Citrus Sinensis ID: 031285

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MYGAIRLSPSLRFRTLLPTNPRDQSRDLFVPPRILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI
Secondary Structure (PSIPRED)
ccccEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHcccccccccccccccEEEcccHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHccEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccccccccccccccccccccccccccccccccHHHHHcccccccEEEEEccccccEEHcccccccccccEEEEEEcccHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHcHHHHHHHHHHcccEEEEEEEcccccHHHHHHccEEEEEcc
Coil and Loop (DISEMBL)
mygairlspslrfrtllptnprdqsrdlfvpprilsisssnitksvnfrgkiDNVIRVTkhegsikelnedddddhapvsipltpigsesqFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLaadyhprlrfynvdvnaVPHKLVARAGVMVSLMI
Flexible Loop (DISEMBL)
mygairlspslrfrtllptnprdqsrdlfvpprilsisssnitksvnfrgkidnvirvTKHEgsikelnedddddhapVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAgvmvslmi
Low Complexity Region (SEG)
MYGAIRLSPSLRFRTLLPTNPRDQSRDLFVPPRILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI
Disordered region (IsUnstruct)
***************************LFVPPRILSISSSNITKSVNFRGKIDNVIRVT********************************FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS***
Disordered Region (DISOPRED)
********************************************SVNFRG********************************LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI
Disordered Region (DISEMBL)
MYGAIRLSPSLRFRTLLPTNPRDQSRDLFVPPRILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI
Disordered Region (DISPRO)
***AIRLSPSLRFRTLLPTNPRDQSRDLFVPPRILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYGAIRLSPSLRFRTLLPTNPRDQSRDLFVPPRILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q8VZT6	192	Thioredoxin-like 3-2, chl	yes	no	0.901	0.760	0.484	1e-33
Q9FG36	210	Thioredoxin-like 3-1, chl	no	no	0.487	0.376	0.556	6e-22
Q6Z7L3	193	Thioredoxin-like 3-1, chl	no	no	0.462	0.388	0.460	2e-13
P22217	103	Thioredoxin-1 OS=Saccharo	yes	no	0.351	0.553	0.338	0.0004
P34723	106	Thioredoxin OS=Penicilliu	yes	no	0.358	0.547	0.338	0.0007

>sp|Q8VZT6|TRL32_ARATH Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1

 Score =  142 bits (357), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 103/161 (63%), Gaps = 15/161 (9%)

Query: 1   MYGAIRLSPSLR-----FRTLLPTNPRDQSRDLFVPPRILSISSSNITKSVNFRGKIDNV 55
           M   + LS SLR        L+P  P  Q+   F  PR     S   T  +    +    
Sbjct: 1   MSEIVNLSSSLRSLNPKISPLVP--PYRQTSSSFSRPRNFKYHS--FTDKICLAAERIRA 56

Query: 56  IRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWC 115
           + + K +G ++EL      D +PVS+ L PI  ES FD+V+ +AQ+L ESV+IVWMA+WC
Sbjct: 57  VDIQKQDGGLQEL------DDSPVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWC 110

Query: 116 RKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156
           RKCIYLKPKLEKLAA+++PRLRFY+VDVNAVP++LV+RAGV
Sbjct: 111 RKCIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGV 151

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG36|TRL31_ARATH Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3

 Score =  103 bits (256), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 58/79 (73%)

Query: 78  PVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLR 137
           P ++ + PI +  + D V++ A+QL + +II WMASWCRKCIYLKPKLEKLAA+Y+ R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 138 FYNVDVNAVPHKLVARAGV 156
           FY VDVN VP  LV R  +
Sbjct: 153 FYYVDVNKVPQTLVKRGNI 171

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z7L3|TRL31_ORYSJ Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774100 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 81  IPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYN 140
           + +  I S  + D  +  + +  + +II WMASWCRKCIYLKP+LEK+A ++ P +RFY 
Sbjct: 80  VEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRLEKIAGEF-PGVRFYF 138

Query: 141 VDVNAVPHKLVARAGV 156
           VDVN VP  +V R  +
Sbjct: 139 VDVNKVPQTVVKRGNI 154

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P22217|TRX1_YEAST Thioredoxin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRX1 PE=1 SV=3

 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 83  LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
           +T   + S+FD  IA+    D+ V++ + A+WC  C  + P +EK +  Y P+  FY +D
Sbjct: 2   VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLD 56

Query: 143 VN 144
           V+
Sbjct: 57  VD 58

Participates as a hydrogen donor in redox reactions through the reversible oxidation of its active center dithiol to a disulfide, accompanied by the transfer of 2 electrons and 2 protons. It is involved in many cellular processes, including deoxyribonucleotide synthesis, repair of oxidatively damaged proteins, protein folding, sulfur metabolism, and redox homeostasis. Thioredoxin-dependent enzymes include phosphoadenosine-phosphosulfate reductase MET16, alkyl-hydroperoxide reductase DOT5, thioredoxin peroxidases TSA1 and TSA2, alkyl hydroperoxide reductase AHP1, and peroxiredoxin HYR1. Thioredoxin is also involved in protection against reducing stress. As part of the LMA1 complex, it is involved in the facilitation of vesicle fusion such as homotypic vacuole and ER-derived COPII vesicle fusion with the Golgi. This activity does not require the redox mechanism.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P34723|THIO_PENCH Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1

 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 83  LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
           +TPI S +++   + +A      V++ + A+WC  C  + P LEKL ++ H  ++FY VD
Sbjct: 3   VTPIKSVAEYKEKVTDATG---PVVVDFHATWCGPCKAIAPALEKL-SETHTGIQFYKVD 58

Query: 143 VN 144
           V+
Sbjct: 59  VD 60

Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions.

Penicillium chrysogenum (taxid: 5076)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
359486613	195	PREDICTED: thioredoxin-like 3-2, chlorop	0.888	0.738	0.536	3e-36
297810515	194	thioredoxin family protein [Arabidopsis	0.932	0.778	0.493	2e-34
9955581	186	thioredoxin-like protein [Arabidopsis th	0.913	0.795	0.478	6e-32
22326600	192	thioredoxin-like 3-2 [Arabidopsis thalia	0.901	0.760	0.484	7e-32
224113077	128	predicted protein [Populus trichocarpa]	0.555	0.703	0.729	2e-31
224097824	128	predicted protein [Populus trichocarpa]	0.555	0.703	0.718	5e-31
351726345	198	uncharacterized protein LOC100527081 [Gl	0.580	0.474	0.613	5e-29
242063520	188	hypothetical protein SORBIDRAFT_04g03740	0.518	0.446	0.678	5e-28
212721912	165	uncharacterized protein LOC100193002 [Ze	0.512	0.503	0.698	8e-28
195626248	193	thioredoxin-like 8 [Zea mays]	0.487	0.409	0.708	6e-27

>gi|359486613|ref|XP_002273467.2| PREDICTED: thioredoxin-like 3-2, chloroplastic-like [Vitis vinifera] gi|296085989|emb|CBI31430.3| unnamed protein product [Vitis vinifera]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/166 (53%), Positives = 107/166 (64%), Gaps = 22/166 (13%)

Query: 1   MYGAIRLSPSLRFRTLLPTNPRDQSRDLFVPPRILSISSSNIT----KSVNFRGKID--- 53
           M    R  PSL    LLPT PR  SR L    +  SI   +I+    KS+NF  KI    
Sbjct: 1   MSDTFRFYPSLT--PLLPTTPRGSSRIL----QQFSIPGLSISDFPRKSLNFPQKIGVSG 54

Query: 54  ---NVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVW 110
                +     EG +++L      D +PVS+ L PI S++QFDR++ EAQQL+ESV IVW
Sbjct: 55  GKVWALAAWNQEGPLQDL------DDSPVSVELKPISSDTQFDRILGEAQQLEESVAIVW 108

Query: 111 MASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156
           MA+WCRKCIYLKPKLEKLAA+Y+PRLRFY VDVN VPHKLVARA V
Sbjct: 109 MATWCRKCIYLKPKLEKLAAEYYPRLRFYCVDVNTVPHKLVARAAV 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810515|ref|XP_002873141.1| thioredoxin family protein [Arabidopsis lyrata subsp. lyrata] gi|297318978|gb|EFH49400.1| thioredoxin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 104/164 (63%), Gaps = 13/164 (7%)

Query: 1   MYGAIRLSPSLR-----FRTLLPTNPRDQSRDLFVPPRILSISSSNITKSVNFRGKIDNV 55
           M   + LS SLR        L+P     Q+  LF  PR     S   T  +    +    
Sbjct: 1   MSEVVNLSSSLRSLNPKISALVPPYLSRQTSSLFSQPRYFKFHS--FTDKICLAAERFRE 58

Query: 56  IRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWC 115
           +   K +G ++EL      D +PVS+ L PI  ES FD+V+ EAQ+L ESV+IVWMA+WC
Sbjct: 59  VDALKQDGGLQEL------DDSPVSVELGPICGESHFDQVMEEAQKLGESVVIVWMAAWC 112

Query: 116 RKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS 159
           RKCIYLKPKLEKLAA+++PRLRFY+VDVNAVP++LV+RAGV VS
Sbjct: 113 RKCIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGVTVS 156

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9955581|emb|CAC05508.1| thioredoxin-like protein [Arabidopsis thaliana]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 104/163 (63%), Gaps = 15/163 (9%)

Query: 1   MYGAIRLSPSLR-----FRTLLPTNPRDQSRDLFVPPRILSISSSNITKSVNFRGKIDNV 55
           M   + LS SLR        L+P  P  Q+   F  PR     S   T  +    +    
Sbjct: 1   MSEIVNLSSSLRSLNPKISPLVP--PYRQTSSSFSRPRNFKYHS--FTDKICLAAERIRA 56

Query: 56  IRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWC 115
           + + K +G ++EL      D +PVS+ L PI  ES FD+V+ +AQ+L ESV+IVWMA+WC
Sbjct: 57  VDIQKQDGGLQEL------DDSPVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWC 110

Query: 116 RKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV 158
           RKCIYLKPKLEKLAA+++PRLRFY+VDVNAVP++LV+RAGV +
Sbjct: 111 RKCIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGVTL 153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326600|ref|NP_196046.2| thioredoxin-like 3-2 [Arabidopsis thaliana] gi|52000834|sp|Q8VZT6.1|TRL32_ARATH RecName: Full=Thioredoxin-like 3-2, chloroplastic; AltName: Full=Thioredoxin WCRKC-2; Flags: Precursor gi|17380752|gb|AAL36206.1| putative thioredoxin [Arabidopsis thaliana] gi|21436391|gb|AAM51365.1| putative thioredoxin [Arabidopsis thaliana] gi|332003337|gb|AED90720.1| thioredoxin-like 3-2 [Arabidopsis thaliana]

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 78/161 (48%), Positives = 103/161 (63%), Gaps = 15/161 (9%)

Query: 1   MYGAIRLSPSLR-----FRTLLPTNPRDQSRDLFVPPRILSISSSNITKSVNFRGKIDNV 55
           M   + LS SLR        L+P  P  Q+   F  PR     S   T  +    +    
Sbjct: 1   MSEIVNLSSSLRSLNPKISPLVP--PYRQTSSSFSRPRNFKYHS--FTDKICLAAERIRA 56

Query: 56  IRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWC 115
           + + K +G ++EL      D +PVS+ L PI  ES FD+V+ +AQ+L ESV+IVWMA+WC
Sbjct: 57  VDIQKQDGGLQEL------DDSPVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWC 110

Query: 116 RKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156
           RKCIYLKPKLEKLAA+++PRLRFY+VDVNAVP++LV+RAGV
Sbjct: 111 RKCIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGV 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113077|ref|XP_002316383.1| predicted protein [Populus trichocarpa] gi|222865423|gb|EEF02554.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/96 (72%), Positives = 77/96 (80%), Gaps = 6/96 (6%)

Query: 61  HEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIY 120
            EGS++E+      D +PVS  L PI SESQFDRVIAEAQQL ESVIIVW   WCRKCIY
Sbjct: 1   QEGSLQEV------DDSPVSFELEPIYSESQFDRVIAEAQQLVESVIIVWCVVWCRKCIY 54

Query: 121 LKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156
           LKPKLEKLAADY+ RLRFY V+VN +PHKLVARAGV
Sbjct: 55  LKPKLEKLAADYNRRLRFYCVNVNNIPHKLVARAGV 90

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097824|ref|XP_002311079.1| predicted protein [Populus trichocarpa] gi|222850899|gb|EEE88446.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 75/96 (78%), Gaps = 6/96 (6%)

Query: 61  HEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIY 120
            EG ++E+      D +PVS  L PI SESQFDRVIAEAQQL+ESVIIVW   WCRKCIY
Sbjct: 1   QEGPLQEV------DDSPVSFELEPIYSESQFDRVIAEAQQLEESVIIVWCVVWCRKCIY 54

Query: 121 LKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156
           LKPKLEKLAADY+ R RFY VDVN VPHKLV RAGV
Sbjct: 55  LKPKLEKLAADYYRRSRFYRVDVNNVPHKLVTRAGV 90

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726345|ref|NP_001238403.1| uncharacterized protein LOC100527081 [Glycine max] gi|255631512|gb|ACU16123.1| unknown [Glycine max]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 78/101 (77%), Gaps = 7/101 (6%)

Query: 56  IRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWC 115
           +R++  +GS +E  E        V + L PI SE+ FDRV+A+AQ LDE V++VWMA+WC
Sbjct: 58  VRLSPQQGSSQEEEES-------VFLYLQPISSENHFDRVLAKAQTLDEGVVVVWMANWC 110

Query: 116 RKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156
           RKCIYLKPKLEKLAA+Y+PRL+FY+VDVN V HKLV RAGV
Sbjct: 111 RKCIYLKPKLEKLAAEYYPRLQFYSVDVNTVSHKLVTRAGV 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242063520|ref|XP_002453049.1| hypothetical protein SORBIDRAFT_04g037400 [Sorghum bicolor] gi|241932880|gb|EES06025.1| hypothetical protein SORBIDRAFT_04g037400 [Sorghum bicolor]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 69/84 (82%)

Query: 75  DHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP 134
           +  PV + L PI SE Q DRV+A+AQQLD  ++++WMASWCRKCIYLKPKLEKLAA+YHP
Sbjct: 74  EEGPVWVELEPITSEQQLDRVLADAQQLDIPIVLLWMASWCRKCIYLKPKLEKLAAEYHP 133

Query: 135 RLRFYNVDVNAVPHKLVARAGVMV 158
           R+RFY +DVN VP KLV RAGV +
Sbjct: 134 RVRFYCIDVNCVPQKLVNRAGVTL 157

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212721912|ref|NP_001131643.1| uncharacterized protein LOC100193002 [Zea mays] gi|194692132|gb|ACF80150.1| unknown [Zea mays] gi|413939503|gb|AFW74054.1| hypothetical protein ZEAMMB73_857730 [Zea mays]

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 68/83 (81%)

Query: 78  PVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLR 137
           PVS+ L PI SE Q D V+ EA+QL   ++++WMASWCRKCIYLKPKLEKLAA+YHPR+R
Sbjct: 76  PVSVELEPIASEQQLDWVLGEARQLQLPIVLLWMASWCRKCIYLKPKLEKLAAEYHPRIR 135

Query: 138 FYNVDVNAVPHKLVARAGVMVSL 160
           FY +DVN VP KLV RAGV VSL
Sbjct: 136 FYCIDVNCVPQKLVNRAGVTVSL 158

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195626248|gb|ACG34954.1| thioredoxin-like 8 [Zea mays]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 56/79 (70%), Positives = 65/79 (82%)

Query: 78  PVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLR 137
           PVS+ L PI SE Q D V+ EAQQL   ++++WMASWCRKCIYLKPKLEKLAA+YHPR+R
Sbjct: 76  PVSVDLEPIASEQQLDWVLGEAQQLQLPIVLLWMASWCRKCIYLKPKLEKLAAEYHPRIR 135

Query: 138 FYNVDVNAVPHKLVARAGV 156
           FY +DVN VP KLV RAGV
Sbjct: 136 FYCIDVNCVPQKLVNRAGV 154

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2146693	192	WCRKC2 "WCRKC thioredoxin 2" [	0.876	0.739	0.490	2e-31
TAIR|locus:2170174	214	WCRKC1 "WCRKC thioredoxin 1" [	0.518	0.392	0.535	1.5e-21
FB|FBgn0036442	139	CG13473 [Drosophila melanogast	0.358	0.417	0.355	7.8e-07
WB|WBGene00021548	107	trx-4 [Caenorhabditis elegans	0.351	0.532	0.355	2.6e-06
SGD|S000004033	103	TRX1 "Cytoplasmic thioredoxin	0.351	0.553	0.338	1.5e-05
SGD|S000003441	104	TRX2 "Cytoplasmic thioredoxin	0.370	0.576	0.328	2.4e-05
UNIPROTKB|P73263	109	slr1139 "Thioredoxin-like prot	0.351	0.522	0.266	0.00059
POMBASE|SPAC7D4.07c	103	trx1 "cytosolic thioredoxin Tr	0.401	0.631	0.281	0.00059
TAIR|locus:2011932	182	THX "thioredoxin X" [Arabidops	0.382	0.340	0.343	0.00091

TAIR|locus:2146693 WCRKC2 "WCRKC thioredoxin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 77/157 (49%), Positives = 102/157 (64%)

Query:     5 IRLSPSLR-----FRTLLPTNPRDQSRDLFVPPRILSISSSNITKSVNFRGKIDNVIRVT 59
             + LS SLR        L+P  P  Q+   F  PR     S   T  +    +    + + 
Sbjct:     5 VNLSSSLRSLNPKISPLVP--PYRQTSSSFSRPRNFKYHS--FTDKICLAAERIRAVDIQ 60

Query:    60 KHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCI 119
             K +G ++EL      D +PVS+ L PI  ES FD+V+ +AQ+L ESV+IVWMA+WCRKCI
Sbjct:    61 KQDGGLQEL------DDSPVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCI 114

Query:   120 YLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV 156
             YLKPKLEKLAA+++PRLRFY+VDVNAVP++LV+RAGV
Sbjct:   115 YLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGV 151

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2170174 WCRKC1 "WCRKC thioredoxin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 45/84 (53%), Positives = 60/84 (71%)

Query:    78 PVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLR 137
             P ++ + PI +  + D V++ A+QL + +II WMASWCRKCIYLKPKLEKLAA+Y+ R +
Sbjct:    93 PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query:   138 FYNVDVNAVPHKLVARAGVMVSLM 161
             FY VDVN VP  LV R  + V  +
Sbjct:   153 FYYVDVNKVPQTLVKRGNISVKCL 176

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

FB|FBgn0036442 CG13473 [Drosophila melanogaster (taxid:7227)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 21/59 (35%), Positives = 39/59 (66%)

Query:    86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
             + S+S FD++I +A   ++ V++ + A+WC  C  + P+LE+LA+DY  R+    +DV+
Sbjct:    11 VDSKSYFDKLIDDAGT-NKYVLVEFFATWCGPCAMIGPRLEQLASDYFGRMLVLKIDVD 68

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

WB|WBGene00021548 trx-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query:    86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN 144
             I  + +F  + AE +   + VI+ + ASWC  C  +KP++E+LAA++  RL    +DV+
Sbjct:     5 IKDDDEFKTIFAEKKT--QPVILFFTASWCGPCQMIKPRVEELAAEHKDRLSILKIDVD 61

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

SGD|S000004033 TRX1 "Cytoplasmic thioredoxin isoenzyme" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query:    83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
             +T   + S+FD  IA+    D+ V++ + A+WC  C  + P +EK +  Y P+  FY +D
Sbjct:     2 VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLD 56

Query:   143 VN 144
             V+
Sbjct:    57 VD 58

GO:0000324 "fungal-type vacuole" evidence=IPI

GO:0042144 "vacuole fusion, non-autophagic" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS;IDA

GO:0080058 "protein deglutathionylation" evidence=IGI;IDA

GO:0045454 "cell redox homeostasis" evidence=IEA;TAS

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0000011 "vacuole inheritance" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0034599 "cellular response to oxidative stress" evidence=ISS

SGD|S000003441 TRX2 "Cytoplasmic thioredoxin isoenzyme" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query:    83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
             +T + S S++D  +A   +L   V++ + A+WC  C  + P +EK A  Y     FY +D
Sbjct:     2 VTQLKSASEYDSALASGDKL---VVVDFFATWCGPCKMIAPMIEKFAEQYSDAA-FYKLD 57

Query:   143 VNAV 146
             V+ V
Sbjct:    58 VDEV 61

GO:0000324 "fungal-type vacuole" evidence=IPI

GO:0034599 "cellular response to oxidative stress" evidence=ISS

GO:0080058 "protein deglutathionylation" evidence=IGI;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000011 "vacuole inheritance" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

GO:0045454 "cell redox homeostasis" evidence=IEA;TAS

GO:0042144 "vacuole fusion, non-autophagic" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0000103 "sulfate assimilation" evidence=IGI

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

UNIPROTKB|P73263 slr1139 "Thioredoxin-like protein slr1139" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 87 (35.7 bits), Expect = 0.00059, P = 0.00059
 Identities = 16/60 (26%), Positives = 35/60 (58%)

Query:    88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
             ++++F++   E Q   + V++ + ASWC  C  + P ++ +A DY  +L+   ++V+  P
Sbjct:     7 TDAEFEQ---ETQGQTKPVLVYFWASWCGPCRLMAPAIQAIAKDYGDKLKVLKLEVDPNP 63

GO:0005515 "protein binding" evidence=IPI

POMBASE|SPAC7D4.07c trx1 "cytosolic thioredoxin Trx1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 87 (35.7 bits), Expect = 0.00059, P = 0.00059
 Identities = 20/71 (28%), Positives = 37/71 (52%)

Query:    86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
             +   S+F  ++ +    D+ V++ + A+WC  C  + PK E+ +  Y     F  VDV+ 
Sbjct:     5 VSDSSEFKSIVCQ----DKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDAT-FIKVDVDQ 59

Query:   146 VPHKLVARAGV 156
             +  ++ A AGV
Sbjct:    60 LS-EIAAEAGV 69

GO:0003756 "protein disulfide isomerase activity" evidence=IMP;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=EXP;IDA

GO:0016209 "antioxidant activity" evidence=IDA

GO:0022900 "electron transport chain" evidence=IEA

GO:0034614 "cellular response to reactive oxygen species" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IMP

GO:0045454 "cell redox homeostasis" evidence=IMP

GO:1900409 "positive regulation of cellular response to oxidative stress" evidence=IMP

TAIR|locus:2011932 THX "thioredoxin X" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00091, P = 0.00091
 Identities = 23/67 (34%), Positives = 39/67 (58%)

Query:    86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
             IG ES+F   + E+ Q    V++ ++A+WC  C  + P +E L+ +Y  +L    +D +A
Sbjct:    74 IG-ESEFSSTVLESAQ---PVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDA 129

Query:   146 VPHKLVA 152
              P KL+A
Sbjct:   130 NP-KLIA 135


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      162       162   0.00079  107 3  11 22  0.49    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  147 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.94u 0.11s 19.05t   Elapsed:  00:00:01
  Total cpu time:  18.94u 0.11s 19.05t   Elapsed:  00:00:01
  Start:  Fri May 10 20:22:43 2013   End:  Fri May 10 20:22:44 2013

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	4e-10
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	3e-09
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	3e-07
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	4e-06
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	9e-06
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	1e-04
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	2e-04
cd02984	97	cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int	4e-04
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	5e-04
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	0.003
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	0.003

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 53.3 bits (129), Expect = 4e-10
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 90  SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHK 149
            +F+ +I  A+     V++ + A WC  C  + P LE+LA +Y P+++F  VDV+  P +
Sbjct: 1   EEFEELIKSAK----PVVVDFWAPWCGPCKAIAPVLEELAEEY-PKVKFVKVDVDENP-E 54

Query: 150 LVARAGVM 157
           L    GV 
Sbjct: 55  LAEEYGVR 62

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 51.1 bits (123), Expect = 3e-09
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           +++ FD  IA +   D+ V++ + A WC  C  + P LE+LA +Y  +++F  ++V+  P
Sbjct: 2   TDANFDETIASS---DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP 58

Query: 148 HKLVARAGVM 157
             + A+ G+ 
Sbjct: 59  -DIAAKYGIR 67

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
           + S+++F+  +++    +E VI+ + A WC  C  + P  E+ + +Y  ++ F  VDV+ 
Sbjct: 5   VTSQAEFESTLSQ----NELVIVDFYAEWCGPCKRIAPFYEECSKEY-TKMVFVKVDVDE 59

