8999999999999988776       3 7999999999999999999999876    36999999999


Q ss_pred             EEEEcC
Q 031256          158 RTSVKD  163 (163)
Q Consensus       158 ~~~vl~  163 (163)
                      +|.|.+
T Consensus       159 ~~~i~~  164 (164)
T PRK10791        159 SVTVSE  164 (164)
T ss_pred             EEEEeC
Confidence            998864

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-46  Score=258.97  Aligned_cols=152  Identities=49%  Similarity=0.858  Sum_probs=147.6

Q ss_pred             EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 031256           10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKH   89 (163)
Q Consensus        10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~   89 (163)
                      .|.++|..|+|.||||.+.+|++|+||+.||...||+++.|||-+|+|++|+|++..+|.++.|+||.+|++|...-|+|
T Consensus         2 svtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lkh   81 (161)
T KOG0884|consen    2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLKH   81 (161)
T ss_pred             eEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             CcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC-CCcccceEEEEEEE
Q 031256           90 TGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKD-DRPIHDVKILRTSV  161 (163)
Q Consensus        90 ~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~-~~p~~~i~I~~~~v  161 (163)
                      +.||.||||+.||++++|||||+.+.+|+||-+|++||+||+|+|+|++|++.++++. .+|+.++.|.++.|
T Consensus        82 ~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti  154 (161)
T KOG0884|consen   82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI  154 (161)
T ss_pred             ccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence            9999999999999999999999999999999999999999999999999999999876 89999999998876

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=6e-45  Score=266.87  Aligned_cols=144  Identities=36%  Similarity=0.597  Sum_probs=125.4

Q ss_pred             EEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcc
Q 031256           13 LETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGA   92 (163)
Q Consensus        13 ~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~   92 (163)
                      |+|+.|+|+||||+++||++|+||++||+.+||+++.||||+|++++|||++.....+  ..++..+.+|....++ ..+
T Consensus         2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~--~~~~~~~~~e~~~~~~-~~~   78 (155)
T cd01920           2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQ--KETLKPIKNEAGNGLS-NTR   78 (155)
T ss_pred             cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCc--cccCCcccCccccccc-CCc
Confidence            7899999999999999999999999999999999999999999999999998754332  2234566677544444 559


Q ss_pred             eEEEeeeCC-CCCCcccEEEEcCCCCCCCC-----CCcEEEEEEcCHHHHHHHhcCCCCCC----CCcccceEEEEE
Q 031256           93 GILSMANAG-PNTNGSQFFITLAPASHLDG-----KHTIFGRVCRGMEVIKRLGSVQTDKD----DRPIHDVKILRT  159 (163)
Q Consensus        93 G~v~~~~~~-~~~~~sqFfI~l~~~~~ld~-----~~~vfG~Vi~G~~vl~~I~~~~~~~~----~~p~~~i~I~~~  159 (163)
                      |+||||+.+ +++++|||||+++++++||+     +|+|||+|++||+||++|++++++++    ++|..+|+|.++
T Consensus        79 G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~  155 (155)
T cd01920          79 GTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA  155 (155)
T ss_pred             eEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence            999999864 89999999999999999995     79999999999999999999999764    699999999863

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-45  Score=291.46  Aligned_cols=160  Identities=46%  Similarity=0.845  Sum_probs=156.4

Q ss_pred             CCCCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCC
Q 031256            3 ASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDE   82 (163)
Q Consensus         3 ~~~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e   82 (163)
                      .+|+++.+|.+.|+.|+|.||||+.+||++|+||++||-.|||+|+.|||++|+|++|||||.++|+||.||||..|.+|
T Consensus         7 ~EP~ttgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE   86 (439)
T KOG0885|consen    7 LEPPTTGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADE   86 (439)
T ss_pred             cCCCccceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhh
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEE-cCHHHHHHHhcCCCCCCCCcccceEEEEEEE
Q 031256           83 IKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC-RGMEVIKRLGSVQTDKDDRPIHDVKILRTSV  161 (163)
Q Consensus        83 ~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~v  161 (163)
                      .+++|++.+||+|+||+.+.+.||||||+||++.|+|++++++||+|+ +.+..+.+|..+.++.+.+|..+.+|.+|+|
T Consensus        87 ~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV  166 (439)
T KOG0885|consen   87 FHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEV  166 (439)
T ss_pred             cCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEe
Confidence            999999999999999999999999999999999999999999999999 5899999999999999999999999999999


Q ss_pred             c
Q 031256          162 K  162 (163)
Q Consensus       162 l  162 (163)
                      +
T Consensus       167 ~  167 (439)
T KOG0885|consen  167 L  167 (439)
T ss_pred             e
Confidence            7

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=3.6e-44  Score=260.12  Aligned_cols=146  Identities=54%  Similarity=0.911  Sum_probs=134.3

Q ss_pred             EEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCc
Q 031256           12 TLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTG   91 (163)
Q Consensus        12 ~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~   91 (163)
                      +++|+.|+|+||||++.||++|+||++||+.++|+++.|||++|++++|+|++..++..+ +.++..+++|..+...|.+
T Consensus         1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~   79 (146)
T cd00317           1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHR   79 (146)
T ss_pred             CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCC
Confidence            478999999999999999999999999999999999999999999999999988654432 4557788899877776788


Q ss_pred             ceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEE
Q 031256           92 AGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILR  158 (163)
Q Consensus        92 ~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~  158 (163)
                      +|+|+|++.++++++|||||+++++++||++|+|||||++||++|++|++.+++++++|.++|+|.+
T Consensus        80 ~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  146 (146)
T cd00317          80 RGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD  146 (146)
T ss_pred             CcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999963

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-44  Score=269.26  Aligned_cols=155  Identities=45%  Similarity=0.744  Sum_probs=145.3

Q ss_pred             CCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHh--cCC-cCCceEEEeecCceeecCCCC-CCCCCCCCCCCC
Q 031256            7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSR--RGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGDSIYGH   77 (163)
Q Consensus         7 ~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~~~   77 (163)
                      .+|+|+++..     .|+|+++|..|..|++++||..||.  .|| |+|++||||+|.|++||||.+ ++|+++.||||.
T Consensus       135 ~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygk  214 (298)
T KOG0111|consen  135 ENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGK  214 (298)
T ss_pred             hChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccc
Confidence            4677888775     5999999999999999999999995  455 999999999999999999998 789999999999


Q ss_pred             cCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEE
Q 031256           78 VFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL  157 (163)
Q Consensus        78 ~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~  157 (163)
                      +|.+| ++.|+|..+|+||||++|+|+|||||||++....|||++|+|||.|++||+||+++++.++ +.++|.+.|+|.
T Consensus       215 kfdde-nf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgs-ksgkp~qkv~i~  292 (298)
T KOG0111|consen  215 KFDDE-NFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGS-KSGKPQQKVKIV  292 (298)
T ss_pred             ccccc-ceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccC-CCCCcceEEEEE
Confidence            99999 6899999999999999999999999999999999999999999999999999999999986 789999999999


Q ss_pred             EEEEcC
Q 031256          158 RTSVKD  163 (163)
Q Consensus       158 ~~~vl~  163 (163)
                      +|+.++
T Consensus       293 ~cge~~  298 (298)
T KOG0111|consen  293 ECGEIE  298 (298)
T ss_pred             eccccC
Confidence            999764

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=8.2e-43  Score=255.22  Aligned_cols=148  Identities=51%  Similarity=0.888  Sum_probs=131.2

Q ss_pred             EEEEec-ceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCC--CCCCCCcCCCCCC-CC
Q 031256           11 VTLETS-MGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGG--DSIYGHVFEDEIK-PE   86 (163)
Q Consensus        11 v~~~ts-~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~--~~~~~~~~~~e~~-~~   86 (163)
                      |.|+|+ +|+|+||||+++||++|+||++||+.++|+++.|||++|++++|+|++..++..+  ....+..+++|.. ..
T Consensus         2 ~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~~   81 (155)
T PF00160_consen    2 VDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPSL   81 (155)
T ss_dssp             EEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTTS
T ss_pred             EEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCcccccccccccc
Confidence            789997 9999999999999999999999999999999999999999999999988554311  1223446888864 34


Q ss_pred             CCCCcceEEEeeeCC--CCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEE
Q 031256           87 LKHTGAGILSMANAG--PNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV  161 (163)
Q Consensus        87 l~~~~~G~v~~~~~~--~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~v  161 (163)
                      +.| ++|+|+|++.+  +++++|||||++++.++||++|+|||+|++||++|++|++.++++  +|.++|+|.+|+|
T Consensus        82 ~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv  155 (155)
T PF00160_consen   82 LKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV  155 (155)
T ss_dssp             SSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred             ccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence            566 69999999976  788999999999999999999999999999999999999998876  9999999999997

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.9e-42  Score=271.93  Aligned_cols=154  Identities=47%  Similarity=0.863  Sum_probs=147.5

Q ss_pred             EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCC-------cCCCC
Q 031256           10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGH-------VFEDE   82 (163)
Q Consensus        10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~-------~~~~e   82 (163)
                      .|+|+|++|+|+|+||.+++|.+|.||++||+-+||+.|.||-|..+|.+|.|||+++|.||.|+|+.       .|..|
T Consensus         2 sVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE   81 (479)
T KOG0415|consen    2 SVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAE   81 (479)
T ss_pred             cEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhh
Confidence            48999999999999999999999999999999999999999999999999999999999999999874       46778


Q ss_pred             CCCCCCCCcceEEEeeeCCCCCCcccEEEEcCC-CCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEE
Q 031256           83 IKPELKHTGAGILSMANAGPNTNGSQFFITLAP-ASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV  161 (163)
Q Consensus        83 ~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~-~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~v  161 (163)
                      ..+.++|...|+|||++.|.|-+||||||||++ ...||++|+|||+|++|||+|.+|+.+-++++++|+++|+|.+..|
T Consensus        82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTii  161 (479)
T KOG0415|consen   82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTII  161 (479)
T ss_pred             hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEE
Confidence            899999999999999999999999999999985 5799999999999999999999999999999999999999999999


Q ss_pred             cC
Q 031256          162 KD  163 (163)
Q Consensus       162 l~  163 (163)
                      |+
T Consensus       162 Ld  163 (479)
T KOG0415|consen  162 LD  163 (479)
T ss_pred             ec
Confidence            86

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=3.6e-41  Score=251.23  Aligned_cols=129  Identities=36%  Similarity=0.671  Sum_probs=109.8

Q ss_pred             EecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCC---------------------CC
Q 031256           14 ETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG---------------------GD   72 (163)
Q Consensus        14 ~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~---------------------~~   72 (163)
                      .|++|+|+||||++.||++|+||++||+.+||+++.||||+|+|++||||+.+++.+                     +.
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~   82 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ   82 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence            589999999999999999999999999999999999999999999999998755322                     22


Q ss_pred             CCCCCcCC----CCCCCCCCCCcceEEEeeeCC--CCCCcccEEEEcC-------CCCCCCCCCcEEEEEEcCHHHHHHH
Q 031256           73 SIYGHVFE----DEIKPELKHTGAGILSMANAG--PNTNGSQFFITLA-------PASHLDGKHTIFGRVCRGMEVIKRL  139 (163)
Q Consensus        73 ~~~~~~~~----~e~~~~l~~~~~G~v~~~~~~--~~~~~sqFfI~l~-------~~~~ld~~~~vfG~Vi~G~~vl~~I  139 (163)
                      ++++..+.    .+..+.+.|+.+|+|||++.+  +++++|||||+++       +.++||++|+|||+|++|||||++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I  162 (176)
T cd01924          83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL  162 (176)
T ss_pred             CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhh
Confidence            34444332    222345667779999999977  6999999999998       7899999999999999999999999


Q ss_pred             hcC
Q 031256          140 GSV  142 (163)
Q Consensus       140 ~~~  142 (163)
                      +..
T Consensus       163 ~~g  165 (176)
T cd01924         163 KVG  165 (176)
T ss_pred             cCC
Confidence            754

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-36  Score=219.01  Aligned_cols=154  Identities=45%  Similarity=0.773  Sum_probs=140.7

Q ss_pred             CCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcC--C-cCCceEEE---eecCceeecCCCC-CCCCCCCCC
Q 031256            7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRG--Y-YNNSKFHR---IIKDFIVQGGDPT-GTGRGGDSI   74 (163)
Q Consensus         7 ~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~--~-y~g~~f~r---v~~~~~iq~G~~~-~~~~~~~~~   74 (163)
                      .+++|+++.+     +|+++++|+.|..|+|++||..||.+.  + |++..|||   .++++++||||.+ .+++++.|+
T Consensus         2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSi   81 (167)
T KOG0865|consen    2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSI   81 (167)
T ss_pred             CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEe
Confidence            4678899875     799999999999999999999999642  2 99999999   3447999999988 778999999


Q ss_pred             CCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccce
Q 031256           75 YGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV  154 (163)
Q Consensus        75 ~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i  154 (163)
                      |+++|++| ++.++|..+|+|+||+.+|++++|||||++....|||++|+|||+|.+||+++++|+.... .++++.++|
T Consensus        82 y~ekF~De-nFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs-~~gk~~~~i  159 (167)
T KOG0865|consen   82 YGEKFDDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGS-RNGKTSKKI  159 (167)
T ss_pred             cccccCCc-CcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCC-cCCcccccE
Confidence            99999999 6899999999999999999999999999999889999999999999999999999999775 789999999


Q ss_pred             EEEEEEEc
Q 031256          155 KILRTSVK  162 (163)
Q Consensus       155 ~I~~~~vl  162 (163)
                      .|.+|+.|
T Consensus       160 ~i~dcg~l  167 (167)
T KOG0865|consen  160 TIADCGQL  167 (167)
T ss_pred             EEecCCcC
Confidence            99999865

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=3.5e-08  Score=81.84  Aligned_cols=160  Identities=20%  Similarity=0.236  Sum_probs=127.6

Q ss_pred             CCCCCCCCCEEEEEecce----EEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCC-CCC---C
Q 031256            1 MLASDDGPPEVTLETSMG----SFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTG-RGG---D   72 (163)
Q Consensus         1 m~~~~~~~~~v~~~ts~G----~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~-~~~---~   72 (163)
                      |+.-......+.+.|+.|    .|.|+++.+-.|.-++-|..+|+.+++++..|.+|...++.|.||..-.. .+|   .
T Consensus        91 miKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEy  170 (558)
T KOG0882|consen   91 MIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEY  170 (558)
T ss_pred             hcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEe
Confidence            334445566788999999    89999999999999999999999999999999999999999999865221 111   1


Q ss_pred             CCCCC---cCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCC
Q 031256           73 SIYGH---VFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDR  149 (163)
Q Consensus        73 ~~~~~---~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~  149 (163)
                      +....   ..+.+.+..++|. .-++...+......+-+|++.-...+.+..+..|+|++..|-++++.|.+..++....
T Consensus       171 Ws~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q  249 (558)
T KOG0882|consen  171 WSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQ  249 (558)
T ss_pred             ecCCCcccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhc
Confidence            11111   1123345677887 6666777665566677899988888999999999999999999999999999999999


Q ss_pred             cccceEEEEEEE
Q 031256          150 PIHDVKILRTSV  161 (163)
Q Consensus       150 p~~~i~I~~~~v  161 (163)
                      |..++.|.+++.
T Consensus       250 ~ks~y~l~~Vel  261 (558)
T KOG0882|consen  250 PKSPYGLMHVEL  261 (558)
T ss_pred             cccccccceeeh
Confidence            999999988865

>PRK00969 hypothetical protein; Provisional

Probab=97.65  E-value=0.00026  Score=60.10  Aligned_cols=97  Identities=25%  Similarity=0.365  Sum_probs=65.3

Q ss_pred             EEEEEEcCCCChHHHHHHHHHHhcCCc----CCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcceE
Q 031256           19 SFTVELYYKHSPRTCRNFAELSRRGYY----NNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGI   94 (163)
Q Consensus        19 ~i~ieL~~~~aP~~~~nF~~l~~~~~y----~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~G~   94 (163)
                      .+.+||.++ +|.++++|+.+.+.|.+    .-++|-+   +.               +..+...+.|+   ....++|+
T Consensus       205 y~eve~~~~-~p~s~EH~la~~~~G~f~Vd~~tstfI~---d~---------------~L~g~~~p~En---~~~R~~Gt  262 (508)
T PRK00969        205 YVEVELDPG-APKSVEHFLALLEDGTFEVDFETSTFIA---DD---------------RLQGLKIPEEN---FEPRRRGT  262 (508)
T ss_pred             EEEEEEcCC-CCchHHHHHHHHhCCeEEEeeeecceEe---ec---------------cccCccCCccc---cCccccce
Confidence            477888665 99999999999998762    2222211   11               12234445552   23345999


Q ss_pred             EEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHh
Q 031256           95 LSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLG  140 (163)
Q Consensus        95 v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~  140 (163)
                      |.+.+.|.+  .-.-||...+-+ -.-.|+|+|+|++|||+++--+
T Consensus       263 VTVRt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~  305 (508)
T PRK00969        263 VTVRTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAK  305 (508)
T ss_pred             EEEEeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeeccc
Confidence            999998754  335888776543 2357999999999999987443

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=97.65  E-value=0.00032  Score=59.42  Aligned_cols=97  Identities=26%  Similarity=0.397  Sum_probs=64.9

Q ss_pred             EEEEEEcCCCChHHHHHHHHHHhcCCc----CCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcceE
Q 031256           19 SFTVELYYKHSPRTCRNFAELSRRGYY----NNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGI   94 (163)
Q Consensus        19 ~i~ieL~~~~aP~~~~nF~~l~~~~~y----~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~G~   94 (163)
                      .+.+||.++ +|.++++|+.+.+.|.+    .-.+|-+   +               .+..+...+.|+   +....+|+
T Consensus       202 y~evE~~~~-~p~s~EH~la~~~~G~~~Vd~~tsTfi~---d---------------~~L~g~~~p~En---~~~R~rGt  259 (503)
T TIGR03268       202 YVEVELDPN-APVSVEHFLALMEDGTFRVDYRTSTFIS---D---------------DSLRGLDKPEEN---IEKRRRGA  259 (503)
T ss_pred             EEEEEEcCC-CChhHHHHHHHHhCCeEEEeeeecceEe---c---------------ccccCccCCccc---cCccccee
Confidence            477888654 99999999999988762    2222211   1               112234455552   23345999


Q ss_pred             EEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHh
Q 031256           95 LSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLG  140 (163)
Q Consensus        95 v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~  140 (163)
                      |.+.+.|.+  .-..||...+-+ -.-.|+|+|+|++|||+++--+
T Consensus       260 VTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~  302 (503)
T TIGR03268       260 VTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQ  302 (503)
T ss_pred             EEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeeccc
Confidence            999998754  235888776543 2357999999999999987443

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=97.29  E-value=0.0037  Score=53.25  Aligned_cols=118  Identities=16%  Similarity=0.211  Sum_probs=75.8

Q ss_pred             CCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCC
Q 031256            7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPE   86 (163)
Q Consensus         7 ~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~   86 (163)
                      .+....+.|++|.++|||.  .....+.-+++.++.  |.|...+=--++- +.+|....           .+..+ ...
T Consensus        49 ~~~~y~IkTtkG~i~Iel~--~~~~~~~~w~e~yk~--~e~~~i~W~s~~~-vAfGp~~s-----------~l~p~-~~~  111 (508)
T PRK00969         49 ETKKYRIKTTKGEIVIELT--EENESVDFWLENYKE--FEGKSLRWTSRSA-VAFGPFES-----------DLEPS-REE  111 (508)
T ss_pred             ccceEEEEccCceEEEEEc--cCcchhhHHHHhHHh--hcCCceEeccccc-eeEccccc-----------Ccccc-cCc
Confidence            4678899999999999998  456677777777765  5666664443333 33332221           11111 111


Q ss_pred             CCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCC--CCcEEEEEEcCHHHHHHHhcC
Q 031256           87 LKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG--KHTIFGRVCRGMEVIKRLGSV  142 (163)
Q Consensus        87 l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~--~~~vfG~Vi~G~~vl~~I~~~  142 (163)
                       ....++-|.+.-+|-+...+.+.|+..+....-+  +--+||+|+.|..+|+++...
T Consensus       112 -~~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~~  168 (508)
T PRK00969        112 -YEYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTDG  168 (508)
T ss_pred             -ceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccCC
Confidence             1234788888888877777777777654321111  127999999999999999764

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=97.10  E-value=0.0089  Score=50.88  Aligned_cols=118  Identities=16%  Similarity=0.193  Sum_probs=76.0

Q ss_pred             CCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCC
Q 031256            7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPE   86 (163)
Q Consensus         7 ~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~   86 (163)
                      .+....+.|++|.++|+|-.  ...+++-|++.++.  |.|...+=.-++- +.+|....           .+...  ..
T Consensus        45 ~~~~y~IkTtkG~i~iel~~--~~~~~~~w~e~y~~--~e~~~i~W~s~~~-vAfGp~~s-----------dl~p~--~~  106 (503)
T TIGR03268        45 ETKEYLIKTTKGEVVIELTP--NTEAGKFWSEIYKE--LEGKQIRWTTPQE-VAFGPFPS-----------DLEPS--RE  106 (503)
T ss_pred             ccceEEEEccCceEEEEecC--CchHHHHHHHHHHh--hcCCceeecchhh-eeeCcccC-----------Ccccc--CC
Confidence            46778999999999999973  56677777777765  5555554333332 23332221           11111  11


Q ss_pred             CCCCcceEEEeeeCCCCCCcccEEEEcCCCC---CCCCCCcEEEEEEcCHHHHHHHhcC
Q 031256           87 LKHTGAGILSMANAGPNTNGSQFFITLAPAS---HLDGKHTIFGRVCRGMEVIKRLGSV  142 (163)
Q Consensus        87 l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~---~ld~~~~vfG~Vi~G~~vl~~I~~~  142 (163)
                      -....++-|.+.-+|-+...+.+.|+..+..   .+..+.-+||+|+.|..+|+++...
T Consensus       107 ~~~y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~~  165 (503)
T TIGR03268       107 PSEYERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSDG  165 (503)
T ss_pred             cceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccCC
Confidence            1223478888888888877777777766433   1222567999999999999999663

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.0023  Score=53.01  Aligned_cols=98  Identities=23%  Similarity=0.393  Sum_probs=62.9

Q ss_pred             EEEEEEcCCCChHHHHHHHHHHhcCC----cCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCCcceE
Q 031256           19 SFTVELYYKHSPRTCRNFAELSRRGY----YNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGI   94 (163)
Q Consensus        19 ~i~ieL~~~~aP~~~~nF~~l~~~~~----y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~G~   94 (163)
                      .+.+||.++ +|+++++|++|.+.|-    |.-.+|--.                  .+....+.+.| +  +-...+|.
T Consensus       204 y~eve~s~n-sP~saEH~lalmedG~lri~~~tntfis~------------------~~lq~~~~~~e-n--~d~RerG~  261 (512)
T COG4070         204 YFEVELSRN-SPKSAEHFLALMEDGTLRIDVTTNTFISD------------------DTLQEEKVPEE-N--FDLRERGA  261 (512)
T ss_pred             EEEEEeCCC-CchhHHHHHHHhhcceEEEEEeccceeec------------------cccccccCChh-h--hhhhhcce
Confidence            478888665 9999999999998764    333333111                  11112334444 2  22345899


Q ss_pred             EEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhc
Q 031256           95 LSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGS  141 (163)
Q Consensus        95 v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~  141 (163)
                      +++.+.|.+  .-.-||...+-+. --.|.++|+|++||++++--..
T Consensus       262 iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         262 ITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             EEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence            999987654  3357887654332 2468899999999999875533

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=96.37  E-value=0.014  Score=42.17  Aligned_cols=104  Identities=19%  Similarity=0.262  Sum_probs=52.4

Q ss_pred             ceEEEEEEcCCCChHHHHHHHHHHh------cCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCC
Q 031256           17 MGSFTVELYYKHSPRTCRNFAELSR------RGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHT   90 (163)
Q Consensus        17 ~G~i~ieL~~~~aP~~~~nF~~l~~------~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~   90 (163)
                      .-.++.+|..|.||+||+.|.+..=      ...|.|..++--.+.+-.                 ...+.|+.  -.+.
T Consensus         7 g~~~~A~l~~d~AP~Tcaa~~~~LP~~~~~~HarwSG~ei~~~l~~~~~-----------------~~~~~EN~--T~~P   67 (147)
T PF12903_consen    7 GVSFTARLLDDKAPKTCAAFWEALPLKGKVIHARWSGEEIWIPLPDFDP-----------------FEPGRENH--TVTP   67 (147)
T ss_dssp             TEEEEEEE-TTTSHHHHHHHHHH--EEEE-EE-SSSSSEEEEEEE--SS-----------------S---S-SE--ESS-
T ss_pred             CeEEEEEEcccCChHHHHHHHHhCCCCCcEEEEEEECcEEEEECCCcCc-----------------CCCCCCcC--cccC
Confidence            3478999999999999999999871      112555544444443210                 11233422  2344


Q ss_pred             cceEEEee--e-CC----CC-CCcccEEEEcC------CCCCCCCCCcEEEEEEcCHHHHHHHhc
Q 031256           91 GAGILSMA--N-AG----PN-TNGSQFFITLA------PASHLDGKHTIFGRVCRGMEVIKRLGS  141 (163)
Q Consensus        91 ~~G~v~~~--~-~~----~~-~~~sqFfI~l~------~~~~ld~~~~vfG~Vi~G~~vl~~I~~  141 (163)
                      .+|-|.+.  . ..    +. -....+|+-.+      +..++-+  .+|++|++|.+-+.++.+
T Consensus        68 ~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~~  130 (147)
T PF12903_consen   68 IPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEACR  130 (147)
T ss_dssp             -TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHHH
T ss_pred             CCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHHH
Confidence            46777766  1 11    11 12233443222      3333434  469999999998877743

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.024  Score=47.11  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCChHHHHHHHHHHh
Q 031256           19 SFTVELYYKHSPRTCRNFAELSR   41 (163)
Q Consensus        19 ~i~ieL~~~~aP~~~~nF~~l~~   41 (163)
                      -|.||||.+.||+++..|+.+..
T Consensus       377 iieIELyed~APrSv~yFRr~t~  399 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRSTG  399 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhcc
Confidence            48999999999999999999873

>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function

Probab=94.20  E-value=0.68  Score=32.31  Aligned_cols=101  Identities=17%  Similarity=0.206  Sum_probs=56.8

Q ss_pred             EEEEEecceEEEEEEcCCCChHHHHHHHHHH----hcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCC
Q 031256           10 EVTLETSMGSFTVELYYKHSPRTCRNFAELS----RRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKP   85 (163)
Q Consensus        10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~----~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~   85 (163)
                      ++.|+.....+.++|+..   .+++.|++..    +-.-|-+ .++--.|                     ..++.+...
T Consensus         2 kI~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~g~-E~y~~~p---------------------~~l~~~~~~   56 (120)
T PF04126_consen    2 KIKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDWGN-EKYFSLP---------------------LKLPTEENP   56 (120)
T ss_dssp             EEEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEECTT-EEEEE-S--------------------------SSSE
T ss_pred             eEEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHCCc-eEEEeCC---------------------CCCCcccCc
Confidence            466777778899999876   7888898886    1112322 2221111                     111211112


Q ss_pred             CCCCCcceEEEeeeCCCCCCcccEEEEcCCCC-------CCCCCCcEEEEEEcCHHHHHHHhc
Q 031256           86 ELKHTGAGILSMANAGPNTNGSQFFITLAPAS-------HLDGKHTIFGRVCRGMEVIKRLGS  141 (163)
Q Consensus        86 ~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~-------~ld~~~~vfG~Vi~G~~vl~~I~~  141 (163)
                      + .-.+.|-|+.-..+.+     |.|-.++.|       .+-....++|||.+|.+.++++..
T Consensus        57 ~-~~~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~  113 (120)
T PF04126_consen   57 R-SSVEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG  113 (120)
T ss_dssp             E-SSB-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred             c-ccccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence            2 2235788888766555     777777664       455678899999999998888744

; PDB: 2KA0_A 1ZX8_C 2NNZ_A.

>COG2164 Uncharacterized conserved protein [Function unknown]

Probab=81.28  E-value=3.3  Score=28.24  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=22.2

Q ss_pred             EEEEEecceEEEEEEcCCCChHHHHHHHHH
Q 031256           10 EVTLETSMGSFTVELYYKHSPRTCRNFAEL   39 (163)
Q Consensus        10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l   39 (163)
                      ++.+.-..|.-++||+.++ |.+++....-
T Consensus         5 Riri~fEsg~c~~eL~ee~-pE~vr~i~d~   33 (126)
T COG2164           5 RIRITFESGHCTGELDEEN-PESVRRIYDS   33 (126)
T ss_pred             EEEEEEecceEEEEccccC-hHHHHHHHHh
Confidence            4556666699999998886 9999876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		4e-57
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		4e-57
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		6e-57
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		4e-48
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		1e-35
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		2e-35
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		3e-34
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		5e-32
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		3e-31
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		3e-30
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		1e-29
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		1e-29
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		1e-29
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		2e-29
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		6e-29
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		2e-28
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		7e-28
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		1e-27
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		2e-27
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		4e-27
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		8e-27
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		2e-25
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		4e-25
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		5e-25
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		6e-25
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		1e-24
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		1e-24
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		1e-24
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		1e-24
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		1e-24
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		1e-24
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		1e-24
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		1e-24
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		1e-24
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		2e-24
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		2e-24
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		3e-24
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		4e-24
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		4e-24
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		4e-24
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		5e-24
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		5e-24
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		5e-24
1dyw_A	173	Biochemical And Structural Characterization Of A Di		6e-24
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		6e-24
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		1e-23
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		1e-23
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		1e-23
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		2e-23
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		2e-23
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		2e-23
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		3e-23
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		1e-22
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		1e-22
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		1e-22
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		1e-22
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		1e-22
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		4e-22
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		6e-22
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		6e-22
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		7e-22
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		8e-22
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		9e-22
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		1e-21
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		3e-21
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		4e-21
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		1e-20
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		2e-20
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		9e-14
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		9e-14
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		8e-12
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		9e-12
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		6e-11
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		5e-09

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  216 bits (551), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 96/152 (63%), Positives = 120/152 (78%)
Query: 8   PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
           PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q       
Sbjct: 11  PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 68  XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct: 71  GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 159
           RVC+G+ ++ R+G V+T+  DRP+ DVKI++ 
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  216 bits (550), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 96/152 (63%), Positives = 120/152 (78%)
Query: 8   PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
           PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q       
Sbjct: 11  PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 68  XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct: 71  GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 159
           RVC+G+ ++ R+G V+T+  DRP+ DVKI++ 
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  216 bits (549), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 96/152 (63%), Positives = 120/152 (78%)
Query: 8   PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
           PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++Q       
Sbjct: 11  PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 68  XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct: 71  GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT 159
           RVC+G+ ++ R+G V+T+  DRP+ DVKI++ 
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score =  186 bits (473), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 87/151 (57%), Positives = 107/151 (70%)
Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
           +T+ T++G F VELY+ HSP+TC NF  L   G+Y+N+ FHR+I +F++Q          
Sbjct: 41  ITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG 100
Query: 71  XXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
             SIYG  FEDEI  ELKHTGAGILSM+N GPNTN SQFFITLAP  HLDGKHTIF RV 
Sbjct: 101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVS 160
Query: 131 RGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
           + M  I+ + SVQT   ++PI D+KILRTS 
Sbjct: 161 KNMTCIENIASVQTTATNKPIFDLKILRTST 191

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/162 (46%), Positives = 98/162 (60%), Gaps = 5/162 (3%)
Query: 6   DGPPEVT----LETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQX 61
           +GP  V+    + TSMG    +L+    P+T  NF   SR GYYN   FHRIIK F++Q 
Sbjct: 15  EGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQT 74
Query: 62  XXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
                      SI+G  FEDE    L+H     LSMANAG NTNGSQFFIT+ P   LD 
Sbjct: 75  GDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDN 134
Query: 122 KHTIFGRVCRGMEVIKRLGSVQTD-KDDRPIHDVKILRTSVK 162
           KHT+FGRV +GMEV++R+ +V+ + K D+P  DV I+  +VK
Sbjct: 135 KHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 176

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 96/156 (61%)
Query: 8   PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXX 67
           P    + T+MG   + L+YK   +T +NF+  S  GYYNN  FHR+IK F+VQ       
Sbjct: 5   PKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGD 64
Query: 68  XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                SI+G+ FEDE    L H+   ++SMAN GPNTNGSQFFIT  P   LD KHT+FG
Sbjct: 65  GTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFG 124
Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           +V +G +++  +  V+TDK D+P+ D+KIL   + +
Sbjct: 125 KVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN 160

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
           V L T+ G   +EL+   +P+TC NF  L ++ YY+ + FHR I++F++Q          
Sbjct: 22  VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTG 81
Query: 71  XXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
             S +G  F+DE +P L HTG GILSMAN+GPN+N SQFFIT    ++LD KHTIFGRV 
Sbjct: 82  GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVV 141
Query: 131 RGMEVIKRLGSVQTD-KDDRPIHDVKILRTSV 161
            G +V+  + +V++D K DRP  +++I  T+V
Sbjct: 142 GGFDVLTAMENVESDPKTDRPKEEIRIDATTV 173

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score =  133 bits (334), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 6   DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXX 65
           DG   VTL T +G   +E++ + +P+TC NF  L    YYN   FHR IK F+VQ     
Sbjct: 4   DGGMSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPT 63
Query: 66  XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTI 125
                  SI+G  FEDE    LKH   G++SMAN GPNTNGSQFFIT     HLD K+T+
Sbjct: 64  GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 126 FGRVCRGMEVIKRLGSVQ-TDKDDRPIHDVKI 156
           FG+V  G+E +  L  +   +K  RP++DV I
Sbjct: 124 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHI 155

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
           VTL T +G   +E++ + +P+TC NF  L    YYN   FHR IK F+VQ          
Sbjct: 3   VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62
Query: 71  XXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
             SI+G  FEDE    LKH   G++SMAN GPNTNGSQFFIT     HLD K+T+FG+V 
Sbjct: 63  GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI 122
Query: 131 RGMEVIKRLGSVQT-DKDDRPIHDVKI 156
            G+E +  L  +   +K  RP++DV I
Sbjct: 123 DGLETLDELEKLPVNEKTYRPLNDVHI 149

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
           V + T+ G    EL+    P+ C+NF  LS  GYY N+ FH+ IK FI+Q          
Sbjct: 19  VRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKG 78
Query: 71  XXSIYGHVFEDEIKPELKHTGAGILSMANAG----PNTNGSQFFITLAPASHLDGKHTIF 126
             SIYG  F+DEI PELK+   GILSMA+ G    PNTNGSQFFIT +    L+G++ IF
Sbjct: 79  GESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIF 138
Query: 127 GRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           G++  G E +  L +  +DK  +PI ++ I
Sbjct: 139 GKLIDGFETLNTLENCPSDKSHKPIDEIII 168

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 91/147 (61%), Gaps = 5/147 (3%)
Query: 14  ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
           +  +G     L+ K  P+T  NF  L+   +G+ Y NSKFHR+IKDF++Q          
Sbjct: 26  DEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGT 85
Query: 70  XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
              SIYG  F DE   +LKH G G +SMANAG +TNGSQFFIT    + LDGKH +FG+V
Sbjct: 86  GGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 144
Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKI 156
             GMEV++++ S +TD  D+P+ DV I
Sbjct: 145 LEGMEVVRKVESTKTDSRDKPLKDVII 171

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 91/147 (61%), Gaps = 5/147 (3%)
Query: 14  ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
           +  +G     L+ K  P+T  NF  L+   +G+ Y NSKFHR+IKDF++Q          
Sbjct: 16  DEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGT 75
Query: 70  XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
              SIYG  F DE   +LKH G G +SMANAG +TNGSQFFIT    + LDGKH +FG+V
Sbjct: 76  GGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 134
Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKI 156
             GMEV++++ S +TD  D+P+ DV I
Sbjct: 135 LEGMEVVRKVESTKTDSRDKPLKDVII 161

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  125 bits (313), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 92/147 (62%), Gaps = 5/147 (3%)
Query: 14  ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
           +  +G   + L+ K  P+T  NF  L+   +G+ Y +SKFHR+IKDF++Q          
Sbjct: 23  DEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGT 82
Query: 70  XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
              SIYG  F DE   +LKH G G +SMANAG +TNGSQFFIT    + LDGKH +FG+V
Sbjct: 83  GGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 141
Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKI 156
             GMEV++++ + +TD  D+P+ DV I
Sbjct: 142 LEGMEVVRKVETTKTDGRDKPLKDVTI 168

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 92/147 (62%), Gaps = 5/147 (3%)
Query: 14  ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXX 69
           +  +G   + L+ K  P+T  NF  L+   +G+ Y +SKFHR+IKDF++Q          
Sbjct: 23  DEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGT 82
Query: 70  XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
              SIYG  F DE   +LKH G G +SMANAG +TNGSQFFIT    + LDGKH +FG+V
Sbjct: 83  GGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 141
Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKI 156
             GMEV++++ + +TD  D+P+ DV I
Sbjct: 142 LEGMEVVRKVETTKTDGRDKPLKDVTI 168

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 14  ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXXX-XX 69
           +  +G   + L+ K  P+T  NF  L+   +GY Y  SKFHR+IKDF++Q          
Sbjct: 26  DKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGT 85
Query: 70  XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
              SIYG  F DE   +LKH G G +SMANAGP+TNGSQFFITL   + LDGKH +FG+V
Sbjct: 86  GGVSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKV 144
Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
             GM V+  +    TD  DRP+ +  I+ +   D
Sbjct: 145 IDGMTVVHSIELQATDGHDRPLTNCSIINSGKID 178

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 91/159 (57%), Gaps = 6/159 (3%)
Query: 8   PP---EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXX 64
           PP   +V L+T+ G   +EL+ K +P+ CRNF +L    YY+N+ FHR++  FIVQ    
Sbjct: 21  PPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDP 80
Query: 65  XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
                   SIYG  F+DE    L+    G+++MANAG + NGSQFF TL  A  L+ KHT
Sbjct: 81  TGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHT 140
Query: 125 IFGRVCRGMEV--IKRLGSVQTDKDDRPIHDVKILRTSV 161
           IFG+V  G  V  + RL  V  D D+RP +  KI    V
Sbjct: 141 IFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEV 178

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  119 bits (298), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Query: 14  ETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXX 69
           +  +G   + L+    P+T  NF  L+   +GY Y  S FHR+IKDF++Q          
Sbjct: 18  DKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGT 77
Query: 70  XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
              SIYG  F DE   +LKH G G +SMANAGP+TNGSQFFITL   + LDGKH +FG+V
Sbjct: 78  GGMSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKV 136
Query: 130 CRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
             GM V+  +    TD  DRP+ D  I+ +   D
Sbjct: 137 LDGMTVVHSIELQATDGHDRPLTDCTIVNSGKID 170

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/148 (44%), Positives = 90/148 (60%), Gaps = 6/148 (4%)
Query: 17  MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  T+ L+ K +P T  NF +L     G+ Y +S FHR+I++F++Q             
Sbjct: 25  LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  F DE    +KH   G LSMANAGPNTNGSQFFIT AP   LDG+H +FG+V  G
Sbjct: 85  SIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDG 142
Query: 133 MEVIKRLGSVQTDKDDRPIHDVKILRTS 160
           M+V+ R+   +T+  DRP+  VKI+ + 
Sbjct: 143 MDVVLRIEKTKTNSHDRPVKPVKIVASG 170

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/148 (44%), Positives = 89/148 (60%), Gaps = 6/148 (4%)
Query: 17  MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  T+ L+ K +P T  NF +L     G+ Y +S FHR+I++F++Q             
Sbjct: 25  LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  F DE    +KH   G LSMANAGPNTNGSQFFIT AP   LDG H +FG+V  G
Sbjct: 85  SIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDG 142
Query: 133 MEVIKRLGSVQTDKDDRPIHDVKILRTS 160
           M+V+ R+   +T+  DRP+  VKI+ + 
Sbjct: 143 MDVVLRIEKTKTNSHDRPVKPVKIVASG 170

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 85/144 (59%), Gaps = 5/144 (3%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQXXX-XXXXXXXXX 72
           +G   + L+ K  P+T  NF EL+++     Y  SKFHR+I DF++Q             
Sbjct: 20  IGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGR 79
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  F DE   +LKH GAG LSMANAG +TNGSQFFIT      LDG+H +FG++  G
Sbjct: 80  SIYGEKFADE-NFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEG 138
Query: 133 MEVIKRLGSVQTDKDDRPIHDVKI 156
           M+V++++   +    DRP  DV I
Sbjct: 139 MDVVRKIEQTEKLPGDRPKQDVII 162

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 95/161 (59%), Gaps = 14/161 (8%)
Query: 10  EVTLETSM-GSFTVELYYKHSPRTCRNFAEL-----------SRRGYYNNSKFHRIIKDF 57
           +VT++ ++ G   +ELY   +PRTC NF  L            +  +Y  S FHR+IK+F
Sbjct: 12  DVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNF 71
Query: 58  IVQXXX-XXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPA 116
           ++Q             SIYG +F+DE +  +KH    ++SMAN GPNTNGSQFFIT  PA
Sbjct: 72  MIQGGDFTKGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPA 130
Query: 117 SHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 157
            HL+  H +FG+V  G EV+ ++  ++T+  +RP+ DV IL
Sbjct: 131 PHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVIL 171

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 89/144 (61%), Gaps = 6/144 (4%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G   + L+    P+T  NF +L+    G+ Y  S FHR+I++F++Q             
Sbjct: 19  VGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGK 78
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  F+DE   ++KH   G +SMANAGPN+NGSQFF+T AP   LDG+H +FG+V  G
Sbjct: 79  SIYGTRFDDE-NLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEG 136
Query: 133 MEVIKRLGSVQTDKDDRPIHDVKI 156
           M+V+K++ + +T  +D+P   VKI
Sbjct: 137 MDVVKKVENTKTGLNDKPKKAVKI 160

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 88/157 (56%), Gaps = 13/157 (8%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS-----------RRGYYNNSKFHRIIKDFIVQXX-XX 64
           +G    +L+    P+TC+NF  L            ++  Y  S FHR++K+F++Q     
Sbjct: 33  VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS 92
Query: 65  XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
                   SIYG  F+DE    LKH  A +LSMAN G +TNGSQFFIT  PA HLDG H 
Sbjct: 93  EGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHV 151
Query: 125 IFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
           +FG V  G EVI+++ +++TD   RP  DV+++   V
Sbjct: 152 VFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGV 188

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/132 (50%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q             
Sbjct: 16  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGK 75
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDGKH +FG+V  G
Sbjct: 76  SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 134
Query: 133 M---EVIKRLGS 141
           M   E +KR GS
Sbjct: 135 MNIVEAMKRFGS 146

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 84/152 (55%), Gaps = 13/152 (8%)
Query: 18  GSFTVELYYKHSPRTCRNFAELS--RRG---------YYNNSKFHRIIKDFIVQXX-XXX 65
           G    EL+    P+TC NF  L    +G         +Y +  FHR++KDF+VQ      
Sbjct: 41  GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 100
Query: 66  XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTI 125
                  SIYG  FEDE    +KH  A +LSMAN G +TNGSQFFIT  P  HLDG H +
Sbjct: 101 GNGRGGESIYGGFFEDE-SFAVKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVV 159
Query: 126 FGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 157
           FG+V  G EV++ + + +TD   +P  +V+IL
Sbjct: 160 FGQVISGQEVVREIENQKTDAASKPFAEVRIL 191

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 80/143 (55%), Gaps = 15/143 (10%)
Query: 6   DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
           DG P       +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q  
Sbjct: 13  DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 63  XXX-XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
                      SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDG
Sbjct: 66  NFTHCNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 122 KHTIFGRVCRGM---EVIKRLGS 141
           KH +FG+V  GM   E ++R GS
Sbjct: 125 KHVVFGKVKEGMNIVEAMERFGS 147

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q             
Sbjct: 17  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDGKH +FG+V  G
Sbjct: 77  SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
           M   E ++R GS
Sbjct: 136 MNIVEAMERFGS 147

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q             
Sbjct: 17  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDGKH +FG+V  G
Sbjct: 77  SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
           M   E ++R GS
Sbjct: 136 MNIVEAMERFGS 147

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q             
Sbjct: 17  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDGKH +FG+V  G
Sbjct: 77  SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
           M   E ++R GS
Sbjct: 136 MNIVEAMERFGS 147

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q             
Sbjct: 16  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 75
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDGKH +FG+V  G
Sbjct: 76  SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 134
Query: 133 M---EVIKRLGS 141
           M   E ++R GS
Sbjct: 135 MNIVEAMERFGS 146

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q             
Sbjct: 25  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 84
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDGKH +FG+V  G
Sbjct: 85  SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 143
Query: 133 M---EVIKRLGS 141
           M   E ++R GS
Sbjct: 144 MNIVEAMERFGS 155

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 80/143 (55%), Gaps = 15/143 (10%)
Query: 6   DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
           DG P       +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q  
Sbjct: 32  DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 84
Query: 63  XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
                      SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDG
Sbjct: 85  DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 143
Query: 122 KHTIFGRVCRGM---EVIKRLGS 141
           KH +FG+V  GM   E ++R GS
Sbjct: 144 KHVVFGKVKEGMNIVEAMERFGS 166

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 80/143 (55%), Gaps = 15/143 (10%)
Query: 6   DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
           DG P       +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q  
Sbjct: 13  DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 65
Query: 63  XXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
                      SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDG
Sbjct: 66  NFTHHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDG 124
Query: 122 KHTIFGRVCRGM---EVIKRLGS 141
           KH +FG+V  GM   E ++R GS
Sbjct: 125 KHVVFGKVKEGMNIVEAMERFGS 147

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 75/135 (55%), Gaps = 11/135 (8%)
Query: 15  TSMGSFTVELYYKHSPRTCRNFAELS------RRG---YYNNSKFHRIIKDFIVQXX-XX 64
           ++ G    EL+   +PRTC NF  L        RG   +Y NS FHRII  F+ Q     
Sbjct: 15  SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 65  XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
                   SIYG  F DE    +KH   G+LSMANAGPNTN SQFFITL P   LDGKH 
Sbjct: 75  NGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHV 133
Query: 125 IFGRVCRGMEVIKRL 139
           +FG+V  GM V++ +
Sbjct: 134 VFGKVIEGMNVVREM 148

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q             
Sbjct: 17  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE    LKHTG GIL+MANAGPNTNGSQFFI  A    LDGKH +FG+V  G
Sbjct: 77  SIYGEKFEDE-NFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
           M   E ++R GS
Sbjct: 136 MNIVEAMERFGS 147

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  + EL+    P+T  NF  LS   +G+ Y  S FH+II  F+ Q             
Sbjct: 17  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGK 76
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDGKH +FG+V  G
Sbjct: 77  SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
           M   E ++R GS
Sbjct: 136 MNIVEAMERFGS 147

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q             
Sbjct: 16  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 75
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDGKH +FG V  G
Sbjct: 76  SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEG 134
Query: 133 M---EVIKRLGS 141
           M   E ++R GS
Sbjct: 135 MNIVEAMERFGS 146

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 83/152 (54%), Gaps = 13/152 (8%)
Query: 18  GSFTVELYYKHSPRTCRNFAELS--RRG---------YYNNSKFHRIIKDFIVQXXX-XX 65
           G    EL+    P+TC NF  L    +G         +Y +  FHR++KDF+VQ      
Sbjct: 24  GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 83
Query: 66  XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTI 125
                  SIYG  FEDE    +KH    +LSMAN G +TNGSQFFIT  P  HLDG H +
Sbjct: 84  GNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVV 142
Query: 126 FGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 157
           FG+V  G EV++ + + +TD   +P  +V+IL
Sbjct: 143 FGQVISGQEVVREIENQKTDAASKPFAEVRIL 174

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q             
Sbjct: 17  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDG H +FG+V  G
Sbjct: 77  SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
           M   E ++R GS
Sbjct: 136 MNIVEAMERFGS 147

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 83/152 (54%), Gaps = 13/152 (8%)
Query: 18  GSFTVELYYKHSPRTCRNFAELS--RRG---------YYNNSKFHRIIKDFIVQXXX-XX 65
           G    EL+    P+TC NF  L    +G         +Y +  FHR++KDF+VQ      
Sbjct: 24  GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSE 83
Query: 66  XXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTI 125
                  SIYG  FEDE    +KH    +LSMAN G +TNGSQFFIT  P  HLDG H +
Sbjct: 84  GNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVV 142
Query: 126 FGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 157
           FG+V  G EV++ + + +TD   +P  +V+IL
Sbjct: 143 FGQVISGQEVVREIENQKTDAASKPFAEVRIL 174

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q             
Sbjct: 17  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDG H +FG+V  G
Sbjct: 77  SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEG 135
Query: 133 M---EVIKRLGS 141
           M   E ++R GS
Sbjct: 136 MNIVEAMERFGS 147

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 74/135 (54%), Gaps = 11/135 (8%)
Query: 15  TSMGSFTVELYYKHSPRTCRNFAELS------RRG---YYNNSKFHRIIKDFIVQXX-XX 64
           ++ G    EL+   +PRTC NF  L        RG   +Y NS FHRII  F+ Q     
Sbjct: 15  SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 65  XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
                   SIYG  F DE    +KH   G+LSMANAGPNTN SQF ITL P   LDGKH 
Sbjct: 75  NGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKHV 133
Query: 125 IFGRVCRGMEVIKRL 139
           +FG+V  GM V++ +
Sbjct: 134 VFGKVIEGMNVVREM 148

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 18  GSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXXS 73
           G    +LY +  P+T +NF EL+  + G+ Y +S FHR+I  F++Q             S
Sbjct: 17  GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 76
Query: 74  IYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGM 133
           IYG  F DE   ++KHT  G+LSMANAG NTNGSQFFIT  P S LDGKH +FG V  G+
Sbjct: 77  IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 135
Query: 134 EVIKRL 139
           ++++++
Sbjct: 136 DIVRKV 141

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 82/150 (54%), Gaps = 13/150 (8%)
Query: 18  GSFTVELYYKHSPRTCRNFAEL-------SRRG---YYNNSKFHRIIKDFIVQXXX-XXX 66
           G   +ELY    P+T  NF  L        + G   ++  SKFHRII +F++Q       
Sbjct: 18  GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG 77
Query: 67  XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIF 126
                 SIYG  F DE   E KHTG G+LSMANAGPNTNGSQFF+       LDGKH +F
Sbjct: 78  NGTGGESIYGEKFPDENFKE-KHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVF 136
Query: 127 GRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           GRV  G++V+K + S    +  +P+ D  I
Sbjct: 137 GRVVEGLDVVKAVES-NGSQSGKPVKDCMI 165

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 18  GSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXXS 73
           G    +LY +  P+T +NF EL+  + G+ Y +S FHR+I  F++Q             S
Sbjct: 18  GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 77
Query: 74  IYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGM 133
           IYG  F DE   ++KHT  G+LSMANAG NTNGSQFFIT  P S LDGKH +FG V  G+
Sbjct: 78  IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 136
Query: 134 EVIKRL 139
           ++++++
Sbjct: 137 DIVRKV 142

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/143 (47%), Positives = 79/143 (55%), Gaps = 15/143 (10%)
Query: 6   DGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXX 62
           DG P       +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ Q  
Sbjct: 17  DGEP-------LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGG 69
Query: 63  -XXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG 121
                      SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDG
Sbjct: 70  DFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDG 128
Query: 122 KHTIFGRVCRGM---EVIKRLGS 141
            H +FG+V  GM   E ++R GS
Sbjct: 129 XHVVFGKVKEGMNIVEAMERFGS 151

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/137 (46%), Positives = 76/137 (55%), Gaps = 7/137 (5%)
Query: 9   PEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQXXX-X 64
           P  T ET +G     L+ K  P+T +NF EL +R     Y  S FHRII +F++Q     
Sbjct: 13  PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFT 72
Query: 65  XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
                   SIYG  F DE     KH   GILSMANAGPNTNGSQFFIT A  S LDGKH 
Sbjct: 73  RGNGTGGRSIYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHV 131
Query: 125 IFGRVC--RGMEVIKRL 139
           +FG V   +   V+K +
Sbjct: 132 VFGEVADEKSYSVVKEI 148

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 79/134 (58%), Gaps = 5/134 (3%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  T+EL+    PRT  NF  L    +G+ + NS FHR+I DF+ Q             
Sbjct: 20  LGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQ 79
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE   ++KHTG G+LSMAN G NTN SQF ITL  A HLD KH +FG V  G
Sbjct: 80  SIYGDKFEDE-NFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDG 138
Query: 133 MEVIKRLGSVQTDK 146
           M+ +K++ S  + K
Sbjct: 139 MDTVKKIESFGSPK 152

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 83/154 (53%), Gaps = 21/154 (13%)
Query: 9   PEVTLETSM-----GSFTVELYYKHSPRTCRNFAEL-------SRRG---YYNNSKFHRI 53
           P+V  + S+     G   +ELY    P+T  NF  L        R G   +Y +S FHR+
Sbjct: 8   PKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRV 67
Query: 54  IKDFIVQXXX-XXXXXXXXXSIYGHVFEDEI--KPELKHTGAGILSMANAGPNTNGSQFF 110
           I +F++Q             SIYG  F DE       +HTG G LSMANAGPNTNGSQFF
Sbjct: 68  IPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFF 127
Query: 111 ITLAPASHLDGKHTIFGRVCRGMEVIK---RLGS 141
           I  A    LDGKH +FGRV  G++V+K   RLGS
Sbjct: 128 ICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGS 161

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 17  MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXX-XXXXXXXXXX 72
           +G+   +L+    P+T  NF  L    +G+ Y  S FHR+I DF++Q             
Sbjct: 15  LGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  F DE   +LKH   G+LSMANAGPNTNGSQFFIT    S LDGKH +FG V  G
Sbjct: 75  SIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDG 133
Query: 133 MEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
           M V+K +   +     +P   ++I +  V
Sbjct: 134 MNVVKAI-EAEGSGSGKPRSRIEIAKCGV 161

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 18  GSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXXS 73
           G   +EL     PRT  NF  L    RG+ Y+N  FHR+I  F+ Q             S
Sbjct: 25  GRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKS 84
Query: 74  IYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGM 133
           IYG  F+DE   +L+H G G+LSMAN+GPNTNGSQFFI       LDGKH +FGRV  G 
Sbjct: 85  IYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQ 143
Query: 134 EVIKRLGSV 142
            V+K++ SV
Sbjct: 144 NVVKKMESV 152

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 80/146 (54%), Gaps = 14/146 (9%)
Query: 17  MGSFTVELYYKHSPRTCRNFAEL--SRRG---------YYNNSKFHRIIKDFIVQXXX-X 64
           +G   +EL+    P+T  NF  L    +G         ++    FHRIIK F++Q     
Sbjct: 29  VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88
Query: 65  XXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
                   SIYG  FEDE     KH   G+LSMANAG NTNGSQFFIT  P  HLDGKH 
Sbjct: 89  NQNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHV 147
Query: 125 IFGRVCRGMEVIKRLGSVQTDKDDRP 150
           +FG+V +GM V K L +V+  K ++P
Sbjct: 148 VFGQVIKGMGVAKILENVEV-KGEKP 172

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/132 (48%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXX 72
           +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F  Q             
Sbjct: 16  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGK 75
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE    LKHTG GILS ANAGPNTNGSQFFI  A    LDGKH +FG+V  G
Sbjct: 76  SIYGEKFEDE-NFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 134
Query: 133 ---MEVIKRLGS 141
              +E  +R GS
Sbjct: 135 XNIVEAXERFGS 146

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 7   GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFI 58
           G P V L+       +G   +EL     P+T  NF  L    +G+ Y  S FHR+I  F+
Sbjct: 2   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 61
Query: 59  VQXXXXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPAS 117
            Q             SIYG  F DE    LKH G G+LSMANAGPNTNGSQFFI      
Sbjct: 62  CQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 120
Query: 118 HLDGKHTIFGRVCRGMEVIKRLGS 141
            LDGKH +FG V  GM+V+K++ S
Sbjct: 121 WLDGKHVVFGHVIEGMDVVKKIES 144