Query: 146 V 146
           +
Sbjct: 60  L 60

Length = 98

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 80  SIPLTPIGSESQFDRVIAEAQQLDES----VIIVWMASWCRKCIYLKPKLEKLAADYHPR 135
           S  L  + + + F+ +      L E     V++ + A WC  C    P LE+LA +Y   
Sbjct: 5   SFLLGELATAASFEELDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD 64

Query: 136 LRFYNVDVNAVPHKLVARAGVMV 158
           +    V+V+     L A  GV V
Sbjct: 65  VEVVAVNVDDENPDLAAEFGVAV 87

Length = 127

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 92  FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV 151
           FD  +A++   D+ V++ + A WC  C  L P+ EKLA +Y   ++F  VD +  P  L 
Sbjct: 10  FDEEVAKS---DKPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVDADENP-DLA 65

Query: 152 ARAGV 156
           +  GV
Sbjct: 66  SEYGV 70

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNA 145
           ++  FD ++ +     + V++ + A WC  C  L P+ EKLA +     ++    VD   
Sbjct: 4   TDDNFDELVKD----SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDC-T 58

Query: 146 VPHKLVARAGV 156
             + L +  GV
Sbjct: 59  ANNDLCSEYGV 69

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 90  SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHK 149
             FD+V+        + ++ + A WC  C  LKP+  K A +    ++   VD +   +K
Sbjct: 8   KNFDKVVHNTNY---TTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNK 64

Query: 150 -LVARAGV 156
            L  + GV
Sbjct: 65  PLCGKYGV 72

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 88  SESQFDRVIAEAQQLDESVIIV--WMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
           SE +F+ ++   +     ++++  W A W   C  +    E+LA +  P + F +++   
Sbjct: 1   SEEEFEELL---KSDASKLLVLHFW-APWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE 56

Query: 146 VP 147
           +P
Sbjct: 57  LP 58

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           +E+ F++ + ++ +    ++  W A WC  C  L P LEKLAA+Y  + +   V+ +A P
Sbjct: 29  TEANFEQEVIQSSREVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP 87

Query: 148 HKLVARAGV 156
             + A+ GV
Sbjct: 88  -MVAAQFGV 95

Length = 304

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 93  DRVIAEAQQL-----DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           + V+  A  L     ++   +++ ASWC      +P    L++ + P++R   ++ +++ 
Sbjct: 3   EEVLNIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMF-PQIRHLAIEESSIK 61

Query: 148 HKLVARAGV 156
             L++R GV
Sbjct: 62  PSLLSRYGV 70

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNA 145
           ++S FD+V+ + ++    V++ + A WC  C  L P+ EKLAA +     +    VD + 
Sbjct: 6   TDSNFDKVVGDDKK---DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62

Query: 146 VPHKLVARAGV 156
               L  + GV
Sbjct: 63  ANKDLAKKYGV 73

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.85
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.84
PHA02278	103	thioredoxin-like protein	99.81
PRK10996	139	thioredoxin 2; Provisional	99.8
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.8
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.8
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.79
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.78
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.78
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.78
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.77
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.77
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.76
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.76
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.75
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.75
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.72
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.72
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.71
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.71
PTZ00051	98	thioredoxin; Provisional	99.71
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.7
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.7
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.69
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.69
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.68
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.68
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.68
PRK09381	109	trxA thioredoxin; Provisional	99.68
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.67
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.67
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.67
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.66
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.65
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.64
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.64
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.64
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.64
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.63
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.62
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.6
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.6
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.6
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.6
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.59
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.59
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.59
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.55
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.54
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.51
PLN02309	457	5'-adenylylsulfate reductase	99.48
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.48
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.48
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.47
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.46
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.45
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.45
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.43
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.43
PTZ00102	477	disulphide isomerase; Provisional	99.42
PHA02125	75	thioredoxin-like protein	99.42
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.42
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.42
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.4
PTZ00102	477	disulphide isomerase; Provisional	99.38
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.38
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.38
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.36
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.35
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.35
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.33
PTZ00062	204	glutaredoxin; Provisional	99.33
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.3
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.29
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.28
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.28
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.28
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.26
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.25
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.23
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.21
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.2
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.18
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.15
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.14
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.13
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.13
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.09
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.09
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.09
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.08
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.06
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	99.06
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.04
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.03
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.01
PTZ00056	199	glutathione peroxidase; Provisional	98.98
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.98
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.97
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.95
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.93
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.92
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.9
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.86
smart00594	122	UAS UAS domain.	98.84
PLN02412	167	probable glutathione peroxidase	98.84
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	98.82
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.74
PTZ00256	183	glutathione peroxidase; Provisional	98.73
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.72
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.72
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.7
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.69
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.65
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.61
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.6
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.6
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.59
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.57
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.53
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.51
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.5
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.49
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.49
KOG1672	211	consensus ATP binding protein [Posttranslational m	98.47
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.4
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.37
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.33
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.31
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.31
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.3
PF13728	215	TraF: F plasmid transfer operon protein	98.29
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.28
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.19
PRK11200	85	grxA glutaredoxin 1; Provisional	98.18
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.12
PRK13599	215	putative peroxiredoxin; Provisional	98.11
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	98.08
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.06
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.05
PRK13190	202	putative peroxiredoxin; Provisional	98.04
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.03
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.02
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	98.0
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.0
PRK13191	215	putative peroxiredoxin; Provisional	97.96
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.96
PRK15000	200	peroxidase; Provisional	97.96
PRK13189	222	peroxiredoxin; Provisional	97.94
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.92
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.89
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.86
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.78
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.78
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	97.74
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.7
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	97.69
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	97.67
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.61
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	97.57
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.56
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.5
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.46
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.41
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	97.39
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.36
PHA03050	108	glutaredoxin; Provisional	97.34
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	97.28
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.28
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	97.12
PRK10329	81	glutaredoxin-like protein; Provisional	97.08
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.94
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	96.89
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	96.85
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.76
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	96.72
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	96.71
COG2143	182	Thioredoxin-related protein [Posttranslational mod	96.68
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	96.66
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	96.6
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	96.52
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	96.51
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	96.49
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	96.45
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	96.37
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	96.26
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	96.16
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	96.04
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	95.92
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	95.87
PRK10824	115	glutaredoxin-4; Provisional	95.84
PRK10638	83	glutaredoxin 3; Provisional	95.8
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.75
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	95.59
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	95.56
PTZ00062	204	glutaredoxin; Provisional	95.44
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	95.05
COG1331	667	Highly conserved protein containing a thioredoxin	95.0
cd02978	72	KaiB_like KaiB-like family; composed of the circad	94.78
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	94.62
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	94.49
KOG3170	240	consensus Conserved phosducin-like protein [Signal	94.47
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	94.17
PRK09301	103	circadian clock protein KaiB; Provisional	94.02
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	93.94
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	93.74
KOG3171	273	consensus Conserved phosducin-like protein [Signal	93.03
PHA03075	123	glutaredoxin-like protein; Provisional	93.01
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	92.59
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	92.5
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	91.62
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	90.69
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	90.59
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	89.82
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	89.52
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	89.49
PF07689	82	KaiB: KaiB domain; InterPro: IPR011649 The cyanoba	89.25
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	89.11
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	88.43
KOG2640	319	consensus Thioredoxin [Function unknown]	88.12
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	87.51
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	87.46
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	87.09
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	86.52
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	86.5
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	83.51
PRK12559	131	transcriptional regulator Spx; Provisional	82.51
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	82.43
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	82.35
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	81.31
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	81.11
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	80.59
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	80.46

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.1e-21  Score=143.26  Aligned_cols=77  Identities=29%  Similarity=0.593  Sum_probs=70.7

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      ....+.+..+|++.+.   +++.||||+|||+|||||+.+.|.++++.++|+++++|++||.|++++ ++.+|+|+.+||
T Consensus        43 ~~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-la~~Y~I~avPt  118 (150)
T KOG0910|consen   43 TLFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-LAEDYEISAVPT  118 (150)
T ss_pred             ccccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-hHhhcceeeeeE
Confidence            3444557889998883   899999999999999999999999999999999999999999999999 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus       119 v  119 (150)
T KOG0910|consen  119 V  119 (150)
T ss_pred             E
Confidence            5

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.84  E-value=1.2e-20  Score=133.28  Aligned_cols=71  Identities=21%  Similarity=0.331  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .++|++.+..  +.++++||+|||+|||||+.+.|.|+++++++.+.+.|++||+|++++ ++++|+|+++||+
T Consensus         2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~-la~~~~V~~iPTf   72 (114)
T cd02954           2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD-FNKMYELYDPPTV   72 (114)
T ss_pred             HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH-HHHHcCCCCCCEE
Confidence            4678888843  478999999999999999999999999999996678999999999999 9999999999985

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PHA02278 thioredoxin-like protein

Probab=99.81  E-value=1.2e-19  Score=126.36  Aligned_cols=71  Identities=17%  Similarity=0.275  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC----hHHHHHHcCCcccccC
Q 031285           87 GSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV----PHKLVARAGVMVSLMI  162 (162)
Q Consensus        87 ~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~la~~~~I~~~Pti  162 (162)
                      .+.++|++.+    ++++++||+|||+|||||+.+.|.++++++++..++.|++||+|.+    ++ ++++|+|+++||+
T Consensus         2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~-l~~~~~I~~iPT~   76 (103)
T PHA02278          2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREK-AVKLFDIMSTPVL   76 (103)
T ss_pred             CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHH-HHHHCCCccccEE
Confidence            3568899999    7899999999999999999999999999998756688999999986    46 9999999999985

>PRK10996 thioredoxin 2; Provisional

Probab=99.80  E-value=3.4e-19  Score=130.09  Aligned_cols=103  Identities=26%  Similarity=0.381  Sum_probs=85.1

Q ss_pred             hhhhhcccccccccCCCCCCCCC--C----CCcCceecC-CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHH
Q 031285           55 VIRVTKHEGSIKELNEDDDDDHA--P----VSIPLTPIG-SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEK  127 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~i~-~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~  127 (162)
                      |+++|++|...+++|...-...+  +    ..+....+. +..+|++.+    +.+++++|+||++||++|+.+.|.|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~   76 (139)
T PRK10996          1 MNTVCTSCQAINRLPDERIEDAAKCGRCGHDLFDGEVINATGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFED   76 (139)
T ss_pred             CeEECCCCCCcCCCCCccccCCCcCCCCCCccCCCCCEEcCHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHH
Confidence            45789999999888877543332  2    333333333 677899888    779999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          128 LAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       128 l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +++++.+++.|+++|++.+++ ++++|+|.++|++
T Consensus        77 l~~~~~~~v~~~~vd~~~~~~-l~~~~~V~~~Ptl  110 (139)
T PRK10996         77 VAAERSGKVRFVKVNTEAERE-LSARFRIRSIPTI  110 (139)
T ss_pred             HHHHhCCCeEEEEEeCCCCHH-HHHhcCCCccCEE
Confidence            999997789999999999998 9999999999985

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.80  E-value=3.3e-19  Score=123.60  Aligned_cols=71  Identities=14%  Similarity=0.214  Sum_probs=64.4

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+..  +.++++||+|||+||++|+.++|.|+++++++ +++.|++||++++.   + ++++|+|.++||+
T Consensus         2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~-l~~~~~V~~~Pt~   75 (103)
T cd02985           2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTME-LCRREKIIEVPHF   75 (103)
T ss_pred             CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHH-HHHHcCCCcCCEE
Confidence            56789999854  56999999999999999999999999999999 78999999999885   5 9999999999985

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.9e-19  Score=125.80  Aligned_cols=70  Identities=31%  Similarity=0.606  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +++.....+...+++++|+|||+|||||+.+.|.+++|+++| +++.|++||+|+..+ ++++++|..+||+
T Consensus         9 ~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y-~~v~Flkvdvde~~~-~~~~~~V~~~PTf   78 (106)
T KOG0907|consen    9 DLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKY-PDVVFLKVDVDELEE-VAKEFNVKAMPTF   78 (106)
T ss_pred             hHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHC-CCCEEEEEecccCHh-HHHhcCceEeeEE
Confidence            344333333355799999999999999999999999999999 459999999999766 9999999999985

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.79  E-value=5.3e-19  Score=129.25  Aligned_cols=76  Identities=20%  Similarity=0.296  Sum_probs=68.9

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      +..+.+.++|++.+..  +.+++|||+|||+|||||+.+.|.|+++++++++.+.|++||+|++++ +++.|+|++.|+
T Consensus         5 l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d-la~~y~I~~~~t   80 (142)
T PLN00410          5 LPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD-FNTMYELYDPCT   80 (142)
T ss_pred             HhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH-HHHHcCccCCCc
Confidence            4567789999999964  578999999999999999999999999999996669999999999999 999999997765

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.78  E-value=5.9e-19  Score=124.72  Aligned_cols=73  Identities=12%  Similarity=0.165  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHH-HHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV-ARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la-~~~~I~~~Pti  162 (162)
                      +.++|++.+.- .+.+++++|+|||+||++|+.++|.++++++++++.+.|++||++.+.+ ++ ++|+|+++|||
T Consensus        15 ~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~-l~~~~~~I~~~PTl   88 (113)
T cd03006          15 YKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG-KCRKQKHFFYFPVI   88 (113)
T ss_pred             chhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH-HHHHhcCCcccCEE
Confidence            44678776321 1789999999999999999999999999999997779999999999988 88 58999999986

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.78  E-value=8.6e-19  Score=120.56  Aligned_cols=70  Identities=19%  Similarity=0.312  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+    ..+++++|+|||+||++|+.+.|.|+++++++++.+.|++||++++++ ++++++|+++||+
T Consensus         7 ~~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~   76 (101)
T cd03003           7 DRGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-LCRSQGVNSYPSL   76 (101)
T ss_pred             CHhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-HHHHcCCCccCEE
Confidence            567899988    677999999999999999999999999999997789999999999988 9999999999985

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=7.9e-19  Score=140.53  Aligned_cols=77  Identities=29%  Similarity=0.619  Sum_probs=69.6

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++++ +..+|.+.+... +..+||||+||+|||++|+.+.|.+++++.+|++++++++||+|.+++ ++.+|||+++|++
T Consensus        25 I~dv-T~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-vAaqfgiqsIPtV  101 (304)
T COG3118          25 IKDV-TEANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-VAAQFGVQSIPTV  101 (304)
T ss_pred             ceec-hHhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-HHHHhCcCcCCeE
Confidence            5566 456888777664 777899999999999999999999999999999999999999999999 9999999999985

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.77  E-value=2e-18  Score=119.44  Aligned_cols=72  Identities=11%  Similarity=0.278  Sum_probs=65.3

Q ss_pred             ecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           85 PIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        85 ~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .+.+.++|++.+    +++++++|+|||+||++|+.+.|.|+++++++++ .+.|+++|+| +++ ++++|+|+++||+
T Consensus         3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~-~~~~~~v~~~Pt~   75 (102)
T cd02948           3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID-TLKRYRGKCEPTF   75 (102)
T ss_pred             EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH-HHHHcCCCcCcEE
Confidence            467889999998    7899999999999999999999999999999964 4899999999 667 8999999999985

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.77  E-value=2.4e-18  Score=121.02  Aligned_cols=71  Identities=18%  Similarity=0.240  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .++|++.+..  ..+++|||+|||+||+||+.+.|.|++++++|.+.+.|++||+|+.++ +++.|+|..+||.
T Consensus         2 ~~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-va~~y~I~amPtf   72 (114)
T cd02986           2 KKEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-YTQYFDISYIPST   72 (114)
T ss_pred             HHHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-HHHhcCceeCcEE
Confidence            3578888865  479999999999999999999999999999994349999999999999 9999999999983

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.76  E-value=2.1e-18  Score=119.22  Aligned_cols=69  Identities=22%  Similarity=0.454  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC-CChHHHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-AVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~la~~~~I~~~Pti  162 (162)
                      +.+.+++..  .+|++++|+|||+||++|+.++|.|+++++++ +++.+++||.+ ..++ ++++|+|+++||+
T Consensus         7 ~~~~~~~~~--~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~-~~~~~~~vd~~~~~~~-l~~~~~V~~~PT~   76 (100)
T cd02999           7 NIALDLMAF--NREDYTAVLFYASWCPFSASFRPHFNALSSMF-PQIRHLAIEESSIKPS-LLSRYGVVGFPTI   76 (100)
T ss_pred             hHHHHHHHh--cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHh-ccCceEEEECCCCCHH-HHHhcCCeecCEE
Confidence            456666654  78999999999999999999999999999999 56899999999 7777 9999999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.76  E-value=2.9e-18  Score=118.29  Aligned_cols=71  Identities=23%  Similarity=0.427  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+.   +.+++++|+|||+||++|+.+.|.|+++++++++.+.|++||++++.+ ++++|+|+++||+
T Consensus         7 ~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~i~~~Pt~   77 (104)
T cd03004           7 TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES-LCQQANIRAYPTI   77 (104)
T ss_pred             CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH-HHHHcCCCcccEE
Confidence            5678998873   567899999999999999999999999999997789999999999988 9999999999985

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.75  E-value=6.2e-18  Score=119.35  Aligned_cols=75  Identities=20%  Similarity=0.339  Sum_probs=70.0

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+++.++|.+.+    .++++++|+||++||++|+.+.|.++++++++ ++++|++||++++++ ++++|+|..+||
T Consensus         5 ~v~~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~~~~~-l~~~~~v~~vPt   78 (113)
T cd02989           5 KYREVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAEKAPF-LVEKLNIKVLPT   78 (113)
T ss_pred             CeEEeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcccCHH-HHHHCCCccCCE
Confidence            577888889999999    67899999999999999999999999999998 679999999999999 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        79 ~   79 (113)
T cd02989          79 V   79 (113)
T ss_pred             E
Confidence            5

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.75  E-value=5.6e-18  Score=115.16  Aligned_cols=69  Identities=25%  Similarity=0.413  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +|++.+..  +.+++++|+|||+||++|+.+.|.++++++.+.+.+.+++||++.+.+ ++++|+|.++|++
T Consensus         2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~i~~~Pt~   70 (96)
T cd02956           2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ-IAQQFGVQALPTV   70 (96)
T ss_pred             ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH-HHHHcCCCCCCEE
Confidence            57777743  458899999999999999999999999999997779999999999998 9999999999985

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.72  E-value=1.5e-17  Score=118.63  Aligned_cols=71  Identities=17%  Similarity=0.169  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChh--hh--hhhHhHHHHHHHh--CCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRK--CI--YLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~--C~--~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      +.++|++.+.   ++..++|++||++||+|  |+  .+.|.+++++.++  ++++.|++||++++++ +|++|||+++||
T Consensus        15 t~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~-La~~~~I~~iPT   90 (120)
T cd03065          15 NEKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK-VAKKLGLDEEDS   90 (120)
T ss_pred             ChhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH-HHHHcCCccccE
Confidence            4589999883   67889999999999988  99  8899999999998  7889999999999999 999999999999


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        91 l   91 (120)
T cd03065          91 I   91 (120)
T ss_pred             E
Confidence            6

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.72  E-value=1.5e-17  Score=117.02  Aligned_cols=76  Identities=24%  Similarity=0.410  Sum_probs=65.7

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+.++++ ++|.+.+... +.+++++|+||++||++|+.+.|.+++++++| +++.|++||++++ + ++++|+|.++||
T Consensus         5 ~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~-~~v~f~~vd~~~~-~-l~~~~~i~~~Pt   79 (113)
T cd02957           5 EVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKY-PETKFVKINAEKA-F-LVNYLDIKVLPT   79 (113)
T ss_pred             eEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEEchhh-H-HHHhcCCCcCCE
Confidence            3566766 8899888431 22489999999999999999999999999999 6799999999998 7 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        80 ~   80 (113)
T cd02957          80 L   80 (113)
T ss_pred             E
Confidence            5

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.71  E-value=2.2e-17  Score=115.96  Aligned_cols=73  Identities=19%  Similarity=0.421  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+|.+.+.. .+.+++++|+|||+||++|+.+.|.++++++++++ ++.+++||++.+++ ++++++|+++||+
T Consensus        10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~-l~~~~~V~~~Pt~   83 (111)
T cd02963          10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR-LARKLGAHSVPAI   83 (111)
T ss_pred             eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH-HHHHcCCccCCEE
Confidence            55677765432 14789999999999999999999999999999954 59999999999988 9999999999985

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.71  E-value=4e-17  Score=113.56  Aligned_cols=73  Identities=22%  Similarity=0.412  Sum_probs=64.3

Q ss_pred             eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC------CCeEEEEEECCCChHHHHHHcCCc
Q 031285           84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH------PRLRFYNVDVNAVPHKLVARAGVM  157 (162)
Q Consensus        84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~------~~v~~~~vd~d~~~~~la~~~~I~  157 (162)
                      .++ +.++|++.+    ..+++++|+|||+||++|+.+.|.|++++++++      +.+.+++||++.+.+ ++++|+|+
T Consensus         4 ~~l-~~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~-l~~~~~v~   77 (108)
T cd02996           4 VSL-TSGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD-IADRYRIN   77 (108)
T ss_pred             EEc-CHhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH-HHHhCCCC
Confidence            344 567899988    678999999999999999999999999998762      248999999999988 99999999


Q ss_pred             ccccC
Q 031285          158 VSLMI  162 (162)
Q Consensus       158 ~~Pti  162 (162)
                      ++||+
T Consensus        78 ~~Ptl   82 (108)
T cd02996          78 KYPTL   82 (108)
T ss_pred             cCCEE
Confidence            99985

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PTZ00051 thioredoxin; Provisional

Probab=99.71  E-value=6.2e-17  Score=110.29  Aligned_cols=74  Identities=22%  Similarity=0.534  Sum_probs=68.2

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++.+.+.++|.+.+    +.+++++|+||++||++|+.+.|.++++++++ +++.|+.+|++++.+ ++++|+|.++|++
T Consensus         2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~   75 (98)
T PTZ00051          2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEY-TKMVFVKVDVDELSE-VAEKENITSMPTF   75 (98)
T ss_pred             eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc-CCcEEEEEECcchHH-HHHHCCCceeeEE
Confidence            45677888999988    78999999999999999999999999999998 679999999999988 9999999999985

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.70  E-value=5.8e-17  Score=112.35  Aligned_cols=71  Identities=24%  Similarity=0.471  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC--ChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA--VPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+.   +.+++++|+|||+||++|+.+.|.++++++++.+.+.|+.+|++.  +.+ ++++|+|+++|++
T Consensus         6 ~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~-~~~~~~i~~~Pt~   78 (109)
T cd03002           6 TPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKP-LCGKYGVQGFPTL   78 (109)
T ss_pred             chhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHH-HHHHcCCCcCCEE
Confidence            4568888884   568889999999999999999999999999997779999999998  777 9999999999985

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.70  E-value=6.7e-17  Score=110.18  Aligned_cols=71  Identities=32%  Similarity=0.664  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+.   +.++++||+||++||++|+.+.|.|+++++++++++.|+.||++.+.+ ++++|+|.++|++
T Consensus         5 t~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~   75 (103)
T PF00085_consen    5 TDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE-LCKKYGVKSVPTI   75 (103)
T ss_dssp             STTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH-HHHHTTCSSSSEE
T ss_pred             CHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch-hhhccCCCCCCEE
Confidence            5578999992   349999999999999999999999999999996699999999999988 9999999999985

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.69  E-value=5.1e-17  Score=114.17  Aligned_cols=70  Identities=16%  Similarity=0.197  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCC--ChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASW--CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~W--C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+|++.+    +.+.++||+||++|  |++|+.+.|.|++++++|++.+.|+++|++++++ ++.+|+|+++||+
T Consensus        16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~-la~~f~V~sIPTl   87 (111)
T cd02965          16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA-LAARFGVLRTPAL   87 (111)
T ss_pred             ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH-HHHHcCCCcCCEE
Confidence            557899888    78999999999997  9999999999999999997779999999999998 9999999999985

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.69  E-value=1.6e-16  Score=117.66  Aligned_cols=77  Identities=14%  Similarity=0.424  Sum_probs=66.5

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCcc--
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMV--  158 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~I~~--  158 (162)
                      .+..+ +.++|++.+..  +.+++++|+|||+||++|+.+.|.++++++++++ +++|++||++++++ ++++|+|.+  
T Consensus        29 ~v~~l-~~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-la~~~~V~~~~  104 (152)
T cd02962          29 HIKYF-TPKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-VAEKFRVSTSP  104 (152)
T ss_pred             ccEEc-CHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-HHHHcCceecC
Confidence            34445 45789988843  4578999999999999999999999999999953 59999999999998 999999998  