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 7   GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFI 58
           G P V L+       +G   +EL     P+T  NF  L    +G+ Y  S FHR+I  F+
Sbjct: 3   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 62
Query: 59  VQXXXXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPAS 117
            Q             SIYG  F DE    LKH G G+LSMANAGPNTNGSQFFI      
Sbjct: 63  CQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 121
Query: 118 HLDGKHTIFGRVCRGMEVIKRLGS 141
            LDGKH +FG V  GM+V+K++ S
Sbjct: 122 WLDGKHVVFGHVIEGMDVVKKIES 145

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 7   GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFI 58
           G P V L+       +G   +EL     P+T  NF  L    +G+ Y  S FHR+I  F+
Sbjct: 1   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 60
Query: 59  VQXXXXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPAS 117
            Q             SIYG  F DE    LKH G G+LSMANAGPNTNGSQFFI      
Sbjct: 61  CQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 119
Query: 118 HLDGKHTIFGRVCRGMEVIKRLGS 141
            LDGKH +FG V  GM+V+K++ S
Sbjct: 120 WLDGKHVVFGHVIEGMDVVKKIES 143

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 7   GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFI 58
           G P V L+       +G   +EL     P+T  NF  L    +G+ Y  S FHR+I  F+
Sbjct: 2   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 61
Query: 59  VQXXXXXX-XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPAS 117
            Q             SIYG  F DE    LKH G G+LSMANAGPNTNGSQFFI      
Sbjct: 62  CQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 120
Query: 118 HLDGKHTIFGRVCRGMEVIKRLGS 141
            LDGKH +FG V  GM+V+K++ S
Sbjct: 121 WLDGKHVVFGHVIEGMDVVKKIES 144

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 10/143 (6%)
Query: 17  MGSFTVELYYKHSPRTCRNF-----AELSRRGY---YNNSKFHRIIKDFIVQXXXXXXX- 67
           +G   +EL+    P+T  NF      E  + G    Y  S FHR+IKDF++Q        
Sbjct: 24  VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83
Query: 68  XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                SIY   F DE   +L+H+  G+LSMAN+GP+TNG QFFIT +    LDGKH +FG
Sbjct: 84  GTGVASIYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFG 142
Query: 128 RVCRGMEVIKRLGSVQTDKDDRP 150
           ++  G+ V++++ +V T  +++P
Sbjct: 143 KIIDGLLVMRKIENVPTGPNNKP 165

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Query: 14  ETSMGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQXXXXXX-XXX 69
           E S+G   ++L     P+T +NF  L  R     Y  S FHRII  F+VQ          
Sbjct: 38  EESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGT 97
Query: 70  XXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRV 129
              SIYG  F DE   ELKHT  GILSMAN G +TNGSQFFITL     LD KH +FG V
Sbjct: 98  GGRSIYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEV 156
Query: 130 CRGMEVIKRL 139
             GM+V+ ++
Sbjct: 157 VEGMDVVHKI 166

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 80/159 (50%), Gaps = 13/159 (8%)
Query: 14  ETSMGSFTVELYYKHSPRTCRNFAEL--SRRGY--------YNNSKFHRIIKDFIVQXXX 63
           +T  G  T+EL+    P T  NF  L    +G         Y  S FHRII  F++Q   
Sbjct: 30  QTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGD 89
Query: 64  XXXX-XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGK 122
                     SIYG  F DE      H    +LSMANAGPNTNGSQFFIT  P   LDGK
Sbjct: 90  FTRGDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGK 148
Query: 123 HTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
           H +FG+V  GMEV+K +    + ++ +P   V I  + V
Sbjct: 149 HVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASGV 186

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score = 99.4 bits (246), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 30  PRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXXSIYGHVFEDEIKP 85
           P T  NF  L    +G+ +  S FHRII  F+ Q             SIYG  F+DE   
Sbjct: 38  PMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDE-NF 96
Query: 86  ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTD 145
            LKHTG G+LSMAN+GPNTNGSQFF+T      LDGKH +FG V  G++V++++   Q  
Sbjct: 97  ILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI-EAQGS 155
Query: 146 KDDRPIHDVKI 156
           KD +P   V I
Sbjct: 156 KDGKPKQKVII 166

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 30  PRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXXSIYGHVFEDEIKP 85
           P T  NF  L    +G+ +  S FHRII  F+ Q             SIYG  F+DE   
Sbjct: 30  PMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDE-NF 88
Query: 86  ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTD 145
            LKHTG G+LSMAN+GPNTNGSQFF+T      LDGKH +FG V  G++V++++   Q  
Sbjct: 89  ILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI-EAQGS 147
Query: 146 KDDRPIHDVKI 156
           KD +P   V I
Sbjct: 148 KDGKPKQKVII 158

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 99.0 bits (245), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 12/142 (8%)
Query: 15  TSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQX--------XXXXX 66
           T+ GS  +EL+   +PR C +F  L    Y++++ FHR I++F++Q              
Sbjct: 13  TTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 67  XXXXXXSIYGHV----FEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGK 122
                 SI G      FEDE    L H G G+LSMAN G ++N S+FFIT     HL+ K
Sbjct: 73  VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132
Query: 123 HTIFGRVCRGMEVIKRLGSVQT 144
           HTIFGRV  G++V+++   ++T
Sbjct: 133 HTIFGRVVGGLDVLRQWEKLET 154

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 17  MGSFTVELYYKHSPRTCRNFAEL--SRRGY-YNNSKFHRIIKDFIVQXXX-XXXXXXXXX 72
           +G    +LY    P+T  NF  L    +G+ Y  S FHR+I DF++Q             
Sbjct: 15  IGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  F DE   +  H   G+LSMANAGPNTNGSQFFIT  P   LDGKH +FG V  G
Sbjct: 75  SIYGGKFPDE-NFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDG 133
Query: 133 MEVIKRLGSVQT 144
            +++K++ S+ +
Sbjct: 134 YDIVKKVESLGS 145

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 20/163 (12%)
Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRG---------------YYNNSKFHRIIK 55
            TL T+ G   + L+  H+P+T  NF  L++                 +Y+ + FHR+I+
Sbjct: 26  ATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQ 85
Query: 56  DFIVQXXXXXXXXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAP 115
            F++Q                + F DE  PEL+     +L+MANAGP TNGSQFFIT+  
Sbjct: 86  GFMIQGGDPTGTGRGGPG---YKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGK 142
Query: 116 ASHLDGKHTIFGRV--CRGMEVIKRLGSVQTDKDDRPIHDVKI 156
             HL+ +HTIFG V       V++ +    TD +DRP   V I
Sbjct: 143 TPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 22/176 (12%)
Query: 10  EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXX--XXXXX 67
           +V L TS+G   VEL+ +  P  CRNF +L   GYY N+ FHR++KDFIVQ         
Sbjct: 23  KVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGR 82
Query: 68  XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPN--------------TNGSQFFITL 113
                +  G  F+ E  P LK    G++ +AN G +              TNG+QFFITL
Sbjct: 83  GGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITL 142
Query: 114 APASHLDGKHTIFGRVC-RGMEVIKRLGSVQTDKDDRP-----IHDVKILRTSVKD 163
           A A  L+  +T+FG+V    +  + +   ++  K+DRP     I  V +L    +D
Sbjct: 143 ARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPFED 198

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 30  PRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQXXXXXX-XXXXXXSIYGHVFEDEIKP 85
           P T  NF  L    +G+ +  S FHRII  F  Q             SIYG  F+DE   
Sbjct: 39  PXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDE-NF 97
Query: 86  ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTD 145
            LKHTG G+LS AN+GPNTNGSQFF+T      LDGKH +FG V  G++V++++   Q  
Sbjct: 98  ILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI-EAQGS 156
Query: 146 KDDRPIHDVKI 156
           KD +P   V I
Sbjct: 157 KDGKPKQKVII 167

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 10/122 (8%)
Query: 17  MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQXXXXXX-X 67
           +G F  EL+    P+T  NF +     Y        Y N+ FHR+IK+F++Q        
Sbjct: 73  LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 132
Query: 68  XXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
                SIYG  F+DE   ++KH   G+LSMAN+GPNTNG QFFIT      LDGK+ +FG
Sbjct: 133 GSGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFG 191
Query: 128 RV 129
           R+
Sbjct: 192 RI 193

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 7   GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXX 66
           G P V L TS G+  +EL  + +P + +NF +    G+YNN+ FHR+I  F++Q      
Sbjct: 3   GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE 62
Query: 67  XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD-GK--- 122
                        ++E    L++T   I     A  ++  SQFFI +A  + LD G+   
Sbjct: 63  QMQQKKP--NPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 123 -HTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV 154
            + +FG+V +GM+V  ++  V       P HDV
Sbjct: 121 GYAVFGKVVKGMDVADKISQV-------PTHDV 146

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 7   GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXX 66
           G P V L TS G+  +EL  + +P + +NF +    G+YNN+ FHR+I  F++Q      
Sbjct: 3   GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE 62
Query: 67  XXXXXXSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD-GK--- 122
                        ++E    L++T   I     A  ++  SQFFI +A  + LD G+   
Sbjct: 63  QMQQKKP--NPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 123 -HTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV 154
            + +FG+V +GM+V  ++  V       P HDV
Sbjct: 121 GYAVFGKVVKGMDVADKISQV-------PTHDV 146

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 46/179 (25%)
Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
           + L+T+ G+ T++L+   +P T  NF +  + G+Y+ + FHR+I  F++Q          
Sbjct: 2   IKLQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQ---------- 51
Query: 71  XXSIYGHVFEDEIKPELKHTGAGILSMANAG---------------PNTNGSQFFITL-- 113
                G  FE  +K   K T A I + AN G               P++  +QFFI +  
Sbjct: 52  -----GGGFEPGMKQ--KSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKD 104
Query: 114 -------APASHLDGKHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSV 161
                  AP +H  G + +FG V  G +V+ R+ SV T       D P+ DV I +  +
Sbjct: 105 NAFLDHTAPTAHGWG-YAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVIIEKAEI 162

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 16/166 (9%)
Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
           VT  T+ G   ++ +   +P T +NF +  R G+YNN+ FHR+I  F++Q          
Sbjct: 2   VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 71  XXSIYGHVFEDEIKPELKHTGAGILSMA-NAGPNTNGSQFFITLAPASHLD--------G 121
             +      ++E    LK+T  G L+MA    P++  +QFFI +     L+         
Sbjct: 62  KAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118
Query: 122 KHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSVKD 163
            + +F  V  GM+V+ ++  V T +     D P  DV I   +V +
Sbjct: 119 GYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE 164

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
           VT  T+ G   ++ +   +P T +NF +  R G+YNN+ FHR+I  F++Q          
Sbjct: 2   VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 71  XXSIYGHVFEDEIKPELKHTGAGILSMA-NAGPNTNGSQFFITLAPASHLD--------G 121
             +      ++E    LK+T  G L+MA    P++  +QFFI +     L+         
Sbjct: 62  KAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118
Query: 122 KHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSVKD 163
            + +F  V  GM+ + ++  V T +     D P  DV I   +V +
Sbjct: 119 GYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE 164

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 44/178 (24%)
Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQXXXXXXXXXX 70
           V L T+ G   +EL    +P+T  NF    ++G+Y+ + FHR+I  F++Q          
Sbjct: 6   VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQ---------- 55
Query: 71  XXSIYGHVFEDEIKPELKHTGAGILSMANAG---------------PNTNGSQFFITLAP 115
                G  FE  +K   K T A I + AN G               P++  +QFFI +  
Sbjct: 56  -----GGGFEPGLK--QKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVND 108
Query: 116 ASHLD--------GKHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSV 161
              L+          + +FG+V  G +++ ++ +V+T       D P  DV I +  V
Sbjct: 109 NEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEKAVV 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	1e-101
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	1e-101
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	1e-100
2b71_A	196	Cyclophilin-like protein; structural genomics, str	2e-98
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	5e-98
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	3e-97
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	8e-97
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	9e-97
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	1e-95
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	6e-94
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	2e-89
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	2e-86
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	9e-67
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	2e-66
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	5e-66
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	7e-65
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	2e-63
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-62
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-61
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-61
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-61
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	2e-61
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	8e-61
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	9e-61
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-60
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	2e-60
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	2e-60
1z81_A	229	Cyclophilin; structural genomics, structural genom	3e-60
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	6e-60
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-59
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	7e-59
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	2e-58
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-57
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	6e-57
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	3e-45

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  287 bits (736), Expect = e-101
 Identities = 107/155 (69%), Positives = 131/155 (84%)

Query: 8   PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGT 67
           PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++QGGDPTGT
Sbjct: 11  PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70

Query: 68  GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
           GRGG SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct: 71  GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130

Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVK 162
           RVC+G+ ++ R+G V+T+  DRP+ DVKI++    
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS 165

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  285 bits (732), Expect = e-101
 Identities = 76/156 (48%), Positives = 105/156 (67%)

Query: 8   PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGT 67
           P    + T+MG   + L+YK   +T +NF+  S  GYYNN  FHR+IK F+VQ GDP+G 
Sbjct: 5   PKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGD 64

Query: 68  GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
           G GG+SI+G+ FEDE    L H+   ++SMAN GPNTNGSQFFIT  P   LD KHT+FG
Sbjct: 65  GTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFG 124

Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           +V +G +++  +  V+TDK D+P+ D+KIL   + +
Sbjct: 125 KVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN 160

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  285 bits (732), Expect = e-100
 Identities = 107/156 (68%), Positives = 131/156 (83%)

Query: 8   PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGT 67
           PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++QGGDPTGT
Sbjct: 11  PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70

Query: 68  GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
           GRGG SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct: 71  GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130

Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD 163
           RVC+G+ ++ R+G V+T+  DRP+ DVKI++     
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSG 166

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  281 bits (720), Expect = 2e-98
 Identities = 97/151 (64%), Positives = 118/151 (78%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
           +T+ T++G F VELY+ HSP+TC NF  L   G+Y+N+ FHR+I +F++QGGDPTGTG+G
Sbjct: 41  ITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG 100

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G SIYG  FEDEI  ELKHTGAGILSM+N GPNTN SQFFITLAP  HLDGKHTIF RV 
Sbjct: 101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVS 160

Query: 131 RGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
           + M  I+ + SVQT   ++PI D+KILRTS 
Sbjct: 161 KNMTCIENIASVQTTATNKPIFDLKILRTST 191

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  278 bits (714), Expect = 5e-98
 Identities = 77/154 (50%), Positives = 100/154 (64%), Gaps = 1/154 (0%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
           VTL T +G   +E++ + +P+TC NF  L    YYN   FHR IK F+VQ GDPTGTGRG
Sbjct: 3   VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G+SI+G  FEDE    LKH   G++SMAN GPNTNGSQFFIT     HLD K+T+FG+V 
Sbjct: 63  GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI 122

Query: 131 RGMEVIKRLGSVQTD-KDDRPIHDVKILRTSVKD 163
            G+E +  L  +  + K  RP++DV I   ++  
Sbjct: 123 DGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA 156

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  277 bits (710), Expect = 3e-97
 Identities = 82/153 (53%), Positives = 103/153 (67%), Gaps = 1/153 (0%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
             + TSMG    +L+    P+T  NF   SR GYYN   FHRIIK F++Q GDPTGTG G
Sbjct: 24  AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMG 83

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G+SI+G  FEDE    L+H     LSMANAG NTNGSQFFIT+ P   LD KHT+FGRV 
Sbjct: 84  GESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVT 143

Query: 131 RGMEVIKRLGSVQTD-KDDRPIHDVKILRTSVK 162
           +GMEV++R+ +V+ + K D+P  DV I+  +VK
Sbjct: 144 KGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 176

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  276 bits (708), Expect = 8e-97
 Identities = 74/154 (48%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 9   PEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTG 68
            +V L+T+ G   +EL+ K +P+ CRNF +L    YY+N+ FHR++  FIVQGGDPTGTG
Sbjct: 25  GKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTG 84

Query: 69  RGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGR 128
            GG+SIYG  F+DE    L+    G+++MANAG + NGSQFF TL  A  L+ KHTIFG+
Sbjct: 85  SGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGK 144

Query: 129 VCR-GMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
           V    +  + RL  V  D D+RP +  KI    V
Sbjct: 145 VTGDTVYNMLRLSEVDIDDDERPHNPHKIKSCEV 178

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  276 bits (708), Expect = 9e-97
 Identities = 75/157 (47%), Positives = 101/157 (64%), Gaps = 4/157 (2%)

Query: 9   PEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTG 68
             V + T+ G    EL+    P+ C+NF  LS  GYY N+ FH+ IK FI+QGGDPTGTG
Sbjct: 17  QGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTG 76

Query: 69  RGGDSIYGHVFEDEIKPELKHTGAGILSMANAG----PNTNGSQFFITLAPASHLDGKHT 124
           +GG+SIYG  F+DEI PELK+   GILSMA+ G    PNTNGSQFFIT +    L+G++ 
Sbjct: 77  KGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYV 136

Query: 125 IFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
           IFG++  G E +  L +  +DK  +PI ++ I    +
Sbjct: 137 IFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVI 173

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  273 bits (701), Expect = 1e-95
 Identities = 78/152 (51%), Positives = 109/152 (71%), Gaps = 1/152 (0%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
           V L T+ G   +EL+   +P+TC NF  L ++ YY+ + FHR I++F++QGGDPTGTG G
Sbjct: 22  VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTG 81

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G+S +G  F+DE +P L HTG GILSMAN+GPN+N SQFFIT    ++LD KHTIFGRV 
Sbjct: 82  GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVV 141

Query: 131 RGMEVIKRLGSVQTD-KDDRPIHDVKILRTSV 161
            G +V+  + +V++D K DRP  +++I  T+V
Sbjct: 142 GGFDVLTAMENVESDPKTDRPKEEIRIDATTV 173

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  269 bits (691), Expect = 6e-94
 Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 12/163 (7%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGG-----DPT 65
           + + T+ GS  +EL+   +PR C +F  L    Y++++ FHR I++F++QGG      P+
Sbjct: 9   LRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPS 68

Query: 66  GTGRGGDSIY-------GHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASH 118
                  S         G  FEDE    L H G G+LSMAN G ++N S+FFIT     H
Sbjct: 69  KKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEH 128

Query: 119 LDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
           L+ KHTIFGRV  G++V+++   ++TDK D+P+   K+    V
Sbjct: 129 LNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEIIV 171

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  259 bits (663), Expect = 2e-89
 Identities = 70/168 (41%), Positives = 95/168 (56%), Gaps = 17/168 (10%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
           V L TS+G   VEL+ +  P  CRNF +L   GYY N+ FHR++KDFIVQGGDPTGTGRG
Sbjct: 24  VVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRG 83

Query: 71  GD--SIYGHVFEDEIKPELKHTGAGILSMANAGPN--------------TNGSQFFITLA 114
           G   +  G  F+ E  P LK    G++ +AN G +              TNG+QFFITLA
Sbjct: 84  GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLA 143

Query: 115 PASHLDGKHTIFGRVC-RGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
            A  L+  +T+FG+V    +  + +   ++  K+DRP+    I    V
Sbjct: 144 RADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDV 191

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  250 bits (640), Expect = 2e-86
 Identities = 69/178 (38%), Positives = 97/178 (54%), Gaps = 20/178 (11%)

Query: 1   MLASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRG---------------YY 45
           +  S       TL T+ G   + L+  H+P+T  NF  L++                 +Y
Sbjct: 16  VTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFY 75

Query: 46  NNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTN 105
           + + FHR+I+ F++QGGDPTGTGRGG    G+ F DE  PEL+     +L+MANAGP TN
Sbjct: 76  DGAVFHRVIQGFMIQGGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTN 132

Query: 106 GSQFFITLAPASHLDGKHTIFGRV--CRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
           GSQFFIT+    HL+ +HTIFG V       V++ +    TD +DRP   V I   ++
Sbjct: 133 GSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 190

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  200 bits (510), Expect = 9e-67
 Identities = 68/151 (45%), Positives = 91/151 (60%), Gaps = 13/151 (8%)

Query: 18  GSFTVELYYKHSPRTCRNFAEL-----------SRRGYYNNSKFHRIIKDFIVQGGDPT- 65
           G    EL+    P+TC NF  L            +  +Y +  FHR++KDF+VQGGD + 
Sbjct: 24  GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 83

Query: 66  GTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTI 125
           G GRGG+SIYG  FEDE    +KH    +LSMAN G +TNGSQFFIT  P  HLDG H +
Sbjct: 84  GNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVV 142

Query: 126 FGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           FG+V  G EV++ + + +TD   +P  +V+I
Sbjct: 143 FGQVISGQEVVREIENQKTDAASKPFAEVRI 173

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  198 bits (507), Expect = 2e-66
 Identities = 70/152 (46%), Positives = 96/152 (63%), Gaps = 13/152 (8%)

Query: 17  MGSFTVELYYKHSPRTCRNFAELS-----------RRGYYNNSKFHRIIKDFIVQGGDPT 65
            G   +ELY   +PRTC NF  L            +  +Y  S FHR+IK+F++QGGD T
Sbjct: 20  AGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFT 79

Query: 66  -GTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
            G G GG+SIYG +F+DE +  +KH    ++SMAN GPNTNGSQFFIT  PA HL+  H 
Sbjct: 80  KGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHV 138

Query: 125 IFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           +FG+V  G EV+ ++  ++T+  +RP+ DV I
Sbjct: 139 VFGKVVSGQEVVTKIEYLKTNSKNRPLADVVI 170

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  198 bits (507), Expect = 5e-66
 Identities = 69/152 (45%), Positives = 96/152 (63%), Gaps = 13/152 (8%)

Query: 17  MGSFTVELYYKHSPRTCRNFAEL-----------SRRGYYNNSKFHRIIKDFIVQGGDPT 65
           +G    +L+    P+TC+NF  L            ++  Y  S FHR++K+F++QGGD +
Sbjct: 33  VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS 92

Query: 66  -GTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
            G G+GG+SIYG  F+DE    LKH  A +LSMAN G +TNGSQFFIT  PA HLDG H 
Sbjct: 93  EGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHV 151

Query: 125 IFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           +FG V  G EVI+++ +++TD   RP  DV++
Sbjct: 152 VFGLVISGFEVIEQIENLKTDAASRPYADVRV 183

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  195 bits (498), Expect = 7e-65
 Identities = 61/149 (40%), Positives = 88/149 (59%), Gaps = 10/149 (6%)

Query: 17  MGSFTVELYYKHSPRTCRNFAEL-------SRRGY-YNNSKFHRIIKDFIVQGGDPT-GT 67
           +G   +EL+    P+T  NF +              Y  S FHR+IKDF++QGGD   G 
Sbjct: 24  VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83

Query: 68  GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
           G G  SIY   F DE   +L+H+  G+LSMAN+GP+TNG QFFIT +    LDGKH +FG
Sbjct: 84  GTGVASIYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFG 142

Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           ++  G+ V++++ +V T  +++P   V I
Sbjct: 143 KIIDGLLVMRKIENVPTGPNNKPKLPVVI 171

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  192 bits (489), Expect = 2e-63
 Identities = 76/144 (52%), Positives = 98/144 (68%), Gaps = 5/144 (3%)

Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGD 72
           +G     L+ K  P+T  NF  L+   +G+ Y NSKFHR+IKDF++QGGD T G G GG 
Sbjct: 29  VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK 88

Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  F DE   +LKH G G +SMANAG +TNGSQFFIT    + LDGKH +FG+V  G
Sbjct: 89  SIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEG 147

Query: 133 MEVIKRLGSVQTDKDDRPIHDVKI 156
           MEV++++ S +TD  D+P+ DV I
Sbjct: 148 MEVVRKVESTKTDSRDKPLKDVII 171

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  196 bits (499), Expect = 1e-62
 Identities = 68/151 (45%), Positives = 86/151 (56%), Gaps = 14/151 (9%)

Query: 18  GSFTVELYYKHSPRTCRNFAELS-----------RRGYYNNSKFHRIIKDFIVQGGDPT- 65
           G   +EL+    P+T  NF  L            +  ++    FHRIIK F++QGGD + 
Sbjct: 30  GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSN 89

Query: 66  GTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTI 125
             G GG+SIYG  FEDE     KH   G+LSMANAG NTNGSQFFIT  P  HLDGKH +
Sbjct: 90  QNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVV 148

Query: 126 FGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           FG+V +GM V K L +V+    ++P     I
Sbjct: 149 FGQVIKGMGVAKILENVEVKG-EKPAKLCVI 178

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  186 bits (476), Expect = 1e-61
 Identities = 70/151 (46%), Positives = 83/151 (54%), Gaps = 12/151 (7%)

Query: 16  SMGSFTVELYYKHSPRTCRNFAELS--------RRGY-YNNSKFHRIIKDFIVQGGDPT- 65
           + G    EL+   +PRTC NF  L          +   Y NS FHRII  F+ QGGD T 
Sbjct: 16  NAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITN 75

Query: 66  GTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTI 125
           G G GG+SIYG  F DE    +KH   G+LSMANAGPNTN SQFFITL P   LDGKH +
Sbjct: 76  GNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVV 134

Query: 126 FGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           FG+V  GM V++ +              V I
Sbjct: 135 FGKVIEGMNVVREMEKEGAK-SGYVKRSVVI 164

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  187 bits (477), Expect = 1e-61
 Identities = 69/151 (45%), Positives = 83/151 (54%), Gaps = 13/151 (8%)

Query: 17  MGSFTVELYYKHSPRTCRNFAELS----------RRGYYNNSKFHRIIKDFIVQGGDPT- 65
            G  T+EL+    P T  NF  L           +   Y  S FHRII  F++QGGD T 
Sbjct: 33  AGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTR 92

Query: 66  GTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTI 125
           G G GG+SIYG  F DE      H    +LSMANAGPNTNGSQFFIT  P   LDGKH +
Sbjct: 93  GDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVV 151

Query: 126 FGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           FG+V  GMEV+K +    +  + +P   V I
Sbjct: 152 FGKVLEGMEVVKSIEKCGSQ-NGKPTKSVCI 181

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  186 bits (475), Expect = 1e-61
 Identities = 73/144 (50%), Positives = 95/144 (65%), Gaps = 6/144 (4%)

Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGD 72
           +G  T+ L+ K +P T  NF +L     G+ Y +S FHR+I++F++QGGD T   G GG 
Sbjct: 25  LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84

Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  F DE    +KH   G LSMANAGPNTNGSQFFIT AP   LDG+H +FG+V  G
Sbjct: 85  SIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDG 142

Query: 133 MEVIKRLGSVQTDKDDRPIHDVKI 156
           M+V+ R+   +T+  DRP+  VKI
Sbjct: 143 MDVVLRIEKTKTNSHDRPVKPVKI 166

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  186 bits (474), Expect = 2e-61
 Identities = 70/151 (46%), Positives = 90/151 (59%), Gaps = 13/151 (8%)

Query: 17  MGSFTVELYYKHSPRTCRNFAELS----------RRGYYNNSKFHRIIKDFIVQGGDPT- 65
            G   +ELY    P+T  NF  L           +  ++  SKFHRII +F++QGGD T 
Sbjct: 17  SGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTR 76

Query: 66  GTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTI 125
           G G GG+SIYG  F DE   + KHTG G+LSMANAGPNTNGSQFF+       LDGKH +
Sbjct: 77  GNGTGGESIYGEKFPDE-NFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVV 135

Query: 126 FGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           FGRV  G++V+K + S  +    +P+ D  I
Sbjct: 136 FGRVVEGLDVVKAVESNGSQ-SGKPVKDCMI 165

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  184 bits (470), Expect = 8e-61
 Identities = 70/144 (48%), Positives = 86/144 (59%), Gaps = 6/144 (4%)

Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGD 72
            G   +EL     PRT  NF  L    RG+ Y+N  FHR+I  F+ QGGD   G G GG 
Sbjct: 24  AGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGK 83

Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  F+DE   +L+H G G+LSMAN+GPNTNGSQFFI       LDGKH +FGRV  G
Sbjct: 84  SIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDG 142

Query: 133 MEVIKRLGSVQTDKDDRPIHDVKI 156
             V+K++ SV + K  +    V I
Sbjct: 143 QNVVKKMESVGS-KSGKVKEPVII 165

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  185 bits (472), Expect = 9e-61
 Identities = 66/145 (45%), Positives = 85/145 (58%), Gaps = 6/145 (4%)

Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGD 72
           +G   ++L     P+T +NF  L    +G  Y  S FHRII  F+VQGGD T   G GG 
Sbjct: 41  LGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGR 100

Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  F DE   ELKHT  GILSMAN G +TNGSQFFITL     LD KH +FG V  G
Sbjct: 101 SIYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEG 159

Query: 133 MEVIKRLGSVQTDK-DDRPIHDVKI 156
           M+V+ ++    ++    +  + ++I
Sbjct: 160 MDVVHKIAKYGSESGQVKKGYRIEI 184

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  184 bits (469), Expect = 1e-60
 Identities = 68/144 (47%), Positives = 83/144 (57%), Gaps = 6/144 (4%)

Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGD 72
           +G   +EL     P+T  NF  L    +G+ Y  S FHR+I  F+ Q GD T   G GG 
Sbjct: 17  LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76

Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  F DE    LKH G G+LSMANAGPNTNGSQFFI       LDGKH +FG V  G
Sbjct: 77  SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEG 135

Query: 133 MEVIKRLGSVQTDKDDRPIHDVKI 156
           M+V+K++ S  + K  R    + I
Sbjct: 136 MDVVKKIESFGS-KSGRTSKKIVI 158

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  184 bits (469), Expect = 2e-60
 Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 6/144 (4%)

Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGD 72
            G   + L     P T  NF  L    +G+ +  S FHRII  F+ QGGD T   G GG 
Sbjct: 25  AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGK 84

Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  F+DE    LKHTG G+LSMAN+GPNTNGSQFF+T      LDGKH +FG V  G
Sbjct: 85  SIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEG 143

Query: 133 MEVIKRLGSVQTDKDDRPIHDVKI 156
           ++V++++ +  + KD +P   V I
Sbjct: 144 LDVLRQIEAQGS-KDGKPKQKVII 166

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  183 bits (467), Expect = 2e-60
 Identities = 66/144 (45%), Positives = 91/144 (63%), Gaps = 6/144 (4%)

Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGD 72
            G    +LY +  P+T +NF EL+  + G+ Y +S FHR+I  F++QGGD T   G GG 
Sbjct: 16  EGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGK 75

Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  F DE   ++KHT  G+LSMANAG NTNGSQFFIT  P S LDGKH +FG V  G
Sbjct: 76  SIYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEG 134

Query: 133 MEVIKRLGSVQTDKDDRPIHDVKI 156
           +++++++    +    +    +KI
Sbjct: 135 LDIVRKVEGKGSA-SGKTNATIKI 157

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  185 bits (471), Expect = 3e-60
 Identities = 58/152 (38%), Positives = 84/152 (55%), Gaps = 13/152 (8%)

Query: 17  MGSFTVELYYKHSPRTCRNFAELS--------RRGYYNNSKFHRIIKDFIVQGGDPT-GT 67
           +G F  EL+    P+T  NF +              Y N+ FHR+IK+F++QGGD     
Sbjct: 73  LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 132

Query: 68  GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
           G G  SIYG  F+DE   ++KH   G+LSMAN+GPNTNG QFFIT      LDGK+ +FG
Sbjct: 133 GSGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFG 191

Query: 128 RVCR--GMEVIKRLGSVQTD-KDDRPIHDVKI 156
           R+     + ++K++ +V       +P   + +
Sbjct: 192 RIIDNDSLLLLKKIENVSVTPYIYKPKIPINV 223

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  183 bits (466), Expect = 6e-60
 Identities = 70/144 (48%), Positives = 88/144 (61%), Gaps = 6/144 (4%)

Query: 17  MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGD 72
           +G  + EL+    P+T  NF  LS   +G+ Y  S FHRII  F+ QGGD T   G GG 
Sbjct: 36  LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 95

Query: 73  SIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG 132
           SIYG  FEDE    LKHTG GILSMANAGPNTNGSQFFI  A    LDGKH +FG+V  G
Sbjct: 96  SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEG 154

Query: 133 MEVIKRLGSVQTDKDDRPIHDVKI 156
           M +++ +    + ++ +    + I
Sbjct: 155 MNIVEAMERFGS-RNGKTSKKITI 177

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  182 bits (463), Expect = 1e-59
 Identities = 71/148 (47%), Positives = 85/148 (57%), Gaps = 8/148 (5%)

Query: 16  SMGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGG 71
            +G     L+ K  P+T +NF EL     G  Y  S FHRII +F++QGGD T G G GG
Sbjct: 20  KVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGG 79

Query: 72  DSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC- 130
            SIYG  F DE     KH   GILSMANAGPNTNGSQFFIT A  S LDGKH +FG V  
Sbjct: 80  RSIYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVAD 138

Query: 131 -RGMEVIKRLGSVQTDK-DDRPIHDVKI 156
            +   V+K + ++ +     R     KI
Sbjct: 139 EKSYSVVKEIEALGSSSGSVRSNTRPKI 166

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  179 bits (457), Expect = 7e-59
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 16/166 (9%)

Query: 9   PEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTG 68
             V L T+ G   +EL    +P+T  NF    ++G+Y+ + FHR+I  F++QGG      
Sbjct: 4   SMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGL 63

Query: 69  RGGDSIYGHVFEDEIKPELKHTGAGILSMA-NAGPNTNGSQFFITLAPASHLDGK----- 122
           +   +       +E    LK+     ++MA    P++  +QFFI +     L+       
Sbjct: 64  KQKPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQ 120

Query: 123 ---HTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSV 161
              + +FG+V  G +++ ++ +V+T       D P  DV I +  V
Sbjct: 121 GWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEKAVV 166

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  178 bits (454), Expect = 2e-58
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 16/166 (9%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
           VT  T+ G   ++ +   +P T +NF +  R G+YNN+ FHR+I  F++QGG      + 
Sbjct: 2   VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMA-NAGPNTNGSQFFITLAPASHLDGK------- 122
             +      ++E    LK+T  G L+MA    P++  +QFFI +     L+         
Sbjct: 62  KAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118

Query: 123 -HTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSVKD 163
            + +F  V  GM+ + ++  V T +     D P  DV I   +V +
Sbjct: 119 GYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE 164

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  179 bits (455), Expect = 1e-57
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 33/173 (19%)

Query: 17  MGSFTVELYYKHSPRTCRNFAEL--------------------SRRGYYNNSKFHRIIKD 56
           +G   ++L+    P    NF +L                         Y   KFH ++ +
Sbjct: 28  IGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHN 87

Query: 57  FIVQGGDPT-GTGRGGDSIYGHVFEDEIKP--ELKHTGAGILSMA----NAGPNTNGSQF 109
             +  GD     G    ++Y       +       H   G+LS+      +G     S F
Sbjct: 88  NYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTF 147

Query: 110 FITL------APASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
            ITL           LD    + G+V  G++V+ ++ S+      R      I
Sbjct: 148 MITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSI 200

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  174 bits (444), Expect = 6e-57
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 13/163 (7%)

Query: 9   PEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTG 68
           P V L TS G+  +EL  + +P + +NF +    G+YNN+ FHR+I  F++QGG  T   
Sbjct: 5   PHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQM 64

Query: 69  RGGDSIYGHVFEDEIKPELKHTGAGILSMA-NAGPNTNGSQFFITLAPASHLDG-----K 122
           +          ++E    L++T  G ++MA  A  ++  SQFFI +A  + LD       
Sbjct: 65  QQKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFG 121

Query: 123 HTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSV 161
           + +FG+V +GM+V  ++  V T       + P   V IL  +V
Sbjct: 122 YAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  150 bits (381), Expect = 3e-45
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 41/183 (22%)

Query: 9   PEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTG 68
            +         F + L   ++P T  NF +L  R +Y+  +  R    F+VQ GDP G  
Sbjct: 179 IKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSD-GFVVQTGDPEGPA 237

Query: 69  RGGDS---------------------IYGHVFED----EIKPELKHTGAGILSMANAG-- 101
            G                         YG   E+    + +  +     G ++MA     
Sbjct: 238 EGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFE 297

Query: 102 PNTNGSQFFI-------TLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV 154
            ++  SQ F        T + ++ LDG++ +FG V    + +  L        D  I  +
Sbjct: 298 NDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK-----VGDV-IESI 351

Query: 155 KIL 157
           +++
Sbjct: 352 QVV 354

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
2nnz_A	153	Hypothetical protein; beta-barrel, structural geno	96.89
3kop_A	188	Uncharacterized protein; protein with A cyclophili	95.58
1zx8_A	136	Hypothetical protein TM1367; structural genomics,	94.77

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=2.4e-56  Score=329.06  Aligned_cols=160  Identities=67%  Similarity=1.194  Sum_probs=153.4

Q ss_pred             CCCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCC
Q 031256            4 SDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEI   83 (163)
Q Consensus         4 ~~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~   83 (163)
                      +...++.|.|+|+.|+|+||||+++||++|+||++||+.+||+|+.||||+|+|++||||+.+++.++.++|+..+++|.
T Consensus         7 ~~~~~~~v~l~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~   86 (166)
T 2x7k_A            7 DSWQPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDEL   86 (166)
T ss_dssp             TTCCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCC
T ss_pred             cccCCCEEEEEeCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCcccccc
Confidence            33467899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEEcC
Q 031256           84 KPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD  163 (163)
Q Consensus        84 ~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~vl~  163 (163)
                      .+.++|.++|+||||+.+|++++|||||+++++++||++|+|||+|++|||||++|++.+++++++|.++|+|.+|.|+.
T Consensus        87 ~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~~~i~~  166 (166)
T 2x7k_A           87 HPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSG  166 (166)
T ss_dssp             CTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEEEEECC
T ss_pred             ccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEeC
Confidence            78999998999999999999999999999999999999999999999999999999999999889999999999999873

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=3.9e-56  Score=326.12  Aligned_cols=157  Identities=48%  Similarity=0.867  Sum_probs=150.7

Q ss_pred             CCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCC
Q 031256            7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPE   86 (163)
Q Consensus         7 ~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~   86 (163)
                      ..+.|.|+|+.|+|+||||+++||++|+||++||+.+||+|+.||||+|+|++||||+.+++.+++++|+..+++|..+.
T Consensus         4 ~~~~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~   83 (160)
T 2fu0_A            4 TPKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDH   83 (160)
T ss_dssp             -CCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCBTT
T ss_pred             CCCEEEEEecCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEeCCcCCCCCCCCcccCCCccccccCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999998778


Q ss_pred             CCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEEcC
Q 031256           87 LKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD  163 (163)
Q Consensus        87 l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~vl~  163 (163)
                      ++|.++|+||||+.+|++++|||||++.++++||++|+|||+|++|||||++|++.+++++++|.++|+|.+|.|++
T Consensus        84 l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~~  160 (160)
T 2fu0_A           84 LNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN  160 (160)
T ss_dssp             BCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC-
T ss_pred             cccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEeC
Confidence            99998999999999999999999999999999999999999999999999999999999889999999999999875

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=1.7e-55  Score=323.21  Aligned_cols=154  Identities=49%  Similarity=0.866  Sum_probs=149.0

Q ss_pred             EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 031256           10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKH   89 (163)
Q Consensus        10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~   89 (163)
                      +|.|+|+.|+|+||||+++||++|+||++||+.+||+|+.||||+|+|++||||+.+++.++.++|+..+++|..+.++|
T Consensus         2 ~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h   81 (161)
T 2ok3_A            2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKH   81 (161)
T ss_dssp             EEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTCCS
T ss_pred             EEEEEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCCCCCCCCcccCCccccccCcCcCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999998778999


Q ss_pred             CcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC-CCcccceEEEEEEEcC
Q 031256           90 TGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKD-DRPIHDVKILRTSVKD  163 (163)
Q Consensus        90 ~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~-~~p~~~i~I~~~~vl~  163 (163)
                      .++|+||||+.++++++|||||+++++++||++|+|||+|++||+||++|++.+++++ ++|.++|+|.+|+|++
T Consensus        82 ~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~  156 (161)
T 2ok3_A           82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA  156 (161)
T ss_dssp             CSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEec
Confidence            8899999999999999999999999999999999999999999999999999999887 9999999999999974

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=3.6e-55  Score=329.79  Aligned_cols=160  Identities=49%  Similarity=0.879  Sum_probs=153.9

Q ss_pred             CCCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCC
Q 031256            4 SDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEI   83 (163)
Q Consensus         4 ~~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~   83 (163)
                      .++....|.|+|+.|+|+||||+++||++|+||++||+.+||+|+.||||+|+|++||||+.+++.++.++|+..+++|.
T Consensus        15 ~~~~~~~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQgGd~~~~g~Gg~si~g~~f~dE~   94 (197)
T 1zkc_A           15 VPRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEF   94 (197)
T ss_dssp             CCCSCEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSCCCBTTBSCBCCCC
T ss_pred             CCCCCcEEEEEeCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEcCCCCCCCCCCCccCCCcccccc
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC-CCcccceEEEEEEEc
Q 031256           84 KPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKD-DRPIHDVKILRTSVK  162 (163)
Q Consensus        84 ~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~-~~p~~~i~I~~~~vl  162 (163)
                      ++.++|.++|+||||+.++++++|||||+++++++||++|+|||+|++||+||++|++++++.+ ++|.++|+|.+|+++
T Consensus        95 ~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~  174 (197)
T 1zkc_A           95 RPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF  174 (197)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEE
T ss_pred             CcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEE
Confidence            8899999999999999999999999999999999999999999999999999999999999887 999999999999987


Q ss_pred             C
Q 031256          163 D  163 (163)
Q Consensus       163 ~  163 (163)
                      +
T Consensus       175 ~  175 (197)
T 1zkc_A          175 V  175 (197)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=3.2e-55  Score=327.81  Aligned_cols=160  Identities=47%  Similarity=0.845  Sum_probs=151.9

Q ss_pred             CCCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCC
Q 031256            4 SDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEI   83 (163)
Q Consensus         4 ~~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~   83 (163)
                      ..+....|.|+|+.|+|+||||+++||++|+||++||+.+||+|+.||||+|+|++||||+.+++.++.++|+..+++|.
T Consensus        12 ~~~~~~~v~i~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~   91 (185)
T 2poe_A           12 ENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESIYGRYFDDEI   91 (185)
T ss_dssp             ---CCCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEEEETTSSSSCCCBTTBSCBCCCC
T ss_pred             cCCCceEEEEEecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCcccccc
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCcceEEEeeeCC----CCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEE
Q 031256           84 KPELKHTGAGILSMANAG----PNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT  159 (163)
Q Consensus        84 ~~~l~~~~~G~v~~~~~~----~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~  159 (163)
                      .+.++|.++|+||||+.+    |++++|||||+++++++||++|+|||+|++||+||++|++.+++.+++|.++|+|.+|
T Consensus        92 ~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~  171 (185)
T 2poe_A           92 YPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI  171 (185)
T ss_dssp             CTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEE
T ss_pred             cCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEE
Confidence            789999889999999998    9999999999999999999999999999999999999999999988999999999999


Q ss_pred             EEcC
Q 031256          160 SVKD  163 (163)
Q Consensus       160 ~vl~  163 (163)
                      ++++
T Consensus       172 ~i~~  175 (185)
T 2poe_A          172 VIHS  175 (185)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9974

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=3.3e-55  Score=329.97  Aligned_cols=157  Identities=62%  Similarity=1.038  Sum_probs=150.6

Q ss_pred             CCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCC
Q 031256            7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPE   86 (163)
Q Consensus         7 ~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~   86 (163)
                      .++.|.|+|+.|+|+||||+++||++|+||++||+.+||+|+.||||+|+|++||||+.+++.++.++|+..+++|..+.
T Consensus        37 ~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~  116 (196)
T 2b71_A           37 ERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKE  116 (196)
T ss_dssp             HSCEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSSCCCBTTBSCBCCCCCTT
T ss_pred             CCcEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCcccccccCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             CCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEEcC
Q 031256           87 LKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD  163 (163)
Q Consensus        87 l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~vl~  163 (163)
                      ++|.++|+||||+.+|++++|||||+++++++||++|+|||||++||+||++|++.+++.+++|.++|+|.+|+|++
T Consensus       117 l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~i~~  193 (196)
T 2b71_A          117 LKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAV  193 (196)
T ss_dssp             CCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEEC--
T ss_pred             cCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEEEec
Confidence            99988999999999999999999999999999999999999999999999999999999889999999999999874

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=8.9e-55  Score=323.11  Aligned_cols=159  Identities=52%  Similarity=0.876  Sum_probs=151.5

Q ss_pred             CCCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCC
Q 031256            4 SDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEI   83 (163)
Q Consensus         4 ~~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~   83 (163)
                      +......|.++|+.|+|+||||+++||++|+||++||+.+||+|+.||||+|+|++||||+.+++.++.++|+..+++|.
T Consensus        17 ~~~~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~   96 (176)
T 2a2n_A           17 PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEF   96 (176)
T ss_dssp             CCCCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCC
T ss_pred             CCCCCCEEEEEecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEccCCCCCCCCCCcccCCcccccc
Confidence            44557789999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCC-CCCCcccceEEEEEEEc
Q 031256           84 KPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTD-KDDRPIHDVKILRTSVK  162 (163)
Q Consensus        84 ~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~~p~~~i~I~~~~vl  162 (163)
                      .+.++|.++|+|+||+.++++++|||||++.++++||++|+|||+|++|||||++|++++++ .+++|.++|+|.+|.|.
T Consensus        97 ~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~v~  176 (176)
T 2a2n_A           97 HSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK  176 (176)
T ss_dssp             CTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEEC
T ss_pred             ccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEEEC
Confidence            77899998999999999999999999999999999999999999999999999999999998 68999999999999873

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=4.3e-55  Score=330.50  Aligned_cols=159  Identities=67%  Similarity=1.200  Sum_probs=152.9

Q ss_pred             CCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCC
Q 031256            5 DDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIK   84 (163)
Q Consensus         5 ~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~   84 (163)
                      ...++.|.|+|+.|+|+||||+++||++|+||++||+.+||+++.||||+|+|++||||+.+++.++.++|+..+++|..
T Consensus         8 ~~~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQgGd~~~~g~gg~si~g~~f~dE~~   87 (203)
T 2k7n_A            8 SWQPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELH   87 (203)
T ss_dssp             SCCCSEEEEEESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEEECSSSSSSCCCTTSCSCBCCCCC
T ss_pred             ccCCCEEEEEeCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCccccccc
Confidence            33678999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEEcC
Q 031256           85 PELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD  163 (163)
Q Consensus        85 ~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~vl~  163 (163)
                      +.++|.++|+|+||+.++++++|||||++.++++||++|+|||||++|||||++|++.+++++++|.++|+|.+|+|++
T Consensus        88 ~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~  166 (203)
T 2k7n_A           88 PDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSG  166 (203)
T ss_dssp             CSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEEEEECC
T ss_pred             ccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEEe
Confidence            8999998999999999999999999999999999999999999999999999999999998889999999999999975

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=1.4e-54  Score=328.49  Aligned_cols=159  Identities=38%  Similarity=0.673  Sum_probs=145.2

Q ss_pred             CCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecC-----CCCCCCCCCCCCC----
Q 031256            5 DDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGG-----DPTGTGRGGDSIY----   75 (163)
Q Consensus         5 ~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G-----~~~~~~~~~~~~~----   75 (163)
                      ++.+..|.|+|+.|+|+||||+++||+||+||++||+.+||+|+.||||+|+|++|||     |+.+++.++.++|    
T Consensus         3 ~~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~~~~   82 (201)
T 3bo7_A            3 LKKKGYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISG   82 (201)
T ss_dssp             --CCEEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGCCC-------CCSSCCCS
T ss_pred             CCCceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCcccccCCCCCCCCCcccccccc
Confidence            4567899999999999999999999999999999999999999999999999999999     9998899999999    


Q ss_pred             ---CCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCccc
Q 031256           76 ---GHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIH  152 (163)
Q Consensus        76 ---~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~  152 (163)
                         +..+++|.++.++|.++|+||||++++++++|||||+++++++||++|+|||+|++||+||++|++++++.+++|.+
T Consensus        83 ~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~  162 (201)
T 3bo7_A           83 FPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLK  162 (201)
T ss_dssp             STTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSS
T ss_pred             ccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCC
Confidence               88999998789999889999999999999999999999999999999999999999999999999999998899999


Q ss_pred             ceEEEEEEEcC
Q 031256          153 DVKILRTSVKD  163 (163)
Q Consensus       153 ~i~I~~~~vl~  163 (163)
                      +|+|.+|++++
T Consensus       163 ~i~I~~~~v~~  173 (201)
T 3bo7_A          163 PPKVEEIIVFK  173 (201)
T ss_dssp             CCBEEEEEEEE
T ss_pred             CeEEEEEEEEc
Confidence            99999999873

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=8e-54  Score=318.53  Aligned_cols=157  Identities=41%  Similarity=0.742  Sum_probs=148.9

Q ss_pred             CCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcCC--------cCCceEEEeecCceeecCCCC-CCCCC
Q 031256            5 DDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQGGDPT-GTGRG   70 (163)
Q Consensus         5 ~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~f~rv~~~~~iq~G~~~-~~~~~   70 (163)
                      .+.+++|+|+++     .|+|+||||++.||+||+||++||++++        |+|+.||||+|+|++||||+. +++.+
T Consensus         7 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~g   86 (177)
T 1mzw_A            7 SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTG   86 (177)
T ss_dssp             CCCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCC
T ss_pred             CCCCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCC
Confidence            346889999974     8999999999999999999999999998        999999999999999999986 78888


Q ss_pred             CCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCc
Q 031256           71 GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRP  150 (163)
Q Consensus        71 ~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p  150 (163)
                      +.++|+..|++| ...++|.++|+||||+.+|++++|||||+++++++||++|+|||+|++|||||++|++.+++++++|
T Consensus        87 g~si~g~~f~dE-~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P  165 (177)
T 1mzw_A           87 VASIYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP  165 (177)
T ss_dssp             CCCTTSSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             CCccCCCcccCc-ccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCC
Confidence            999999999999 4689999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             ccceEEEEEEEc
Q 031256          151 IHDVKILRTSVK  162 (163)
Q Consensus       151 ~~~i~I~~~~vl  162 (163)
                      .++|+|.+|++|
T Consensus       166 ~~~v~I~~cG~l  177 (177)
T 1mzw_A          166 KLPVVISQCGEM  177 (177)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeceeC
Confidence            999999999986

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=1.8e-53  Score=315.18  Aligned_cols=158  Identities=46%  Similarity=0.762  Sum_probs=146.2

Q ss_pred             CCCCCCEEEEE-----ecceEEEEEEcCCCChHHHHHHHHHHhc--CC-cCCceEEEeecCceeecCCCC-CCCCCCCCC
Q 031256            4 SDDGPPEVTLE-----TSMGSFTVELYYKHSPRTCRNFAELSRR--GY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGDSI   74 (163)
Q Consensus         4 ~~~~~~~v~~~-----ts~G~i~ieL~~~~aP~~~~nF~~l~~~--~~-y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~   74 (163)
                      .+..+++|+|+     |+.|+|+||||+++||++|+||++||++  +| |+|+.||||+|+|++||||+. +++.++.++
T Consensus         6 ~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si   85 (172)
T 2cmt_A            6 QKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSI   85 (172)
T ss_dssp             ---CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBT
T ss_pred             CCCCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCcc
Confidence            34568899999     6799999999999999999999999984  78 999999999999999999987 678889999


Q ss_pred             CCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccce
Q 031256           75 YGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV  154 (163)
Q Consensus        75 ~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i  154 (163)
                      |+..+++| ...++|.++|+||||+++|++++|||||++.++++||++|+|||+|++|||||++|++.++ .+++|.++|
T Consensus        86 ~g~~f~dE-~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v  163 (172)
T 2cmt_A           86 YGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGS-KSGKVKEPV  163 (172)
T ss_dssp             TBSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCC-TTCCCSSCE
T ss_pred             CCCccccc-ccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCCE
Confidence            99999999 4689999899999999999999999999999999999999999999999999999999887 568999999


Q ss_pred             EEEEEEEcC
Q 031256          155 KILRTSVKD  163 (163)
Q Consensus       155 ~I~~~~vl~  163 (163)
                      +|.+|++|+
T Consensus       164 ~I~~~g~l~  172 (172)
T 2cmt_A          164 IISRCGELI  172 (172)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEeEeEC
Confidence            999999985

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=1.2e-53  Score=320.51  Aligned_cols=157  Identities=44%  Similarity=0.769  Sum_probs=146.3

Q ss_pred             CCCCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHH---------------hcCCcCCceEEEeecCceeecCCCCCC
Q 031256            3 ASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS---------------RRGYYNNSKFHRIIKDFIVQGGDPTGT   67 (163)
Q Consensus         3 ~~~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~---------------~~~~y~g~~f~rv~~~~~iq~G~~~~~   67 (163)
                      .++..+..|.|+|+.|+|+||||+++||++|+||++||               +.+||+|+.||||+|+|++||||+.++
T Consensus        18 ~~~~~~~~v~l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~g~   97 (191)
T 1w74_A           18 NSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGT   97 (191)
T ss_dssp             ---CCSEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSS
T ss_pred             cCCCCCeEEEEEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCCCC
Confidence            36777899999999999999999999999999999999               458999999999999999999999877


Q ss_pred             CCCCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEc--CHHHHHHHhcCCCC
Q 031256           68 GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCR--GMEVIKRLGSVQTD  145 (163)
Q Consensus        68 ~~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~--G~~vl~~I~~~~~~  145 (163)
                      +.++   ++..|++|.++.++|.++|+||||+.+|++++|||||++.++++||++|+|||+|++  ||+||++|++++++
T Consensus        98 G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~  174 (191)
T 1w74_A           98 GRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATD  174 (191)
T ss_dssp             SSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBC
T ss_pred             CCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcC
Confidence            7766   578899998789999999999999999999999999999999999999999999999  99999999999999


Q ss_pred             CCCCcccceEEEEEEEc
Q 031256          146 KDDRPIHDVKILRTSVK  162 (163)
Q Consensus       146 ~~~~p~~~i~I~~~~vl  162 (163)
                      .+++|.++|+|.+|+|+
T Consensus       175 ~~~~P~~~v~I~~~~i~  191 (191)
T 1w74_A          175 GNDRPTDPVVIESITIS  191 (191)
T ss_dssp             TTSCBSSCCEEEEEEEC
T ss_pred             CCCCcCCCeEEEEEEEC
Confidence            88999999999999985

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=1.6e-53  Score=318.52  Aligned_cols=161  Identities=47%  Similarity=0.811  Sum_probs=152.2

Q ss_pred             CCCCCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCC
Q 031256            2 LASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFED   81 (163)
Q Consensus         2 ~~~~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~   81 (163)
                      ..+++.+++|+|+|+.|+|+||||+++||++|+||++||+.+||+|+.||||+|+|++||||+.+++.++.++|+..+++
T Consensus        18 ~~~~~~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~d   97 (185)
T 2hq6_A           18 GSEPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKD   97 (185)
T ss_dssp             TCCCCCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCC
T ss_pred             ccCCCCCCEEEEEeCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEcCCCCCCCCCCCcccCCcccc
Confidence            45677789999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             CCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHH--HHHHhcCCCCCCCCcccceEEEEE
Q 031256           82 EIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEV--IKRLGSVQTDKDDRPIHDVKILRT  159 (163)
Q Consensus        82 e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~v--l~~I~~~~~~~~~~p~~~i~I~~~  159 (163)
                      |..+.++|.++|+||||+.++++++|||||+++++++||++|+|||||+ ||++  +++|++++++++++|.++|+|.+|
T Consensus        98 E~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~  176 (185)
T 2hq6_A           98 EFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSC  176 (185)
T ss_dssp             CCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEE
T ss_pred             ccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEE
Confidence            9877899999999999999999999999999999999999999999999 8877  468999999899999999999999


Q ss_pred             EEcC
Q 031256          160 SVKD  163 (163)
Q Consensus       160 ~vl~  163 (163)
                      ++++
T Consensus       177 ~v~~  180 (185)
T 2hq6_A          177 EVLF  180 (185)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            9873

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=2e-53  Score=314.64  Aligned_cols=154  Identities=47%  Similarity=0.786  Sum_probs=146.3