Q ss_pred             ----cccC
Q 031285          159 ----SLMI  162 (162)
Q Consensus       159 ----~Pti  162 (162)
                          +||+
T Consensus       105 ~v~~~PT~  112 (152)
T cd02962         105 LSKQLPTI  112 (152)
T ss_pred             CcCCCCEE
Confidence                9985

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=3.2e-17  Score=128.19  Aligned_cols=77  Identities=30%  Similarity=0.549  Sum_probs=71.5

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .++.|.+..+|+..+..  ..++.|+|+|+|+|||||+++.|.|..|+.+| ++..|++||+|++.. .|..+||..+||
T Consensus         2 ~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-p~aVFlkVdVd~c~~-taa~~gV~amPT   77 (288)
T KOG0908|consen    2 PVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-PGAVFLKVDVDECRG-TAATNGVNAMPT   77 (288)
T ss_pred             CeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhC-cccEEEEEeHHHhhc-hhhhcCcccCce
Confidence            46788899999999954  67789999999999999999999999999999 899999999999999 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        78 F   78 (288)
T KOG0908|consen   78 F   78 (288)
T ss_pred             E
Confidence            4

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.68  E-value=1.8e-16  Score=107.63  Aligned_cols=72  Identities=17%  Similarity=0.474  Sum_probs=64.4

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+..  ..+++++|+||++||++|+.+.|.|+++++++.+.+.++++|.++.++ ++++|+|.++||+
T Consensus         1 s~~~~~~~~~~--~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~-~~~~~~i~~~Pt~   72 (97)
T cd02984           1 SEEEFEELLKS--DASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE-ISEKFEITAVPTF   72 (97)
T ss_pred             CHHHHHHHHhh--CCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH-HHHhcCCccccEE
Confidence            35678888854  236999999999999999999999999999975789999999999988 9999999999985

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.68  E-value=1.6e-16  Score=109.00  Aligned_cols=72  Identities=28%  Similarity=0.461  Sum_probs=61.9

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCccccc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      +..+ +.++|++.+    + +. ++|+|||+||++|+.+.|.|+++++.+++ ++.++++|++.+++ ++++|+|.++||
T Consensus         3 v~~l-~~~~f~~~~----~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~-~~~~~~i~~~Pt   74 (101)
T cd02994           3 VVEL-TDSNWTLVL----E-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG-LSGRFFVTALPT   74 (101)
T ss_pred             eEEc-ChhhHHHHh----C-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh-HHHHcCCcccCE
Confidence            3444 467899877    3 33 78999999999999999999999998853 69999999999988 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        75 ~   75 (101)
T cd02994          75 I   75 (101)
T ss_pred             E
Confidence            5

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.68  E-value=2.2e-16  Score=109.85  Aligned_cols=75  Identities=19%  Similarity=0.516  Sum_probs=66.0

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++.+++ ++|++.+.   +.+++++|+||++||++|+.+.|.|+++++++.+++.++++|++.++. ++++|+|+++|++
T Consensus         5 v~~~~~-~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~   79 (109)
T PRK09381          5 IIHLTD-DSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPTL   79 (109)
T ss_pred             ceeeCh-hhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh-HHHhCCCCcCCEE
Confidence            455533 67886652   678999999999999999999999999999998789999999999988 9999999999985

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.67  E-value=1.8e-16  Score=120.03  Aligned_cols=79  Identities=20%  Similarity=0.229  Sum_probs=68.9

Q ss_pred             CcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccc
Q 031285           80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        80 ~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      ...+.++++.++|.+.+... ..+.+|||+||++||++|+.+.|.|++|+++| +.++|++||++.. + ++++|+|..+
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-~~vkF~kVd~d~~-~-l~~~f~v~~v  136 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-PAVKFCKIRASAT-G-ASDEFDTDAL  136 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-CCeEEEEEeccch-h-hHHhCCCCCC
Confidence            44677888878999888532 23469999999999999999999999999999 7899999999987 6 9999999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      ||+
T Consensus       137 PTl  139 (175)
T cd02987         137 PAL  139 (175)
T ss_pred             CEE
Confidence            985

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.67  E-value=2.2e-16  Score=107.96  Aligned_cols=69  Identities=25%  Similarity=0.464  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC---CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+    ..+ +++|+|||+||++|+.+.|.|+++++++++   ++.++++|++.+.+ ++++|+|+++|++
T Consensus         6 ~~~~f~~~~----~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~   77 (102)
T cd03005           6 TEDNFDHHI----AEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE-LCSEFQVRGYPTL   77 (102)
T ss_pred             CHHHHHHHh----hcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh-hHhhcCCCcCCEE
Confidence            456899998    445 499999999999999999999999999955   69999999999988 9999999999984

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.67  E-value=3.2e-16  Score=107.33  Aligned_cols=71  Identities=25%  Similarity=0.450  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+|++.+.   +.+++++|+||++||++|+.+.|.|+++++++.+.+.|+++|++++.+ ++++|+|+++|++
T Consensus         6 ~~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~i~~~P~~   76 (103)
T cd03001           6 TDSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS-LAQQYGVRGFPTI   76 (103)
T ss_pred             CHHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH-HHHHCCCCccCEE
Confidence            5578888873   456779999999999999999999999999997789999999999988 9999999999985

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.66  E-value=2.5e-16  Score=115.33  Aligned_cols=69  Identities=17%  Similarity=0.357  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh--HHHHHHcCCcccccC
Q 031285           89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP--HKLVARAGVMVSLMI  162 (162)
Q Consensus        89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~--~~la~~~~I~~~Pti  162 (162)
                      ...|++.+    ..++++||+|||+||++|+.+.|.|+++++++++++.|+.||++...  + ++++|+|.++|++
T Consensus        10 ~~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~-~~~~~~V~~iPt~   80 (142)
T cd02950          10 STPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLP-EIDRYRVDGIPHF   80 (142)
T ss_pred             cCCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHH-HHHHcCCCCCCEE
Confidence            34577777    78999999999999999999999999999999777899999998653  5 8999999999985

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.65  E-value=4.9e-16  Score=110.66  Aligned_cols=74  Identities=14%  Similarity=0.315  Sum_probs=64.9

Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEEEec-------CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC-------hHHHH
Q 031285           86 IGSESQFDRVIAEAQQLDESVIIVWMA-------SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV-------PHKLV  151 (162)
Q Consensus        86 i~~~~~f~~~l~~~~~~~~~vlV~F~a-------~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-------~~~la  151 (162)
                      +.+.++|.+.+..  .++++++|+|||       +||++|+.+.|.++++++++++++.|++||++..       .+ ++
T Consensus         6 ~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~-~~   82 (119)
T cd02952           6 VRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNP-FR   82 (119)
T ss_pred             ccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchh-hH
Confidence            4577889999853  458999999999       9999999999999999999966899999999864       46 99


Q ss_pred             HHcCCc-ccccC
Q 031285          152 ARAGVM-VSLMI  162 (162)
Q Consensus       152 ~~~~I~-~~Pti  162 (162)
                      .+++|. ++||+
T Consensus        83 ~~~~I~~~iPT~   94 (119)
T cd02952          83 TDPKLTTGVPTL   94 (119)
T ss_pred             hccCcccCCCEE
Confidence            999999 99985

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.64  E-value=7.1e-16  Score=106.66  Aligned_cols=67  Identities=22%  Similarity=0.458  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++|++.     .++++++|.|||+||++|+.+.|.|++++++++   ..+.++++|++..++ ++++|+|.++|++
T Consensus         7 ~~~~~~-----~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~I~~~Pt~   76 (104)
T cd03000           7 DSFKDV-----RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS-IASEFGVRGYPTI   76 (104)
T ss_pred             hhhhhh-----ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh-HHhhcCCccccEE
Confidence            566664     347799999999999999999999999999983   349999999999988 9999999999985

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.64  E-value=1.1e-15  Score=106.70  Aligned_cols=73  Identities=15%  Similarity=0.329  Sum_probs=62.1

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCC-ChHHHHH-HcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA-VPHKLVA-RAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-~~~~la~-~~~I~~~Pti  162 (162)
                      +.++|++++... .++++++|+||++||++|+.+.|.|+++++++++ ++.++.||++. ... ++. .++|+.+||+
T Consensus         7 ~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~-~~~~~~~v~~~Pti   82 (109)
T cd02993           7 SRAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQRE-FAKEELQLKSFPTI   82 (109)
T ss_pred             cHHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchh-hHHhhcCCCcCCEE
Confidence            456888887431 5689999999999999999999999999999965 59999999998 455 776 5999999985

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.64  E-value=6e-16  Score=106.86  Aligned_cols=68  Identities=16%  Similarity=0.323  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCC----hHHHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAV----PHKLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~----~~~la~~~~I~~~Pti  162 (162)
                      +.|.+.+    +.+++++|+||++||++|+.+.|.+   +++++.+++++.++.||++.+    .+ ++++|+|.++||+
T Consensus         2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~-~~~~~~i~~~Pti   76 (104)
T cd02953           2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITA-LLKRFGVFGPPTY   76 (104)
T ss_pred             HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHH-HHHHcCCCCCCEE
Confidence            4567777    7899999999999999999999988   688888866899999999873    45 9999999999985

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.64  E-value=1e-15  Score=104.82  Aligned_cols=70  Identities=20%  Similarity=0.426  Sum_probs=62.4

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCC--ChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNA--VPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~--~~~~la~~~~I~~~Pti  162 (162)
                      +..+|++.+    +++++++|+|||+||++|+.+.|.++++++.++  +.+.++++|++.  +.. ++++++|+++|++
T Consensus         6 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~i~~~Pt~   79 (104)
T cd02997           6 TDEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA-LKEEYNVKGFPTF   79 (104)
T ss_pred             chHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH-HHHhCCCccccEE
Confidence            345888888    667899999999999999999999999999985  568999999998  777 9999999999985

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.63  E-value=1.4e-15  Score=103.63  Aligned_cols=70  Identities=31%  Similarity=0.559  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+    .++++++|+||++||++|+.+.|.|+++++.+++  ++.++.+|++.+.+ ++++|+|.++|++
T Consensus         2 ~~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~P~~   73 (102)
T TIGR01126         2 TASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD-LASRFGVSGFPTI   73 (102)
T ss_pred             chhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH-HHHhCCCCcCCEE
Confidence            346788888    6899999999999999999999999999999955  69999999999999 9999999999974

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.62  E-value=9.9e-16  Score=120.02  Aligned_cols=78  Identities=17%  Similarity=0.397  Sum_probs=67.2

Q ss_pred             ceecCCHHHHHHHHHHHh-cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           83 LTPIGSESQFDRVIAEAQ-QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~-~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      +..+ +.++|++.+.... ..+++++|+|||+||++|+.+.|.|+++++++++.+.|+++|++++++ ++++|+|+++||
T Consensus        32 Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~-l~~~~~I~~~PT  109 (224)
T PTZ00443         32 LVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALN-LAKRFAIKGYPT  109 (224)
T ss_pred             cEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH-HHHHcCCCcCCE
Confidence            4444 5679999884311 136899999999999999999999999999997789999999999988 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus       110 l  110 (224)
T PTZ00443        110 L  110 (224)
T ss_pred             E
Confidence            5

>TIGR01068 thioredoxin thioredoxin

Probab=99.60  E-value=4.1e-15  Score=100.80  Aligned_cols=70  Identities=30%  Similarity=0.689  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .++|.+.+.   ..+++++|+||++||++|+.+.|.++++++++.+++.|+++|++.+.. ++++|+|..+|++
T Consensus         3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~P~~   72 (101)
T TIGR01068         3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD-IAAKYGIRSIPTL   72 (101)
T ss_pred             HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH-HHHHcCCCcCCEE
Confidence            467888773   457799999999999999999999999999996679999999999988 9999999999984

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.60  E-value=3.4e-15  Score=102.19  Aligned_cols=71  Identities=30%  Similarity=0.549  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCC-ChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNA-VPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~-~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+.   +.+++++|+||++||++|+.+.|.+++++++++  +.+.++++|++. +++ ++++|+|.++|++
T Consensus         6 ~~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~i~~~P~~   79 (105)
T cd02998           6 TDSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD-LAKKYGVSGFPTL   79 (105)
T ss_pred             chhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh-hHHhCCCCCcCEE
Confidence            3467888772   456799999999999999999999999999985  469999999999 888 9999999999985

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.60  E-value=5e-15  Score=101.23  Aligned_cols=67  Identities=19%  Similarity=0.503  Sum_probs=60.9

Q ss_pred             HHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           92 FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        92 f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++..+.   +.+++++|+||++||++|+.+.|.++++++++++++.++++|++++++ ++++++|.++|++
T Consensus         5 ~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~-l~~~~~v~~vPt~   71 (97)
T cd02949           5 LRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE-IAEAAGIMGTPTV   71 (97)
T ss_pred             HHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH-HHHHCCCeeccEE
Confidence            455553   689999999999999999999999999999997789999999999998 9999999999985

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.60  E-value=3.7e-15  Score=105.23  Aligned_cols=71  Identities=25%  Similarity=0.438  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCC--ChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNA--VPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~--~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+.   ..+++++|+|||+||++|+.+.|.|++++++++   +.+.|+++|++.  +.+ ++++|+|+++|++
T Consensus         7 ~~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~-~~~~~~i~~~Pt~   82 (114)
T cd02992           7 DAASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVA-LCRDFGVTGYPTL   82 (114)
T ss_pred             CHHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHH-HHHhCCCCCCCEE
Confidence            5678999884   456899999999999999999999999999873   348999999754  456 9999999999985

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.59  E-value=3.9e-15  Score=105.01  Aligned_cols=60  Identities=17%  Similarity=0.167  Sum_probs=56.4

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .++..++|+||++||++|+.+.|.++++++++ +++.|.++|++++++ ++++|+|+++||+
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~-l~~~~~v~~vPt~   79 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKE-KAEKYGVERVPTT   79 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHH-HHHHcCCCcCCEE
Confidence            66788999999999999999999999999998 789999999999988 9999999999985

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.59  E-value=4.6e-15  Score=101.47  Aligned_cols=70  Identities=26%  Similarity=0.411  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+.   +.+++++|+||++||++|+.+.|.++++++.+++  .+.++++|++.+ + ++..+++.++|++
T Consensus         6 ~~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~-~~~~~~~~~~Pt~   77 (104)
T cd02995           6 VGKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-D-VPSEFVVDGFPTI   77 (104)
T ss_pred             chhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-h-hhhhccCCCCCEE
Confidence            4568888883   5578999999999999999999999999999854  599999999987 5 7899999999985

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.59  E-value=6.2e-15  Score=99.19  Aligned_cols=70  Identities=29%  Similarity=0.534  Sum_probs=63.8

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHh--CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+|.+.+    .++++++|+||++||++|+.+.|.++++++.+  .+.+.|+.+|++.+.. ++++|+|.++|++
T Consensus         4 ~~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~i~~~Pt~   75 (101)
T cd02961           4 TDDNFDELV----KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND-LCSEYGVRGYPTI   75 (101)
T ss_pred             cHHHHHHHH----hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH-HHHhCCCCCCCEE
Confidence            446888888    66779999999999999999999999999999  5789999999999888 9999999999985

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.55  E-value=1e-14  Score=103.60  Aligned_cols=72  Identities=18%  Similarity=0.243  Sum_probs=57.8

Q ss_pred             HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcc--cccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV--SLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~--~Pti  162 (162)
                      ++++.+..++.++++++|+|||+||++|+.+.|.+.+..+.+.....|+.||++...+...++|++.+  +||+
T Consensus         7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~   80 (117)
T cd02959           7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRI   80 (117)
T ss_pred             eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceE
Confidence            36666666668999999999999999999999999998776544456777787776543678999987  9985

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.54  E-value=1.9e-14  Score=102.52  Aligned_cols=67  Identities=10%  Similarity=0.197  Sum_probs=56.2

Q ss_pred             HHHHHHHHHhcCC-CeEEEEEecCCChhhhhhhHhHH---HHHHHhCCCeEEEEEECCCC-------------hHHHHHH
Q 031285           91 QFDRVIAEAQQLD-ESVIIVWMASWCRKCIYLKPKLE---KLAADYHPRLRFYNVDVNAV-------------PHKLVAR  153 (162)
Q Consensus        91 ~f~~~l~~~~~~~-~~vlV~F~a~WC~~C~~~~p~l~---~l~~~~~~~v~~~~vd~d~~-------------~~~la~~  153 (162)
                      .+++.+    +.+ ++++|+|||+||++|+.++|.+.   ++.+.+.+++.+++||++..             .+ ++.+
T Consensus         5 ~~~~a~----~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~-l~~~   79 (125)
T cd02951           5 DLAEAA----ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKE-LARK   79 (125)
T ss_pred             HHHHHH----HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHH-HHHH
Confidence            444455    778 99999999999999999999885   67777766799999999875             45 9999


Q ss_pred             cCCcccccC
Q 031285          154 AGVMVSLMI  162 (162)
Q Consensus       154 ~~I~~~Pti  162 (162)
                      |+|.++||+
T Consensus        80 ~~v~~~Pt~   88 (125)
T cd02951          80 YRVRFTPTV   88 (125)
T ss_pred             cCCccccEE
Confidence            999999985

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.51  E-value=3.7e-14  Score=121.18  Aligned_cols=74  Identities=14%  Similarity=0.262  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHH-HHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLV-ARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la-~~~~I~~~Pti  162 (162)
                      +.++|++.+.. ++.++++||+|||+||++|+.+.|.|++++++|++ ++.|++||+|.+...++ ++|+|+++|||
T Consensus       357 ~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTi  432 (463)
T TIGR00424       357 SRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTI  432 (463)
T ss_pred             CHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceE
Confidence            55789998842 16899999999999999999999999999999965 49999999997642244 78999999986

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.48  E-value=1.2e-13  Score=117.98  Aligned_cols=73  Identities=15%  Similarity=0.276  Sum_probs=63.4

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC-CChHHHHH-HcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN-AVPHKLVA-RAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d-~~~~~la~-~~~I~~~Pti  162 (162)
                      +.++|++++... +.++++||+|||+||++|+.+.|.|++++++|.+ ++.|+++|++ .+.+ ++. +|+|+++|||
T Consensus       351 t~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~-la~~~~~I~~~PTi  426 (457)
T PLN02309        351 SRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE-FAKQELQLGSFPTI  426 (457)
T ss_pred             CHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH-HHHhhCCCceeeEE
Confidence            667888887432 6899999999999999999999999999999954 5999999999 6666 786 6999999986

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.48  E-value=1e-13  Score=106.38  Aligned_cols=76  Identities=20%  Similarity=0.217  Sum_probs=62.3

Q ss_pred             CcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccc
Q 031285           80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        80 ~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      ...+.++ +..+|...+..+ ..+.+|||+||++||++|+.+.|.|++|+++| +.++|++||++.    .+.+|+|..+
T Consensus        81 ~G~v~ei-s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~-~~vkFvkI~ad~----~~~~~~i~~l  153 (192)
T cd02988          81 FGEVYEI-SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKF-PDTKFVKIISTQ----CIPNYPDKNL  153 (192)
T ss_pred             CCeEEEe-CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHC-CCCEEEEEEhHH----hHhhCCCCCC
Confidence            3456667 456777666432 33569999999999999999999999999999 789999999974    3689999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      ||+
T Consensus       154 PTl  156 (192)
T cd02988         154 PTI  156 (192)
T ss_pred             CEE
Confidence            985

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=4.1e-14  Score=120.93  Aligned_cols=70  Identities=24%  Similarity=0.464  Sum_probs=65.1

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+    ..+..++|.|||||||+|++++|.+++.++.+.   ..+.+++||++.+.+ +|.+|+|+++||+
T Consensus        31 t~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~-~~~~y~v~gyPTl  103 (493)
T KOG0190|consen   31 TKDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESD-LASKYEVRGYPTL  103 (493)
T ss_pred             ecccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhh-hHhhhcCCCCCeE
Confidence            668999999    889999999999999999999999999999983   369999999999988 9999999999996

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.47  E-value=1.2e-13  Score=90.85  Aligned_cols=56  Identities=20%  Similarity=0.288  Sum_probs=52.0

Q ss_pred             EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .|..||++||++|+.+.|.++++++++++.+.+++||++++++ ++++|+|.++|++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~vPt~   57 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ-KAMEYGIMAVPAI   57 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH-HHHHcCCccCCEE
Confidence            4678999999999999999999999997679999999999988 9999999999985

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.46  E-value=2e-13  Score=90.00  Aligned_cols=66  Identities=32%  Similarity=0.670  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +|++.+    ..+++++|.||++||++|+.+.+.+++++++ .+++.++.+|++.+.+ ++++|++.++|++
T Consensus         2 ~~~~~~----~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~~~v~~~P~~   67 (93)
T cd02947           2 EFEELI----KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPE-LAEEYGVRSIPTF   67 (93)
T ss_pred             chHHHH----hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChh-HHHhcCcccccEE
Confidence            466677    5569999999999999999999999999998 4889999999999988 9999999999985

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.45  E-value=3e-13  Score=96.74  Aligned_cols=69  Identities=14%  Similarity=0.195  Sum_probs=56.0

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh----------HHHHHHcCC-
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP----------HKLVARAGV-  156 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----------~~la~~~~I-  156 (162)
                      +.++|.+.+    ++++.++|+||++||++|+.+.|.|++++++.  ++.++.||++.+.          .++.++|++ 
T Consensus        12 t~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~   85 (122)
T TIGR01295        12 TVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP   85 (122)
T ss_pred             CHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence            557888888    78999999999999999999999999999984  5778889988543          125567654 


Q ss_pred             ---cccccC
Q 031285          157 ---MVSLMI  162 (162)
Q Consensus       157 ---~~~Pti  162 (162)
                         .++||+
T Consensus        86 ~~i~~~PT~   94 (122)
T TIGR01295        86 TSFMGTPTF   94 (122)
T ss_pred             ccCCCCCEE
Confidence               459985

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.45  E-value=2.7e-13  Score=114.74  Aligned_cols=70  Identities=29%  Similarity=0.557  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|+..+    +++++++|+|||+||++|+.+.|.++++++.+.   +++.|++||++.+.+ ++++|+|.++||+
T Consensus         7 ~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-l~~~~~i~~~Pt~   79 (462)
T TIGR01130         7 TKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD-LAQKYGVSGYPTL   79 (462)
T ss_pred             CHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH-HHHhCCCccccEE
Confidence            567899998    678899999999999999999999999998873   349999999999988 9999999999985

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.43  E-value=6.5e-13  Score=116.70  Aligned_cols=82  Identities=20%  Similarity=0.318  Sum_probs=69.8

Q ss_pred             CcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCCh---HHHHHH
Q 031285           80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP---HKLVAR  153 (162)
Q Consensus        80 ~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~---~~la~~  153 (162)
                      ....+.+.+.+++++.+..+++++|+|+|+|||+||++|+.+.+..   +++.+++ +++.++++|++++.   .+++++
T Consensus       451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l-~~~~~v~vDvt~~~~~~~~l~~~  529 (571)
T PRK00293        451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQAL-ADTVLLQADVTANNAEDVALLKH  529 (571)
T ss_pred             CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHh-cCCEEEEEECCCCChhhHHHHHH
Confidence            3457788899999999987767899999999999999999998875   6788888 57999999998642   238999


Q ss_pred             cCCcccccC
Q 031285          154 AGVMVSLMI  162 (162)
Q Consensus       154 ~~I~~~Pti  162 (162)
                      |+|.++|++
T Consensus       530 ~~v~g~Pt~  538 (571)
T PRK00293        530 YNVLGLPTI  538 (571)
T ss_pred             cCCCCCCEE
Confidence            999999985

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.43  E-value=4.8e-13  Score=98.46  Aligned_cols=46  Identities=15%  Similarity=0.301  Sum_probs=40.1

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--------CeEEEEEECCCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--------RLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--------~v~~~~vd~d~~  146 (162)
                      .+|++++|+|||+||++|+.++|.|+++.+++.+        ++.++.|+.|.+
T Consensus        23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~   76 (146)
T cd03008          23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQS   76 (146)
T ss_pred             hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCC
Confidence            5699999999999999999999999998887632        589999998754

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.42  E-value=4.6e-13  Score=114.40  Aligned_cols=74  Identities=28%  Similarity=0.481  Sum_probs=65.3

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCccc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      +..+ +..+|++.+    .+++.++|+|||+||++|+++.|.++++++.+.   +++.|++||++.+.+ ++++|+|.++
T Consensus        34 v~~l-~~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~-l~~~~~i~~~  107 (477)
T PTZ00102         34 VTVL-TDSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME-LAQEFGVRGY  107 (477)
T ss_pred             cEEc-chhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH-HHHhcCCCcc
Confidence            3344 567899988    678899999999999999999999999998773   469999999999998 9999999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      ||+
T Consensus       108 Pt~  110 (477)
T PTZ00102        108 PTI  110 (477)
T ss_pred             cEE
Confidence            985

>PHA02125 thioredoxin-like protein

Probab=99.42  E-value=2.7e-13  Score=88.75  Aligned_cols=49  Identities=24%  Similarity=0.527  Sum_probs=44.1

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +++|||+||++|+.+.|.|+++.      +.+++||.+.+.+ ++++|+|.++||+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~-l~~~~~v~~~PT~   50 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVE-LTAKHHIRSLPTL   50 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHH-HHHHcCCceeCeE
Confidence            78999999999999999997653      4689999999988 9999999999985

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.42  E-value=3.8e-13  Score=85.70  Aligned_cols=55  Identities=25%  Similarity=0.339  Sum_probs=50.7

Q ss_pred             EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      -++.||++||++|+.+.+.++++++++ +++.+..+|++++++ +++++||.++|+|
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~-l~~~~~i~~vPti   56 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPD-LADEYGVMSVPAI   56 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHh-HHHHcCCcccCEE
Confidence            367899999999999999999998876 789999999999988 9999999999985

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.42  E-value=4.9e-13  Score=91.59  Aligned_cols=60  Identities=13%  Similarity=0.223  Sum_probs=56.9

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCc--ccccC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM--VSLMI  162 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~--~~Pti  162 (162)
                      .++++++.||++||++|..+.|.+++++++|.+++.|+.||++++++ +++.|||.  ++|++
T Consensus        11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~-~~~~~~i~~~~~P~~   72 (103)
T cd02982          11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR-HLEYFGLKEEDLPVI   72 (103)
T ss_pred             cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH-HHHHcCCChhhCCEE
Confidence            47899999999999999999999999999998889999999999988 99999999  99975

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=2.5e-13  Score=116.13  Aligned_cols=68  Identities=25%  Similarity=0.433  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ..+|++++.   +.++-|+|.|||||||||+++.|.+++|++.|++  ++.++++|++.|.-   ...+++++|||
T Consensus       373 gknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~---~~~~~~~fPTI  442 (493)
T KOG0190|consen  373 GKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV---PSLKVDGFPTI  442 (493)
T ss_pred             ecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC---ccccccccceE
Confidence            368998885   7899999999999999999999999999999953  69999999999843   55677889986

>PTZ00102 disulphide isomerase; Provisional

Probab=99.38  E-value=6.5e-13  Score=113.47  Aligned_cols=75  Identities=17%  Similarity=0.361  Sum_probs=64.8

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCChHHHHHHcCCcccc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMVSL  160 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~la~~~~I~~~P  160 (162)
                      +..+ ..++|++.+.   +.+++++|+|||+||++|+.+.|.|+++++.+.+  .+.++++|++.+.. .+++++|+++|
T Consensus       359 v~~l-~~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~-~~~~~~v~~~P  433 (477)
T PTZ00102        359 VKVV-VGNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET-PLEEFSWSAFP  433 (477)
T ss_pred             eEEe-cccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc-chhcCCCcccC
Confidence            3444 3478888763   6799999999999999999999999999999843  59999999999988 89999999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      |+
T Consensus       434 t~  435 (477)
T PTZ00102        434 TI  435 (477)
T ss_pred             eE
Confidence            85

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.38  E-value=1.4e-12  Score=93.86  Aligned_cols=62  Identities=19%  Similarity=0.267  Sum_probs=51.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC---CeEEEEEECCCCh------------------------HHHHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVP------------------------HKLVAR  153 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~------------------------~~la~~  153 (162)
                      .+|++++|+||++||++|+.++|.++++++++++   ++.++.|+++...                        ..+++.
T Consensus        15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   94 (132)
T cd02964          15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ   94 (132)
T ss_pred             hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence            4689999999999999999999999999998853   5888888887643                        126677


Q ss_pred             cCCcccccC
Q 031285          154 AGVMVSLMI  162 (162)
Q Consensus       154 ~~I~~~Pti  162 (162)
                      |+|.++|++
T Consensus        95 ~~v~~iPt~  103 (132)
T cd02964          95 FKVEGIPTL  103 (132)
T ss_pred             cCCCCCCEE
Confidence            999999974

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.38  E-value=3.4e-13  Score=108.64  Aligned_cols=70  Identities=17%  Similarity=0.419  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC---CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++++..... .....++|+||||||++|+++.|.|.++.-++++   -+++.++|+...+. +|.+|+|+++|||
T Consensus        32 DLddkFkdn-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~a-iAnefgiqGYPTI  104 (468)
T KOG4277|consen   32 DLDDKFKDN-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPA-IANEFGIQGYPTI  104 (468)
T ss_pred             hhhHHhhhc-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchh-hHhhhccCCCceE
Confidence            344444332 5678899999999999999999999999988733   49999999999999 9999999999997

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.36  E-value=1.3e-12  Score=85.87  Aligned_cols=52  Identities=17%  Similarity=0.225  Sum_probs=45.7

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .|+||++||++|+.+.|.+++++++++.++.+++||   +.+ .+.+|++.++|++
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~-~a~~~~v~~vPti   53 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMN-EILEAGVTATPGV   53 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHH-HHHHcCCCcCCEE
Confidence            378999999999999999999999997778988887   344 5888999999985

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.35  E-value=2.6e-12  Score=92.01  Aligned_cols=62  Identities=16%  Similarity=0.260  Sum_probs=51.6

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCCh-----------------------HHHHHHc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVP-----------------------HKLVARA  154 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~-----------------------~~la~~~  154 (162)
                      ..++++||+||++||++|+.++|.++++.+++.   +++.++.|++|...                       ..++++|
T Consensus        16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (131)
T cd03009          16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF   95 (131)
T ss_pred             hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence            358999999999999999999999999998884   36888888887542                       1277899


Q ss_pred             CCcccccC
Q 031285          155 GVMVSLMI  162 (162)
Q Consensus       155 ~I~~~Pti  162 (162)
                      +|.++|++
T Consensus        96 ~v~~~P~~  103 (131)
T cd03009          96 KIEGIPTL  103 (131)
T ss_pred             CCCCCCEE
Confidence            99999974

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.35  E-value=1.2e-12  Score=91.24  Aligned_cols=59  Identities=12%  Similarity=0.258  Sum_probs=46.5

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCCccccc
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMVSLM  161 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~la~~~~I~~~Pt  161 (162)
                      ++++++|+||++||++|+.+.|.++++.+++++++.++.+. +...   ..+++++++..+|+
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~   81 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPY   81 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcE
Confidence            48999999999999999999999999999886677777663 2221   12677788876775

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.33  E-value=2.1e-12  Score=91.47  Aligned_cols=66  Identities=14%  Similarity=0.070  Sum_probs=51.9

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEec--CCCh---hhhhhhHhHHHHHHHhCCCeEEEEEECC-----CChHHHHHHcCCc
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMA--SWCR---KCIYLKPKLEKLAADYHPRLRFYNVDVN-----AVPHKLVARAGVM  157 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a--~WC~---~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----~~~~~la~~~~I~  157 (162)
                      +..+|++.+    .+++.+||.|||  |||+   +|+.+.|.+.+.+    +.+.+++||++     ++.+ ||++|+|+
T Consensus         7 ~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa----~~v~lakVd~~d~~~~~~~~-L~~~y~I~   77 (116)
T cd03007           7 DTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT----DDLLVAEVGIKDYGEKLNME-LGERYKLD   77 (116)
T ss_pred             ChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc----CceEEEEEecccccchhhHH-HHHHhCCC
Confidence            568999999    788999999999  8888   5555544444333    35899999994     4556 99999999


Q ss_pred             --ccccC
Q 031285          158 --VSLMI  162 (162)
Q Consensus       158 --~~Pti  162 (162)
                        ++|||
T Consensus        78 ~~gyPTl   84 (116)
T cd03007          78 KESYPVI   84 (116)
T ss_pred             cCCCCEE
Confidence              99986

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PTZ00062 glutaredoxin; Provisional

Probab=99.33  E-value=3.1e-12  Score=99.00  Aligned_cols=63  Identities=17%  Similarity=0.185  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           87 GSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        87 ~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .+.++|.+.+.   ...+.+|++|||+||++|+.+.|.+++|+++| +++.|++||.+         |+|.++|++
T Consensus         4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d---------~~V~~vPtf   66 (204)
T PTZ00062          4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA---------DANNEYGVF   66 (204)
T ss_pred             CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc---------cCcccceEE
Confidence            46678888882   23377899999999999999999999999999 88999999988         899999974

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.30  E-value=1.1e-11  Score=88.90  Aligned_cols=63  Identities=19%  Similarity=0.193  Sum_probs=51.8

Q ss_pred             HhcCCCeEEEEEecCCChhhhhhhHh-H--HHHHHHhCCCeEEEEEECCCChHHHHHH--------cCCcccccC
Q 031285           99 AQQLDESVIIVWMASWCRKCIYLKPK-L--EKLAADYHPRLRFYNVDVNAVPHKLVAR--------AGVMVSLMI  162 (162)
Q Consensus        99 ~~~~~~~vlV~F~a~WC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~d~~~~~la~~--------~~I~~~Pti  162 (162)
                      +++.+|+++|+|+|+||++|+.+.+. |  .++.+.+..++.++++|+++.++ ++++        ||+.++|++
T Consensus        11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~-~~~~~~~~~~~~~~~~G~Pt~   84 (124)
T cd02955          11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPD-VDKIYMNAAQAMTGQGGWPLN   84 (124)
T ss_pred             HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcH-HHHHHHHHHHHhcCCCCCCEE
Confidence            34899999999999999999999873 3  36777765689999999999877 6553        589999985

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.29  E-value=8.2e-12  Score=108.19  Aligned_cols=61  Identities=23%  Similarity=0.321  Sum_probs=51.1

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEEC----------------------------CCChHHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDV----------------------------NAVPHKLV  151 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~----------------------------d~~~~~la  151 (162)
                      +++++|||+|||+||++|+.++|.|++++++++ +++.|+.|+.                            |.+.. ++
T Consensus        54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~-la  132 (521)
T PRK14018         54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGT-LA  132 (521)
T ss_pred             cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHH-HH
Confidence            579999999999999999999999999999985 4577776643                            33445 88


Q ss_pred             HHcCCcccccC
Q 031285          152 ARAGVMVSLMI  162 (162)
Q Consensus       152 ~~~~I~~~Pti  162 (162)
                      +.|+|.++|+.
T Consensus       133 k~fgV~giPTt  143 (521)
T PRK14018        133 QSLNISVYPSW  143 (521)
T ss_pred             HHcCCCCcCeE
Confidence            99999999973

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.28  E-value=1.3e-11  Score=87.78  Aligned_cols=58  Identities=22%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC-----------------------CChHHHHHHcCCc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-----------------------AVPHKLVARAGVM  157 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----------------------~~~~~la~~~~I~  157 (162)
                      .++++++|+||++||++|+.+.|.++++.+++  ++.++.|+.+                       .... +++.|++.
T Consensus        23 ~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~v~   99 (127)
T cd03010          23 LKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGR-VGIDLGVY   99 (127)
T ss_pred             cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcch-HHHhcCCC
Confidence            46899999999999999999999999999886  3888877743                       3334 67778888


Q ss_pred             cccc
Q 031285          158 VSLM  161 (162)
Q Consensus       158 ~~Pt  161 (162)
                      ++|+
T Consensus       100 ~~P~  103 (127)
T cd03010         100 GVPE  103 (127)
T ss_pred             CCCe
Confidence            8884

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.28  E-value=7.9e-12  Score=92.72  Aligned_cols=58  Identities=17%  Similarity=0.423  Sum_probs=45.6

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC------------hHHHH-HHc---CCccccc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV------------PHKLV-ARA---GVMVSLM  161 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~------------~~~la-~~~---~I~~~Pt  161 (162)
                      ..++..+|+|||+||++|++++|.+++++++|  ++.++.|++|..            .+ .. ..|   ++.++|+
T Consensus        48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~--~~~Vi~Vs~d~~~~~~fp~~~~~~~~-~~~~~~~~~~v~~iPT  121 (153)
T TIGR02738        48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF--GLPVYAFSLDGQGLTGFPDPLPATPE-VMQTFFPNPRPVVTPA  121 (153)
T ss_pred             hcCCCEEEEEECCCChhHHHHHHHHHHHHHHc--CCcEEEEEeCCCcccccccccCCchH-HHHHHhccCCCCCCCe
Confidence            34666799999999999999999999999998  466777777643            23 33 345   7899997

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>TIGR02740 TraF-like TraF-like protein

Probab=99.28  E-value=1.3e-11  Score=99.44  Aligned_cols=59  Identities=15%  Similarity=0.240  Sum_probs=51.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC-----------hHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV-----------PHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-----------~~~la~~~~I~~~Pti  162 (162)
                      ..++++||+||++||++|+.++|.|++++++|+  +.++.|++|..           .. ++++|||.++|++
T Consensus       164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~-la~~~gV~~vPtl  233 (271)
T TIGR02740       164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAG-QAQQLKIRTVPAV  233 (271)
T ss_pred             hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHH-HHHHcCCCcCCeE
Confidence            568999999999999999999999999999993  67777777653           35 8999999999985

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.26  E-value=2.1e-11  Score=94.86  Aligned_cols=59  Identities=24%  Similarity=0.286  Sum_probs=52.7

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .+..+|+.||++||++|+.+.|.+++++.++ +++.+.++|.+..++ ++++|+|.++||+
T Consensus       132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~-~~~~~~V~~vPtl  190 (215)
T TIGR02187       132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPD-LAEKYGVMSVPKI  190 (215)
T ss_pred             CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHH-HHHHhCCccCCEE
Confidence            3444566699999999999999999999986 789999999999999 9999999999985

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.25  E-value=2.7e-11  Score=81.86  Aligned_cols=44  Identities=30%  Similarity=0.606  Sum_probs=38.9

Q ss_pred             CCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCCC
Q 031285          103 DESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAV  146 (162)
Q Consensus       103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~  146 (162)
                      ||+++|+|||+||++|+.+.|.+.++.++|+  +++.|+.|+.|..
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~   46 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED   46 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence            6899999999999999999999999999996  6899999998754

...

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.23  E-value=1.2e-11  Score=104.78  Aligned_cols=69  Identities=25%  Similarity=0.438  Sum_probs=60.1

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC---CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ...+|.+.+.   +.++.++|+|||+||++|+.+.|.++++++.+.+   ++.|+++|++.+.  +.. ++|+++|++
T Consensus       352 ~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--~~~-~~i~~~Pt~  423 (462)
T TIGR01130       352 VGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--VPP-FEVEGFPTI  423 (462)
T ss_pred             eCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--cCC-CCccccCEE
Confidence            4567888873   6799999999999999999999999999999965   6999999999874  344 999999985

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.21  E-value=4.9e-11  Score=80.76  Aligned_cols=59  Identities=17%  Similarity=0.207  Sum_probs=54.5

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .+..-+..|+++||++|....+.++++++++ +++.+..+|+++.++ ++++|+|.++|++
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~~e-~a~~~~V~~vPt~   69 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALFQD-EVEERGIMSVPAI   69 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhCHH-HHHHcCCccCCEE
Confidence            5666788899999999999999999999998 789999999999998 9999999999985

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=2.2e-11  Score=102.17  Aligned_cols=61  Identities=23%  Similarity=0.451  Sum_probs=58.6

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ..+++++|+||++||++|+.+.|.+++++..+++.+.++.||++.+.+ ++++|+|.++|||
T Consensus        45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~-~~~~y~i~gfPtl  105 (383)
T KOG0191|consen   45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKD-LCEKYGIQGFPTL  105 (383)
T ss_pred             ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHH-HHHhcCCccCcEE
Confidence            789999999999999999999999999999997789999999999999 9999999999986

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.18  E-value=2.8e-11  Score=80.30  Aligned_cols=70  Identities=17%  Similarity=0.340  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++++.+..|++.+++++|+|+++||++|+.+...+   .++.+.+..++.++++|.+.... .. ++...++|++
T Consensus         5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~-~~-~~~~~~~P~~   77 (82)
T PF13899_consen    5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDP-NA-QFDRQGYPTF   77 (82)
T ss_dssp             SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHH-HH-HHHHCSSSEE
T ss_pred             hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCCh-hH-HhCCccCCEE
Confidence            57777777889999999999999999999998777   45666455679999999987765 22 2222568864

...

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.15  E-value=6.4e-11  Score=95.44  Aligned_cols=68  Identities=22%  Similarity=0.435  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHh-----CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY-----HPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-----~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++++.++    ..+..|+|.|||+||+..+.++|.|++.+..+     ++++.+++||++++.+ |+.+|.|..+||+
T Consensus         4 ~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~-ia~ky~I~KyPTl   76 (375)
T KOG0912|consen    4 ENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDD-IADKYHINKYPTL   76 (375)
T ss_pred             ccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhH-HhhhhccccCcee
Confidence            5678888    77999999999999999999999999888766     2579999999999988 9999999999996

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.14  E-value=1.7e-10  Score=78.61  Aligned_cols=61  Identities=28%  Similarity=0.427  Sum_probs=53.4

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC-----------------------hHHHHHHcCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV-----------------------PHKLVARAGV  156 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~-----------------------~~~la~~~~I  156 (162)
                      ..+++++|+||++||++|+...+.+.++.++++ +++.++.|+++..                       .. +++.|++
T Consensus        17 ~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   95 (116)
T cd02966          17 LKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGE-LAKAYGV   95 (116)
T ss_pred             cCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcch-HHHhcCc
Confidence            348999999999999999999999999999995 5799999999985                       45 7888888


Q ss_pred             cccccC
Q 031285          157 MVSLMI  162 (162)
Q Consensus       157 ~~~Pti  162 (162)
                      .++|++
T Consensus        96 ~~~P~~  101 (116)
T cd02966          96 RGLPTT  101 (116)
T ss_pred             CccceE
Confidence            888863

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.13  E-value=1.8e-10  Score=89.52  Aligned_cols=59  Identities=22%  Similarity=0.319  Sum_probs=49.2

Q ss_pred             CCCeEEEEEec---CCChhhhhhhHhHHHHHHHhCCC--eEEEEEECCCChHHHHHHcCCcccccC
Q 031285          102 LDESVIIVWMA---SWCRKCIYLKPKLEKLAADYHPR--LRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       102 ~~~~vlV~F~a---~WC~~C~~~~p~l~~l~~~~~~~--v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .+...++.|++   +||++|+.+.|.++++++++ ++  +.++.+|.+++++ ++++|+|+++||+
T Consensus        18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~-~~~~i~~v~vd~~~~~~-l~~~~~V~~~Pt~   81 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVS-PKLKLEIYDFDTPEDKE-EAEKYGVERVPTT   81 (215)
T ss_pred             CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhC-CCceEEEEecCCcccHH-HHHHcCCCccCEE
Confidence            34445666888   99999999999999999999 55  4566667778888 9999999999985

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.13  E-value=2.1e-10  Score=87.27  Aligned_cols=44  Identities=20%  Similarity=0.407  Sum_probs=37.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP  147 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~  147 (162)
                      .++++++|+|||+||++|+.++|.++++.+   .++.++.|+.++..
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~---~~~~vi~v~~~~~~  109 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMNYKDDR  109 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHH---cCCEEEEEECCCCH
Confidence            479999999999999999999999999864   36889999876543

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.09  E-value=4.4e-11  Score=83.10  Aligned_cols=63  Identities=21%  Similarity=0.365  Sum_probs=47.7

Q ss_pred             hcCCCeEEEEEecCCChhhhhhhHhHHHH---HHHhCCCeEEEEEECCCCh-------------------HHHHHHcCCc
Q 031285          100 QQLDESVIIVWMASWCRKCIYLKPKLEKL---AADYHPRLRFYNVDVNAVP-------------------HKLVARAGVM  157 (162)
Q Consensus       100 ~~~~~~vlV~F~a~WC~~C~~~~p~l~~l---~~~~~~~v~~~~vd~d~~~-------------------~~la~~~~I~  157 (162)
                      +.++++++++||++||+.|+.+.+.+.+.   ...+.+++.++.++++...                   .+++++|||.
T Consensus         2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~   81 (112)
T PF13098_consen    2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN   81 (112)
T ss_dssp             ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred             CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence            47899999999999999999999998854   4444456899999987542                   2389999999


Q ss_pred             ccccC
Q 031285          158 VSLMI  162 (162)
Q Consensus       158 ~~Pti  162 (162)
                      ++||+
T Consensus        82 gtPt~   86 (112)
T PF13098_consen   82 GTPTI   86 (112)
T ss_dssp             SSSEE
T ss_pred             ccCEE
Confidence            99985

...