Q ss_pred             CCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHh-cCC--------cCCceEEEeecCceeecCCCC-CCCCCC
Q 031256            7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSR-RGY--------YNNSKFHRIIKDFIVQGGDPT-GTGRGG   71 (163)
Q Consensus         7 ~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~-~~~--------y~g~~f~rv~~~~~iq~G~~~-~~~~~~   71 (163)
                      .+++|+|+++     .|+|+||||+++||+||+||++||+ .+|        |+|+.||||+|+|++||||+. +++.++
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg   81 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGG   81 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEEcCCccCCCCCCC
Confidence            5789999998     8999999999999999999999998 488        999999999999999999986 788889


Q ss_pred             CCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcc
Q 031256           72 DSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPI  151 (163)
Q Consensus        72 ~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~  151 (163)
                      .++|+..+++| ...++|.++|+||||+.+|++++|||||++.++++||++|+|||+|++|||||++|++.++ ++++|.
T Consensus        82 ~si~g~~f~dE-~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~  159 (170)
T 1qng_A           82 ESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVK  159 (170)
T ss_dssp             CBTTBSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCS
T ss_pred             ccccCCccccc-ccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCCC
Confidence            99999999999 4689999999999999999999999999999999999999999999999999999999998 678999


Q ss_pred             cceEEEEEEEc
Q 031256          152 HDVKILRTSVK  162 (163)
Q Consensus       152 ~~i~I~~~~vl  162 (163)
                      ++|+|.+|++|
T Consensus       160 ~~v~I~~cG~l  170 (170)
T 1qng_A          160 RSVVITDCGEL  170 (170)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCeEEEeceeC
Confidence            99999999986

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=2.9e-53  Score=315.65  Aligned_cols=157  Identities=47%  Similarity=0.816  Sum_probs=147.9

Q ss_pred             CCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhc--------C---CcCCceEEEeecCceeecCCCC-CCC
Q 031256            6 DGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRR--------G---YYNNSKFHRIIKDFIVQGGDPT-GTG   68 (163)
Q Consensus         6 ~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~--------~---~y~g~~f~rv~~~~~iq~G~~~-~~~   68 (163)
                      ..+++|+|+++     .|+|+||||++.||+||+||++||++        +   ||+|+.||||+|+|++||||+. +++
T Consensus         4 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g   83 (177)
T 1a58_A            4 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDG   83 (177)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSS
T ss_pred             CCCcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCC
Confidence            45789999975     79999999999999999999999984        3   8999999999999999999986 788


Q ss_pred             CCCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCC
Q 031256           69 RGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDD  148 (163)
Q Consensus        69 ~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~  148 (163)
                      .++.++|+..|++|. ..++|.++|+||||+.+|++++|||||++.++++||++|+|||+|++|||||++|++.+++.++
T Consensus        84 ~gg~si~g~~f~dE~-~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~  162 (177)
T 1a58_A           84 TGGESIYGGMFDDEE-FVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKN  162 (177)
T ss_dssp             SCCCCTTSSCBCCCC-CCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTS
T ss_pred             CCCCcccCCcccCcc-cCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCC
Confidence            889999999999994 5789999999999999999999999999999999999999999999999999999999999889


Q ss_pred             CcccceEEEEEEEcC
Q 031256          149 RPIHDVKILRTSVKD  163 (163)
Q Consensus       149 ~p~~~i~I~~~~vl~  163 (163)
                      +|.++|+|.+|++|.
T Consensus       163 ~P~~~v~I~~~G~l~  177 (177)
T 1a58_A          163 RPLADVVILNCGELV  177 (177)
T ss_dssp             CBSSCEEEEEEEEEC
T ss_pred             cCCCCeEEEEeEEEC
Confidence            999999999999974

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=4.3e-53  Score=315.12  Aligned_cols=157  Identities=45%  Similarity=0.778  Sum_probs=146.8

Q ss_pred             CCCCCEEEEEe-----cceEEEEEEcCCCChHHHHHHHHHHh-----------cCCcCCceEEEeecCceeecCCCC-CC
Q 031256            5 DDGPPEVTLET-----SMGSFTVELYYKHSPRTCRNFAELSR-----------RGYYNNSKFHRIIKDFIVQGGDPT-GT   67 (163)
Q Consensus         5 ~~~~~~v~~~t-----s~G~i~ieL~~~~aP~~~~nF~~l~~-----------~~~y~g~~f~rv~~~~~iq~G~~~-~~   67 (163)
                      ...+++|+|+.     +.|+|+||||++.||+||+||++||+           .+||+|+.||||+|+|++||||+. ++
T Consensus         6 ~~~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~   85 (179)
T 2wfi_A            6 KVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGN   85 (179)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCC
Confidence            34588999986     48999999999999999999999996           568999999999999999999986 78


Q ss_pred             CCCCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC
Q 031256           68 GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKD  147 (163)
Q Consensus        68 ~~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~  147 (163)
                      +.++.++|+..+++| ...++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++.+++++
T Consensus        86 g~gg~si~g~~f~dE-~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~  164 (179)
T 2wfi_A           86 GRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAA  164 (179)
T ss_dssp             SSCCCCTTSSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTT
T ss_pred             CCCCCcccCCccccc-ccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCC
Confidence            888999999999999 4678999999999999999999999999999999999999999999999999999999999989


Q ss_pred             CCcccceEEEEEEEc
Q 031256          148 DRPIHDVKILRTSVK  162 (163)
Q Consensus       148 ~~p~~~i~I~~~~vl  162 (163)
                      ++|.++|+|.+|++|
T Consensus       165 ~~P~~~v~I~~~G~l  179 (179)
T 2wfi_A          165 SKPFAEVRILSCGEL  179 (179)
T ss_dssp             SCBSSCEEEEEEEEC
T ss_pred             CCCCCCeEEEeCeeC
Confidence            999999999999986

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=2e-53  Score=314.67  Aligned_cols=157  Identities=46%  Similarity=0.836  Sum_probs=149.0

Q ss_pred             CCCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHH--hcCC-cCCceEEEeecCceeecCC-CCCCCCCCCCC
Q 031256            4 SDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELS--RRGY-YNNSKFHRIIKDFIVQGGD-PTGTGRGGDSI   74 (163)
Q Consensus         4 ~~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~--~~~~-y~g~~f~rv~~~~~iq~G~-~~~~~~~~~~~   74 (163)
                      ++..+++|+|+.+     .|+|+||||+++||++|+||++||  +.+| |+|+.||||+|+|++|||| +.+++.++.++
T Consensus         7 ~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si   86 (172)
T 2haq_A            7 EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSI   86 (172)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCS
T ss_pred             CCCCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCccc
Confidence            6788999999865     799999999999999999999999  6889 9999999999999999999 55788889999


Q ss_pred             CCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccce
Q 031256           75 YGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV  154 (163)
Q Consensus        75 ~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i  154 (163)
                      |+..+++| ++.++|. +|+||||+.++++++|||||+++++++||++|+|||+|++||+||++|++.+++++++|.++|
T Consensus        87 ~g~~f~dE-~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v  164 (172)
T 2haq_A           87 YGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPV  164 (172)
T ss_dssp             SSSCBCCC-CCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCE
T ss_pred             cCCcccCc-CCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCe
Confidence            99999999 6789999 999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             EEEEEEEc
Q 031256          155 KILRTSVK  162 (163)
Q Consensus       155 ~I~~~~vl  162 (163)
                      +|.+|++|
T Consensus       165 ~I~~~g~l  172 (172)
T 2haq_A          165 KIVASGEL  172 (172)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEeEEC
Confidence            99999986

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=3e-53  Score=314.47  Aligned_cols=155  Identities=46%  Similarity=0.804  Sum_probs=146.1

Q ss_pred             CCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhc--C--------CcCCceEEEeecCceeecCCCC-CCCCC
Q 031256            7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRR--G--------YYNNSKFHRIIKDFIVQGGDPT-GTGRG   70 (163)
Q Consensus         7 ~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~--~--------~y~g~~f~rv~~~~~iq~G~~~-~~~~~   70 (163)
                      .+++|+|+++     .|+|+||||++.||+||+||++||++  +        ||+|+.||||+|+|++||||+. +++.+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~g   81 (173)
T 2igv_A            2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTG   81 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCC
Confidence            3689999998     89999999999999999999999986  5        7999999999999999999987 67888


Q ss_pred             CCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCc
Q 031256           71 GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRP  150 (163)
Q Consensus        71 ~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p  150 (163)
                      +.++|+..+++| ...++|.++|+||||+.+|++++|||||++.++++||++|+|||+|++|||||++|++.++ .+++|
T Consensus        82 g~siyg~~f~dE-~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P  159 (173)
T 2igv_A           82 GESIYGEKFPDE-NFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKP  159 (173)
T ss_dssp             CCBTTBSCBCCC-CCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCC
T ss_pred             CCccCCCcccCc-ccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCC-CCCCC
Confidence            999999999999 4689999999999999999999999999999999999999999999999999999999987 56899


Q ss_pred             ccceEEEEEEEcC
Q 031256          151 IHDVKILRTSVKD  163 (163)
Q Consensus       151 ~~~i~I~~~~vl~  163 (163)
                      .++|+|.+|++|+
T Consensus       160 ~~~v~I~~~g~l~  172 (173)
T 2igv_A          160 VKDCMIADCGQLK  172 (173)
T ss_dssp             SSCEEEEEEEEEC
T ss_pred             CCCEEEEEeEEEc
Confidence            9999999999985

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=5.1e-53  Score=311.03  Aligned_cols=155  Identities=43%  Similarity=0.772  Sum_probs=145.3

Q ss_pred             CCCEEEEE-----ecceEEEEEEcCCCChHHHHHHHHHHh--cCC-cCCceEEEeecCceeecCC-CCCCCCCCCCCCCC
Q 031256            7 GPPEVTLE-----TSMGSFTVELYYKHSPRTCRNFAELSR--RGY-YNNSKFHRIIKDFIVQGGD-PTGTGRGGDSIYGH   77 (163)
Q Consensus         7 ~~~~v~~~-----ts~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~-~~~~~~~~~~~~~~   77 (163)
                      .+++|+|+     |+.|+|+||||+++||+||+||++||+  .+| |+|+.|||++|+|++|||| +.+++.++.++|+.
T Consensus         1 ~~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~   80 (164)
T 3pmp_A            1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGE   80 (164)
T ss_dssp             CCCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBS
T ss_pred             CCCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCc
Confidence            36788887     668999999999999999999999999  788 9999999999999999999 55788899999999


Q ss_pred             cCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEE
Q 031256           78 VFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL  157 (163)
Q Consensus        78 ~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~  157 (163)
                      .+++| ++.++|.++|+||||+.++++++|||||++.++++||++|+|||||++||+||++|++.+++ +++|.++|+|.
T Consensus        81 ~~~dE-~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~P~~~v~I~  158 (164)
T 3pmp_A           81 KFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKIT  158 (164)
T ss_dssp             CBCCC-CCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEE
T ss_pred             ccccc-ccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCCcccCEEEE
Confidence            99999 67899998999999999999999999999999999999999999999999999999999985 78999999999


Q ss_pred             EEEEcC
Q 031256          158 RTSVKD  163 (163)
Q Consensus       158 ~~~vl~  163 (163)
                      +|++|+
T Consensus       159 ~cg~l~  164 (164)
T 3pmp_A          159 DCGTVA  164 (164)
T ss_dssp             EEEEC-
T ss_pred             eCeEEC
Confidence            999985

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=6.1e-53  Score=312.72  Aligned_cols=158  Identities=43%  Similarity=0.744  Sum_probs=145.6

Q ss_pred             CCCCCCEEEEE-----ecceEEEEEEcCCCChHHHHHHHHHHh--cCC-cCCceEEEeecCceeecCCCC-CCCCCCCCC
Q 031256            4 SDDGPPEVTLE-----TSMGSFTVELYYKHSPRTCRNFAELSR--RGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGDSI   74 (163)
Q Consensus         4 ~~~~~~~v~~~-----ts~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~   74 (163)
                      .+..+++|+|+     |+.|+|+||||+++||++|+||++||+  .+| |+|+.||||+|+|++||||+. +++.++.++
T Consensus         7 ~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si   86 (173)
T 2r99_A            7 KARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSI   86 (173)
T ss_dssp             ---CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBT
T ss_pred             cccCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCcc
Confidence            34568899999     578999999999999999999999995  677 999999999999999999987 678888999


Q ss_pred             CCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccce
Q 031256           75 YGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV  154 (163)
Q Consensus        75 ~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i  154 (163)
                      |+..|++| ...++|.++|+||||+.++++++|||||++.++++||++|+|||+|++|||||++|++.+++ +++|.++|
T Consensus        87 ~g~~f~dE-~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v  164 (173)
T 2r99_A           87 YGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPKQKV  164 (173)
T ss_dssp             TBSCBCCC-CCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCE
T ss_pred             CCCcccCc-ccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCe
Confidence            99999999 56899999999999999999999999999999999999999999999999999999999874 58999999


Q ss_pred             EEEEEEEcC
Q 031256          155 KILRTSVKD  163 (163)
Q Consensus       155 ~I~~~~vl~  163 (163)
                      +|.+|++|+
T Consensus       165 ~I~~cG~l~  173 (173)
T 2r99_A          165 IIADCGEYV  173 (173)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEeeeEC
Confidence            999999984

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=9e-53  Score=309.80  Aligned_cols=154  Identities=46%  Similarity=0.775  Sum_probs=145.7

Q ss_pred             CCEEEEEe-----cceEEEEEEcCCCChHHHHHHHHHHh--cCC-cCCceEEEeecCceeecCCCC-CCCCCCCCCCCCc
Q 031256            8 PPEVTLET-----SMGSFTVELYYKHSPRTCRNFAELSR--RGY-YNNSKFHRIIKDFIVQGGDPT-GTGRGGDSIYGHV   78 (163)
Q Consensus         8 ~~~v~~~t-----s~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~~~~   78 (163)
                      +++|+|++     +.|+|+||||+++||+||+||++||+  .+| |+|+.||||+|+|++||||+. +++.++.++|+..
T Consensus         3 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~   82 (165)
T 2z6w_A            3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR   82 (165)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred             CCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCc
Confidence            68999998     47999999999999999999999999  899 999999999999999999996 6788889999999


Q ss_pred             CCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEE
Q 031256           79 FEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILR  158 (163)
Q Consensus        79 ~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~  158 (163)
                      +++| .+.++|.++|+||||+.+|++++|||||++.++++||++|+|||+|++|||||++|++.++ .+++|.++|+|.+
T Consensus        83 f~dE-~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~  160 (165)
T 2z6w_A           83 FPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITD  160 (165)
T ss_dssp             BCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEE
T ss_pred             ccCc-ccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCcEEEEE
Confidence            9999 5789999899999999999999999999999999999999999999999999999999885 6789999999999


Q ss_pred             EEEcC
Q 031256          159 TSVKD  163 (163)
Q Consensus       159 ~~vl~  163 (163)
                      |++|.
T Consensus       161 ~g~l~  165 (165)
T 2z6w_A          161 CGQLS  165 (165)
T ss_dssp             EEECC
T ss_pred             eEEEC
Confidence            99974

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-52  Score=314.25  Aligned_cols=158  Identities=46%  Similarity=0.825  Sum_probs=146.8

Q ss_pred             CCCCCEEEEEe-----cceEEEEEEcCCCChHHHHHHHHHHh-----------cCCcCCceEEEeecCceeecCCCC-CC
Q 031256            5 DDGPPEVTLET-----SMGSFTVELYYKHSPRTCRNFAELSR-----------RGYYNNSKFHRIIKDFIVQGGDPT-GT   67 (163)
Q Consensus         5 ~~~~~~v~~~t-----s~G~i~ieL~~~~aP~~~~nF~~l~~-----------~~~y~g~~f~rv~~~~~iq~G~~~-~~   67 (163)
                      ...+++|+|+.     +.|+|+||||++.||+||+||++||+           .+||+|+.||||+|+|++||||+. ++
T Consensus        16 ~~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~   95 (192)
T 2he9_A           16 PRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGN   95 (192)
T ss_dssp             ---CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSS
T ss_pred             ccCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCC
Confidence            35678999987     47999999999999999999999995           578999999999999999999986 78


Q ss_pred             CCCCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC
Q 031256           68 GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKD  147 (163)
Q Consensus        68 ~~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~  147 (163)
                      +.++.++|+..|++| ...++|.++|+||||+.+|++++|||||++.++++||++|+|||+|++|||||++|++.+++++
T Consensus        96 G~gg~siyg~~f~dE-~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~  174 (192)
T 2he9_A           96 GKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAA  174 (192)
T ss_dssp             SSCCCCTTSSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTT
T ss_pred             CCCCCcccCCcccCc-cccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCC
Confidence            889999999999999 4678999999999999999999999999999999999999999999999999999999999989


Q ss_pred             CCcccceEEEEEEEcC
Q 031256          148 DRPIHDVKILRTSVKD  163 (163)
Q Consensus       148 ~~p~~~i~I~~~~vl~  163 (163)
                      ++|.++|+|.+|+++.
T Consensus       175 ~~P~~~v~I~~~g~l~  190 (192)
T 2he9_A          175 SRPYADVRVIDCGVLA  190 (192)
T ss_dssp             SCBSSCEEEEEEEECC
T ss_pred             CCCcCCeEEEEeEEEc
Confidence            9999999999999974

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=1.6e-52  Score=313.10  Aligned_cols=157  Identities=45%  Similarity=0.748  Sum_probs=146.1

Q ss_pred             CCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcCC---cCCceEEEeecCceeecCCCC-CCCCCCCCCC
Q 031256            5 DDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQGGDPT-GTGRGGDSIY   75 (163)
Q Consensus         5 ~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~~---y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~   75 (163)
                      +..+++|+|+|+     .|+|+||||++.||++|+||++||+.++   |+|+.||||+|+|++||||+. +++.++.++|
T Consensus        19 ~~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~   98 (184)
T 3rdd_A           19 GMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIY   98 (184)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             cCCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCCcccC
Confidence            456899999998     8999999999999999999999997655   999999999999999999954 7788899999


Q ss_pred             CCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceE
Q 031256           76 GHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVK  155 (163)
Q Consensus        76 ~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~  155 (163)
                      +..+++| ...++|.++|+|+||+.++++++|||||+++++++||++|+|||+|++|||||++|+++++ ++++|.++|+
T Consensus        99 g~~~~de-~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~-~~g~P~~~v~  176 (184)
T 3rdd_A           99 GEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKIT  176 (184)
T ss_dssp             BSCBCCC-CCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCSSCEE
T ss_pred             CCcccCc-ccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCC-CCCCCcCCeE
Confidence            9999998 4689999999999999999999999999999999999999999999999999999999986 5789999999


Q ss_pred             EEEEEEcC
Q 031256          156 ILRTSVKD  163 (163)
Q Consensus       156 I~~~~vl~  163 (163)
                      |.+|++|+
T Consensus       177 I~~cG~l~  184 (184)
T 3rdd_A          177 IADCGQLE  184 (184)
T ss_dssp             EEEEEECC
T ss_pred             EEeCeEEC
Confidence            99999986

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=9.5e-53  Score=315.18  Aligned_cols=157  Identities=48%  Similarity=0.834  Sum_probs=147.4

Q ss_pred             CCCCCEEEEEe-----cceEEEEEEcCCCChHHHHHHHHHHh--cCC-cCCceEEEeecCceeecCC-CCCCCCCCCCCC
Q 031256            5 DDGPPEVTLET-----SMGSFTVELYYKHSPRTCRNFAELSR--RGY-YNNSKFHRIIKDFIVQGGD-PTGTGRGGDSIY   75 (163)
Q Consensus         5 ~~~~~~v~~~t-----s~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~-~~~~~~~~~~~~   75 (163)
                      +..+++|+|++     +.|+|+||||++.||+||+||++||+  .+| |+|+.||||+|+|++|||| +.+++.++.++|
T Consensus        12 p~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~   91 (188)
T 3ich_A           12 PKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIY   91 (188)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             CCcCCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCcccc
Confidence            44467888985     58999999999999999999999995  689 9999999999999999999 567888999999


Q ss_pred             CCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceE
Q 031256           76 GHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVK  155 (163)
Q Consensus        76 ~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~  155 (163)
                      +..+++| +..++|.++|+||||+.++++++|||||++.++++||++|+|||+|++||+||++|++.+++.+++|.++|+
T Consensus        92 g~~f~dE-~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~  170 (188)
T 3ich_A           92 GERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVI  170 (188)
T ss_dssp             BSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEE
T ss_pred             CCccccc-ccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEE
Confidence            9999999 678999999999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             EEEEEEc
Q 031256          156 ILRTSVK  162 (163)
Q Consensus       156 I~~~~vl  162 (163)
                      |.+|+++
T Consensus       171 I~~~~~l  177 (188)
T 3ich_A          171 IADCGKI  177 (188)
T ss_dssp             EEEEEEE
T ss_pred             EEEeEEE
Confidence            9999987

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=7.8e-53  Score=315.40  Aligned_cols=157  Identities=48%  Similarity=0.810  Sum_probs=149.1

Q ss_pred             CCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhc--C-CcCCceEEEeecCceeecCCCC-CCCCCCCCCC
Q 031256            5 DDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRR--G-YYNNSKFHRIIKDFIVQGGDPT-GTGRGGDSIY   75 (163)
Q Consensus         5 ~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~--~-~y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~   75 (163)
                      ++.+++|+|+++     .|+|+||||++.||+||+||++||++  + +|+|+.|||++|+|++||||+. +++.++.++|
T Consensus         9 p~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~   88 (185)
T 4fru_A            9 PKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIY   88 (185)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             CCcCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCcccc
Confidence            567899999998     89999999999999999999999976  5 7999999999999999999987 7788899999


Q ss_pred             CCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceE
Q 031256           76 GHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVK  155 (163)
Q Consensus        76 ~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~  155 (163)
                      +..+++| ...++|.++|+||||+.++++++|||||+++++++||++|+|||||++||+||++|++++++.+++|.++|+
T Consensus        89 g~~f~de-~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~  167 (185)
T 4fru_A           89 GERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVT  167 (185)
T ss_dssp             BSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEE
T ss_pred             CCccCcc-ccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEE
Confidence            9999999 568999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEc
Q 031256          156 ILRTSVK  162 (163)
Q Consensus       156 I~~~~vl  162 (163)
                      |.+|+++
T Consensus       168 I~~~g~l  174 (185)
T 4fru_A          168 IADCGKI  174 (185)
T ss_dssp             EEEEEEE
T ss_pred             EEEceEE
Confidence            9999987

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=3.9e-52  Score=311.20  Aligned_cols=156  Identities=48%  Similarity=0.796  Sum_probs=144.0

Q ss_pred             CCCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHh--cCC--------cCCceEEEeecCceeecCCCC-CC
Q 031256            4 SDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSR--RGY--------YNNSKFHRIIKDFIVQGGDPT-GT   67 (163)
Q Consensus         4 ~~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~--~~~--------y~g~~f~rv~~~~~iq~G~~~-~~   67 (163)
                      ....+++|+|+++     .|+|+||||+++||++|+||++||+  .+|        |+|+.||||+|+|++||||+. ++
T Consensus        15 ~~~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~   94 (186)
T 2poy_A           15 YFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGD   94 (186)
T ss_dssp             ---CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSS
T ss_pred             ccCCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCC
Confidence            4567899999987     8999999999999999999999996  578        999999999999999999986 77


Q ss_pred             CCCCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC
Q 031256           68 GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKD  147 (163)
Q Consensus        68 ~~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~  147 (163)
                      +.++.++|+..|++| ...++|.++|+||||+.+|++++|||||++.++++||++|+|||+|++|||||++|++.++ .+
T Consensus        95 G~gg~si~g~~f~dE-~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t-~~  172 (186)
T 2poy_A           95 GTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QN  172 (186)
T ss_dssp             SSCCCCTTC-CBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TT
T ss_pred             CCCCCccCCCcccCc-ccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCC-CC
Confidence            888999999999999 4689999999999999999999999999999999999999999999999999999999998 67


Q ss_pred             CCcccceEEEEEEE
Q 031256          148 DRPIHDVKILRTSV  161 (163)
Q Consensus       148 ~~p~~~i~I~~~~v  161 (163)
                      ++|.++|+|.+|++
T Consensus       173 ~~P~~~v~I~~cG~  186 (186)
T 2poy_A          173 GKPTKSVCITASGV  186 (186)
T ss_dssp             SCCSSCEEEEEEEC
T ss_pred             CCCCCCEEEEeCCC
Confidence            89999999999984

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.1e-51  Score=310.50  Aligned_cols=158  Identities=43%  Similarity=0.721  Sum_probs=146.0

Q ss_pred             CCCCCCEEEEE-----ecceEEEEEEcCCCChHHHHHHHHHHh--cCC-cCCceEEEeecCceeecCCC-CCCCCCCCCC
Q 031256            4 SDDGPPEVTLE-----TSMGSFTVELYYKHSPRTCRNFAELSR--RGY-YNNSKFHRIIKDFIVQGGDP-TGTGRGGDSI   74 (163)
Q Consensus         4 ~~~~~~~v~~~-----ts~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~~-~~~~~~~~~~   74 (163)
                      +...+++|+|+     |+.|+|+||||+++||++|+||++||+  .+| |+|+.||||+|+|++||||+ .+++.++.++
T Consensus        23 ~~~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si  102 (193)
T 3k2c_A           23 AKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSI  102 (193)
T ss_dssp             C--CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCT
T ss_pred             cccCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCccc
Confidence            44567899999     558999999999999999999999998  667 99999999999999999995 4778889999


Q ss_pred             CCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcc--c
Q 031256           75 YGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPI--H  152 (163)
Q Consensus        75 ~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~--~  152 (163)
                      |+..+++| .+.++|.++|+|+||+.++++++|||||+++++++||++|+|||+|++|||||++|++.+++ +++|.  +
T Consensus       103 ~g~~f~dE-~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~P~~~~  180 (193)
T 3k2c_A          103 YGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQVKKGY  180 (193)
T ss_dssp             TSSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCCTTC
T ss_pred             CCCccccc-ccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCcCccCc
Confidence            99999999 67899999999999999999999999999999999999999999999999999999999986 67999  9


Q ss_pred             ceEEEEEEEcC
Q 031256          153 DVKILRTSVKD  163 (163)
Q Consensus       153 ~i~I~~~~vl~  163 (163)
                      +|+|.+|++|+
T Consensus       181 ~v~I~~cG~l~  191 (193)
T 3k2c_A          181 RIEIRDCGVLG  191 (193)
T ss_dssp             CEEEEEEEECC
T ss_pred             cEEEEEceEeC
Confidence            99999999985

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=2.9e-52  Score=321.15  Aligned_cols=161  Identities=44%  Similarity=0.751  Sum_probs=150.3

Q ss_pred             CCCCCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCC--CCcC
Q 031256            2 LASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIY--GHVF   79 (163)
Q Consensus         2 ~~~~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~--~~~~   79 (163)
                      ..+++.+..|.|+|+.|+|+||||++.||++|+||++||+.+||+|+.||||+|+|++||||+.+++.++.++|  +..|
T Consensus        15 ~~~p~~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQgGdp~~~G~Gg~si~~~g~~f   94 (232)
T 3bkp_A           15 YFQGSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPF   94 (232)
T ss_dssp             GCCCSCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEECCTTSSSSCCCCCTTTTCCB
T ss_pred             cccCCCCCEEEEEECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEcCCCCCCCCCCCccccCCCcc
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999  8899


Q ss_pred             CCCCCCCCCCCcceEEEeeeCCC--------------CCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHH--HHHHhcCC
Q 031256           80 EDEIKPELKHTGAGILSMANAGP--------------NTNGSQFFITLAPASHLDGKHTIFGRVCRGMEV--IKRLGSVQ  143 (163)
Q Consensus        80 ~~e~~~~l~~~~~G~v~~~~~~~--------------~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~v--l~~I~~~~  143 (163)
                      ++|..+.++|..+|+||||+.++              ++++|||||+++++++||++|+|||+|+ ||++  |++|++++
T Consensus        95 ~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~  173 (232)
T 3bkp_A           95 DVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLE  173 (232)
T ss_dssp             CCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSC
T ss_pred             CCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHHHHHHcCC
Confidence            99987889999999999999987              6999999999999999999999999999 7765  89999999