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.09  E-value=3.3e-10  Score=80.68  Aligned_cols=42  Identities=21%  Similarity=0.387  Sum_probs=38.0

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEEC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDV  143 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~  143 (162)
                      +++++||+||++||++|+..+|.|+++.++|+ .++.++.|+.
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~   64 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS   64 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence            58999999999999999999999999999995 3588888865

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.09  E-value=2.5e-10  Score=80.40  Aligned_cols=57  Identities=32%  Similarity=0.595  Sum_probs=44.9

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC-----------------------CCChHHHHHHcCCc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV-----------------------NAVPHKLVARAGVM  157 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-----------------------d~~~~~la~~~~I~  157 (162)
                      ..+++++|+||++||++|+.+.|.++++++++    .++.|..                       +.+.+ ++++|+|.
T Consensus        18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~i~   92 (123)
T cd03011          18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADY----PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGV-ISARWGVS   92 (123)
T ss_pred             hCCCEEEEEEECCcChhhhhhChHHHHHHhhC----CEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcH-HHHhCCCC
Confidence            45799999999999999999999999998774    3333332                       23345 88999999


Q ss_pred             ccccC
Q 031285          158 VSLMI  162 (162)
Q Consensus       158 ~~Pti  162 (162)
                      ++|++
T Consensus        93 ~~P~~   97 (123)
T cd03011          93 VTPAI   97 (123)
T ss_pred             cccEE
Confidence            99974

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.08  E-value=2e-10  Score=107.10  Aligned_cols=61  Identities=21%  Similarity=0.277  Sum_probs=50.0

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEEC---C------------------------CChHHHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDV---N------------------------AVPHKLVA  152 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~---d------------------------~~~~~la~  152 (162)
                      .++++|||+|||+||++|+.+.|.|+++.++|++ ++.++.|..   |                        .... +++
T Consensus       418 lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~-~~~  496 (1057)
T PLN02919        418 LKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMY-LWR  496 (1057)
T ss_pred             cCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchH-HHH
Confidence            3699999999999999999999999999999954 488888842   2                        2233 778


Q ss_pred             HcCCcccccC
Q 031285          153 RAGVMVSLMI  162 (162)
Q Consensus       153 ~~~I~~~Pti  162 (162)
                      +|+|.++|++
T Consensus       497 ~~~V~~iPt~  506 (1057)
T PLN02919        497 ELGVSSWPTF  506 (1057)
T ss_pred             hcCCCccceE
Confidence            8999999973

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.06  E-value=5.9e-10  Score=83.82  Aligned_cols=41  Identities=34%  Similarity=0.549  Sum_probs=35.3

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d  144 (162)
                      ..+++++|+||++||++|+.+.|.++++.++   ++.++.|+.+
T Consensus        61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~  101 (173)
T TIGR00385        61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYK  101 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECC
Confidence            4689999999999999999999999988753   4778888764

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.06  E-value=5.2e-10  Score=75.41  Aligned_cols=59  Identities=31%  Similarity=0.550  Sum_probs=52.7

Q ss_pred             CCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC-CChHHHHHHcC--CcccccC
Q 031285          103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-AVPHKLVARAG--VMVSLMI  162 (162)
Q Consensus       103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~la~~~~--I~~~Pti  162 (162)
                      +++++++||++||++|+.+.|.+.++++++...+.++.+|+. ...+ ++..|+  +..+|++
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~   93 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD-LAAEFGVAVRSIPTL   93 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH-HHHHHhhhhccCCeE
Confidence            889999999999999999999999999999557999999997 6777 899998  8887753

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=6.2e-11  Score=102.08  Aligned_cols=71  Identities=21%  Similarity=0.398  Sum_probs=60.1

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCC--ChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNA--VPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~--~~~~la~~~~I~~~Pti  162 (162)
                      +.++|+..+.   .+.+..+|.||++|||+|+++.|.|++++++..   +-+.++.||+-.  |.. +|.+|+|.++|+|
T Consensus        45 d~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~-lCRef~V~~~Ptl  120 (606)
T KOG1731|consen   45 DVDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVK-LCREFSVSGYPTL  120 (606)
T ss_pred             ehhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhh-hHhhcCCCCCcee
Confidence            6688999984   344688999999999999999999999999984   348888999854  334 9999999999986

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.03  E-value=7.8e-10  Score=80.31  Aligned_cols=45  Identities=24%  Similarity=0.490  Sum_probs=39.6

Q ss_pred             CCCeEEEEEecC-CChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          102 LDESVIIVWMAS-WCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       102 ~~~~vlV~F~a~-WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      +|+++||+||++ ||++|+..+|.++++.++|+ .++.++.|..+..
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~   73 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD   73 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC
Confidence            699999999999 99999999999999999974 4589988886544

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.01  E-value=1e-09  Score=81.63  Aligned_cols=60  Identities=18%  Similarity=0.407  Sum_probs=51.3

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCC----------------------hHHHHHHcCCc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAV----------------------PHKLVARAGVM  157 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~----------------------~~~la~~~~I~  157 (162)
                      ..+++++|+||++||++|+...+.+.++.+++++ ++.++.|+.+..                      .+ ++++|+|.
T Consensus        59 ~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~v~  137 (173)
T PRK03147         59 LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQ-VIDAYGVG  137 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcch-HHHHcCCC
Confidence            3589999999999999999999999999999954 489999987643                      33 77889999


Q ss_pred             cccc
Q 031285          158 VSLM  161 (162)
Q Consensus       158 ~~Pt  161 (162)
                      .+|+
T Consensus       138 ~~P~  141 (173)
T PRK03147        138 PLPT  141 (173)
T ss_pred             CcCe
Confidence            8886

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.98  E-value=1.1e-09  Score=84.37  Aligned_cols=44  Identities=16%  Similarity=0.230  Sum_probs=39.7

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d  144 (162)
                      .+|+++||+|||+||++|+..+|.|+++.++|++ ++.++.|+++
T Consensus        37 ~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~   81 (199)
T PTZ00056         37 LKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS   81 (199)
T ss_pred             hCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence            3589999999999999999999999999999954 5999999874

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.98  E-value=1.2e-09  Score=78.81  Aligned_cols=75  Identities=12%  Similarity=0.154  Sum_probs=52.4

Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        86 i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      |....+|++.+..+++++|+++|+|+++||++|+.+...+   .++.+....++..+.++.+....... ..+ .++|++
T Consensus         6 i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPti   83 (130)
T cd02960           6 IIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRI   83 (130)
T ss_pred             ccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeE
Confidence            3344578888888889999999999999999999998765   34555444456777787763321011 233 567874

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.97  E-value=1.4e-09  Score=82.60  Aligned_cols=53  Identities=17%  Similarity=0.426  Sum_probs=43.0

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC------------hHHHHHHcCC--ccccc
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV------------PHKLVARAGV--MVSLM  161 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~------------~~~la~~~~I--~~~Pt  161 (162)
                      +|+||++||++|++++|.+++++++|  ++.++.|++|..            ...+.+.|++  .++|+
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~--g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPt  139 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQY--GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPT  139 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHc--CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCe
Confidence            77899999999999999999999999  478887877643            2226678885  58886

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.95  E-value=2.2e-09  Score=75.31  Aligned_cols=73  Identities=12%  Similarity=0.133  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHh-H--HHHHHHhCCCeEEEEEECCCC-hHHHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPK-L--EKLAADYHPRLRFYNVDVNAV-PHKLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~d~~-~~~la~~~~I~~~Pti  162 (162)
                      .+|++.+..|++++|+++|+|+++||.+|+.+... |  +++.+.+...+.++++|++.. ...++..|++.++|++
T Consensus         4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~   80 (114)
T cd02958           4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI   80 (114)
T ss_pred             CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence            35778888888999999999999999999998754 3  456666655789999999752 2238999999999985

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.93  E-value=2.7e-09  Score=78.49  Aligned_cols=42  Identities=26%  Similarity=0.253  Sum_probs=38.4

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVN  144 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d  144 (162)
                      .|+++||+|||+||+ |+..+|.|+++.++|+ .++.++.|+++
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            589999999999999 9999999999999995 46999999875

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.92  E-value=2.6e-09  Score=81.60  Aligned_cols=40  Identities=15%  Similarity=0.282  Sum_probs=33.1

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEE
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD  142 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd  142 (162)
                      .++++++|+||++||++|+.+.|.+.++.++++  +.++.|+
T Consensus        72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is  111 (189)
T TIGR02661        72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMIS  111 (189)
T ss_pred             cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEe
Confidence            478999999999999999999999999988763  3444444

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.90  E-value=3.3e-09  Score=83.88  Aligned_cols=61  Identities=16%  Similarity=0.212  Sum_probs=47.0

Q ss_pred             CCCcCceecCCHH-HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285           78 PVSIPLTPIGSES-QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN  144 (162)
Q Consensus        78 ~~~~~~~~i~~~~-~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d  144 (162)
                      .+.+.+.++++.. .+.+      ..|+++||+|||+||++|+.++|.|+++.++|++ ++.++.|+++
T Consensus        79 aPdF~l~d~~G~~vsLsd------~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d  141 (236)
T PLN02399         79 VHDFTVKDIDGKDVALSK------FKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN  141 (236)
T ss_pred             CCceEEECCCCCEEeHHH------hCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence            4555555555421 1222      3589999999999999999999999999999954 5999999974

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.86  E-value=8e-09  Score=76.01  Aligned_cols=43  Identities=16%  Similarity=0.144  Sum_probs=39.2

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEEC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDV  143 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~  143 (162)
                      .+|+++||+|||+||++|+..+|.++++.++|++ ++.++.|++
T Consensus        20 ~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~   63 (153)
T TIGR02540        20 YRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC   63 (153)
T ss_pred             hCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence            4589999999999999999999999999999954 699999986

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>smart00594 UAS UAS domain

Probab=98.84  E-value=1.3e-08  Score=72.50  Aligned_cols=73  Identities=10%  Similarity=0.105  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCCh-HHHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP-HKLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~-~~la~~~~I~~~Pti  162 (162)
                      .+|++.+..+++.+|.++|+|+++||+.|+.+....   .++.+.+..++.++++|++... ..++++|++.++|++
T Consensus        14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~   90 (122)
T smart00594       14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYV   90 (122)
T ss_pred             CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEE
Confidence            468888888888999999999999999999987653   3555555557899999987553 239999999999985

>PLN02412 probable glutathione peroxidase

Probab=98.84  E-value=8.9e-09  Score=77.16  Aligned_cols=43  Identities=21%  Similarity=0.201  Sum_probs=39.4

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN  144 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d  144 (162)
                      .|+++||+||++||++|+..+|.|+++.++|++ ++.++.|+.+
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~   71 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN   71 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence            589999999999999999999999999999954 5999999875

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=5.8e-09  Score=87.64  Aligned_cols=71  Identities=24%  Similarity=0.446  Sum_probs=62.2

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+|...+.   .....++|.||+|||++|+.++|.+++++..++  ..+.++.+|++.... ++.+++|..+|++
T Consensus       150 ~~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~-~~~~~~v~~~Pt~  222 (383)
T KOG0191|consen  150 TKDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKS-LASRLEVRGYPTL  222 (383)
T ss_pred             cccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHH-HhhhhcccCCceE
Confidence            4466777663   678889999999999999999999999999984  569999999997777 9999999999985

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.74  E-value=3.3e-08  Score=73.86  Aligned_cols=44  Identities=14%  Similarity=0.408  Sum_probs=40.2

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~  145 (162)
                      .++++||+||++||+.|....+.+.++.++|+ .++.|+.|+.+.
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~   68 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSND   68 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCc
Confidence            68999999999999999999999999999995 479999998864

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.73  E-value=2.3e-08  Score=75.91  Aligned_cols=43  Identities=21%  Similarity=0.231  Sum_probs=36.5

Q ss_pred             CCCeE-EEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285          102 LDESV-IIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN  144 (162)
Q Consensus       102 ~~~~v-lV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d  144 (162)
                      .|+++ |+.+||+||++|+.++|.|+++.++|++ ++.++.|+++
T Consensus        39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~   83 (183)
T PTZ00256         39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN   83 (183)
T ss_pred             CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence            57754 4566999999999999999999999954 5999999864

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.72  E-value=4e-08  Score=85.48  Aligned_cols=76  Identities=22%  Similarity=0.375  Sum_probs=60.6

Q ss_pred             eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHH---HHHHHhCCCeEEEEEECCCChH---HHHHHcCCc
Q 031285           84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLE---KLAADYHPRLRFYNVDVNAVPH---KLVARAGVM  157 (162)
Q Consensus        84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~---~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~  157 (162)
                      +.+.+...+++.+.+  +++|+|+|||||+||-.||.+++..-   +...+. .+++..+.|++++..   ++.++||+-
T Consensus       457 q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~~~~~  533 (569)
T COG4232         457 QPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKRLGVF  533 (569)
T ss_pred             hccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHHcCCC
Confidence            667777789999955  45569999999999999999988753   333444 689999999987753   277899999


Q ss_pred             ccccC
Q 031285          158 VSLMI  162 (162)
Q Consensus       158 ~~Pti  162 (162)
                      ++|++
T Consensus       534 G~P~~  538 (569)
T COG4232         534 GVPTY  538 (569)
T ss_pred             CCCEE
Confidence            99985

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.72  E-value=3.3e-08  Score=71.51  Aligned_cols=58  Identities=14%  Similarity=0.104  Sum_probs=46.0

Q ss_pred             CCCeEEEEEecCC-ChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--HHHHHcCCcccc
Q 031285          102 LDESVIIVWMASW-CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMVSL  160 (162)
Q Consensus       102 ~~~~vlV~F~a~W-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~la~~~~I~~~P  160 (162)
                      .|+++||+||++| |++|+..+|.|+++.+++ .++.++.|+.|....  ++.+++++..+|
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~~~vi~Is~d~~~~~~~~~~~~~~~~~~   85 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-DNTVVLTISADLPFAQKRWCGAEGVDNVT   85 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence            5889999999999 699999999999999998 589999999876421  144555554444

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.70  E-value=4e-08  Score=73.56  Aligned_cols=58  Identities=10%  Similarity=0.120  Sum_probs=47.6

Q ss_pred             CCCeEEEEEecCC-ChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh--HHHHHHcCCcccc
Q 031285          102 LDESVIIVWMASW-CRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP--HKLVARAGVMVSL  160 (162)
Q Consensus       102 ~~~~vlV~F~a~W-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~--~~la~~~~I~~~P  160 (162)
                      .|+++||+||++| |++|..++|.|+++++++ .++.++.|+.|...  .++++++++..+|
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-~~~~vv~vs~D~~~~~~~f~~~~~~~~~~  103 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-DNTVVLCISADLPFAQKRFCGAEGLENVI  103 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-CCcEEEEEeCCCHHHHHHHHHhCCCCCce
Confidence            5889999999999 999999999999999998 58999999987532  2266677765444

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.69  E-value=2.4e-08  Score=76.12  Aligned_cols=43  Identities=5%  Similarity=0.028  Sum_probs=35.9

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEE------EEEECCCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRF------YNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~------~~vd~d~~  146 (162)
                      -.||++||+|||+||++|+..+|.+++++++   ++.+      +.||.++.
T Consensus        57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~  105 (184)
T TIGR01626        57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDA  105 (184)
T ss_pred             cCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccc
Confidence            4699999999999999999999999999654   3555      77777653

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.65  E-value=7.1e-08  Score=57.94  Aligned_cols=54  Identities=33%  Similarity=0.587  Sum_probs=45.6

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHH---HHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV---ARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la---~~~~I~~~Pti  162 (162)
                      ++.||++||+.|+.+.+.++++ +...+++.+..+|++...+ ..   ..+++..+|++
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~~   57 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPA-LEKELKRYGVGGVPTL   57 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChH-HhhHHHhCCCccccEE
Confidence            4789999999999999999999 4445789999999998876 44   38899999874

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.61  E-value=1.8e-07  Score=65.61  Aligned_cols=45  Identities=18%  Similarity=0.503  Sum_probs=40.5

Q ss_pred             CCCeEEEEEecC-CChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          102 LDESVIIVWMAS-WCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       102 ~~~~vlV~F~a~-WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      .++++||.||++ ||++|+...+.++++.++|+ .++.++.|+.+..
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~   70 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP   70 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence            489999999999 99999999999999999994 4799999998654

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.60  E-value=1e-07  Score=60.44  Aligned_cols=50  Identities=22%  Similarity=0.412  Sum_probs=40.1

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      +..||++||++|+.+.+.|++      .++.+..+|++.+++   ++.+.+++.++|++
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~   54 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVI   54 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEE
Confidence            567999999999999887764      357888899987754   15677999999985

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.60  E-value=1.8e-07  Score=67.47  Aligned_cols=47  Identities=15%  Similarity=0.193  Sum_probs=38.0

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChH
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPH  148 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~  148 (162)
                      .+..+|+.||++||++|+..+|.|.++.+++. .++.++.|+.+....
T Consensus        23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~   70 (149)
T cd02970          23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK   70 (149)
T ss_pred             CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH
Confidence            34455555579999999999999999999994 469999999876543

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.59  E-value=9.4e-08  Score=61.64  Aligned_cols=49  Identities=29%  Similarity=0.494  Sum_probs=37.4

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHH-----cCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR-----AGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~-----~~I~~~Pti  162 (162)
                      ++.||++||++|+.+.+.|+++.      +.+-.+|+++..+ ..+.     +++.++|+|
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~-~~~~~~~~~~~~~~vP~i   55 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEG-AADRVVSVNNGNMTVPTV   55 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHh-HHHHHHHHhCCCceeCEE
Confidence            56899999999999998886553      3445688887765 4544     389999975

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=8.6e-08  Score=74.30  Aligned_cols=76  Identities=21%  Similarity=0.397  Sum_probs=65.5

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+-.+..+.+++.+.+  ++...++|.|+|.|.+.|+...|.+.+|+.+|. +..+|++||+...++ .+++|+|...|.
T Consensus       126 ikyf~~~q~~deel~r--nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd-~a~kfris~s~~  202 (265)
T KOG0914|consen  126 IKYFTNMQLEDEELDR--NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPD-VAAKFRISLSPG  202 (265)
T ss_pred             eeeecchhhHHHHhcc--CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcC-hHHheeeccCcc
Confidence            4445566777888765  788899999999999999999999999999994 579999999999999 999999976653

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.53  E-value=3.9e-07  Score=64.86  Aligned_cols=76  Identities=17%  Similarity=0.396  Sum_probs=51.6

Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEEEec-------CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC-----hH-HHHH-
Q 031285           87 GSESQFDRVIAEAQQLDESVIIVWMA-------SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV-----PH-KLVA-  152 (162)
Q Consensus        87 ~~~~~f~~~l~~~~~~~~~vlV~F~a-------~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-----~~-~la~-  152 (162)
                      .+.++|.+.+.....++++++|.|++       +||+.|+...|.+++..+....+..++.|.+..-     ++ ..-. 
T Consensus         3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~   82 (119)
T PF06110_consen    3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD   82 (119)
T ss_dssp             ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred             cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence            45677888886544677999999996       5999999999999998888656799998987322     11 1333 


Q ss_pred             -HcCCcccccC
Q 031285          153 -RAGVMVSLMI  162 (162)
Q Consensus       153 -~~~I~~~Pti  162 (162)
                       +++|.++||+
T Consensus        83 p~~~l~~IPTL   93 (119)
T PF06110_consen   83 PDLKLKGIPTL   93 (119)
T ss_dssp             -CC---SSSEE
T ss_pred             ceeeeeecceE
Confidence             5999999985

; PDB: 1V9W_A 1WOU_A.

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.51  E-value=1.7e-07  Score=61.46  Aligned_cols=54  Identities=24%  Similarity=0.309  Sum_probs=42.4

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH----HHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH----KLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~la~~~~I~~~Pti  162 (162)
                      |+.|+++||++|+.+.+.|+++.  ..+.+.++.+|.+.+..    .+.+.+++..+|++
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v   58 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI   58 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE
Confidence            46799999999999999999877  33457888888876542    25666799999975

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.50  E-value=3.2e-07  Score=65.94  Aligned_cols=44  Identities=11%  Similarity=0.252  Sum_probs=39.3

Q ss_pred             CCCeEEEEEecCCChh-hhhhhHhHHHHHHHhCC----CeEEEEEECCC
Q 031285          102 LDESVIIVWMASWCRK-CIYLKPKLEKLAADYHP----RLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~-C~~~~p~l~~l~~~~~~----~v~~~~vd~d~  145 (162)
                      .++++||.||++||++ |....+.+.++.++++.    ++.++.|+.|.
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~   69 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP   69 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence            5899999999999998 99999999999999943    49999998864

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.49  E-value=2.3e-07  Score=70.73  Aligned_cols=43  Identities=19%  Similarity=0.207  Sum_probs=38.1

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d  144 (162)
                      ..|+++||.|||+||++|+ ..|.|+++.++|++ ++.++.+.++
T Consensus        23 ~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         23 YAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             hCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence            4689999999999999997 58999999999954 6999999885

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.49  E-value=2.3e-07  Score=68.66  Aligned_cols=46  Identities=17%  Similarity=0.353  Sum_probs=38.7

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCC---eEEEEEECCCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPR---LRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~  146 (162)
                      -.||.|.++|.|.||+|||.+-|.+.++.++.+..   +.++-|+-|..
T Consensus        31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~   79 (157)
T KOG2501|consen   31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRD   79 (157)
T ss_pred             hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCC
Confidence            36899999999999999999999999999998544   77777776543

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.47  E-value=2.5e-07  Score=70.48  Aligned_cols=78  Identities=22%  Similarity=0.288  Sum_probs=71.5

Q ss_pred             CCcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcc
Q 031285           79 VSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV  158 (162)
Q Consensus        79 ~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~  158 (162)
                      ......+|.++.+|-+..    .+...||+.||-+--..|+.+...|+.|++.| -+.+|++||++..|- ++.+++|+.
T Consensus        64 GhG~y~ev~~Ekdf~~~~----~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h-~eTrFikvnae~~PF-lv~kL~IkV  137 (211)
T KOG1672|consen   64 GHGEYEEVASEKDFFEEV----KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH-VETRFIKVNAEKAPF-LVTKLNIKV  137 (211)
T ss_pred             CCceEEEeccHHHHHHHh----hcCceEEEEEEcCCCcceehHHHHHHHHHHhc-ccceEEEEecccCce-eeeeeeeeE
Confidence            344688898999998888    67888999999999999999999999999999 889999999999999 999999999


Q ss_pred             cccC
Q 031285          159 SLMI  162 (162)
Q Consensus       159 ~Pti  162 (162)
                      +|++
T Consensus       138 LP~v  141 (211)
T KOG1672|consen  138 LPTV  141 (211)
T ss_pred             eeeE
Confidence            9985

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.40  E-value=7.3e-07  Score=64.65  Aligned_cols=43  Identities=12%  Similarity=0.241  Sum_probs=37.6

Q ss_pred             CeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          104 ESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       104 ~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      ++++|.|| ++||+.|....|.++++.++++ .++.++.|+.+..
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~   73 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSP   73 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCH
Confidence            88888888 9999999999999999999994 4699999987653

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>TIGR03137 AhpC peroxiredoxin

Probab=98.37  E-value=8.4e-07  Score=67.60  Aligned_cols=46  Identities=13%  Similarity=0.165  Sum_probs=40.3

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      ..|+++||+|| ++||++|...+|.|.++.++++ .++.++.|+.|..
T Consensus        29 ~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~   76 (187)
T TIGR03137        29 VKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTH   76 (187)
T ss_pred             HCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCH
Confidence            35889999999 9999999999999999999984 4688999887753

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=2.2e-06  Score=60.57  Aligned_cols=74  Identities=15%  Similarity=0.440  Sum_probs=57.3

Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEEEec--------CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh-------HHHH
Q 031285           87 GSESQFDRVIAEAQQLDESVIIVWMA--------SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-------HKLV  151 (162)
Q Consensus        87 ~~~~~f~~~l~~~~~~~~~vlV~F~a--------~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-------~~la  151 (162)
                      ...++|++.+..- .+++-++|.|++        +||+.|.+..|.+.+..+....++.|+.+++..-+       . +-
T Consensus        10 ~g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~-FR   87 (128)
T KOG3425|consen   10 PGYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANP-FR   87 (128)
T ss_pred             chHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCc-cc
Confidence            4567888888664 567779999997        79999999999999988876678999999985332       2 44


Q ss_pred             HHcCC-cccccC
Q 031285          152 ARAGV-MVSLMI  162 (162)
Q Consensus       152 ~~~~I-~~~Pti  162 (162)
                      ...++ .++||+
T Consensus        88 ~d~~~lt~vPTL   99 (128)
T KOG3425|consen   88 KDPGILTAVPTL   99 (128)
T ss_pred             cCCCceeeccee
Confidence            55666 777774

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.31  E-value=1.2e-06  Score=65.60  Aligned_cols=45  Identities=7%  Similarity=0.112  Sum_probs=40.0

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      .|+++||+|| ++||++|....+.|+++.++|. .++.++.|+.|..
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~   74 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH   74 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH
Confidence            4799999999 8999999999999999999994 4689999988754

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.31  E-value=1.6e-06  Score=62.16  Aligned_cols=45  Identities=11%  Similarity=0.163  Sum_probs=39.1

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      .|++++|+|| +.||+.|....+.+.++.+++. .++.++.|..+..
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~   68 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV   68 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            4899999999 5899999999999999999984 4689999987654

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.30  E-value=1.1e-06  Score=65.72  Aligned_cols=67  Identities=15%  Similarity=0.249  Sum_probs=44.5

Q ss_pred             HHHHHHhcCCCeEEEEEecCCChhhhhhhH-hH--HHHHHHhCCCeEEEEEECCCChHHHHHHc--------CCccccc
Q 031285           94 RVIAEAQQLDESVIIVWMASWCRKCIYLKP-KL--EKLAADYHPRLRFYNVDVNAVPHKLVARA--------GVMVSLM  161 (162)
Q Consensus        94 ~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p-~l--~~l~~~~~~~v~~~~vd~d~~~~~la~~~--------~I~~~Pt  161 (162)
                      +.+..|++.+|+++|+++.+||+.|+.|.- .|  .++++.+...+.-++||.++.++ +...|        |.-+.|+
T Consensus        28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd-id~~y~~~~~~~~~~gGwPl  105 (163)
T PF03190_consen   28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD-IDKIYMNAVQAMSGSGGWPL  105 (163)
T ss_dssp             HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH-HHHHHHHHHHHHHS---SSE
T ss_pred             HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc-HHHHHHHHHHHhcCCCCCCc
Confidence            444444588999999999999999998874 34  35666654568999999999999 88877        6777775

; PDB: 3IRA_A.

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.29  E-value=3.7e-06  Score=65.67  Aligned_cols=59  Identities=22%  Similarity=0.358  Sum_probs=50.9

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC-----------ChHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA-----------VPHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------~~~~la~~~~I~~~Pti  162 (162)
                      -.++.-|+.||.+.|+.|..+.|.++.++++|  ++.++.|++|.           +.+ +++++||..+|++
T Consensus       118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g-~~~~l~v~~~Pal  187 (215)
T PF13728_consen  118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPG-QAKRLGVKVTPAL  187 (215)
T ss_pred             HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHH-HHHHcCCCcCCEE
Confidence            45888899999999999999999999999999  66777777763           356 8999999999975

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.28  E-value=2e-06  Score=61.50  Aligned_cols=45  Identities=13%  Similarity=0.250  Sum_probs=39.7

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAV  146 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~  146 (162)
                      .+++++|.|| +.||+.|....|.+.++.+++ ..++.|+.|..+..
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~   67 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP   67 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence            5899999999 789999999999999999998 35699999988643

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.19  E-value=3e-06  Score=62.07  Aligned_cols=45  Identities=7%  Similarity=0.146  Sum_probs=38.5

Q ss_pred             CCCeEEEEEecC-CChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          102 LDESVIIVWMAS-WCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       102 ~~~~vlV~F~a~-WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      +++++||+||++ ||+.|....+.+.++.++++ .++.++.|+.|..
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~   75 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP   75 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            588999999986 67789999999999999984 4699999988654

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=98.18  E-value=3.9e-06  Score=55.73  Aligned_cols=56  Identities=23%  Similarity=0.361  Sum_probs=44.8

Q ss_pred             EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcC--CcccccC
Q 031285          106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAG--VMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~la~~~~--I~~~Pti  162 (162)
                      -|+.|+.+||+.|++....|+++.+++ .++.+..+|++...   +++.+..+  +..+|+|
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~i   62 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQI   62 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEE
Confidence            467899999999999999999999887 68888899998753   22555555  4788875

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.12  E-value=1.2e-05  Score=58.23  Aligned_cols=68  Identities=10%  Similarity=0.069  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEec--CCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMA--SWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a--~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .+++..+    ......++.|-.  --++-+-...-.+++++++|. .+++|++||+|.+++ ++.+|||+++||+
T Consensus        25 ~~~~~~~----~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~-LA~~fgV~siPTL   95 (132)
T PRK11509         25 SRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA-IGDRFGVFRFPAT   95 (132)
T ss_pred             ccHHHHH----hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH-HHHHcCCccCCEE
Confidence            5677777    455555555543  256677778888999999995 359999999999999 9999999999985

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.11  E-value=6.7e-06  Score=64.18  Aligned_cols=46  Identities=15%  Similarity=0.195  Sum_probs=39.5

Q ss_pred             CCCe-EEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh
Q 031285          102 LDES-VIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP  147 (162)
Q Consensus       102 ~~~~-vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~  147 (162)
                      .|++ +|+.||++||++|..+++.|.++.++++ .++.++.|++|...
T Consensus        27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~   74 (215)
T PRK13599         27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVF   74 (215)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence            4666 4679999999999999999999999994 47999999998753

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=2.1e-06  Score=66.80  Aligned_cols=71  Identities=15%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      ++.+...+.|  ..    .+++..++.||++||.+|..+...++.+++.. .++.+++++.+..++ ++..+.+..+|.
T Consensus         3 v~~i~~~~~f--~~----~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~e-is~~~~v~~vp~   73 (227)
T KOG0911|consen    3 VQFIVFQEQF--LD----QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPE-ISNLIAVEAVPY   73 (227)
T ss_pred             ceeehhHHHH--HH----hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhH-HHHHHHHhcCce
Confidence            4455555666  33    57999999999999999999999999999998 889999999999999 999999999886

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.06  E-value=2.7e-07  Score=72.12  Aligned_cols=68  Identities=28%  Similarity=0.438  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.+++.+.+      ..-+++.|+|+||+.|+...|+|+.++.-- +-++.+.+||+..++. +.-+|-+..+|+|
T Consensus        30 ~eenw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg-LsGRF~vtaLptI   98 (248)
T KOG0913|consen   30 DEENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG-LSGRFLVTALPTI   98 (248)
T ss_pred             cccchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc-cceeeEEEecceE
Confidence            667888888      455789999999999999999999988765 2369999999999999 9999999999987

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.05  E-value=1.1e-05  Score=50.91  Aligned_cols=49  Identities=22%  Similarity=0.365  Sum_probs=35.7

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHc----CCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA----GVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~----~I~~~Pti  162 (162)
                      ++.|+++||++|+.+...+++      .++.+..+|++...+ ..+.+    ++..+|+|
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~------~~i~~~~~~i~~~~~-~~~~~~~~~~~~~vP~i   54 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE------RGIPFEEVDVDEDPE-ALEELKKLNGYRSVPVV   54 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH------CCCCeEEEeCCCCHH-HHHHHHHHcCCcccCEE
Confidence            567999999999998777664      246677788877654 34433    68888875

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.04  E-value=1.1e-05  Score=62.29  Aligned_cols=45  Identities=11%  Similarity=0.203  Sum_probs=38.2

Q ss_pred             CCCeEEE-EEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          102 LDESVII-VWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       102 ~~~~vlV-~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      .|+.+|+ .||++||+.|..+.+.|.++.++++ .++.++.|++|..
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~   72 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSI   72 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence            4676655 6899999999999999999999994 4699999998864

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.03  E-value=1.1e-05  Score=61.75  Aligned_cols=46  Identities=9%  Similarity=0.125  Sum_probs=40.5

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      ..|+++|+.|| ++||+.|..+.+.|.++.+++. .++.++.|+.|..
T Consensus        29 ~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~   76 (187)
T PRK10382         29 TEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTH   76 (187)
T ss_pred             hCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCH
Confidence            35889999999 9999999999999999999994 4688999988754

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.02  E-value=5.3e-06  Score=66.75  Aligned_cols=79  Identities=18%  Similarity=0.209  Sum_probs=60.0

Q ss_pred             CcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccc
Q 031285           80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        80 ~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      ...+.++.+.+.|.+.+... ..+..|||+||-+.+..|..+...|..|+.+| +.++|++|.....+  +..+|.+..+
T Consensus       124 fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-p~vKFvkI~a~~~~--~~~~f~~~~L  199 (265)
T PF02114_consen  124 FGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-PEVKFVKIRASKCP--ASENFPDKNL  199 (265)
T ss_dssp             --SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--TTSEEEEEEECGCC--TTTTS-TTC-
T ss_pred             CceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEEehhccC--cccCCcccCC
Confidence            34567888888888888432 34568999999999999999999999999999 89999999998764  4788999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      |+|
T Consensus       200 Ptl  202 (265)
T PF02114_consen  200 PTL  202 (265)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            985

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=98.00  E-value=1.3e-05  Score=61.76  Aligned_cols=42  Identities=17%  Similarity=0.373  Sum_probs=36.4

Q ss_pred             eEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          105 SVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       105 ~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      .+|+.||++||+.|....+.|.++.++++ .++.++.|++|..
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~   70 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSV   70 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence            45668999999999999999999999994 4699999998753

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.00  E-value=6.5e-06  Score=59.37  Aligned_cols=60  Identities=20%  Similarity=0.305  Sum_probs=39.6

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHH---cCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR---AGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~---~~I~~~Pti  162 (162)
                      ...+..++.|..+|||.|+...|.|.++++.. +++.+-.+..|++++ +..+   .|..++|++
T Consensus        39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~e-l~~~~lt~g~~~IP~~  101 (129)
T PF14595_consen   39 IQKPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKE-LMDQYLTNGGRSIPTF  101 (129)
T ss_dssp             --S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHH-HTTTTTT-SS--SSEE
T ss_pred             cCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChh-HHHHHHhCCCeecCEE
Confidence            34556777799999999999999999999997 677777777777776 5544   467888864

>PRK13191 putative peroxiredoxin; Provisional

Probab=97.96  E-value=2e-05  Score=61.49  Aligned_cols=46  Identities=7%  Similarity=0.066  Sum_probs=38.9

Q ss_pred             CCCeEE-EEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh
Q 031285          102 LDESVI-IVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP  147 (162)
Q Consensus       102 ~~~~vl-V~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~  147 (162)
                      .|+++| +.||++||+.|..+.+.|.+++++++ .+++++.|++|...
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~   79 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNI   79 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence            466555 48899999999999999999999994 56999999998654

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.96  E-value=3.6e-05  Score=61.60  Aligned_cols=59  Identities=10%  Similarity=0.154  Sum_probs=50.2

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC-----------hHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV-----------PHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-----------~~~la~~~~I~~~Pti  162 (162)
                      -.++.-||.||.+-|+.|..+.|.++.++++|  ++.++.|++|..           .. +++++||..+|++
T Consensus       148 la~~~gL~fFy~~~C~~C~~~apil~~fa~~y--gi~v~~VS~DG~~~p~fp~~~~d~g-qa~~l~v~~~Pal  217 (256)
T TIGR02739       148 LSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY--GISVIPISVDGTLIPGLPNSRSDSG-QAQHLGVKYFPAL  217 (256)
T ss_pred             HHhceeEEEEECCCCchhHHHHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCccCChH-HHHhcCCccCceE
Confidence            34668899999999999999999999999999  577777777655           44 7999999999974

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PRK15000 peroxidase; Provisional

Probab=97.96  E-value=1.8e-05  Score=61.08  Aligned_cols=45  Identities=7%  Similarity=0.180  Sum_probs=40.4

Q ss_pred             CCCeEEEEEec-CCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          102 LDESVIIVWMA-SWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       102 ~~~~vlV~F~a-~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      .|+++|+.||+ .||+.|..+.+.|.++.++++ .++.++.|++|..
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~   79 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSE   79 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence            68999999998 599999999999999999994 4699999999854

>PRK13189 peroxiredoxin; Provisional

Probab=97.94  E-value=2.1e-05  Score=61.65  Aligned_cols=46  Identities=11%  Similarity=0.146  Sum_probs=38.5

Q ss_pred             CCC-eEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh
Q 031285          102 LDE-SVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP  147 (162)
Q Consensus       102 ~~~-~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~  147 (162)
                      .|+ .+|+.||++||+.|..+.+.|.+++++++ .+++++.|++|...
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~   81 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVF   81 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence            466 45568889999999999999999999994 56999999988653

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.92  E-value=3.6e-05  Score=54.46  Aligned_cols=71  Identities=8%  Similarity=0.087  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhcCCCeEEEEEecC----CChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh-HHHHHHcCCcccccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWMAS----WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-HKLVARAGVMVSLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a~----WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~la~~~~I~~~Pti  162 (162)
                      .|++.+..+++++|.++|++|++    ||..|+..... +++.+-...++.+++.|++... -.++..+++.++|++
T Consensus         5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~   80 (116)
T cd02991           5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFL   80 (116)
T ss_pred             cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEE
Confidence            57788888889999999999999    99999766511 2333333446899999998654 238999999999974

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.89  E-value=1.9e-05  Score=51.47  Aligned_cols=52  Identities=19%  Similarity=0.297  Sum_probs=39.4

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH----HHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH----KLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~la~~~~I~~~Pti  162 (162)
                      |+.|+++||+.|+.+...|+++..    .+.++.++.+....    .+.+..|+.++|.+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v   57 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV   57 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence            577999999999999988887665    45788888876631    25556788888864

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.86  E-value=4.1e-05  Score=49.91  Aligned_cols=50  Identities=18%  Similarity=0.288  Sum_probs=39.7

Q ss_pred             EEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       109 ~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .+++++|+.|..+...++++++++ + +.+-.+|+...++ + .+|||.++|++
T Consensus         4 ~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~-~-~~ygv~~vPal   53 (76)
T PF13192_consen    4 KVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEE-I-EKYGVMSVPAL   53 (76)
T ss_dssp             EEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHH-H-HHTT-SSSSEE
T ss_pred             EEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHH-H-HHcCCCCCCEE
Confidence            336888999999999999999998 3 6666677755555 6 99999999985

...

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.78  E-value=4.9e-05  Score=61.06  Aligned_cols=45  Identities=11%  Similarity=0.194  Sum_probs=38.7

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      .++.+|+.|| ++||++|..+.+.|.++.++++ .++.++.|++|..
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~  143 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSP  143 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence            5677777777 9999999999999999999994 4689999998874

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.78  E-value=4.3e-05  Score=51.04  Aligned_cols=55  Identities=24%  Similarity=0.361  Sum_probs=41.7

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCC--cccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGV--MVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~la~~~~I--~~~Pti  162 (162)
                      |+.|..+||+.|.+....|+++..++ +++.+..+|++...   +++.+..+-  ..+|.|
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~-~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~i   61 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIER-ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQI   61 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCccc-CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeE
Confidence            56789999999999999998887765 56778888887543   226666664  788864

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=97.74  E-value=0.00024  Score=49.45  Aligned_cols=74  Identities=19%  Similarity=0.318  Sum_probs=51.3

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMV  158 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~  158 (162)
                      ++.+++.+++++++..  +..++++|.=+++.|+-.......|++..++..+++.++.+|+-+..+   .+|++|||..
T Consensus         1 w~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H   77 (105)
T PF11009_consen    1 WKPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH   77 (105)
T ss_dssp             --E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT---
T ss_pred             CCccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc
Confidence            3567889999999965  679999998899999999999999999999985569999999977642   3899999863

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.70  E-value=0.00016  Score=57.65  Aligned_cols=58  Identities=14%  Similarity=0.088  Sum_probs=47.0

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC-----------ChHHHHHHcCCcccccC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA-----------VPHKLVARAGVMVSLMI  162 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------~~~~la~~~~I~~~Pti  162 (162)
                      .++.-|+.||.+-|+.|..+.|.++.++++|  ++.++.|++|.           +.. .++++||..+|++
T Consensus       142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y--g~~v~~VS~DG~~~p~fp~~~~d~g-qa~~l~v~~~PAl  210 (248)
T PRK13703        142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY--GLSVIPVSVDGVINPLLPDSRTDQG-QAQRLGVKYFPAL  210 (248)
T ss_pred             HhcceEEEEECCCCchhHHHHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCCccChh-HHHhcCCcccceE
Confidence            4668899999999999999999999999999  45565566553           223 6789999999974

>KOG3414 consensus Component of the U4/U6

Probab=97.69  E-value=0.0002  Score=51.19  Aligned_cols=75  Identities=21%  Similarity=0.339  Sum_probs=66.0

Q ss_pred             ecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           85 PIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        85 ~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .+.+.+..++.+..  ...+.|+|-|.-.|-+.|..+...|.++++....-..++-+|+++.++ +.+-|++...|++
T Consensus         7 ~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~-~~~~~~l~~p~tv   81 (142)
T KOG3414|consen    7 TLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD-FVKMYELYDPPTV   81 (142)
T ss_pred             ccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh-hhhhhcccCCceE
Confidence            45577888888876  789999999999999999999999999999996668889999999998 9999999888864

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.67  E-value=0.0001  Score=46.00  Aligned_cols=50  Identities=26%  Similarity=0.357  Sum_probs=37.0

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      ++.|+++||+.|+.+...|++..      +.+..+|++.+.+   .+.+..+...+|++
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~   54 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQI   54 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence            56789999999999987777543      6677888887754   24455677788864

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.61  E-value=0.00013  Score=45.02  Aligned_cols=50  Identities=22%  Similarity=0.347  Sum_probs=37.2

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      |+.|+.+||+.|+.....|    +++  ++.+-.+|++..++   ++.+..|...+|+|
T Consensus         1 V~vy~~~~C~~C~~~~~~L----~~~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v   53 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFL----DEK--GIPYEEVDVDEDEEAREELKELSGVRTVPQV   53 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHH----HHT--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEE
T ss_pred             cEEEEcCCCcCHHHHHHHH----HHc--CCeeeEcccccchhHHHHHHHHcCCCccCEE
Confidence            5679999999999987666    343  57788888887743   24445599999975

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.57  E-value=0.00084  Score=48.35  Aligned_cols=73  Identities=22%  Similarity=0.320  Sum_probs=61.2

Q ss_pred             eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccc
Q 031285           84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSL  160 (162)
Q Consensus        84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~P  160 (162)
                      ..+.+....++.+..  ...+.++|-|.-+|-+.|.++...|.+++++.+.-..++.+|+++.++ +-+-|.+. .|
T Consensus         3 ~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd-fn~~yel~-dP   75 (133)
T PF02966_consen    3 PHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD-FNQMYELY-DP   75 (133)
T ss_dssp             EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC-CHHHTTS--SS
T ss_pred             cccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh-hhcccccC-CC
Confidence            345678889999887  789999999999999999999999999999996668999999999998 88888876 44

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.56  E-value=0.00017  Score=55.31  Aligned_cols=46  Identities=4%  Similarity=0.079  Sum_probs=39.9

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP  147 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~  147 (162)
                      .|+.++|.|| +.||+.|....+.|.++.+++. .++.++.|++|...
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~   82 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEY   82 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH
Confidence            4889999999 4899999999999999999994 47999999988654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.50  E-value=0.00038  Score=61.33  Aligned_cols=59  Identities=22%  Similarity=0.331  Sum_probs=51.6

Q ss_pred             CCCeE-EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          102 LDESV-IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       102 ~~~~v-lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      -++++ +-.|.++||+.|......+++++.+. +++..-.+|+...++ ++++|+|.++|++
T Consensus       474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~i~~~~i~~~~~~~-~~~~~~v~~vP~~  533 (555)
T TIGR03143       474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PNVEAEMIDVSHFPD-LKDEYGIMSVPAI  533 (555)
T ss_pred             cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CCceEEEEECcccHH-HHHhCCceecCEE
Confidence            34555 44567999999999999999999997 789999999999999 9999999999985

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.46  E-value=0.00043  Score=60.39  Aligned_cols=58  Identities=14%  Similarity=0.203  Sum_probs=52.5

Q ss_pred             CCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..-+-.|.+++|+.|......+++++.+. +.+.+-.+|....++ ++++|+|.++|++
T Consensus       116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~~i~~~~id~~~~~~-~~~~~~v~~VP~~  173 (517)
T PRK15317        116 GDFHFETYVSLSCHNCPDVVQALNLMAVLN-PNITHTMIDGALFQD-EVEARNIMAVPTV  173 (517)
T ss_pred             CCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-CCceEEEEEchhCHh-HHHhcCCcccCEE
Confidence            444578899999999999999999999986 789999999999999 9999999999974

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.41  E-value=0.00014  Score=47.60  Aligned_cols=54  Identities=17%  Similarity=0.286  Sum_probs=37.8

Q ss_pred             CCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--HHHHHcCCcccccC
Q 031285          103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMVSLMI  162 (162)
Q Consensus       103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~la~~~~I~~~Pti  162 (162)
                      .+.-|+.|+.+||+.|++..-.|+    ++  ++.+..+|++...+  .+.+..|...+|.|
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~----~~--gi~y~~idi~~~~~~~~~~~~~g~~~vP~i   61 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLK----EK--GYDFEEIPLGNDARGRSLRAVTGATTVPQV   61 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHH----Hc--CCCcEEEECCCChHHHHHHHHHCCCCcCeE
Confidence            444567799999999999887775    33  45566677766532  25556788999874

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=97.39  E-value=0.00043  Score=49.72  Aligned_cols=42  Identities=26%  Similarity=0.439  Sum_probs=35.1

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV  143 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~  143 (162)
                      ..++++|+.|+.++|++|+.+.|.++++..++ +++.++..+.
T Consensus         3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~   44 (154)
T cd03023           3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKEF   44 (154)
T ss_pred             CCCCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEeC
Confidence            35788999999999999999999999988887 5666665554

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.36  E-value=0.00044  Score=44.31  Aligned_cols=48  Identities=21%  Similarity=0.418  Sum_probs=35.5

Q ss_pred             EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHH---cCCcccccC
Q 031285          108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR---AGVMVSLMI  162 (162)
Q Consensus       108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~---~~I~~~Pti  162 (162)
                      ..|..+||+.|+.....|++      .++.+-.+|++++++ ..+.   .|...+|.+
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~-~~~~~~~~g~~~vP~v   52 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPE-AIDYVKAQGFRQVPVI   52 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHH-HHHHHHHcCCcccCEE
Confidence            46789999999998877753      356777788888765 4443   488888864

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PHA03050 glutaredoxin; Provisional

Probab=97.34  E-value=0.00054  Score=47.87  Aligned_cols=55  Identities=11%  Similarity=0.083  Sum_probs=35.1

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC-Ch---HHHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA-VP---HKLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-~~---~~la~~~~I~~~Pti  162 (162)
                      |+.|..+|||.|++....|+++.-++ +.+..+.||-.. ..   +.+.+.-|...+|.|
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~-~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I   73 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKR-GAYEIVDIKEFKPENELRDYFEQITGGRTVPRI   73 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCc-CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE
Confidence            56689999999999987776655433 234444444311 21   225566788888875

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=97.28  E-value=0.00069  Score=44.43  Aligned_cols=37  Identities=24%  Similarity=0.440  Sum_probs=30.1

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV  143 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~  143 (162)
                      |+.|+.++|+.|..+.+.++++.+...+++.+....+
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~   37 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF   37 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence            4679999999999999999999866666776665544

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.28  E-value=0.00048  Score=44.72  Aligned_cols=50  Identities=20%  Similarity=0.444  Sum_probs=35.0

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      |+.|+.+||+.|......|++    +  ++.+-.+|++.+++   ++.+..|...+|+|
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~----~--~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i   53 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSS----K--GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI   53 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHH----c--CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE
Confidence            356889999999999877764    3  35556667776654   14444578888875

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.12  E-value=0.0015  Score=41.67  Aligned_cols=50  Identities=22%  Similarity=0.434  Sum_probs=34.8

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHH---HHHHcCCc-ccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHK---LVARAGVM-VSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~---la~~~~I~-~~Pti  162 (162)
                      |+.|+.+||+.|......|++    +  ++.+-.+|++.+++.   +.+..+.. .+|.|
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~----~--~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v   55 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDK----K--GVDYEEIDVDGDPALREEMINRSGGRRTVPQI   55 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHH----C--CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE
Confidence            567889999999998866654    3  466667788776541   33445766 78864

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PRK10329 glutaredoxin-like protein; Provisional

Probab=97.08  E-value=0.0018  Score=42.73  Aligned_cols=50  Identities=20%  Similarity=0.380  Sum_probs=36.3

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHH--HHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHK--LVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~--la~~~~I~~~Pti  162 (162)
                      +..|..+||+.|....-.|+    +  .++.|-.+|++..++.  ..+..|...+|.+
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~----~--~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv   54 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAME----S--RGFDFEMINVDRVPEAAETLRAQGFRQLPVV   54 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHH----H--CCCceEEEECCCCHHHHHHHHHcCCCCcCEE
Confidence            56788999999999876664    2  3678888899887752  1234577788864

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.94  E-value=0.0031  Score=55.04  Aligned_cols=58  Identities=14%  Similarity=0.188  Sum_probs=52.3

Q ss_pred             CCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..-+-.|.++.|+.|......+++++.+. +.+..-.+|....++ ++++|+|.++|++
T Consensus       117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~~~~~-~~~~~~v~~VP~~  174 (515)
T TIGR03140       117 GPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGALFQD-EVEALGIQGVPAV  174 (515)
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEchhCHH-HHHhcCCcccCEE
Confidence            445578899999999999999999999997 789999999999999 9999999999974

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=96.89  E-value=0.0051  Score=45.56  Aligned_cols=74  Identities=16%  Similarity=0.333  Sum_probs=60.8

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCe-EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCc--cc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDES-VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM--VS  159 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~-vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~--~~  159 (162)
                      +..+ +.+++..+.    ..+.+ +++.|...-..........++.+++++.+++.|+.+|.+..+. +++.+|+.  .+
T Consensus        79 v~~~-t~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~-~~~~~~i~~~~~  152 (184)
T PF13848_consen   79 VPEL-TPENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPR-LLKYFGIDEDDL  152 (184)
T ss_dssp             CEEE-STTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHH-HHHHTTTTTSSS
T ss_pred             cccc-chhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHH-HHHHcCCCCccC
Confidence            3344 456888888    67766 7777777777888889999999999998889999999998888 99999998  78


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      |.+
T Consensus       153 P~~  155 (184)
T PF13848_consen  153 PAL  155 (184)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            864

...