Q ss_pred             CCCCCCcccceEEEEEEEcC
Q 031256          144 TDKDDRPIHDVKILRTSVKD  163 (163)
Q Consensus       144 ~~~~~~p~~~i~I~~~~vl~  163 (163)
                      ++.+++|.++|+|.+|+|++
T Consensus       174 t~~~~~P~~~i~I~~~~vl~  193 (232)
T 3bkp_A          174 VGKEDRPMTPPFIKSVDVLW  193 (232)
T ss_dssp             BCGGGCBSSCCBEEEEEEEE
T ss_pred             cCCCCCcCCCeEEEEEEEEc
Confidence            99899999999999999873

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=3.4e-52  Score=307.18  Aligned_cols=156  Identities=33%  Similarity=0.585  Sum_probs=141.7

Q ss_pred             CCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCC
Q 031256            5 DDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIK   84 (163)
Q Consensus         5 ~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~   84 (163)
                      ++.+++|.|+|+.|+|+||||+++||+||+||++||+.+||+|+.||||+|+|++||||+...+.  .+.++..+++|..
T Consensus         1 ~~~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~--~~~~g~~~~dE~~   78 (166)
T 1v9t_A            1 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKKPNPPIKNEAD   78 (166)
T ss_dssp             CCCSCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTCC--BCCCCCCBCCCGG
T ss_pred             CCCCeEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEcCCcCcCCC--CCCCCCccccccc
Confidence            35788999999999999999999999999999999999999999999999999999999985432  2345778899976


Q ss_pred             CCCCCCcceEEEeeeC-CCCCCcccEEEEcCCCCCCCCC-----CcEEEEEEcCHHHHHHHhcCCCCC----CCCcccce
Q 031256           85 PELKHTGAGILSMANA-GPNTNGSQFFITLAPASHLDGK-----HTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDV  154 (163)
Q Consensus        85 ~~l~~~~~G~v~~~~~-~~~~~~sqFfI~l~~~~~ld~~-----~~vfG~Vi~G~~vl~~I~~~~~~~----~~~p~~~i  154 (163)
                      +.++|. +|+||||+. +|++++|||||++.++++||++     |+|||+|++|||||++|++.++++    .++|.++|
T Consensus        79 ~~l~~~-~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P~~~v  157 (166)
T 1v9t_A           79 NGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPV  157 (166)
T ss_dssp             GSCCCC-TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCC
T ss_pred             ccccCC-ceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCcCCCe
Confidence            677766 999999996 6999999999999999999998     999999999999999999999876    47899999


Q ss_pred             EEEEEEEcC
Q 031256          155 KILRTSVKD  163 (163)
Q Consensus       155 ~I~~~~vl~  163 (163)
                      +|.+|+|++
T Consensus       158 ~I~~~~v~~  166 (166)
T 1v9t_A          158 VILSATVLP  166 (166)
T ss_dssp             BEEEEEECC
T ss_pred             EEEEEEEeC
Confidence            999999985

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=5.3e-52  Score=318.55  Aligned_cols=158  Identities=38%  Similarity=0.702  Sum_probs=149.0

Q ss_pred             CCCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcC--------CcCCceEEEeecCceeecCCCC-CCCC
Q 031256            4 SDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRG--------YYNNSKFHRIIKDFIVQGGDPT-GTGR   69 (163)
Q Consensus         4 ~~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~--------~y~g~~f~rv~~~~~iq~G~~~-~~~~   69 (163)
                      ..+.+++|+|+++     .|+|+||||++.||+||+||++||+++        ||+|+.||||+|+|+|||||+. +++.
T Consensus        55 ~~~~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~  134 (229)
T 1z81_A           55 TNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGS  134 (229)
T ss_dssp             SSTTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSC
T ss_pred             cCCCCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCCCCC
Confidence            3456889999987     899999999999999999999999987        7999999999999999999986 7888


Q ss_pred             CCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEE--cCHHHHHHHhcCCCCCC
Q 031256           70 GGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC--RGMEVIKRLGSVQTDKD  147 (163)
Q Consensus        70 ~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi--~G~~vl~~I~~~~~~~~  147 (163)
                      ++.++|+..|++| .+.++|.++|+||||+.+|++++|||||++.++++||++|+|||||+  +||+||++|++.+++++
T Consensus       135 Gg~siyg~~f~dE-~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~  213 (229)
T 1z81_A          135 GSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPY  213 (229)
T ss_dssp             CCCBTTBSCCCCC-CCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTT
T ss_pred             CCCccCCCccccc-ccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCC
Confidence            8999999999999 47899999999999999999999999999999999999999999999  99999999999999887


Q ss_pred             -CCcccceEEEEEEEc
Q 031256          148 -DRPIHDVKILRTSVK  162 (163)
Q Consensus       148 -~~p~~~i~I~~~~vl  162 (163)
                       ++|.++|+|.+|++|
T Consensus       214 ~~~P~~~V~I~~cG~l  229 (229)
T 1z81_A          214 IYKPKIPINVVECGEL  229 (229)
T ss_dssp             TCCBSSCEEEEEEEEC
T ss_pred             CCCCCCCeEEEeCeeC
Confidence             999999999999986

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=7.1e-52  Score=305.86  Aligned_cols=153  Identities=28%  Similarity=0.485  Sum_probs=140.8

Q ss_pred             CCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCC
Q 031256            7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPE   86 (163)
Q Consensus         7 ~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~   86 (163)
                      +.+.|.|+|+.|+|+||||+++||+||+||++||+.+||+|+.||||+|+|++||||+....  +.+.++..+++|..+.
T Consensus         2 p~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~--~~~~~~~~~~~E~~~~   79 (167)
T 3s6m_A            2 PGSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGL--KQKPTDAPIANEANNG   79 (167)
T ss_dssp             CCCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEESSEETTT--EECCCCCCBCCCGGGC
T ss_pred             CCcEEEEEeCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEeccccCCC--CCCCCCCccCCccccc
Confidence            56799999999999999999999999999999999999999999999999999999987543  2344577888887778


Q ss_pred             CCCCcceEEEeee-CCCCCCcccEEEEcCCCCCCCCC--------CcEEEEEEcCHHHHHHHhcCCCCC----CCCcccc
Q 031256           87 LKHTGAGILSMAN-AGPNTNGSQFFITLAPASHLDGK--------HTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHD  153 (163)
Q Consensus        87 l~~~~~G~v~~~~-~~~~~~~sqFfI~l~~~~~ld~~--------~~vfG~Vi~G~~vl~~I~~~~~~~----~~~p~~~  153 (163)
                      ++|. +|+||||+ .+|++++|||||++.++++||++        |+|||+|++|||||++|+++++++    +++|.++
T Consensus        80 l~~~-~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~  158 (167)
T 3s6m_A           80 LKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDD  158 (167)
T ss_dssp             CCCC-TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSC
T ss_pred             ccCC-ccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCC
Confidence            8885 99999999 68999999999999999999998        999999999999999999999987    6899999


Q ss_pred             eEEEEEEEc
Q 031256          154 VKILRTSVK  162 (163)
Q Consensus       154 i~I~~~~vl  162 (163)
                      |+|.+|.||
T Consensus       159 v~I~~~~il  167 (167)
T 3s6m_A          159 VVIEKAVVV  167 (167)
T ss_dssp             CEEEEEEEC
T ss_pred             eEEEEEEEC
Confidence            999999986

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=4.7e-52  Score=305.88  Aligned_cols=151  Identities=31%  Similarity=0.559  Sum_probs=139.6

Q ss_pred             EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 031256           10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKH   89 (163)
Q Consensus        10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~   89 (163)
                      +|.|+|+.|+|+||||+++||+||+||++||+.+||+|+.||||+|+|++||||+...  .+.++++..+++|..+.++|
T Consensus         1 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~--~g~~~~g~~~~dE~~~~l~~   78 (164)
T 1lop_A            1 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG--MKQKATKEPIKNEANNGLKN   78 (164)
T ss_dssp             CEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEETT--TEECCCCCCBCCCCCSSCCC
T ss_pred             CEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEecCCcccC--CCcCCCCCcccccccccccc
Confidence            4899999999999999999999999999999999999999999999999999998732  24567888999998777888


Q ss_pred             CcceEEEeee-CCCCCCcccEEEEcCCCCCCCCC--------CcEEEEEEcCHHHHHHHhcCCCCC----CCCcccceEE
Q 031256           90 TGAGILSMAN-AGPNTNGSQFFITLAPASHLDGK--------HTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKI  156 (163)
Q Consensus        90 ~~~G~v~~~~-~~~~~~~sqFfI~l~~~~~ld~~--------~~vfG~Vi~G~~vl~~I~~~~~~~----~~~p~~~i~I  156 (163)
                      . +|+||||+ .+|++++|||||++.++++||++        |+|||+|++|||||++|++.+++.    +++|.++|+|
T Consensus        79 ~-~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I  157 (164)
T 1lop_A           79 T-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII  157 (164)
T ss_dssp             C-TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEE
T ss_pred             C-ccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCeEE
Confidence            6 99999997 58999999999999999999998        999999999999999999999865    5899999999


Q ss_pred             EEEEEcC
Q 031256          157 LRTSVKD  163 (163)
Q Consensus       157 ~~~~vl~  163 (163)
                      .+|+|++
T Consensus       158 ~~~~v~~  164 (164)
T 1lop_A          158 ESVTVSE  164 (164)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            9999986

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=5.3e-51  Score=314.68  Aligned_cols=158  Identities=23%  Similarity=0.431  Sum_probs=142.6

Q ss_pred             CCCCCCCEEEEE-----ecceEEEEEEcCCCChHHHHHHHHHHhc-----------------C--C-cCCceEEEeecCc
Q 031256            3 ASDDGPPEVTLE-----TSMGSFTVELYYKHSPRTCRNFAELSRR-----------------G--Y-YNNSKFHRIIKDF   57 (163)
Q Consensus         3 ~~~~~~~~v~~~-----ts~G~i~ieL~~~~aP~~~~nF~~l~~~-----------------~--~-y~g~~f~rv~~~~   57 (163)
                      ..+..+++|+|+     |+.|+|+||||++.||+||+||++||++                 +  | |+|+.||||+|+|
T Consensus         9 p~~~~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~F   88 (234)
T 2ose_A            9 PNSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNN   88 (234)
T ss_dssp             CCCCSSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTT
T ss_pred             CcCCCCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCC
Confidence            445678899999     8999999999999999999999999984                 4  7 9999999999999


Q ss_pred             eeecCC-CCCCCCCCCCCCCCc-----CCCCCCCCCCCCcceEEEeee----CCCCCCcccEEEEcCC------CCCCCC
Q 031256           58 IVQGGD-PTGTGRGGDSIYGHV-----FEDEIKPELKHTGAGILSMAN----AGPNTNGSQFFITLAP------ASHLDG  121 (163)
Q Consensus        58 ~iq~G~-~~~~~~~~~~~~~~~-----~~~e~~~~l~~~~~G~v~~~~----~~~~~~~sqFfI~l~~------~~~ld~  121 (163)
                      +||||| +.+++.++.++|+..     |+   ++.++|.++|+||||+    .++++++|||||++.+      .+|||+
T Consensus        89 miQgGd~~~g~G~Gg~siyg~~~~p~~f~---~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg  165 (234)
T 2ose_A           89 YIVSGDIYNSNGSSAGTVYCDEPIPPVFG---DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDR  165 (234)
T ss_dssp             EEEECCCC----CCCCCTTTTCCBCCCCC---SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCT
T ss_pred             EEEcCCccCCCCCCCccccCCccCccccc---CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCC
Confidence            999999 468888999999887     55   3579998899999999    9999999999999999      999999


Q ss_pred             CCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEEcC
Q 031256          122 KHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSVKD  163 (163)
Q Consensus       122 ~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~vl~  163 (163)
                      +|+|||+|++|||||++|++++++.+++|.++|+|.+|++++
T Consensus       166 ~~tVFG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~  207 (234)
T 2ose_A          166 DQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYL  207 (234)
T ss_dssp             TSEEEEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECC
T ss_pred             CeeEEEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEec
Confidence            999999999999999999999999889999999999999974

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=8.3e-52  Score=306.38  Aligned_cols=147  Identities=48%  Similarity=0.797  Sum_probs=111.3

Q ss_pred             ecceEEEEEEcCCCChHHHHHHHHHHh--cCC-cCCceEEEeecCceeecCC-CCCCCCCCCCCCCCcCCCCCCCCCCCC
Q 031256           15 TSMGSFTVELYYKHSPRTCRNFAELSR--RGY-YNNSKFHRIIKDFIVQGGD-PTGTGRGGDSIYGHVFEDEIKPELKHT   90 (163)
Q Consensus        15 ts~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~-~~~~~~~~~~~~~~~~~~e~~~~l~~~   90 (163)
                      |++|+|+||||++.||++|+||++||+  .++ |+|+.||||+|+|++|||| +.+++.++.++|+..+++| ++.++|.
T Consensus        19 T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~~~h~   97 (172)
T 2c3b_A           19 TKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADE-NFSRKHD   97 (172)
T ss_dssp             CEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC-----------------------CHHHH
T ss_pred             cccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCcccCCCcccCc-ccccccC
Confidence            455999999999999999999999999  678 9999999999999999999 6688888999999999999 6788999


Q ss_pred             cceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEc--CHHHHHHHhcCCCCCCC-CcccceEEEEEEEc
Q 031256           91 GAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCR--GMEVIKRLGSVQTDKDD-RPIHDVKILRTSVK  162 (163)
Q Consensus        91 ~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~--G~~vl~~I~~~~~~~~~-~p~~~i~I~~~~vl  162 (163)
                      ++|+||||+.+|++++|||||++.++++||++|+|||+|++  ||+||++|++.+++..+ +|.++|+|.+|++|
T Consensus        98 ~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A           98 KKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             HTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred             CCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCeEEEeCeeC
Confidence            99999999999999999999999999999999999999999  99999999999987655 99999999999986

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=1.2e-48  Score=319.76  Aligned_cols=153  Identities=46%  Similarity=0.788  Sum_probs=146.4

Q ss_pred             CCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhc--------C---CcCCceEEEeecCceeecCCCC-CCCCC
Q 031256            8 PPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRR--------G---YYNNSKFHRIIKDFIVQGGDPT-GTGRG   70 (163)
Q Consensus         8 ~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~--------~---~y~g~~f~rv~~~~~iq~G~~~-~~~~~   70 (163)
                      +++|+|+|+     .|+|+||||++.||+||+||++||++        |   ||+|+.||||+|+|+|||||+. ++|++
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g   94 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG   94 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence            899999998     89999999999999999999999987        5   7999999999999999999998 88999


Q ss_pred             CCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCc
Q 031256           71 GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRP  150 (163)
Q Consensus        71 ~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p  150 (163)
                      +.++|+..|++| ...++|.++|+|+|++.+|++++|||||++.+.++||++|+|||+|++||+||++|+..+++. ++|
T Consensus        95 ~~~~~~~~~~~e-~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P  172 (370)
T 1ihg_A           95 GESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKP  172 (370)
T ss_dssp             CCBTTBSCBCCC-CCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEE
T ss_pred             CCCCCCCCcCCC-cCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Ccc
Confidence            999999999999 468899999999999999999999999999999999999999999999999999999999876 899


Q ss_pred             ccceEEEEEEEc
Q 031256          151 IHDVKILRTSVK  162 (163)
Q Consensus       151 ~~~i~I~~~~vl  162 (163)
                      ..+|+|.+|+++
T Consensus       173 ~~~v~I~~~g~l  184 (370)
T 1ihg_A          173 AKLCVIAECGEL  184 (370)
T ss_dssp             SSCEEEEEEEEE
T ss_pred             ceeEEEEEEEEe
Confidence            999999999987

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=2.9e-42  Score=279.63  Aligned_cols=136  Identities=27%  Similarity=0.474  Sum_probs=120.7

Q ss_pred             CCCCEEEEEec--------ceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCC-------
Q 031256            6 DGPPEVTLETS--------MGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG-------   70 (163)
Q Consensus         6 ~~~~~v~~~ts--------~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~-------   70 (163)
                      .....|.|+|+        .|+|+|+||++.||+||+||++||+.+||+|+.|||| |+|++||||+.+++.+       
T Consensus       168 ~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQgGDp~g~G~G~~~~~~g  246 (369)
T 3rfy_A          168 KGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTE  246 (369)
T ss_dssp             CSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECCCCCCCCCSCCCSCCCC
T ss_pred             CCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEecCCCCCCCCCccCcccC
Confidence            34677889997        8999999999999999999999999999999999999 9999999999877655       


Q ss_pred             --------------CCCCCCCcCCCCC----CCCCCCCcceEEEeeeC--CCCCCcccEEEEc-------CCCCCCCCCC
Q 031256           71 --------------GDSIYGHVFEDEI----KPELKHTGAGILSMANA--GPNTNGSQFFITL-------APASHLDGKH  123 (163)
Q Consensus        71 --------------~~~~~~~~~~~e~----~~~l~~~~~G~v~~~~~--~~~~~~sqFfI~l-------~~~~~ld~~~  123 (163)
                                    +.++|+..+++|.    .+.++|+.+|+||||++  ++|+++|||||++       .+.++||++|
T Consensus       247 ~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgky  326 (369)
T 3rfy_A          247 KTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRY  326 (369)
T ss_dssp             CCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCE
T ss_pred             cCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCe
Confidence                          3456666666652    35788888999999997  8999999999999       4789999999


Q ss_pred             cEEEEEEcCHHHHHHHhcC
Q 031256          124 TIFGRVCRGMEVIKRLGSV  142 (163)
Q Consensus       124 ~vfG~Vi~G~~vl~~I~~~  142 (163)
                      +|||+|++|||||++|++.
T Consensus       327 tVFG~VveGmdVVdkI~~G  345 (369)
T 3rfy_A          327 AVFGYVTDNEDFLADLKVG  345 (369)
T ss_dssp             EEEEEEEESTTGGGGCCTT
T ss_pred             eEEEEEecCHHHHHHHhCC
Confidence            9999999999999999873

>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}

Probab=96.89  E-value=0.0033  Score=44.88  Aligned_cols=104  Identities=17%  Similarity=0.269  Sum_probs=65.0

Q ss_pred             CCCEEEEEecceEEEEEEcCCCChHHHHHHHHHH--hcC--CcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCC-
Q 031256            7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELS--RRG--YYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFED-   81 (163)
Q Consensus         7 ~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~--~~~--~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~-   81 (163)
                      ...++.|...-..++++|+.+.||+||+.|+++.  +..  -|.+-.++ -.|                     ..++. 
T Consensus        28 ~~~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~LPl~~~~~~~g~E~y~-~lp---------------------~~l~~~   85 (153)
T 2nnz_A           28 VEMRLRIRFESAECEVELYEEWAPETVRAIADALPIKSTANRWGDEIYF-TTQ---------------------VAVEKE   85 (153)
T ss_dssp             SCCCEEEEETTEEEEECCCTTSCHHHHHHHHHTCSEEEEEEEETTEEEE-CCS---------------------CCCCCS
T ss_pred             CCeEEEEEECCEEEEEEEcCCCCHHHHHHHHHhCCcEEEHHhhCCcEEE-ECC---------------------CCCCCC
Confidence            3566888888889999999999999999999986  111  12211111 111                     01111 


Q ss_pred             CCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCC------CCCcEEEEEEcCHHHHHHH
Q 031256           82 EIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD------GKHTIFGRVCRGMEVIKRL  139 (163)
Q Consensus        82 e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld------~~~~vfG~Vi~G~~vl~~I  139 (163)
                      | +.. .....|-|++-..+.+     +.|-.++.|...      ..-.+||+|.+|++.|.++
T Consensus        86 e-n~~-~~~~~GDI~Yy~pg~~-----LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~  142 (153)
T 2nnz_A           86 E-NSK-DVVELGDVAYWIPGKA-----ICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGV  142 (153)
T ss_dssp             S-CCB-CCCCTTEEEEETTTTE-----EEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred             C-CCc-ccCCCCeEEEeCCCCE-----EEEEECCccccccccccccccEEEEEEccCHHHHhhC
Confidence            2 122 2334788888765543     777777764322      2246899999998777665

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=95.58  E-value=0.25  Score=35.91  Aligned_cols=111  Identities=11%  Similarity=0.140  Sum_probs=64.0

Q ss_pred             CEEEEEecce--EEEEEEcCCCChHHHHHHHHHH--hcC----CcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCC
Q 031256            9 PEVTLETSMG--SFTVELYYKHSPRTCRNFAELS--RRG----YYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFE   80 (163)
Q Consensus         9 ~~v~~~ts~G--~i~ieL~~~~aP~~~~nF~~l~--~~~----~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~   80 (163)
                      ..+.++...+  .++.+|..+.||+||+.|.++.  ++.    .|.|..++--.|.+-.                 ...+
T Consensus        22 r~i~itl~~~g~~~~A~Lldd~APkTcaA~~~~LP~~~~viHarwSGeeVy~~lp~f~~-----------------~~~g   84 (188)
T 3kop_A           22 RYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAP-----------------KEPG   84 (188)
T ss_dssp             CEEEEEETTTTEEEEEEECTTTSHHHHHHHHHHCCEEEECEECSSSSSEEEEEEECCSS-----------------SCCC
T ss_pred             eEEEEEEecCCeEEEEEEccccChHHHHHHHHhCCCCcceEEEEEecceEEEECCcccc-----------------cCCC
Confidence            4555665554  4789999999999999999976  221    2566655554454321                 1123


Q ss_pred             CCCCCCCCCCcceEEEee---e---C----C--------CCCCcccEEEEcCCC--------CCCCCCCcEEEEEEcCHH
Q 031256           81 DEIKPELKHTGAGILSMA---N---A----G--------PNTNGSQFFITLAPA--------SHLDGKHTIFGRVCRGME  134 (163)
Q Consensus        81 ~e~~~~l~~~~~G~v~~~---~---~----~--------~~~~~sqFfI~l~~~--------~~ld~~~~vfG~Vi~G~~  134 (163)
                      .|+.  -.+..+|-|++-   .   .    |        ..+...++.|-.+.+        .|+-+  .+|++|++|.|
T Consensus        85 ~EN~--T~~P~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpG--N~F~TIveGle  160 (188)
T 3kop_A           85 AENT--TVTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPG--NVFATIVEGLD  160 (188)
T ss_dssp             SCSE--ESSCCTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCE--EEEEEEEESHH
T ss_pred             cCCC--CCCCCCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecC--cEEEEEecCHH
Confidence            3422  233446777763   1   1    1        011123555554433        34444  46999999999


Q ss_pred             HHHHHh
Q 031256          135 VIKRLG  140 (163)
Q Consensus       135 vl~~I~  140 (163)
                      -+.++.
T Consensus       161 ~la~~c  166 (188)
T 3kop_A          161 EMAAAC  166 (188)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887663

>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A

Probab=94.77  E-value=0.26  Score=34.30  Aligned_cols=100  Identities=13%  Similarity=0.162  Sum_probs=60.3

Q ss_pred             EEEEEecceEEEEEEcCCCChHHHHHHHHHH----hcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCC
Q 031256           10 EVTLETSMGSFTVELYYKHSPRTCRNFAELS----RRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKP   85 (163)
Q Consensus        10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~----~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~   85 (163)
                      +|.+-.....+..+|+.  .|.|++.|.++.    +-..|. ..++--.|-.                     ++.+.++
T Consensus        14 ~~~~~~~~~~v~a~L~D--np~Ta~~~~~~LPl~~~~~~~g-~E~y~~~p~~---------------------l~~~e~~   69 (136)
T 1zx8_A           14 RVELLFESGKCVIDLNE--EYEVVKLLKEKIPFESVVNTWG-EEIYFSTPVN---------------------VQKMENP   69 (136)
T ss_dssp             EEEEECSSCEEEEEEET--TSHHHHHHHHHCSEEEECEESS-SEEEEECSCC---------------------CCCCSSE
T ss_pred             EEEEeeCCcEEEEEEcC--CHHHHHHHHHHCCcEEEHHHhC-CcEEEECCcc---------------------CCCCCCC
Confidence            44555566789999975  488999999986    222243 3333222311                     1111012


Q ss_pred             CCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCC------CCcEEEEEEcCHHHHHHH
Q 031256           86 ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDG------KHTIFGRVCRGMEVIKRL  139 (163)
Q Consensus        86 ~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~------~~~vfG~Vi~G~~vl~~I  139 (163)
                      ... ...|-|++-..+.+     |.|-.++.|...+      .-.+||||.+|++.+.++
T Consensus        70 ~~~-~~~GDIaYw~pgg~-----LaIFyg~~p~s~~e~~~a~~v~~lGrI~~~l~~l~~v  123 (136)
T 1zx8_A           70 REV-VEIGDVGYWPPGKA-----LCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKI  123 (136)
T ss_dssp             ESS-BCTTEEEEEGGGTE-----EEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGC
T ss_pred             Ccc-CCCCcEEEeCCCCE-----EEEEeCCCccccCccccCcCcEEEEEEccCHHHHhhC
Confidence            222 24788888776555     7777777653332      367899999997777655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	1e-57
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	5e-54
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	6e-49
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	9e-48
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	6e-44
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	1e-41
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	2e-41
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-40
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	6e-38
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	6e-38
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-37
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	4e-37
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	4e-37
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	4e-36
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	4e-35
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	1e-34
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	3e-34
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	2e-33
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	3e-33
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	8e-32
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	2e-31
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	3e-30

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  175 bits (445), Expect = 1e-57
 Identities = 107/151 (70%), Positives = 131/151 (86%)

Query: 8   PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGT 67
           PP V LETSMG   +ELY+KH+P+TC+NFAEL+RRGYYN +KFHRIIKDF++QGGDPTGT
Sbjct: 11  PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70

Query: 68  GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
           GRGG SIYG  FEDE+ P+LK TGAGIL+MANAGP+TNGSQFF+TLAP   LDGKHTIFG
Sbjct: 71  GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130

Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILR 158
           RVC+G+ ++ R+G V+T+  DRP+ DVKI++
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKIIK 161

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (422), Expect = 5e-54
 Identities = 78/152 (51%), Positives = 109/152 (71%), Gaps = 1/152 (0%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
           V L T+ G   +EL+   +P+TC NF  L ++ YY+ + FHR I++F++QGGDPTGTG G
Sbjct: 3   VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTG 62

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G+S +G  F+DE +P L HTG GILSMAN+GPN+N SQFFIT    ++LD KHTIFGRV 
Sbjct: 63  GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVV 122

Query: 131 RGMEVIKRLGSVQTD-KDDRPIHDVKILRTSV 161
            G +V+  + +V++D K DRP  +++I  T+V
Sbjct: 123 GGFDVLTAMENVESDPKTDRPKEEIRIDATTV 154

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (387), Expect = 6e-49
 Identities = 77/154 (50%), Positives = 100/154 (64%), Gaps = 1/154 (0%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
           VTL T +G   +E++ + +P+TC NF  L    YYN   FHR IK F+VQ GDPTGTGRG
Sbjct: 3   VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G+SI+G  FEDE    LKH   G++SMAN GPNTNGSQFFIT     HLD K+T+FG+V 
Sbjct: 63  GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI 122

Query: 131 RGMEVIKRLGSVQTD-KDDRPIHDVKILRTSVKD 163
            G+E +  L  +  + K  RP++DV I   ++  
Sbjct: 123 DGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA 156

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  150 bits (380), Expect = 9e-48
 Identities = 97/150 (64%), Positives = 118/150 (78%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
           +T+ T++G F VELY+ HSP+TC NF  L   G+Y+N+ FHR+I +F++QGGDPTGTG+G
Sbjct: 19  ITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG 78

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G SIYG  FEDEI  ELKHTGAGILSM+N GPNTN SQFFITLAP  HLDGKHTIF RV 
Sbjct: 79  GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVS 138

Query: 131 RGMEVIKRLGSVQTDKDDRPIHDVKILRTS 160
           + M  I+ + SVQT   ++PI D+KILRTS
Sbjct: 139 KNMTCIENIASVQTTATNKPIFDLKILRTS 168

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  140 bits (353), Expect = 6e-44
 Identities = 76/154 (49%), Positives = 104/154 (67%)

Query: 8   PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGT 67
           P    + T+MG   + L+YK   +T +NF+  S  GYYNN  FHR+IK F+VQ GDP+G 
Sbjct: 1   PKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGD 60