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=96.85  E-value=0.0013  Score=45.05  Aligned_cols=50  Identities=14%  Similarity=0.186  Sum_probs=30.9

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--H----HHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--K----LVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~----la~~~~I~~~Pti  162 (162)
                      |+.|..+||+.|++....|++    +  ++.+..+|++..++  +    +.+..|...+|.|
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~----~--~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V   65 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLT----L--GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV   65 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHH----c--CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE
Confidence            556899999999998765554    3  23334555554432  1    3333467788864

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.76  E-value=0.0048  Score=39.42  Aligned_cols=50  Identities=20%  Similarity=0.440  Sum_probs=35.5

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      ++.|..+||+.|++..-.|++    +  ++.+..+|++..++   ++.+..+-..+|.|
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~----~--gi~~~~~di~~~~~~~~el~~~~g~~~vP~v   55 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE----K--GLPYVEINIDIFPERKAELEERTGSSVVPQI   55 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH----C--CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence            566889999999998866663    3  46666778887654   25555577777764

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=96.72  E-value=0.0017  Score=41.36  Aligned_cols=50  Identities=16%  Similarity=0.281  Sum_probs=34.9

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--HHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~la~~~~I~~~Pti  162 (162)
                      |+.|..+||+.|.+....|++    +  ++.+..+|++.+.+  .+.+..|...+|.|
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~----~--~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i   54 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE----N--GISYEEIPLGKDITGRSLRAVTGAMTVPQV   54 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH----c--CCCcEEEECCCChhHHHHHHHhCCCCcCeE
Confidence            567889999999998766653    3  45666677766542  14444688888864

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=96.71  E-value=0.0072  Score=44.61  Aligned_cols=58  Identities=16%  Similarity=0.072  Sum_probs=41.0

Q ss_pred             CCeEEEEEecCCChhhhhh-hHhHHHHHHHhC-CCe-EEEEEECCCCh--HHHHHHcCC-cccc
Q 031285          103 DESVIIVWMASWCRKCIYL-KPKLEKLAADYH-PRL-RFYNVDVNAVP--HKLVARAGV-MVSL  160 (162)
Q Consensus       103 ~~~vlV~F~a~WC~~C~~~-~p~l~~l~~~~~-~~v-~~~~vd~d~~~--~~la~~~~I-~~~P  160 (162)
                      +..+|+.|.+.||+.|... .+.|.+..+++. .++ .++.|..|...  ..+++++++ ..+|
T Consensus        30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~   93 (155)
T cd03013          30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR   93 (155)
T ss_pred             CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence            3444555559999999999 999999999983 456 58888877543  226667776 2444

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.0077  Score=44.85  Aligned_cols=62  Identities=15%  Similarity=0.310  Sum_probs=48.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCC---------------hHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAV---------------PHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~---------------~~~la~~~~I~~~Pti  162 (162)
                      -.++..+++|-++.|..|-.+...+   +++.+-+.+.+.++.+|+...               .+++|+.|+|+++|++
T Consensus        40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf  119 (182)
T COG2143          40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF  119 (182)
T ss_pred             ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence            6789999999999999999888665   455555666688888886311               1239999999999985

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.66  E-value=0.0034  Score=47.91  Aligned_cols=27  Identities=22%  Similarity=0.373  Sum_probs=23.7

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEK  127 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~  127 (162)
                      ..++..|+.|..+.|++|+++.+.+.+
T Consensus        75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          75 GNGKRVVYVFTDPDCPYCRKLEKELKP  101 (197)
T ss_pred             CCCCEEEEEEECCCCccHHHHHHHHhh
Confidence            347889999999999999999988876

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=96.60  E-value=0.011  Score=40.28  Aligned_cols=61  Identities=13%  Similarity=0.099  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhcCCCeEEEEEe----cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWM----ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~----a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      ..++.+    ++ .+|+|+-.    ++||+.|++....|++    +  ++.+..+|++.+++   .+.+..|...+|.|
T Consensus         4 ~v~~~i----~~-~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~----~--~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v   71 (97)
T TIGR00365         4 RIKEQI----KE-NPVVLYMKGTPQFPQCGFSARAVQILKA----C--GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL   71 (97)
T ss_pred             HHHHHh----cc-CCEEEEEccCCCCCCCchHHHHHHHHHH----c--CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence            345555    44 45555444    3899999998766654    3  35666788877654   14445566777764

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.52  E-value=0.0046  Score=45.69  Aligned_cols=42  Identities=21%  Similarity=0.422  Sum_probs=36.4

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV  143 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~  143 (162)
                      .+++.|+.|+...|++|+.+.+.+.++.+++.+++.+..+.+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~   55 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV   55 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence            578899999999999999999999999999866777765554

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=96.51  E-value=0.01  Score=43.06  Aligned_cols=47  Identities=19%  Similarity=0.287  Sum_probs=39.9

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHh--CCCeEEEEEECCCCh
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVP  147 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~  147 (162)
                      ...+++|+.|+..-|++|+.+.+.+.++.+++  .+++.|+..++....
T Consensus        10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~   58 (162)
T PF13462_consen   10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDK   58 (162)
T ss_dssp             TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSH
T ss_pred             CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccc
Confidence            45788999999999999999999999999999  678999988885443

...

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=96.49  E-value=0.0063  Score=40.79  Aligned_cols=54  Identities=13%  Similarity=0.124  Sum_probs=34.0

Q ss_pred             CCeEEEEEec----CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285          103 DESVIIVWMA----SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus       103 ~~~vlV~F~a----~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      +.+|+|.-.+    +||+.|+.....|++.      ++.+-.+|++..++   .+.+..|-..+|.|
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v   67 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL   67 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE
Confidence            4455553332    7999999987666543      35666677766654   14445677788864

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.45  E-value=0.0047  Score=40.61  Aligned_cols=51  Identities=24%  Similarity=0.438  Sum_probs=42.6

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      |+.|..+.|+-|......++++..+.  .+.+-.||++.+++ +.++|+. .+|.
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~-l~~~Y~~-~IPV   52 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPE-LFEKYGY-RIPV   52 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHH-HHHHSCT-STSE
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHH-HHHHhcC-CCCE
Confidence            67889999999999998888876664  58999999999988 9999996 5664

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0081  Score=39.55  Aligned_cols=50  Identities=20%  Similarity=0.371  Sum_probs=34.6

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh----HHHHHHc-CCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP----HKLVARA-GVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~la~~~-~I~~~Pti  162 (162)
                      ++.|.-+||+.|++....|+    +  .++.+..+|++...    .+..++. |.+.+|.|
T Consensus         3 v~iyt~~~CPyC~~ak~~L~----~--~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I   57 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLD----R--KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQI   57 (80)
T ss_pred             EEEEECCCCchHHHHHHHHH----H--cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEE
Confidence            56688999999999876665    3  35666666666554    2255555 78999875

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=96.26  E-value=0.01  Score=46.81  Aligned_cols=30  Identities=23%  Similarity=0.416  Sum_probs=25.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAA  130 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~  130 (162)
                      .+++.+|+.|.-+.||.|+++.+.++++.+
T Consensus       105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~  134 (232)
T PRK10877        105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA  134 (232)
T ss_pred             CCCCEEEEEEECCCChHHHHHHHHHHHHhc
Confidence            457888999999999999999988887653

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.16  E-value=0.046  Score=36.39  Aligned_cols=64  Identities=13%  Similarity=0.199  Sum_probs=48.5

Q ss_pred             eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcc
Q 031285           84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV  158 (162)
Q Consensus        84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~  158 (162)
                      +.+++.+.++..+    ....+++|-|+.+++++   ....|.++++.+.+.+.|+.++   +.+ +++++++..
T Consensus         2 ~~i~s~~~l~~~~----~~~~~~vvg~f~~~~~~---~~~~f~~~A~~~r~~~~F~~~~---~~~-~~~~~~~~~   65 (97)
T cd02981           2 KELTSKEELEKFL----DKDDVVVVGFFKDEESE---EYKTFEKVAESLRDDYGFGHTS---DKE-VAKKLKVKP   65 (97)
T ss_pred             eecCCHHHHHHHh----ccCCeEEEEEECCCCcH---HHHHHHHHHHhcccCCeEEEEC---hHH-HHHHcCCCC
Confidence            4566778888877    78999999999999984   5678889999886678887665   334 666666643

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.04  E-value=0.025  Score=42.13  Aligned_cols=57  Identities=9%  Similarity=0.236  Sum_probs=44.9

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh--HHHHHHcCCc
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP--HKLVARAGVM  157 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~--~~la~~~~I~  157 (162)
                      ..|++||++|| ..|++.|-.+.-.|.....+++ -++.++.|..|...  ..+++++++.
T Consensus        28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~   88 (157)
T COG1225          28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT   88 (157)
T ss_pred             hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence            56889999999 8899999999999999999984 36899999886543  1255555554

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.029  Score=38.93  Aligned_cols=61  Identities=15%  Similarity=0.218  Sum_probs=39.5

Q ss_pred             HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHc----CCccccc
Q 031285           91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA----GVMVSLM  161 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~----~I~~~Pt  161 (162)
                      ...+.+     ...+|| .|.-+||+.|+++.-.|..    ++...+++.+|-+.+..++.+.+    +-+.+|.
T Consensus         6 ~v~~~i-----~~~~VV-ifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~   70 (104)
T KOG1752|consen    6 KVRKMI-----SENPVV-IFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPN   70 (104)
T ss_pred             HHHHHh-----hcCCEE-EEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCE
Confidence            345555     344444 4899999999997655544    65677888888887664344433    3455664

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=95.87  E-value=0.013  Score=45.18  Aligned_cols=42  Identities=10%  Similarity=0.346  Sum_probs=35.5

Q ss_pred             CCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECC
Q 031285          103 DESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVN  144 (162)
Q Consensus       103 ~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d  144 (162)
                      +++.||.|+.-.|++|+.+.+.+   +.+.+.+.+++.++.+.+.
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~   81 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVE   81 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEeccc
Confidence            56789999999999999999876   7888888778888776653

>PRK10824 glutaredoxin-4; Provisional

Probab=95.84  E-value=0.037  Score=39.14  Aligned_cols=62  Identities=18%  Similarity=0.167  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEec----CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMA----SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a----~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      +..++.+    ++ .+|+|.-.+    |||+.|++....|.++.      +.+..+|++.+++   .+.+.-|...+|.|
T Consensus         6 ~~v~~~I----~~-~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQI   74 (115)
T PRK10824          6 EKIQRQI----AE-NPILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQL   74 (115)
T ss_pred             HHHHHHH----hc-CCEEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence            3455566    44 445554443    69999999886665542      3344456666654   13333455666643

>PRK10638 glutaredoxin 3; Provisional

Probab=95.80  E-value=0.0079  Score=39.48  Aligned_cols=50  Identities=16%  Similarity=0.334  Sum_probs=34.5

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      ++.|..+||+.|+...-.|++.      ++.+..+|++...+   ++.+..+...+|.|
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i   56 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI   56 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence            5567789999999988666642      45555677776653   24555677788864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.75  E-value=0.04  Score=48.63  Aligned_cols=70  Identities=11%  Similarity=0.105  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ...+.+.+..  -.+.+.|+.|+.+-|..|..+...++++++.. +++.+...|...+.+ ++++|+|+..|++
T Consensus       354 ~~~l~~~~~~--l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s-~~i~~~~~~~~~~~~-~~~~~~v~~~P~~  423 (555)
T TIGR03143       354 RQQLVGIFGR--LENPVTLLLFLDGSNEKSAELQSFLGEFASLS-EKLNSEAVNRGEEPE-SETLPKITKLPTV  423 (555)
T ss_pred             HHHHHHHHHh--cCCCEEEEEEECCCchhhHHHHHHHHHHHhcC-CcEEEEEeccccchh-hHhhcCCCcCCEE
Confidence            3456677753  45666788899999999999999999999665 889998889888877 9999999999975

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=95.59  E-value=0.05  Score=37.94  Aligned_cols=66  Identities=14%  Similarity=0.103  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHH---hCCCeEEEEEECCCChHHHHHHcCCcc--cccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAAD---YHPRLRFYNVDVNAVPHKLVARAGVMV--SLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~---~~~~v~~~~vd~d~~~~~la~~~~I~~--~Pti  162 (162)
                      ++.....    ..+.+..+.||  --..-..+...+.+++++   +.+++.|+.+|.+.... .++.||+..  +|.+
T Consensus         7 e~~~~~~----~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~-~~~~fgl~~~~~P~i   77 (111)
T cd03072           7 ENAEELT----EEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRH-PLLHLGKTPADLPVI   77 (111)
T ss_pred             ccHHHHh----cCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh-HHHHcCCCHhHCCEE
Confidence            4455666    66777776777  222336778899999999   98889999999999887 899999987  7764

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=95.56  E-value=0.028  Score=44.80  Aligned_cols=39  Identities=8%  Similarity=0.226  Sum_probs=29.2

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEE
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNV  141 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~v  141 (162)
                      .+++.+|+.|.-+.|+.|+++.+.+.++.+.  +++.+..+
T Consensus       115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~i  153 (251)
T PRK11657        115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHI  153 (251)
T ss_pred             CCCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEE
Confidence            3567789999999999999999888776553  34554444

>PTZ00062 glutaredoxin; Provisional

Probab=95.44  E-value=0.061  Score=41.73  Aligned_cols=61  Identities=11%  Similarity=0.221  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhcCCCeEEEEEe----cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWM----ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~----a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      .+++++    ++ .+|+|...    .|||+.|++....|++    +  ++.+..+|+++..+   .+.+.-|...+|.|
T Consensus       105 ~v~~li----~~-~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~----~--~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqV  172 (204)
T PTZ00062        105 KIERLI----RN-HKILLFMKGSKTFPFCRFSNAVVNMLNS----S--GVKYETYNIFEDPDLREELKVYSNWPTYPQL  172 (204)
T ss_pred             HHHHHH----hc-CCEEEEEccCCCCCCChhHHHHHHHHHH----c--CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeE
Confidence            345555    44 44455333    3799999998766653    2  46666788877654   13333466666653

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=95.05  E-value=0.035  Score=43.94  Aligned_cols=64  Identities=9%  Similarity=0.218  Sum_probs=50.3

Q ss_pred             CCCCcCceecCCHH--HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285           77 APVSIPLTPIGSES--QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN  144 (162)
Q Consensus        77 ~~~~~~~~~i~~~~--~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d  144 (162)
                      .+++..+..+++..  .+-+..    +.++|+|++|.+-.|++-+.-...|++++++|.+.+.|+.|-+.
T Consensus        78 ~APns~vv~l~g~~~~~ildf~----~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~  143 (237)
T PF00837_consen   78 PAPNSPVVTLDGQRSCRILDFA----KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIE  143 (237)
T ss_pred             CCCCCceEeeCCCcceeHHHhc----cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHh
Confidence            35566677776443  455666    78999999999999999999999999999999666667766553

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.00  E-value=0.041  Score=49.37  Aligned_cols=62  Identities=18%  Similarity=0.253  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHh-H--HHHHHHhCCCeEEEEEECCCChHHHHHHc
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPK-L--EKLAADYHPRLRFYNVDVNAVPHKLVARA  154 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~d~~~~~la~~~  154 (162)
                      +.+.|...-    ..+||+++....+||..|..|... |  .++++-+...+.-+|||.++-|+ +-+-|
T Consensus        32 ~~eAf~~A~----~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPD-vD~~Y   96 (667)
T COG1331          32 GEEAFAKAK----EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPD-VDSLY   96 (667)
T ss_pred             CHHHHHHHH----HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccC-HHHHH
Confidence            445555555    889999999999999999987643 2  35666665668999999999887 55544

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=94.78  E-value=0.18  Score=32.65  Aligned_cols=55  Identities=13%  Similarity=0.208  Sum_probs=45.2

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..|-+.--+..+.....+.++.+++ ++.+.+--||+.++++ +|+.++|-.+||+
T Consensus         4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~-lAe~~~ivAtPtL   59 (72)
T cd02978           4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQ-LAEEDKIVATPTL   59 (72)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh-HHhhCCEEEechh
Confidence            44455555577777788888888887 5679999999999999 9999999999985

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=94.62  E-value=0.37  Score=34.54  Aligned_cols=76  Identities=14%  Similarity=0.232  Sum_probs=55.4

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecC--CChh-h-hhhhHhHHHHHHHhCCC-eEEEEEECCCChHHHHHHcCC
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMAS--WCRK-C-IYLKPKLEKLAADYHPR-LRFYNVDVNAVPHKLVARAGV  156 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~--WC~~-C-~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~~~la~~~~I  156 (162)
                      ++.++++.+.+++.=    ..++.-+|-|.-.  -|.+ + ......+.+++++|.++ +.|+.+|.+.... +.+.|||
T Consensus         3 ~~~~l~~~~~~~~~C----~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~-~~~~fgl   77 (130)
T cd02983           3 EIIELTSEDVFEETC----EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD-LEEALNI   77 (130)
T ss_pred             ceEEecCHHHHHhhc----cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH-HHHHcCC
Confidence            466677777777665    4456666666421  1222 3 35678899999999888 9999999999988 9999999


Q ss_pred             cc--cccC
Q 031285          157 MV--SLMI  162 (162)
Q Consensus       157 ~~--~Pti  162 (162)
                      ..  +|++
T Consensus        78 ~~~~~P~v   85 (130)
T cd02983          78 GGFGYPAM   85 (130)
T ss_pred             CccCCCEE
Confidence            54  7864

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.49  E-value=0.076  Score=43.61  Aligned_cols=77  Identities=16%  Similarity=0.380  Sum_probs=61.9

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecC----CChhhhhhhHhHHHHHHHh---C---C--CeEEEEEECCCChHHH
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMAS----WCRKCIYLKPKLEKLAADY---H---P--RLRFYNVDVNAVPHKL  150 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~----WC~~C~~~~p~l~~l~~~~---~---~--~v~~~~vd~d~~~~~l  150 (162)
                      +..+ +.+.|...+... -.+--++|+|.|.    .|.-|+.+...++-++..+   .   +  ++=|..||.++.++ +
T Consensus        42 VI~~-n~d~~~~~v~~~-prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~-~  118 (331)
T KOG2603|consen   42 VIRM-NDDKFSKFVRPP-PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ-V  118 (331)
T ss_pred             eEEe-cCcchhhhccCC-CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH-H
Confidence            4444 446788888643 5677789999974    7999999999999998776   1   2  57789999999999 9


Q ss_pred             HHHcCCcccccC
Q 031285          151 VARAGVMVSLMI  162 (162)
Q Consensus       151 a~~~~I~~~Pti  162 (162)
                      .+.+++..+|++
T Consensus       119 Fq~l~ln~~P~l  130 (331)
T KOG2603|consen  119 FQQLNLNNVPHL  130 (331)
T ss_pred             HHHhcccCCCeE
Confidence            999999999975

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=94.47  E-value=0.14  Score=39.76  Aligned_cols=64  Identities=19%  Similarity=0.307  Sum_probs=51.6

Q ss_pred             CCcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285           79 VSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA  145 (162)
Q Consensus        79 ~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~  145 (162)
                      .-.++.+|...+...++ ..| ..+-.|||..|...-+.|+-+...|+.++..| +.++|+++-...
T Consensus        89 kfG~V~~ISg~dyv~EV-T~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-p~iKFVki~at~  152 (240)
T KOG3170|consen   89 KFGEVFPISGPDYVKEV-TKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-PQIKFVKIPATT  152 (240)
T ss_pred             cccceeeccchHHHHHH-Hhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcC-CcceEEeccccc
Confidence            34467778665544444 444 78999999999999999999999999999999 999999986543

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=94.17  E-value=0.27  Score=33.01  Aligned_cols=58  Identities=12%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             CeEEEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          104 ESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       104 ~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ..++=.|.|.--+..+.....+.++.+++ ++.+.+--||+.++|+ +|+.++|-.+||+
T Consensus         3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~-lAE~~~IvATPtL   61 (87)
T TIGR02654         3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQ-LAEEDKILATPTL   61 (87)
T ss_pred             eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCEEEecHH
Confidence            34556677888888888888888988877 5568888999999999 9999999999984

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>PRK09301 circadian clock protein KaiB; Provisional

Probab=94.02  E-value=0.28  Score=33.96  Aligned_cols=60  Identities=10%  Similarity=0.156  Sum_probs=51.1

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++..++=.|.|.--+..+.....+.++.+++ .+.+.+--||+.++|+ +|+.++|-.+||+
T Consensus         4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPe-lAE~~~IvATPTL   64 (103)
T PRK09301          4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQ-LAEEDKILATPTL   64 (103)
T ss_pred             CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-HHhHCCeEEecHH
Confidence            3456777778888888888888999988877 5568888999999999 9999999999984

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=93.94  E-value=0.16  Score=35.41  Aligned_cols=46  Identities=20%  Similarity=0.354  Sum_probs=38.5

Q ss_pred             hhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChHHHHHHcCCcc----cccC
Q 031285          116 RKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGVMV----SLMI  162 (162)
Q Consensus       116 ~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~la~~~~I~~----~Pti  162 (162)
                      ..-......+.++++++. +++.|+.+|.+.... .++.||++.    .|.+
T Consensus        31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~-~l~~fgl~~~~~~~P~~   81 (111)
T cd03073          31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH-ELEEFGLDFSGGEKPVV   81 (111)
T ss_pred             hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH-HHHHcCCCcccCCCCEE
Confidence            344567889999999998 699999999998877 889999985    7753

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=93.74  E-value=0.093  Score=33.02  Aligned_cols=51  Identities=12%  Similarity=0.174  Sum_probs=32.7

Q ss_pred             EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.|+.+||+.|++..-.+++.    +-.+.++.+|......++.+......+|++
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~----gl~~e~~~v~~~~~~~~~~~~np~~~vP~L   52 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLA----GITVELREVELKNKPAEMLAASPKGTVPVL   52 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHc----CCCcEEEEeCCCCCCHHHHHHCCCCCCCEE
Confidence            357789999999876444433    234677777765443336666666777753

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=93.03  E-value=0.32  Score=38.16  Aligned_cols=81  Identities=19%  Similarity=0.251  Sum_probs=65.8

Q ss_pred             CCCcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCc
Q 031285           78 PVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM  157 (162)
Q Consensus        78 ~~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~  157 (162)
                      |.-.-+.++++...|.+.+... .+.-.++|..|-+.-..|-++...+.=|+.+| +.++|.++-...- . ...+|...
T Consensus       135 p~~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~-g-as~~F~~n  210 (273)
T KOG3171|consen  135 PRYGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNT-G-ASDRFSLN  210 (273)
T ss_pred             CccceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeeccc-c-chhhhccc
Confidence            3344577888989999999642 25567889999999999999999999999999 9999999976654 3 47888888


Q ss_pred             ccccC
Q 031285          158 VSLMI  162 (162)
Q Consensus       158 ~~Pti  162 (162)
                      ++|++
T Consensus       211 ~lP~L  215 (273)
T KOG3171|consen  211 VLPTL  215 (273)
T ss_pred             CCceE
Confidence            88874

>PHA03075 glutaredoxin-like protein; Provisional

Probab=93.01  E-value=0.14  Score=36.20  Aligned_cols=36  Identities=19%  Similarity=0.539  Sum_probs=29.2

Q ss_pred             CeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC
Q 031285          104 ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV  143 (162)
Q Consensus       104 ~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~  143 (162)
                      |.++|.|.-|.|+-|......++++..+|    .+..||+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVNI   37 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEY----DILRVNI   37 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEEe
Confidence            56899999999999999988887777665    5666665

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=92.59  E-value=0.11  Score=44.44  Aligned_cols=21  Identities=14%  Similarity=0.311  Sum_probs=16.6

Q ss_pred             EEEEecCCChhhhhhhHhHHH
Q 031285          107 IIVWMASWCRKCIYLKPKLEK  127 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~  127 (162)
                      |+.|..+||++|++....|++
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~   24 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGA   24 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHH
Confidence            667899999999988655543

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=92.50  E-value=0.46  Score=39.78  Aligned_cols=69  Identities=19%  Similarity=0.206  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHh------HHHHHHHh--CCCeEEEEEECCCChHHHHHHcCCccc
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPK------LEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~------l~~l~~~~--~~~v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      +..+|.+++    ++...++|+||.+-- .-+.....      +-+|+.+.  ..++.|+.||..+... +|+++|+...
T Consensus        40 neKNfk~~l----Kkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~k-lAKKLgv~E~  113 (383)
T PF01216_consen   40 NEKNFKRAL----KKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAK-LAKKLGVEEE  113 (383)
T ss_dssp             -TTTHHHHH----HH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHH-HHHHHT--ST
T ss_pred             chhHHHHHH----HhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHH-HHHhcCcccc
Confidence            668999999    778888999998763 33333222      23444444  3579999999999988 9999999987


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      ++|
T Consensus       114 ~Si  116 (383)
T PF01216_consen  114 GSI  116 (383)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            764

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=91.62  E-value=0.16  Score=35.44  Aligned_cols=73  Identities=18%  Similarity=0.132  Sum_probs=48.1

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhh---HhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLK---PKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~---p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      +..++ .+++++.+    ..+...++ |++.-|..+....   -.+-+|.+.+++.+....++.+.... ++.+||+...
T Consensus        11 ~~~vd-~~~ld~~l----~~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~-L~~r~gv~~~   83 (107)
T PF07449_consen   11 WPRVD-ADTLDAFL----AAPGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERA-LAARFGVRRW   83 (107)
T ss_dssp             EEEE--CCCHHHHH----HCCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHH-HHHHHT-TSS
T ss_pred             Ceeec-hhhHHHHH----hCCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHH-HHHHhCCccC
Confidence            34443 46788888    45555554 5565555554433   46778888887778888888555555 9999999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      |++
T Consensus        84 PaL   86 (107)
T PF07449_consen   84 PAL   86 (107)
T ss_dssp             SEE
T ss_pred             CeE
Confidence            974