Query: 68  GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFG 127
           G GG+SI+G+ FEDE    L H+   ++SMAN GPNTNGSQFFIT  P   LD KHT+FG
Sbjct: 61  GTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFG 120

Query: 128 RVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
           +V +G +++  +  V+TDK D+P+ D+KIL   +
Sbjct: 121 KVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI 154

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  134 bits (339), Expect = 1e-41
 Identities = 69/151 (45%), Positives = 88/151 (58%), Gaps = 6/151 (3%)

Query: 15  TSMGSFTVELYYKHSPRTCRNFAELS---RRGYYNNSKFHRIIKDFIVQGGDPT-GTGRG 70
             +G+   +L+    P+T  NF  L    +   Y  S FHR+I DF++QGGD T G G G
Sbjct: 13  APLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTG 72

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G SIYG  F DE   +LKH   G+LSMANAGPNTNGSQFFIT    S LDGKH +FG V 
Sbjct: 73  GKSIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVI 131

Query: 131 RGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
            GM V+K +   +     +P   ++I +  V
Sbjct: 132 DGMNVVKAI-EAEGSGSGKPRSRIEIAKCGV 161

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 2e-41
 Identities = 82/153 (53%), Positives = 103/153 (67%), Gaps = 1/153 (0%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
             + TSMG    +L+    P+T  NF   SR GYYN   FHRIIK F++Q GDPTGTG G
Sbjct: 12  AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMG 71

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G+SI+G  FEDE    L+H     LSMANAG NTNGSQFFIT+ P   LD KHT+FGRV 
Sbjct: 72  GESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVT 131

Query: 131 RGMEVIKRLGSVQTD-KDDRPIHDVKILRTSVK 162
           +GMEV++R+ +V+ + K D+P  DV I+  +VK
Sbjct: 132 KGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 164

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  131 bits (331), Expect = 2e-40
 Identities = 67/168 (39%), Positives = 93/168 (55%), Gaps = 20/168 (11%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRG---------------YYNNSKFHRIIK 55
            TL T+ G   + L+  H+P+T  NF  L++                 +Y+ + FHR+I+
Sbjct: 6   ATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQ 65

Query: 56  DFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAP 115
            F++QGGDPTGTGRGG       F DE  PEL+     +L+MANAGP TNGSQFFIT+  
Sbjct: 66  GFMIQGGDPTGTGRGGPGYK---FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGK 122

Query: 116 ASHLDGKHTIFGRVCR--GMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
             HL+ +HTIFG V       V++ +    TD +DRP   V I   ++
Sbjct: 123 TPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 170

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  125 bits (315), Expect = 6e-38
 Identities = 69/152 (45%), Positives = 84/152 (55%), Gaps = 12/152 (7%)

Query: 15  TSMGSFTVELYYKHSPRTCRNFAEL---------SRRGYYNNSKFHRIIKDFIVQGGDP- 64
           ++ G    EL+   +PRTC NF  L          +  +Y NS FHRII  F+ QGGD  
Sbjct: 15  SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74

Query: 65  TGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
            G G GG+SIYG  F D     +KH   G+LSMANAGPNTN SQFFITL P   LDGKH 
Sbjct: 75  NGNGSGGESIYGRSFTD-ENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHV 133

Query: 125 IFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           +FG+V  GM V++ +      K       V I
Sbjct: 134 VFGKVIEGMNVVREMEKEGA-KSGYVKRSVVI 164

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  125 bits (315), Expect = 6e-38
 Identities = 69/155 (44%), Positives = 94/155 (60%), Gaps = 13/155 (8%)

Query: 15  TSMGSFTVELYYKHSPRTCRNFAEL-----------SRRGYYNNSKFHRIIKDFIVQGGD 63
              G   +ELY   +PRTC NF  L            +  +Y  S FHR+IK+F++QGGD
Sbjct: 15  NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGD 74

Query: 64  PT-GTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGK 122
            T G G GG+SIYG    D+ +  +KH    ++SMAN GPNTNGSQFFIT  PA HL+  
Sbjct: 75  FTKGDGTGGESIYGG-MFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNI 133

Query: 123 HTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL 157
           H +FG+V  G EV+ ++  ++T+  +RP+ DV IL
Sbjct: 134 HVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVIL 168

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (311), Expect = 2e-37
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 14/165 (8%)

Query: 11  VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRG 70
           VT  T+ G   ++ +   +P T +NF +  R G+YNN+ FHR+I  F++QGG      + 
Sbjct: 2   VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAP--------ASHLDGK 122
                    ++E    LK+T   +       P++  +QFFI +           S     
Sbjct: 62  KA--TKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWG 119

Query: 123 HTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSVKD 163
           + +F  V  GM+ + ++  V T +     D P  DV I   +V +
Sbjct: 120 YCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE 164

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  123 bits (310), Expect = 4e-37
 Identities = 70/153 (45%), Positives = 90/153 (58%), Gaps = 13/153 (8%)

Query: 15  TSMGSFTVELYYKHSPRTCRNFAEL----------SRRGYYNNSKFHRIIKDFIVQGGDP 64
            + G   +ELY    P+T  NF  L           +  ++  SKFHRII +F++QGGD 
Sbjct: 15  KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDF 74

Query: 65  -TGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKH 123
             G G GG+SIYG  F DE   E KHTG G+LSMANAGPNTNGSQFF+       LDGKH
Sbjct: 75  TRGNGTGGESIYGEKFPDENFKE-KHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKH 133

Query: 124 TIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
            +FGRV  G++V+K + S    +  +P+ D  I
Sbjct: 134 VVFGRVVEGLDVVKAVESN-GSQSGKPVKDCMI 165

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  123 bits (310), Expect = 4e-37
 Identities = 73/155 (47%), Positives = 88/155 (56%), Gaps = 8/155 (5%)

Query: 9   PEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQGGDP- 64
           P  T ET +G     L+ K  P+T +NF EL +R     Y  S FHRII +F++QGGD  
Sbjct: 12  PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFT 71

Query: 65  TGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHT 124
            G G GG SIYG  F D      KH   GILSMANAGPNTNGSQFFIT A  S LDGKH 
Sbjct: 72  RGNGTGGRSIYGDKFAD-ENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHV 130

Query: 125 IFGRV--CRGMEVIKRLGSVQTD-KDDRPIHDVKI 156
           +FG V   +   V+K + ++ +     R     KI
Sbjct: 131 VFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKI 165

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  121 bits (303), Expect = 4e-36
 Identities = 70/146 (47%), Positives = 92/146 (63%), Gaps = 5/146 (3%)

Query: 15  TSMGSFTVELYYKHSPRTCRNFAELSRR---GYYNNSKFHRIIKDFIVQGGDPT-GTGRG 70
             +G   + L+ K  P+T  NF EL+++     Y  SKFHR+I DF++QGGD T G G G
Sbjct: 18  KPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTG 77

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G SIYG  F D    +LKH GAG LSMANAG +TNGSQFFIT      LDG+H +FG++ 
Sbjct: 78  GRSIYGEKFAD-ENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKIL 136

Query: 131 RGMEVIKRLGSVQTDKDDRPIHDVKI 156
            GM+V++++   +    DRP  DV I
Sbjct: 137 EGMDVVRKIEQTEKLPGDRPKQDVII 162

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  118 bits (297), Expect = 4e-35
 Identities = 70/151 (46%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 15  TSMGSFTVELYYKHSPRTCRNF---AELSRRGYYNNSKFHRIIKDFIVQGGDPT-GTGRG 70
             +G   + L+    P+T  NF   A   +   Y  S FHR+IKDF++QGGD T   G G
Sbjct: 19  KDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTG 78

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G SIYG  F D    +LKH G G +SMANAGP+TNGSQFFITL   + LDGKH +FG+V 
Sbjct: 79  GMSIYGETFPD-ENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVL 137

Query: 131 RGMEVIKRLGSVQTDKDDRPIHDVKILRTSV 161
            GM V+  +    TD  DRP+ D  I+ +  
Sbjct: 138 DGMTVVHSIELQATDGHDRPLTDCTIVNSGK 168

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  116 bits (292), Expect = 1e-34
 Identities = 64/146 (43%), Positives = 90/146 (61%), Gaps = 6/146 (4%)

Query: 15  TSMGSFTVELYYKHSPRTCRNFAELS---RRGYYNNSKFHRIIKDFIVQGGDPT-GTGRG 70
             +G   + L+    P+T  NF +L+       Y  S FHR+I++F++QGGD T   G G
Sbjct: 17  EPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTG 76

Query: 71  GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC 130
           G SIYG  F+DE          G +SMANAGPN+NGSQFF+T AP   LDG+H +FG+V 
Sbjct: 77  GKSIYGTRFDDENLK--IKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVV 134

Query: 131 RGMEVIKRLGSVQTDKDDRPIHDVKI 156
            GM+V+K++ + +T  +D+P   VKI
Sbjct: 135 EGMDVVKKVENTKTGLNDKPKKAVKI 160

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  116 bits (292), Expect = 3e-34
 Identities = 71/171 (41%), Positives = 91/171 (53%), Gaps = 19/171 (11%)

Query: 3   ASDDGPPEVTLETSM-----GSFTVELYYKHSPRTCRNFAELS-----------RRGYYN 46
            S+   P V  +  +     G   +EL+    P+T  NF  L            +  ++ 
Sbjct: 9   PSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFK 68

Query: 47  NSKFHRIIKDFIVQGGD-PTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTN 105
              FHRIIK F++QGGD     G GG+SIYG  FEDE     KH   G+LSMANAG NTN
Sbjct: 69  GCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDEN-FHYKHDKEGLLSMANAGSNTN 127

Query: 106 GSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           GSQFFIT  P  HLDGKH +FG+V +GM V K L +V+    ++P     I
Sbjct: 128 GSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVK-GEKPAKLCVI 177

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 2e-33
 Identities = 68/159 (42%), Positives = 82/159 (51%), Gaps = 11/159 (6%)

Query: 7   GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFI 58
           G P V L+       +G   +EL     P+T  NF  L        Y  S FHR+I  F+
Sbjct: 1   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 60

Query: 59  VQGGD-PTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPAS 117
            Q GD     G GG SIYG  F D     LKH G G+LSMANAGPNTNGSQFFI      
Sbjct: 61  CQAGDFTNHNGTGGKSIYGSRFPD-ENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTD 119

Query: 118 HLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
            LDGKH +FG V  GM+V+K++ S  +    R    + I
Sbjct: 120 WLDGKHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVI 157

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score =  113 bits (284), Expect = 3e-33
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 11/164 (6%)

Query: 7   GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTG 66
           G P V L TS G+  +EL  + +P + +NF +    G+YNN+ FHR+I  F++QGG  T 
Sbjct: 3   GDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTE 62

Query: 67  TGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD-----G 121
             +          ++E    L++T   I     A  ++  SQFFI +A  + LD      
Sbjct: 63  QMQQKKPNPP--IKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120

Query: 122 KHTIFGRVCRGMEVIKRLGSVQTDK----DDRPIHDVKILRTSV 161
            + +FG+V +GM+V  ++  V T       + P   V IL  +V
Sbjct: 121 GYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  109 bits (274), Expect = 8e-32
 Identities = 64/162 (39%), Positives = 93/162 (57%), Gaps = 15/162 (9%)

Query: 9   PEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIK 55
           P V  + S     +G   +EL+    P+T  NF +     +        Y  S FHR+IK
Sbjct: 7   PVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIK 66

Query: 56  DFIVQGGDPT-GTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLA 114
           DF++QGGD   G G G  SIY   F DE   +L+H+  G+LSMAN+GP+TNG QFFIT +
Sbjct: 67  DFMIQGGDFVNGDGTGVASIYRGPFADEN-FKLRHSAPGLLSMANSGPSTNGCQFFITCS 125

Query: 115 PASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
               LDGKH +FG++  G+ V++++ +V T  +++P   V I
Sbjct: 126 KCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVI 167

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 2e-31
 Identities = 68/157 (43%), Positives = 87/157 (55%), Gaps = 11/157 (7%)

Query: 9   PEVTLETS-----MGSFTVELYYKHSPRTCRNFAELS---RRGYYNNSKFHRIIKDFIVQ 60
           P+V ++        G   + L     P T  NF  L    +   +  S FHRII  F+ Q
Sbjct: 2   PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQ 61

Query: 61  GGDPT-GTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHL 119
           GGD T   G GG SIYG  F+D     LKHTG G+LSMAN+GPNTNGSQFF+T      L
Sbjct: 62  GGDFTNHNGTGGKSIYGKKFDD-ENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 120

Query: 120 DGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKI 156
           DGKH +FG V  G++V++++   Q  KD +P   V I
Sbjct: 121 DGKHVVFGEVTEGLDVLRQI-EAQGSKDGKPKQKVII 156

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  106 bits (265), Expect = 3e-30
 Identities = 55/171 (32%), Positives = 86/171 (50%), Gaps = 16/171 (9%)

Query: 2   LASDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNS 48
           L ++   P V ++ +     +G F  EL+    P+T  NF +     Y        Y N+
Sbjct: 10  LLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNT 69

Query: 49  KFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQ 108
            FHR+IK+F++QGGD       G         D+   ++KH   G+LSMAN+GPNTNG Q
Sbjct: 70  IFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQ 129

Query: 109 FFITLAPASHLDGKHTIFGRVCRG--MEVIKRLGSVQTD-KDDRPIHDVKI 156
           FFIT      LDGK+ +FGR+     + ++K++ +V       +P   + +
Sbjct: 130 FFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINV 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d1zx8a1	124	Hypothetical protein TM1367 {Thermotoga maritima [	94.86

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-50  Score=295.17  Aligned_cols=154  Identities=49%  Similarity=0.865  Sum_probs=145.7

Q ss_pred             EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 031256           10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKH   89 (163)
Q Consensus        10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~   89 (163)
                      .|.|+|++|+|+||||++.||++|+||++||+.+||+|+.|||+++++++|+||+...+.++...++..++.|..+.++|
T Consensus         2 sV~~~T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~e~~~~~~~   81 (159)
T d2ok3a1           2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKH   81 (159)
T ss_dssp             EEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTCCS
T ss_pred             EEEEEeCCeEEEEEEcCCCChHHHHHHHHHHhhhcccceeEecccCCeEEEeCCccccCCCCcccCCCccccccccCCCC
Confidence            48999999999999999999999999999999999999999999999999999998777777777888888888888999


Q ss_pred             CcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCC-CCCcccceEEEEEEEcC
Q 031256           90 TGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDK-DDRPIHDVKILRTSVKD  163 (163)
Q Consensus        90 ~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~-~~~p~~~i~I~~~~vl~  163 (163)
                      .++|+|+|++.++++++|||||++++.|+||++|+|||||++||++|++|++.++++ +++|.++|+|.+|+|++
T Consensus        82 ~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i~~  156 (159)
T d2ok3a1          82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA  156 (159)
T ss_dssp             CSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEEC
T ss_pred             CCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999875 57899999999999984

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.9e-50  Score=293.21  Aligned_cols=153  Identities=49%  Similarity=0.869  Sum_probs=147.6

Q ss_pred             CEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCC
Q 031256            9 PEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELK   88 (163)
Q Consensus         9 ~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~   88 (163)
                      ..|+|+|++|+|+||||++.||++|+||++||+++||+|+.|||++|++++|+||+.+.+.++.+.++..+++|....++
T Consensus         2 ~~~~i~T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~   81 (155)
T d2fu0a1           2 KSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDHLN   81 (155)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCBTTBC
T ss_pred             ceEEEEEcccEEEEEEcCCCChHHHHHHhhHhhCCccccceeeeeeecceeeccCCCCCCcCCcccCCCccccccccccc
Confidence            46889999999999999999999999999999999999999999999999999999988888888899999999888899


Q ss_pred             CCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEEE
Q 031256           89 HTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTSV  161 (163)
Q Consensus        89 ~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~v  161 (163)
                      |.++|+++|++.++++++|||||++++.|+||++|+|||||++||+||++|++.+++++++|+++|+|.+|.|
T Consensus        82 ~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~i  154 (155)
T d2fu0a1          82 HSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI  154 (155)
T ss_dssp             SSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEE
T ss_pred             cCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-50  Score=295.63  Aligned_cols=153  Identities=70%  Similarity=1.263  Sum_probs=147.4

Q ss_pred             CCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCC
Q 031256            8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPEL   87 (163)
Q Consensus         8 ~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l   87 (163)
                      +++|.|+|++|+|+||||++.||++|+||++||+.+||+|+.|||+++++++|+|++.+++.++.+.++..++.|.++.+
T Consensus        11 ~p~v~~~T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~e~~~~~   90 (166)
T d1xwna1          11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDL   90 (166)
T ss_dssp             CCEEEEEESSCEEEEEECTTTCHHHHHHHHHHHHHTSSTTCCEEEEETTTEEEECCSTTTTSSCCCSSCSCCCCCCCTTC
T ss_pred             CCEEEEEECceeEEEEEcCCCChHHHHHHHHHHhcCCcCceeeeEEcccEEEEeCCCCCCCCCCccCCCCccccccCCCC
Confidence            56999999999999999999999999999999999999999999999999999999998888888888899999988889


Q ss_pred             CCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEE
Q 031256           88 KHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTS  160 (163)
Q Consensus        88 ~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~  160 (163)
                      +|.++|+|+|+++++++++|||||++++.++||++|+|||+|++|||||++|++++++++++|.++|+|.++.
T Consensus        91 ~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~I~I~~a~  163 (166)
T d1xwna1          91 KFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAY  163 (166)
T ss_dssp             CSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCBSSCCCEEEEE
T ss_pred             CCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCCCCCeEEEEee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999875

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-49  Score=292.08  Aligned_cols=153  Identities=51%  Similarity=0.925  Sum_probs=146.5

Q ss_pred             EEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 031256           10 EVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKH   89 (163)
Q Consensus        10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~   89 (163)
                      .|.|+|++|+|+||||.+.||++|+||++||+.++|+|+.|||++|++++|+|++..++.++.+.++..+++|..+.++|
T Consensus         2 ~v~l~T~~G~i~IeL~~~~aP~tv~nF~~L~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~E~~~~l~~   81 (178)
T d1zkca1           2 YVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEFRPNLSH   81 (178)
T ss_dssp             EEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSCCCBTTBSCBCCCCCTTCCS
T ss_pred             EEEEEeCCEEEEEEEcCCCChHHHHHHHHHHhcCCcCceEeeeccceeEEecCCccCCCCCCcccCCCCcCCccccccCC
Confidence            68999999999999999999999999999999999999999999999999999998888888888899999998888999


Q ss_pred             CcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCC-CCCCcccceEEEEEEEc
Q 031256           90 TGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTD-KDDRPIHDVKILRTSVK  162 (163)
Q Consensus        90 ~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~~p~~~i~I~~~~vl  162 (163)
                      ..+|+|+|+++++++++|||||+++++++||++|+|||+|++||++|++|++.+++ .+++|.++|+|.+|+|+
T Consensus        82 ~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~Il  155 (178)
T d1zkca1          82 TGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF  155 (178)
T ss_dssp             CSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEE
T ss_pred             CCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999887 46899999999999997

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=4.1e-49  Score=289.98  Aligned_cols=153  Identities=63%  Similarity=1.074  Sum_probs=146.5

Q ss_pred             CCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCC
Q 031256            8 PPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPEL   87 (163)
Q Consensus         8 ~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l   87 (163)
                      ..+|.|+|++|+|+||||+++||++|+||++||+.+||+++.|||+++++++|||++.+...++.+.+...++.|..+.+
T Consensus        16 ~~~V~l~T~~G~i~IeL~~d~aP~tv~nF~~L~~~g~Y~~~~f~rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~e~~~~l   95 (169)
T d2b71a1          16 RGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKEL   95 (169)
T ss_dssp             SCEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSSCCCBTTBSCBCCCCCTTC
T ss_pred             ccEEEEEeCceeEEEEEeCCCCcHHHHHHHHHhhCCccceeeeccccceeeEeccccccccCCCcccccccccccccccc
Confidence            56899999999999999999999999999999999999999999999999999999998877788888888888888889


Q ss_pred             CCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEEE
Q 031256           88 KHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRTS  160 (163)
Q Consensus        88 ~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~~  160 (163)
                      +|.++|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++++++++++|.++|+|.+++
T Consensus        96 ~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  168 (169)
T d2b71a1          96 KHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS  168 (169)
T ss_dssp             CCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred             CCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEEcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999985

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-47  Score=278.42  Aligned_cols=159  Identities=50%  Similarity=0.862  Sum_probs=146.1

Q ss_pred             CCCCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCC
Q 031256            3 ASDDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDE   82 (163)
Q Consensus         3 ~~~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e   82 (163)
                      .|+....+++|+|+.|+|+||||.++||++|+||++||+.+||+|+.|||+++++++|+|++.+...++.......+..+
T Consensus         4 ~~~~~~~~a~~~T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~   83 (164)
T d2a2na1           4 GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDE   83 (164)
T ss_dssp             SCCCCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCC
T ss_pred             CCccccCEEEEEeceeEEEEEEcCCCChHHHHHHHHHHhCCCcccceeeEEeeeeeEeecccccccCCCceeeecccccc
Confidence            35666789999999999999999999999999999999999999999999999999999999866655555555667777


Q ss_pred             CCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCC-CCCcccceEEEEEEE
Q 031256           83 IKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDK-DDRPIHDVKILRTSV  161 (163)
Q Consensus        83 ~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~-~~~p~~~i~I~~~~v  161 (163)
                      ..+.++|.++|+++|++.++++++|||||++++.++||++|+|||+|++||+||++|++.+++. +++|.++|+|.+|.|
T Consensus        84 ~~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~v~i  163 (164)
T d2a2na1          84 FHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV  163 (164)
T ss_dssp             CCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             cccccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEEEEE
Confidence            7788999999999999999999999999999999999999999999999999999999999875 589999999999987

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.2e-47  Score=280.15  Aligned_cols=152  Identities=45%  Similarity=0.811  Sum_probs=139.9

Q ss_pred             CCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcC---------------CcCCceEEEeecCceeecCCCCCCCCCC
Q 031256            7 GPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRG---------------YYNNSKFHRIIKDFIVQGGDPTGTGRGG   71 (163)
Q Consensus         7 ~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~---------------~y~g~~f~rv~~~~~iq~G~~~~~~~~~   71 (163)
                      ++.+++|+|+.|+|+||||+++||++|+||++||+.+               ||+++.|||+++++++|+|++.+.+.++
T Consensus         2 ~~~~~ti~T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~~~~~~   81 (171)
T d1w74a_           2 ATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGG   81 (171)
T ss_dssp             CSEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSSSSCC
T ss_pred             CcEEEEEEECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccCCCCCC
Confidence            4678999999999999999999999999999999876               7999999999999999999998665544


Q ss_pred             CCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEE--cCHHHHHHHhcCCCCCCCC
Q 031256           72 DSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVC--RGMEVIKRLGSVQTDKDDR  149 (163)
Q Consensus        72 ~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi--~G~~vl~~I~~~~~~~~~~  149 (163)
                      .   ...++.|..+.++|.++|+++|++.++++++|||||++++.|+||++|+|||||+  +|||||++|++.+++++++
T Consensus        82 ~---~~~~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~  158 (171)
T d1w74a_          82 P---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDR  158 (171)
T ss_dssp             S---SCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSC
T ss_pred             c---ccccccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCc
Confidence            4   3345667678899999999999999999999999999999999999999999999  4999999999999999999


Q ss_pred             cccceEEEEEEE
Q 031256          150 PIHDVKILRTSV  161 (163)
Q Consensus       150 p~~~i~I~~~~v  161 (163)
                      |.++|+|.+|.|
T Consensus       159 P~~~i~I~~v~i  170 (171)
T d1w74a_         159 PTDPVVIESITI  170 (171)
T ss_dssp             BSSCCEEEEEEE
T ss_pred             cCCCcEEEEEEE
Confidence            999999999987

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-47  Score=280.15  Aligned_cols=156  Identities=34%  Similarity=0.581  Sum_probs=138.9

Q ss_pred             CCCCCEEEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCC
Q 031256            5 DDGPPEVTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIK   84 (163)
Q Consensus         5 ~~~~~~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~   84 (163)
                      ++++++|+|+|+.|+|+||||+++||++|+||++||+.+||+|+.|||++|++++|+|+......  ...++..+++|.+
T Consensus         1 ~~g~~~V~l~T~~G~i~ieL~~~~aP~tv~nF~~L~~~~~Y~g~~fhRv~~~~~iq~G~~~~~~~--~~~~~~~~~~e~~   78 (166)
T d1v9ta_           1 AKGDPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKKPNPPIKNEAD   78 (166)
T ss_dssp             CCCSCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTCC--BCCCCCCBCCCGG
T ss_pred             CCCCCEEEEEECCeeEEEEEeCCCChHHHHHHHHHhhCCccccceeeEEEEEeecccCCcCCccc--ccCCCCCcccccc
Confidence            46889999999999999999999999999999999999999999999999999999999874322  2344667888877


Q ss_pred             CCCCCCcceEEEeee-CCCCCCcccEEEEcCCCCCCCCC-----CcEEEEEEcCHHHHHHHhcCCCCCC----CCcccce
Q 031256           85 PELKHTGAGILSMAN-AGPNTNGSQFFITLAPASHLDGK-----HTIFGRVCRGMEVIKRLGSVQTDKD----DRPIHDV  154 (163)
Q Consensus        85 ~~l~~~~~G~v~~~~-~~~~~~~sqFfI~l~~~~~ld~~-----~~vfG~Vi~G~~vl~~I~~~~~~~~----~~p~~~i  154 (163)
                      ..++|. +|.|+|++ .++++++|||||++++.++||+.     |+|||+|++|||+|++|+++++++.    ++|+++|
T Consensus        79 ~~~~~~-rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~~~~~~~~~P~~~v  157 (166)
T d1v9ta_          79 NGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPV  157 (166)
T ss_dssp             GSCCCC-TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCC
T ss_pred             cccccc-CCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcccCCCCCCCccCCCe
Confidence            778777 89999988 67899999999999999988864     8999999999999999999988654    4899999


Q ss_pred             EEEEEEEcC
Q 031256          155 KILRTSVKD  163 (163)
Q Consensus       155 ~I~~~~vl~  163 (163)
                      +|.+|+||.
T Consensus       158 ~I~~~~vlp  166 (166)
T d1v9ta_         158 VILSATVLP  166 (166)
T ss_dssp             BEEEEEECC
T ss_pred             EEEEEEEcC
Confidence            999999984

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=4.7e-47  Score=278.15  Aligned_cols=156  Identities=42%  Similarity=0.730  Sum_probs=139.6

Q ss_pred             CCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcCC---cCCceEEEeecCceeecCCCC-CCCCCCCCCC
Q 031256            5 DDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQGGDPT-GTGRGGDSIY   75 (163)
Q Consensus         5 ~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~~---y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~   75 (163)
                      |+.+++|+||++     .|+|+||||.+.||++|+||++||+.++   |+|+.|||++|++++|+|++. .++.++.+.+
T Consensus         2 p~~t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~   81 (166)
T d1xo7a_           2 PVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIY   81 (166)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             CCCCCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccccccCcEEEEEcCCCEEEeCCCCCCCCCCCCCCC
Confidence            567889999866     7999999999999999999999999988   999999999999999999977 3455555555


Q ss_pred             CCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceE
Q 031256           76 GHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVK  155 (163)
Q Consensus        76 ~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~  155 (163)
                      +..++.+. .. .|..+|+|+|++.++++++|||||+++++++||++|+|||||++||++|++|++.+++.+++|.++|+
T Consensus        82 ~~~~~~~~-~~-~~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~  159 (166)
T d1xo7a_          82 GTRFDDEN-LK-IKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVK  159 (166)
T ss_dssp             BSCBCCCC-CC-SCCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEE
T ss_pred             Cccccccc-cc-ccccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCCCEE
Confidence            65555553 33 44459999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEc
Q 031256          156 ILRTSVK  162 (163)
Q Consensus       156 I~~~~vl  162 (163)
                      |.+|++|
T Consensus       160 I~~cgvl  166 (166)
T d1xo7a_         160 INDCGVL  166 (166)
T ss_dssp             EEEEEEC
T ss_pred             EEeeEeC
Confidence            9999997

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=5.8e-47  Score=279.11  Aligned_cols=155  Identities=46%  Similarity=0.773  Sum_probs=141.5

Q ss_pred             CCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhc----------CCcCCceEEEeecCceeecCCCC-CCCCC
Q 031256            7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRR----------GYYNNSKFHRIIKDFIVQGGDPT-GTGRG   70 (163)
Q Consensus         7 ~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~----------~~y~g~~f~rv~~~~~iq~G~~~-~~~~~   70 (163)
                      ++++|+||++     .|+|+||||.++||+||+||++||++          ++|+++.|||++|++++|+|++. .++.+
T Consensus         2 ~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~~~   81 (172)
T d2igva1           2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTG   81 (172)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCCCCCC
Confidence            4688999998     69999999999999999999999964          68999999999999999999976 45667


Q ss_pred             CCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCc
Q 031256           71 GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRP  150 (163)
Q Consensus        71 ~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p  150 (163)
                      +...++..+++|. ..+.|..+|+|+|++.++++++|||||+++++|+||++|+|||+|++|||||++|++.++ ++++|
T Consensus        82 ~~~~~~~~~~~e~-~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~-~~g~P  159 (172)
T d2igva1          82 GESIYGEKFPDEN-FKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKP  159 (172)
T ss_dssp             CCBTTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCC
T ss_pred             CcccCCCccCccc-cccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCC-CCCCC
Confidence            7778888888884 456777799999999999999999999999999999999999999999999999998775 67899


Q ss_pred             ccceEEEEEEEcC
Q 031256          151 IHDVKILRTSVKD  163 (163)
Q Consensus       151 ~~~i~I~~~~vl~  163 (163)
                      +++|+|.+|++|+
T Consensus       160 ~~~i~I~~cG~l~  172 (172)
T d2igva1         160 VKDCMIADCGQLK  172 (172)
T ss_dssp             SSCEEEEEEEEEC
T ss_pred             CCCeEEEeccccC
Confidence            9999999999986

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-47  Score=276.20  Aligned_cols=155  Identities=46%  Similarity=0.745  Sum_probs=140.4

Q ss_pred             CCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcC---CcCCceEEEeecCceeecCCCCC-CCCCCCCCCCC
Q 031256            7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRG---YYNNSKFHRIIKDFIVQGGDPTG-TGRGGDSIYGH   77 (163)
Q Consensus         7 ~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~---~y~g~~f~rv~~~~~iq~G~~~~-~~~~~~~~~~~   77 (163)
                      ++++|+||++     .|+|+||||++.||++|+||++||+++   +|+++.|||++|++++|+|++.. .+.++.+.++.
T Consensus         1 ~n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~~~~~~~~   80 (164)
T d2z6wa1           1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS   80 (164)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBS
T ss_pred             CCCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCcccCCcEEEEecccceEecCCccCCCCCCCccccCC
Confidence            4789999999     699999999999999999999999766   79999999999999999999874 45566677777


Q ss_pred             cCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEE
Q 031256           78 VFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKIL  157 (163)
Q Consensus        78 ~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~  157 (163)
                      .++++ .+.+.|..+|+|+|++.++++++|||||++.+.++||++|+|||+|++|||||++|++.++ ++++|.++|+|.
T Consensus        81 ~~~~~-~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~-~~~~P~~~i~I~  158 (164)
T d2z6wa1          81 RFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVIT  158 (164)
T ss_dssp             CBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEE
T ss_pred             cCCcc-ccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCC-CCCCCCCCEEEE
Confidence            77776 4566777799999999999999999999999999999999999999999999999999986 578999999999


Q ss_pred             EEEEcC
Q 031256          158 RTSVKD  163 (163)
Q Consensus       158 ~~~vl~  163 (163)
                      +|++|.
T Consensus       159 ~cG~l~  164 (164)
T d2z6wa1         159 DCGQLS  164 (164)
T ss_dssp             EEEECC
T ss_pred             eCeecC
Confidence            999983

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=6.9e-47  Score=278.84  Aligned_cols=157  Identities=40%  Similarity=0.722  Sum_probs=140.4

Q ss_pred             CCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcCC--------cCCceEEEeecCceeecCCCCC-CCCC
Q 031256            5 DDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQGGDPTG-TGRG   70 (163)
Q Consensus         5 ~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~f~rv~~~~~iq~G~~~~-~~~~   70 (163)
                      ++.+|+|+|+++     .|+|+||||++.||++|+||++||+.+|        |+++.|||++|++++|+|+... .+..
T Consensus         3 ~~~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~~   82 (173)
T d1qoia_           3 SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTG   82 (173)
T ss_dssp             SCCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCC
T ss_pred             CCCCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccccccCCCCCcCCcccceeccceeeccCCcccCCcce
Confidence            457899999998     7999999999999999999999999998        9999999999999999999873 3333


Q ss_pred             CCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCc
Q 031256           71 GDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRP  150 (163)
Q Consensus        71 ~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p  150 (163)
                      ....+...+.++. +...|..+|+|+|++.++++++|||||++++.++||++|+|||+|++|||||++|++.+++++++|
T Consensus        83 ~~~~~~~~~~~~~-~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P  161 (173)
T d1qoia_          83 VASIYRGPFADEN-FKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP  161 (173)
T ss_dssp             CCCTTSSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             eecccCCcccccc-cccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcC
Confidence            4444555566663 455666799999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEEEc
Q 031256          151 IHDVKILRTSVK  162 (163)
Q Consensus       151 ~~~i~I~~~~vl  162 (163)
                      +++|+|.+|+.|
T Consensus       162 ~~~i~I~~cGel  173 (173)
T d1qoia_         162 KLPVVISQCGEM  173 (173)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEcccCC
Confidence            999999999975

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-46  Score=273.38  Aligned_cols=152  Identities=45%  Similarity=0.734  Sum_probs=136.1

Q ss_pred             CCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHh---cCCcCCceEEEeecCceeecCCCCCC-CCCCCCCCCCc
Q 031256            8 PPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSR---RGYYNNSKFHRIIKDFIVQGGDPTGT-GRGGDSIYGHV   78 (163)
Q Consensus         8 ~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~---~~~y~g~~f~rv~~~~~iq~G~~~~~-~~~~~~~~~~~   78 (163)
                      +|.|+||++     .|+|+||||.++||++|+||++||+   .++|+++.|||++|++++|+|++... +.++.+.++..
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~~~~~~~~   80 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKK   80 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccccccCCcEEEEEEEeeeEEeeeccCCCCCCCccccCcc
Confidence            578999997     6999999999999999999999994   46899999999999999999998853 44555666666


Q ss_pred             CCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEE
Q 031256           79 FEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILR  158 (163)
Q Consensus        79 ~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~  158 (163)
                      +.++ .+.++|..+|+++|++.++++++|||||+++++++||++|+|||||++|||||++|+..+ +++++|+++|+|++
T Consensus        81 ~~~~-~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~-~~~~~P~~~i~I~~  158 (161)
T d2r99a1          81 FDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQG-SKDGKPKQKVIIAD  158 (161)
T ss_dssp             BCCC-CCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC-CTTCCCSSCEEEEE
T ss_pred             cccc-ccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccC-CCCCcCCCCEEEEe
Confidence            5555 567888889999999999999999999999999999999999999999999999998766 47899999999999


Q ss_pred             EEE
Q 031256          159 TSV  161 (163)
Q Consensus       159 ~~v  161 (163)
                      |+.
T Consensus       159 CGe  161 (161)
T d2r99a1         159 CGE  161 (161)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            984

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=1.5e-46  Score=279.21  Aligned_cols=159  Identities=46%  Similarity=0.767  Sum_probs=143.1

Q ss_pred             CCCCCCEEEEEe-----cceEEEEEEcCCCChHHHHHHHHHHhcC---CcCCceEEEeecCceeecCCCCC-CCCCCCCC
Q 031256            4 SDDGPPEVTLET-----SMGSFTVELYYKHSPRTCRNFAELSRRG---YYNNSKFHRIIKDFIVQGGDPTG-TGRGGDSI   74 (163)
Q Consensus         4 ~~~~~~~v~~~t-----s~G~i~ieL~~~~aP~~~~nF~~l~~~~---~y~g~~f~rv~~~~~iq~G~~~~-~~~~~~~~   74 (163)
                      .|+.+.+|+|++     +.|+|+||||.+.||++|+||++||+++   +|+++.|||++|++++|+|++.. ++.++.+.
T Consensus         3 ~p~~t~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~   82 (182)
T d2rmca_           3 GPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSI   82 (182)
T ss_dssp             SCEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCCSSSSSSCCCBT
T ss_pred             CCccCCeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCCccccCceeeeeecCceEEcCCCCCCCCCCCCCC
Confidence            456688899995     4799999999999999999999999655   79999999999999999999873 45556677


Q ss_pred             CCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccce
Q 031256           75 YGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDV  154 (163)
Q Consensus        75 ~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i  154 (163)
                      ++..++++ ...+.|..+|+|+|++.++++++|||||+++++++||++|+|||+|++||+||++|++.+++++++|.++|
T Consensus        83 ~~~~~~~~-~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v  161 (182)
T d2rmca_          83 YGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDC  161 (182)
T ss_dssp             TBSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCE
T ss_pred             cCCccccc-ccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCCCe
Confidence            77777777 45667777999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEcC
Q 031256          155 KILRTSVKD  163 (163)
Q Consensus       155 ~I~~~~vl~  163 (163)
                      +|.+|++|+
T Consensus       162 ~I~~~g~l~  170 (182)
T d2rmca_         162 TIVNSGKID  170 (182)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEeeEEe
Confidence            999999874

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=3.7e-46  Score=275.15  Aligned_cols=155  Identities=47%  Similarity=0.817  Sum_probs=139.7

Q ss_pred             CCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhc-----------CCcCCceEEEeecCceeecCCCC-CCCC
Q 031256            7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRR-----------GYYNNSKFHRIIKDFIVQGGDPT-GTGR   69 (163)
Q Consensus         7 ~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~-----------~~y~g~~f~rv~~~~~iq~G~~~-~~~~   69 (163)
                      ..++|+||++     .|+|+||||++.||++|+||++||+.           ++|+++.|||+++++++|+|+.. +.+.
T Consensus         2 ~~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~~   81 (174)
T d1a33a_           2 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGT   81 (174)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCCC
Confidence            4678999999     69999999999999999999999964           58999999999999999999987 3444


Q ss_pred             CCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCC
Q 031256           70 GGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDR  149 (163)
Q Consensus        70 ~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~  149 (163)
                      +..+.++....++ ...++|.++|+++|++.++++++|||||++++.|+||++|+|||+|++|||||++|++.+++++++
T Consensus        82 ~~~~~~~~~~~~~-~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~  160 (174)
T d1a33a_          82 GGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNR  160 (174)
T ss_dssp             CCCCTTSSCBCCC-CSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCccCcccccc-ccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCC
Confidence            5555555554444 567889989999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceEEEEEEEc
Q 031256          150 PIHDVKILRTSVK  162 (163)
Q Consensus       150 p~~~i~I~~~~vl  162 (163)
                      |.++|+|.+|++|
T Consensus       161 P~~~i~I~~cGel  173 (174)
T d1a33a_         161 PLADVVILNCGEL  173 (174)
T ss_dssp             BSSCEEEEEEEEC
T ss_pred             CCCCEEEEeeEEE
Confidence            9999999999986

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=3.5e-46  Score=272.51  Aligned_cols=151  Identities=46%  Similarity=0.793  Sum_probs=137.5

Q ss_pred             CEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcCC---cCCceEEEeecCceeecCCCC-CCCCCCCCCCCCcC
Q 031256            9 PEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQGGDPT-GTGRGGDSIYGHVF   79 (163)
Q Consensus         9 ~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~~---y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~~~~~   79 (163)
                      ..|+||++     +|+|+||||+++||++|+||++||+.++   |+++.|||++|++++|+|++. +++.++.+.+...+
T Consensus         2 ~~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~   81 (162)
T d2cfea1           2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKF   81 (162)
T ss_dssp             CCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCB
T ss_pred             CeEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCCccCCCEEEEEEecceEecCCCCCCCCCCCcccCCCcc
Confidence            46899988     6999999999999999999999999986   999999999999999999987 44555666677777


Q ss_pred             CCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceEEEEE
Q 031256           80 EDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVKILRT  159 (163)
Q Consensus        80 ~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~I~~~  159 (163)
                      .+| ++.++|.++|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|+..+ +++++|.++|+|.+|
T Consensus        82 ~~e-~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~-~~~~~P~~~i~I~~c  159 (162)
T d2cfea1          82 ADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEG-SGSGKPRSRIEIAKC  159 (162)
T ss_dssp             CCC-CCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC-CTTSCCSSCEEEEEE
T ss_pred             ccc-cCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCC-CCCCCCCCCeEEEee
Confidence            777 567899989999999999999999999999999999999999999999999999998766 578999999999999


Q ss_pred             EE
Q 031256          160 SV  161 (163)
Q Consensus       160 ~v  161 (163)
                      +|
T Consensus       160 gv  161 (162)
T d2cfea1         160 GV  161 (162)
T ss_dssp             EE
T ss_pred             Ec
Confidence            98

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=2.9e-46  Score=277.62  Aligned_cols=158  Identities=46%  Similarity=0.775  Sum_probs=143.1

Q ss_pred             CCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcC---CcCCceEEEeecCceeecCCCC-CCCCCCCCCC
Q 031256            5 DDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRG---YYNNSKFHRIIKDFIVQGGDPT-GTGRGGDSIY   75 (163)
Q Consensus         5 ~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~---~y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~   75 (163)
                      |+.+.+|+|+++     .|+|+||||.+.||++|+||++||+++   +|+++.|||++|++++|+|+.. +++.++.+.+
T Consensus         3 p~~t~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~~~~~   82 (182)
T d1h0pa_           3 PKVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIY   82 (182)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             CCCCCeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcccCCcCCceEEEEEecceEEcCCCCCCCCCCCCCCC
Confidence            456778999776     699999999999999999999999665   8999999999999999999987 4566667777


Q ss_pred             CCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccceE
Q 031256           76 GHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPIHDVK  155 (163)
Q Consensus        76 ~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~~~i~  155 (163)
                      +..+.++ ....+|..+|+++|++.++++++|||||+++++++||++|+|||||++||++|++|++.+++++++|.++|+
T Consensus        83 ~~~~~~~-~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~  161 (182)
T d1h0pa_          83 GEKFADE-NFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVI  161 (182)
T ss_dssp             BSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSCEE
T ss_pred             CCccCcc-cccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCCEE
Confidence            7777777 456677779999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEcC
Q 031256          156 ILRTSVKD  163 (163)
Q Consensus       156 I~~~~vl~  163 (163)
                      |.+|++|+
T Consensus       162 I~~cG~l~  169 (182)
T d1h0pa_         162 IAASGHIA  169 (182)
T ss_dssp             EEEEEEEE
T ss_pred             EEECCeEe
Confidence            99999873

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.9e-45  Score=270.51  Aligned_cols=154  Identities=47%  Similarity=0.773  Sum_probs=137.3

Q ss_pred             CCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhc---------CCcCCceEEEeecCceeecCCCC-CCCCCC
Q 031256            7 GPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRR---------GYYNNSKFHRIIKDFIVQGGDPT-GTGRGG   71 (163)
Q Consensus         7 ~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~---------~~y~g~~f~rv~~~~~iq~G~~~-~~~~~~   71 (163)
                      ..++|+||.+     .|+|+||||++.||++|+||++||++         ++|+++.|||+++++++|+|+.. +++.+.
T Consensus         2 ~r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~~~~   81 (170)
T d1qnga_           2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGG   81 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCccCcccceEEEeCceEEecCccCCCCCCC
Confidence            4678998764     79999999999999999999999973         57999999999999999999987 344455


Q ss_pred             CCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcc
Q 031256           72 DSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDDRPI  151 (163)
Q Consensus        72 ~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~p~  151 (163)
                      ...++..++++ .+.+.|.++|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++.++ ++++|.
T Consensus        82 ~~~~~~~~~~~-~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~-~~g~P~  159 (170)
T d1qnga_          82 ESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVK  159 (170)
T ss_dssp             CBTTBSCBCCC-CCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCS
T ss_pred             cccCCCccccc-cccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCC-CCcCCc
Confidence            56667777776 4677888899999999999999999999999999999999999999999999999999886 568999


Q ss_pred             cceEEEEEEEc
Q 031256          152 HDVKILRTSVK  162 (163)
Q Consensus       152 ~~i~I~~~~vl  162 (163)
                      ++|+|++|++|
T Consensus       160 ~~i~I~~CG~l  170 (170)
T d1qnga_         160 RSVVITDCGEL  170 (170)
T ss_dssp             SCEEEEEEEEC
T ss_pred             cCEEEEeeEcC
Confidence            99999999986

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=1.4e-45  Score=274.73  Aligned_cols=158  Identities=39%  Similarity=0.729  Sum_probs=141.8

Q ss_pred             CCCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcCC--------cCCceEEEeecCceeecCCCCC-CCC
Q 031256            4 SDDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRGY--------YNNSKFHRIIKDFIVQGGDPTG-TGR   69 (163)
Q Consensus         4 ~~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~~--------y~g~~f~rv~~~~~iq~G~~~~-~~~   69 (163)
                      ..+.+++|+||++     .|+|+||||++.||++|+||++||++++        |+|+.|||+++++++|+|+... .+.
T Consensus        12 ~~~~np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~   91 (186)
T d1z81a1          12 TNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGS   91 (186)
T ss_dssp             SSTTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSC
T ss_pred             cCCCCCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCccccCCc
Confidence            4456899999998     4999999999999999999999999998        9999999999999999999873 344


Q ss_pred             CCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcC--HHHHHHHhcCCCCC-
Q 031256           70 GGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRG--MEVIKRLGSVQTDK-  146 (163)
Q Consensus        70 ~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G--~~vl~~I~~~~~~~-  146 (163)
                      .....++..++++ ...++|.++|+++|++.++++++|||||+++++++||++|+|||||++|  ||+|++|+..++++ 
T Consensus        92 ~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~  170 (186)
T d1z81a1          92 GSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPY  170 (186)
T ss_dssp             CCCBTTBSCCCCC-CCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTT
T ss_pred             ccccccCCccccc-ccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCC
Confidence            4455667777766 4567888899999999999999999999999999999999999999998  99999999998875 


Q ss_pred             CCCcccceEEEEEEEc
Q 031256          147 DDRPIHDVKILRTSVK  162 (163)
Q Consensus       147 ~~~p~~~i~I~~~~vl  162 (163)
                      .++|.++|+|.+|++|
T Consensus       171 ~~~P~~~i~I~~CGel  186 (186)
T d1z81a1         171 IYKPKIPINVVECGEL  186 (186)
T ss_dssp             TCCBSSCEEEEEEEEC
T ss_pred             CCccCCCEEEEeCCcC
Confidence            6899999999999986

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3e-45  Score=274.83  Aligned_cols=157  Identities=45%  Similarity=0.769  Sum_probs=141.0

Q ss_pred             CCCCCEEEEEec-----ceEEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCceEEEeecCceeecCCCCC-C
Q 031256            5 DDGPPEVTLETS-----MGSFTVELYYKHSPRTCRNFAELSRRG-----------YYNNSKFHRIIKDFIVQGGDPTG-T   67 (163)
Q Consensus         5 ~~~~~~v~~~ts-----~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~rv~~~~~iq~G~~~~-~   67 (163)
                      .+.+|+|+||++     .|+|+||||.+.||++|+||++||+.+           +|+|+.|||++|++++|+|+... .
T Consensus        11 ~~~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~~   90 (195)
T d1ihga2          11 NPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQN   90 (195)
T ss_dssp             CTTSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCCC
Confidence            456899999998     699999999999999999999999754           69999999999999999999773 4


Q ss_pred             CCCCCCCCCCcCCCCCCCCCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC
Q 031256           68 GRGGDSIYGHVFEDEIKPELKHTGAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCRGMEVIKRLGSVQTDKD  147 (163)
Q Consensus        68 ~~~~~~~~~~~~~~e~~~~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~  147 (163)
                      +.++...++..+++| ...+.|..+|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++.++ ++
T Consensus        91 ~~~~~~~~~~~~~~~-~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t-~~  168 (195)
T d1ihga2          91 GTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KG  168 (195)
T ss_dssp             SSCCCBTTBSCBCCC-CCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCE-ET
T ss_pred             CCCCccCCCCccccc-ccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCC-CC
Confidence            555566667777777 4567888899999999999999999999999999999999999999999999999999887 47


Q ss_pred             CCcccceEEEEEEEcC
Q 031256          148 DRPIHDVKILRTSVKD  163 (163)
Q Consensus       148 ~~p~~~i~I~~~~vl~  163 (163)
                      ++|.++|+|.+|++|+
T Consensus       169 ~~P~~~i~I~~cG~l~  184 (195)
T d1ihga2         169 EKPAKLCVIAECGELK  184 (195)
T ss_dssp             TEESSCEEEEEEEEEC
T ss_pred             CCcCCCeEEEECcccC
Confidence            8999999999999985

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-45  Score=270.08  Aligned_cols=150  Identities=31%  Similarity=0.547  Sum_probs=132.8

Q ss_pred             EEEEecceEEEEEEcCCCChHHHHHHHHHHhcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCCCCCCC
Q 031256           11 VTLETSMGSFTVELYYKHSPRTCRNFAELSRRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKPELKHT   90 (163)
Q Consensus        11 v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~l~~~   90 (163)
                      |.|+|+.|+|+||||++.||++|+||++||+.+||+|+.|||+++++++|+|++.....  ...++..+++|..+.++|.
T Consensus         2 V~l~T~~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~fhrv~~~~~iq~G~~~~~~~--~~~~~~~~~~e~~~~~~h~   79 (164)
T d1lopa_           2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMK--QKATKEPIKNEANNGLKNT   79 (164)
T ss_dssp             EEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEETTTE--ECCCCCCBCCCCCSSCCCC
T ss_pred             EEEEeCCeEEEEEEcCCCCHHHHHHHHHHHHccCcCCceeeEEcCCceeeeeccccCCc--CCccCCCccccccccccce
Confidence            88999999999999999999999999999999999999999999999999998763322  2234567788877788888


Q ss_pred             cceEEEeee-CCCCCCcccEEEEcCCC--------CCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCC----CcccceEEE
Q 031256           91 GAGILSMAN-AGPNTNGSQFFITLAPA--------SHLDGKHTIFGRVCRGMEVIKRLGSVQTDKDD----RPIHDVKIL  157 (163)
Q Consensus        91 ~~G~v~~~~-~~~~~~~sqFfI~l~~~--------~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~----~p~~~i~I~  157 (163)
                       +|.|+|++ .++++++|||||++.+.        ++||++|+|||+|++||+||++|+++++++.+    +|+++|+|.
T Consensus        80 -~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P~~~v~I~  158 (164)
T d1lopa_          80 -RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE  158 (164)
T ss_dssp             -TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEE
T ss_pred             -eeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCcCCCeEEE
Confidence             88888887 57899999999999754        78899999999999999999999999887654    899999999


Q ss_pred             EEEEcC
Q 031256          158 RTSVKD  163 (163)
Q Consensus       158 ~~~vl~  163 (163)
                      ++.|+|
T Consensus       159 ~v~I~e  164 (164)
T d1lopa_         159 SVTVSE  164 (164)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999986

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=1.1e-44  Score=266.72  Aligned_cols=147  Identities=49%  Similarity=0.782  Sum_probs=109.4

Q ss_pred             ecceEEEEEEcCCCChHHHHHHHHHHhcCC---cCCceEEEeecCceeecCCCC-CCCCCCCCCCCCcCCCCCCCCCCCC
Q 031256           15 TSMGSFTVELYYKHSPRTCRNFAELSRRGY---YNNSKFHRIIKDFIVQGGDPT-GTGRGGDSIYGHVFEDEIKPELKHT   90 (163)
Q Consensus        15 ts~G~i~ieL~~~~aP~~~~nF~~l~~~~~---y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~~~~~~~e~~~~l~~~   90 (163)
                      |++|+|+||||.++||++|+||++||+.++   |+++.|||++|++++|+|++. .++.++...++..+.++ ...++|.
T Consensus        18 T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   96 (171)
T d2c3ba1          18 TKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADE-NFSRKHD   96 (171)
T ss_dssp             CEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC-----------------------CHHHH
T ss_pred             ceeeEEEEEEcCCCChHHHHHHHHHhhhcccccccCceeeEEEEEEeeEcCCccCCCCCCCCcCCCCccccc-cccccCC
Confidence            467999999999999999999999999887   999999999999999999987 34444445555555555 5667888


Q ss_pred             cceEEEeeeCCCCCCcccEEEEcCCCCCCCCCCcEEEEEEc--CHHHHHHHhcCCCCC-CCCcccceEEEEEEEc
Q 031256           91 GAGILSMANAGPNTNGSQFFITLAPASHLDGKHTIFGRVCR--GMEVIKRLGSVQTDK-DDRPIHDVKILRTSVK  162 (163)
Q Consensus        91 ~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld~~~~vfG~Vi~--G~~vl~~I~~~~~~~-~~~p~~~i~I~~~~vl  162 (163)
                      .+|+|+|++.++++++|||||++++.|+||++|+|||||++  ||+||++|++.+++. +.+|..+|+|.+|+.|
T Consensus        97 ~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1          97 KKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             HTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred             CCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCCCCcCCCCCEEEEeCccC
Confidence            89999999999999999999999999999999999999995  999999999998866 3478999999999986

>d1zx8a1 b.62.1.3 (A:1-124) Hypothetical protein TM1367 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: TM1367-like
domain: Hypothetical protein TM1367
species: Thermotoga maritima [TaxId: 2336]

Probab=94.86  E-value=0.12  Score=33.82  Aligned_cols=101  Identities=13%  Similarity=0.163  Sum_probs=63.3

Q ss_pred             EEEEEecceEEEEEEcCCCChHHHHHHHHHH----hcCCcCCceEEEeecCceeecCCCCCCCCCCCCCCCCcCCCCCCC
Q 031256           10 EVTLETSMGSFTVELYYKHSPRTCRNFAELS----RRGYYNNSKFHRIIKDFIVQGGDPTGTGRGGDSIYGHVFEDEIKP   85 (163)
Q Consensus        10 ~v~~~ts~G~i~ieL~~~~aP~~~~nF~~l~----~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~   85 (163)
                      ++.|....+.++++|..  .|.|++.|.+..    +-+.| |...+--.|                     ..+..|..+
T Consensus         2 ki~l~f~~~~~~~~l~~--s~~ta~~i~~~LPl~~~~~~w-G~Eiyf~~p---------------------~~l~~e~~~   57 (124)
T d1zx8a1           2 RVELLFESGKCVIDLNE--EYEVVKLLKEKIPFESVVNTW-GEEIYFSTP---------------------VNVQKMENP   57 (124)
T ss_dssp             EEEEECSSCEEEEEEET--TSHHHHHHHHHCSEEEECEES-SSEEEEECS---------------------CCCCCCSSE
T ss_pred             eEEEEeCCeEEEEEeCC--CHHHHHHHHHhCCeEEEHHHc-cceEEEeCC---------------------cCCCcccCc
Confidence            56777888999999984  788999999885    11224 222211111                     112222122


Q ss_pred             CCCCCcceEEEeeeCCCCCCcccEEEEcCCCCCCC------CCCcEEEEEEcCHHHHHHHh
Q 031256           86 ELKHTGAGILSMANAGPNTNGSQFFITLAPASHLD------GKHTIFGRVCRGMEVIKRLG  140 (163)
Q Consensus        86 ~l~~~~~G~v~~~~~~~~~~~sqFfI~l~~~~~ld------~~~~vfG~Vi~G~~vl~~I~  140 (163)
                      +-. .+.|-+++-..+.+     +.|-.++.|.-+      ....++||+..+++.|..+.
T Consensus        58 ~~~-~~~GDiaYw~pg~~-----iaifyg~tp~S~~~irlas~~n~iGki~~~~~~l~~i~  112 (124)
T d1zx8a1          58 REV-VEIGDVGYWPPGKA-----LCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKIK  112 (124)
T ss_dssp             ESS-BCTTEEEEEGGGTE-----EEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGCC
T ss_pred             ccc-cccccEEEECCCCE-----EEEEECCccCCCCcccccCcceEeEEecCCHHHHhcCC
Confidence            212 34788888777665     888887766543      34668999999987776663