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=90.69  E-value=2.1  Score=29.68  Aligned_cols=69  Identities=16%  Similarity=0.191  Sum_probs=50.1

Q ss_pred             eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh-HHHHHHcCCc
Q 031285           84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-HKLVARAGVM  157 (162)
Q Consensus        84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~la~~~~I~  157 (162)
                      ..|.+..+|..++    .....|+|.|..+-= .--.....+.+++++..+.-.++.||+.... ..||+++.|.
T Consensus         4 e~i~d~KdfKKLL----RTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~   73 (112)
T cd03067           4 EDISDHKDFKKLL----RTRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVD   73 (112)
T ss_pred             ccccchHHHHHHH----hhcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccC
Confidence            4567888999999    446667776765432 3334455778888888788899999998743 2399999887

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=90.59  E-value=0.45  Score=35.78  Aligned_cols=33  Identities=24%  Similarity=0.631  Sum_probs=25.6

Q ss_pred             EEecCCChhhhhhhHhHHHHHHHhCCCeEEEEE
Q 031285          109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNV  141 (162)
Q Consensus       109 ~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~v  141 (162)
                      .|.-|+|+.|-...|.+.++.++|+.++.+-.|
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i   34 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI   34 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence            588999999999999999999999766655444

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=89.82  E-value=1.6  Score=32.67  Aligned_cols=46  Identities=15%  Similarity=0.270  Sum_probs=35.5

Q ss_pred             cCCCeEEEEEecCCC-hhhhhhhHhHHHHHHHh---CCCeEEEEEECCCC
Q 031285          101 QLDESVIIVWMASWC-RKCIYLKPKLEKLAADY---HPRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC-~~C~~~~p~l~~l~~~~---~~~v~~~~vd~d~~  146 (162)
                      -.|+++||.|.-+-| ..|-.....|.++.+++   +.++.++.|.+|-.
T Consensus        50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~   99 (174)
T PF02630_consen   50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE   99 (174)
T ss_dssp             GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred             hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence            469999999999999 57887777887777766   24688888888754

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=89.52  E-value=0.36  Score=32.91  Aligned_cols=32  Identities=13%  Similarity=0.122  Sum_probs=21.4

Q ss_pred             EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285          108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA  145 (162)
Q Consensus       108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~  145 (162)
                      ..|+.++|+.|+.....|++    .  ++.+-.+|+.+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~----~--~i~~~~idi~~   33 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEE----H--GIEYEFIDYLK   33 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHH----c--CCCcEEEeecc
Confidence            46889999999998655543    3  44455556544

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=89.49  E-value=0.45  Score=32.84  Aligned_cols=33  Identities=12%  Similarity=0.067  Sum_probs=21.6

Q ss_pred             EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      ..|+.+||+.|++....|+    ++  ++.+-.+|+.+.
T Consensus         2 ~iy~~~~C~~crka~~~L~----~~--~i~~~~~di~~~   34 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLE----AR--GVAYTFHDYRKD   34 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHH----Hc--CCCeEEEecccC
Confidence            4688999999999764444    33  444445555443

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria

Probab=89.25  E-value=0.29  Score=32.53  Aligned_cols=50  Identities=18%  Similarity=0.254  Sum_probs=40.9

Q ss_pred             cCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          112 ASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       112 a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.--.........++.+.+++ ++.+.+--||+.++++ +|+.++|-.+||+
T Consensus         5 ~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~-lAe~~~ivAtPtL   55 (82)
T PF07689_consen    5 AGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPE-LAEEDRIVATPTL   55 (82)
T ss_dssp             SSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHS-HHTTTEEECHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHh-HHhHCCeeecceE
Confidence            344445567777888888886 5679999999999999 9999999999974

Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=89.11  E-value=2.9  Score=29.97  Aligned_cols=68  Identities=21%  Similarity=0.180  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHH-HHh--CCCeEEEEEECC-----CChHHHHHHcCC--c
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLA-ADY--HPRLRFYNVDVN-----AVPHKLVARAGV--M  157 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~-~~~--~~~v~~~~vd~d-----~~~~~la~~~~I--~  157 (162)
                      +.-+|+.++    .+.+.+||.|=...  |-=.-.-.|.+++ +.+  .+++-++.|.+.     .|.+ |+++|+|  +
T Consensus        10 D~~tFdKvi----~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~-Laery~i~ke   82 (126)
T PF07912_consen   10 DELTFDKVI----PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENME-LAERYKIDKE   82 (126)
T ss_dssp             STTHHHHHG----GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHH-HHHHTT-SCC
T ss_pred             cceehhhee----ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHH-HHHHhCCCcc
Confidence            345899999    78899999997655  4445566788999 555  356888888774     3445 9999999  5


Q ss_pred             ccccC
Q 031285          158 VSLMI  162 (162)
Q Consensus       158 ~~Pti  162 (162)
                      .+|.|
T Consensus        83 ~fPv~   87 (126)
T PF07912_consen   83 DFPVI   87 (126)
T ss_dssp             C-SEE
T ss_pred             cCCEE
Confidence            56753

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=88.43  E-value=0.56  Score=29.18  Aligned_cols=50  Identities=10%  Similarity=0.011  Sum_probs=30.0

Q ss_pred             EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285          108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus       108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      ..|+.++|+.|++..-.+++..    -.+....+|......++.+......+|+
T Consensus         2 ~ly~~~~~~~~~~v~~~l~~~g----i~~~~~~v~~~~~~~~~~~~~p~~~vP~   51 (73)
T cd03059           2 TLYSGPDDVYSHRVRIVLAEKG----VSVEIIDVDPDNPPEDLAELNPYGTVPT   51 (73)
T ss_pred             EEEECCCChhHHHHHHHHHHcC----CccEEEEcCCCCCCHHHHhhCCCCCCCE
Confidence            4577899999999865554332    2345555665544332555555556664

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=88.12  E-value=0.096  Score=42.97  Aligned_cols=68  Identities=16%  Similarity=0.375  Sum_probs=47.7

Q ss_pred             HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC-CCChHHHHHHcCCcccccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV-NAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-d~~~~~la~~~~I~~~Pti  162 (162)
                      ...+.+..  ++...+=+.||++||+.-+.+.|.++-....+ ..+....++- ...+. +.++|++.+.|++
T Consensus        66 ~l~~~ih~--n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~-~~i~h~~vee~~~lps-v~s~~~~~~~ps~  134 (319)
T KOG2640|consen   66 VLLDAIHG--NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLF-SSIQHFAVEESQALPS-VFSSYGIHSEPSN  134 (319)
T ss_pred             HHHHhhcc--ccCCcccccchhcccCcccccCcccchhhhhc-cccccccHHHHhhccc-chhccccccCCcc
Confidence            34455532  44677889999999999999999999888877 3333333322 12345 7889999998875

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=87.51  E-value=1.6  Score=32.15  Aligned_cols=50  Identities=20%  Similarity=0.365  Sum_probs=32.3

Q ss_pred             EEEEecC------CChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCC----cccccC
Q 031285          107 IIVWMAS------WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGV----MVSLMI  162 (162)
Q Consensus       107 lV~F~a~------WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I----~~~Pti  162 (162)
                      ||.|.++      ||+.|+.....|+.    +  ++.+-.+|++...+   +|.+.++-    ..+|.|
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~----~--~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV   64 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILES----F--RVKFDERDVSMDSGFREELRELLGAELKAVSLPRV   64 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHH----C--CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE
Confidence            3456666      99999988766653    3  57778889987654   24444454    566643

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=87.46  E-value=1.1  Score=32.14  Aligned_cols=35  Identities=20%  Similarity=0.442  Sum_probs=23.3

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP  147 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~  147 (162)
                      +..|+.+||+.|++....|+    ++  ++.+-.+|+.+.+
T Consensus         2 i~iY~~~~C~~C~ka~~~L~----~~--gi~~~~idi~~~~   36 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLE----EH--DIPFTERNIFSSP   36 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHH----Hc--CCCcEEeeccCCh
Confidence            45678999999999764443    33  4556666665544

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=87.09  E-value=0.78  Score=31.80  Aligned_cols=33  Identities=15%  Similarity=0.290  Sum_probs=22.4

Q ss_pred             EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      ..|+.++|+.|++....|+    ++  ++.|-.+|+..+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~----~~--~i~~~~idi~~~   34 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLD----EH--GVDYTAIDIVEE   34 (111)
T ss_pred             EEEECCCCHHHHHHHHHHH----Hc--CCceEEecccCC
Confidence            4578999999999875554    33  455666666544

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=86.52  E-value=0.93  Score=27.98  Aligned_cols=50  Identities=12%  Similarity=0.117  Sum_probs=30.4

Q ss_pred             EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC----ChHHHHHHcCCcccccC
Q 031285          108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA----VPHKLVARAGVMVSLMI  162 (162)
Q Consensus       108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~la~~~~I~~~Pti  162 (162)
                      ..|+.++|+.|++.+-.++...    -.+....+|...    .++ +.+......+|++
T Consensus         2 ~Ly~~~~s~~~~~~~~~L~~~~----l~~~~~~v~~~~~~~~~~~-~~~~~p~~~vP~l   55 (74)
T cd03051           2 KLYDSPTAPNPRRVRIFLAEKG----IDVPLVTVDLAAGEQRSPE-FLAKNPAGTVPVL   55 (74)
T ss_pred             EEEeCCCCcchHHHHHHHHHcC----CCceEEEeecccCccCCHH-HHhhCCCCCCCEE
Confidence            3577889999999876665443    234555666532    223 5555555666653

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=86.50  E-value=1.5  Score=30.53  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=23.8

Q ss_pred             EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh
Q 031285          108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP  147 (162)
Q Consensus       108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~  147 (162)
                      ..|+.++|+.|++....|++    +  ++.+-.+|+.+.+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~----~--~i~~~~idi~~~~   35 (117)
T TIGR01617         2 KVYGSPNCTTCKKARRWLEA----N--GIEYQFIDIGEDG   35 (117)
T ss_pred             EEEeCCCCHHHHHHHHHHHH----c--CCceEEEecCCCh
Confidence            35789999999998755553    3  4566667776543

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=83.51  E-value=1.2  Score=26.56  Aligned_cols=50  Identities=10%  Similarity=0.107  Sum_probs=29.0

Q ss_pred             EEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH-HHHHHcCCcccccC
Q 031285          109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH-KLVARAGVMVSLMI  162 (162)
Q Consensus       109 ~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~-~la~~~~I~~~Pti  162 (162)
                      .|+.++|+.|.+..-.++..    +-.+....++.+.... .+.+..+-..+|++
T Consensus         3 ly~~~~~~~~~~~~~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l   53 (71)
T cd00570           3 LYYFPGSPRSLRVRLALEEK----GLPYELVPVDLGEGEQEEFLALNPLGKVPVL   53 (71)
T ss_pred             EEeCCCCccHHHHHHHHHHc----CCCcEEEEeCCCCCCCHHHHhcCCCCCCCEE
Confidence            46788999999876555543    2334555565543322 13444556666653

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>PRK12559 transcriptional regulator Spx; Provisional

Probab=82.51  E-value=2.1  Score=30.75  Aligned_cols=34  Identities=15%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      +..|+.++|+.|+.....|+    ++  ++.+-.+|+.++
T Consensus         2 i~iY~~~~C~~crkA~~~L~----~~--gi~~~~~di~~~   35 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLE----EN--QIDYTEKNIVSN   35 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHH----Hc--CCCeEEEEeeCC
Confidence            45688999999999764443    33  344444555433

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=82.43  E-value=2.1  Score=31.83  Aligned_cols=30  Identities=27%  Similarity=0.586  Sum_probs=25.7

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCe
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRL  136 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v  136 (162)
                      |..|+-+.|+.|....+.++++.+++++++
T Consensus         3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~   32 (193)
T cd03025           3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGI   32 (193)
T ss_pred             EEEEECCCCchhhCchHHHHHHHHHhCCCc
Confidence            567889999999999999999999984343

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=82.35  E-value=1.7  Score=27.05  Aligned_cols=49  Identities=10%  Similarity=0.054  Sum_probs=30.0

Q ss_pred             EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC----hHHHHHHcCCccccc
Q 031285          108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV----PHKLVARAGVMVSLM  161 (162)
Q Consensus       108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~la~~~~I~~~Pt  161 (162)
                      ..|+.++|+.|++..-.+++.    +-.+....+|....    ++ +.+......+|+
T Consensus         2 ~Ly~~~~~~~~~~v~~~l~~~----gi~~e~~~i~~~~~~~~~~~-~~~~~p~~~vP~   54 (74)
T cd03045           2 DLYYLPGSPPCRAVLLTAKAL----GLELNLKEVNLMKGEHLKPE-FLKLNPQHTVPT   54 (74)
T ss_pred             EEEeCCCCCcHHHHHHHHHHc----CCCCEEEEecCccCCcCCHH-HHhhCcCCCCCE
Confidence            357899999999776544443    33456666765332    33 555555556665

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=81.31  E-value=1.3  Score=27.99  Aligned_cols=20  Identities=20%  Similarity=0.443  Sum_probs=15.0

Q ss_pred             EEEEecCCChhhhhhhHhHH
Q 031285          107 IIVWMASWCRKCIYLKPKLE  126 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~  126 (162)
                      +..|+.++|+.|++.+-.+.
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~   21 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLD   21 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHH
Confidence            34577899999999875444

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=81.11  E-value=2.9  Score=29.04  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=22.3

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      +..|+.++|+.|++....|++    +  ++.+-.+|+.+.
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~----~--gi~~~~idi~~~   35 (115)
T cd03032           2 IKLYTSPSCSSCRKAKQWLEE----H--QIPFEERNLFKQ   35 (115)
T ss_pred             EEEEeCCCCHHHHHHHHHHHH----C--CCceEEEecCCC
Confidence            345778999999997755543    3  445555666544

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=80.59  E-value=1.4  Score=27.41  Aligned_cols=48  Identities=6%  Similarity=0.082  Sum_probs=25.3

Q ss_pred             EEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285          109 VWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus       109 ~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .++.++|+.|++.+-.+....-    .+..+.++.+.... ..+..+-..+|.
T Consensus         3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~-~~~~~~~~~vP~   50 (71)
T cd03037           3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEAT-PIRMIGAKQVPI   50 (71)
T ss_pred             eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHH-HHHhcCCCccCE
Confidence            4678899999987655543322    23444444332222 233334445564

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=80.46  E-value=2.7  Score=27.61  Aligned_cols=52  Identities=10%  Similarity=0.128  Sum_probs=31.4

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..|+.+.|+.|++..-.++.    .+-.+.++.+|.....+.+.+......+|.+
T Consensus        19 ~~Ly~~~~sp~~~kv~~~L~~----~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL   70 (89)
T cd03055          19 IRLYSMRFCPYAQRARLVLAA----KNIPHEVININLKDKPDWFLEKNPQGKVPAL   70 (89)
T ss_pred             EEEEeCCCCchHHHHHHHHHH----cCCCCeEEEeCCCCCcHHHHhhCCCCCcCEE
Confidence            344668889999987544443    3334677777765443325555566667753

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		4e-05
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		4e-05
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		1e-04
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		1e-04
3f3r_A	109	Crystal Structure Of Yeast Thioredoxin1-Glutathione		6e-04
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		7e-04
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		7e-04
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		8e-04

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 83  LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
           +T   + S+FD  IA+    D+ V++ + A+WC  C  + P +EK +  Y P+  FY +D
Sbjct: 2   VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLD 56
Query: 143 VN 144
           V+
Sbjct: 57  VD 58

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 83  LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
           +T   + S+FD  IA+    D+ V++ + A+WC  C  + P +EK +  Y P+  FY +D
Sbjct: 8   VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLD 62
Query: 143 VN 144
           V+
Sbjct: 63  VD 64

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 83  LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
           +T + S S++D  +A   +L   V++ + A+WC  C  + P +EK A  Y     FY +D
Sbjct: 2   VTQLKSASEYDSALASGDKL---VVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLD 57
Query: 143 VNAV 146
           V+ V
Sbjct: 58  VDEV 61

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 83  LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
           +T + S S++D  +A   +L   V++ + A+WC  C  + P +EK A  Y     FY +D
Sbjct: 9   VTQLKSASEYDSALASGDKL---VVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLD 64
Query: 143 VNAV 146
           V+ V
Sbjct: 65  VDEV 68

>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 83  LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
           +T   + S+FD  IA+    D+ V++ + A+WC     + P +EK +  Y P+  FY +D
Sbjct: 8   VTQFKTASEFDSAIAQ----DKLVVVDFYATWCGPSKMIAPMIEKFSEQY-PQADFYKLD 62
Query: 143 VN 144
           V+
Sbjct: 63  VD 64

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           +++ FD  +    QL     + + A+WC  C  + P LE+LAADY  +     +DV+  P
Sbjct: 9   TDADFDSKVESGVQL-----VDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENP 63

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           +++ FD  +    QL    +  W A+WC  C  + P LE+LAADY  +     +DV+  P
Sbjct: 10  TDADFDSKVESGVQL----VDFW-ATWCGTCKMIAPVLEELAADYEGKADILKLDVDENP 64

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 104 ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157
           E  ++ + A WC  C+ L P +E+LA DY P++ F  ++ +  P  + AR GVM
Sbjct: 17  EIAVVDFWAEWCAPCLILAPIIEELAEDY-PQVGFGKLNSDENP-DIAARYGVM 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	5e-12
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	5e-11
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	7e-11
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	1e-10
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	1e-10
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	7e-10
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	9e-10
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	2e-09
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	3e-09
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	3e-09
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	1e-08
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	1e-08
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	2e-08
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	2e-08
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	3e-08
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	4e-08
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	5e-08
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	7e-08
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	8e-08
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	2e-07
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	2e-07
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	3e-07
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	2e-06
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	2e-06
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	5e-06
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	9e-06
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	1e-05
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	1e-05
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	2e-05
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	2e-05
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	2e-05
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	3e-05
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	3e-05
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	3e-05
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	6e-05
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	6e-05
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	7e-05
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	8e-05
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	8e-05
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	9e-05
2l57_A	126	Uncharacterized protein; structural genomics, unkn	1e-04
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	2e-04
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	2e-04
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	2e-04
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-04
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-04
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-04
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	4e-04
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	5e-04
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	7e-04
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	7e-04
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	8e-04

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 59.0 bits (143), Expect = 5e-12
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 63  GSIKELNEDDDDDHAPVSIP---LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCI 119
             + + N D DDD   + +    +  I ++ ++D+ ++EA +  + V+  + A WC    
Sbjct: 3   LCLAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSR 62

Query: 120 YLKPKLEKLAADYHPRLRFYNVDVNAVP 147
            + P   +L+ +Y P L F  +DV+ + 
Sbjct: 63  QIAPYYIELSENY-PSLMFLVIDVDELS 89

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 55.9 bits (135), Expect = 5e-11
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 71  DDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAA 130
             ++  A     +    ++ +FD  + +A++  + VII + ASWC  C ++ P   + A 
Sbjct: 4   AAEEGMAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK 63

Query: 131 DYHPRLRFYNVDVNAVPHKLVARAGVM 157
            + P   F  VDV+ +  ++  +  V 
Sbjct: 64  KF-PGAVFLKVDVDELK-EVAEKYNVE 88

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 55.4 bits (134), Expect = 7e-11
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
           I S++ +D  +A+ ++  + +++ + A+WC  C  + P  E L+ DY  ++ F  VDV+A
Sbjct: 7   IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA 66

Query: 146 VP 147
           V 
Sbjct: 67  VA 68

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 55.0 bits (133), Expect = 1e-10
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
             ++ +FD  +A  +   + VII + ASWC  C  + P   + A  + P   F  VDV+ 
Sbjct: 11  CHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKF-PGAIFLKVDVDE 69

Query: 146 VPHKLVARAGVM 157
           +   +     V 
Sbjct: 70  LK-DVAEAYNVE 80

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 84  TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143
             + S  Q+   I EA    + V+I + ASWC  C  + P    LA  + P   F  VDV
Sbjct: 15  ISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKF-PNAVFLKVDV 73

Query: 144 NAVPHKLVARAGVM 157
           + +   +  +  V 
Sbjct: 74  DELK-PIAEQFSVE 86

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 52.7 bits (127), Expect = 7e-10
 Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
             +  +    I E     + V++      C  C  +  K+  +  +Y   +    + +  
Sbjct: 5   FKTIEELATYIEE----QQLVLLFIKTENCGVCDVMLRKVNYVLENY-NYVEKIEILLQD 59

Query: 146 VPHKLVARAGVM 157
           +  ++  R  V 
Sbjct: 60  MQ-EIAGRYAVF 70

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 52.8 bits (127), Expect = 9e-10
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
             +   ++  + +A +    V++ + ASWC  C ++ P    LA    P + F  VD + 
Sbjct: 21  CHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL-PNVLFLKVDTDE 79

Query: 146 VPHKLVARAGVM 157
           +   + +   + 
Sbjct: 80  LK-SVASDWAIQ 90

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
           I S++ F   +  A   D+ V++ + A+WC     +KP    L+  Y   + F  VDV+ 
Sbjct: 16  IESKTAFQEALDAAG--DKLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDD 72

Query: 146 VP 147
             
Sbjct: 73  CQ 74

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 81  IPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYN 140
           + + P+GS+  F   ++ A       ++ +    C  C+ + P    ++  Y P+  F  
Sbjct: 1   VGVKPVGSDPDFQPELSGAG--SRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLE 57

Query: 141 VDVNAVP 147
           VDV+   
Sbjct: 58  VDVHQCQ 64

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 50.7 bits (122), Expect = 3e-09
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 84  TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143
             I S++ F   +  A   D+ V++ + A+WC  C  +KP    L+  Y   + F  VDV
Sbjct: 3   KQIESKTAFQEALDAAG--DKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDV 59

Query: 144 NAVP 147
           +   
Sbjct: 60  DDCQ 63

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 84  TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143
             +  ++  D  + +A    + V++ + A+WC  C  + PKL +L+  +   +    VDV
Sbjct: 3   YQVKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDV 60

Query: 144 NAVPHKLVARAGVM 157
           +     +     + 
Sbjct: 61  DECE-DIAMEYNIS 73

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
             +   +     + +   + +++ + ASWC  C  + P   +LA  + P + F  VDV+ 
Sbjct: 9   CHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF-PNVTFLKVDVDE 67

Query: 146 VP 147
           + 
Sbjct: 68  LK 69

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
           + + +  +++I E +     +++ + A WC  C  + PK+E LA +  P + F  VDV+ 
Sbjct: 4   LATAADLEKLINENK--GRLIVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVDVDQ 60

Query: 146 VPHKLVARAGVM 157
              +  A+  V 
Sbjct: 61  NE-EAAAKYSVT 71

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 84  TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143
             + S+++FD +I++    +E VI+ + A WC  C  + P  E+ +  Y  ++ F  VDV
Sbjct: 11  KIVTSQAEFDSIISQ----NELVIVDFFAEWCGPCKRIAPFYEECSKTY-TKMVFIKVDV 65

Query: 144 NAVPHKLVARAGVM 157
           + V  ++  +  + 
Sbjct: 66  DEVS-EVTEKENIT 78

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 49.2 bits (117), Expect = 3e-08
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 80  SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFY 139
           S  L  + S+ + D+ I      ++ +++ +       C+ L   L K ++D       Y
Sbjct: 2   SFLLPKLTSKKEVDQAIKSTA--EKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIY 59

Query: 140 NVDVNAVP 147
            VDV+   
Sbjct: 60  LVDVDQTA 67

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 47.7 bits (114), Expect = 4e-08
 Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 82  PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYN 140
           P+  I  + QF  +   A   D+ +++ +  SW   C  LK   E ++ +  +  + F +
Sbjct: 1   PVIEINDQEQFTYLTTTAAG-DKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLS 59

Query: 141 VDVNAVPHKLVARAGVM 157
           +D +    ++     + 
Sbjct: 60  IDADENS-EISELFEIS 75

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
           + +    ++V +  Q  + S++I + A WC+ C  +K   +     Y+  +   ++DV+ 
Sbjct: 25  LKNTGSLNQVFSSTQ--NSSIVIKFGAVWCKPCNKIKEYFKNQLNYYY--VTLVDIDVDI 80

Query: 146 VP 147
            P
Sbjct: 81  HP 82

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 48.3 bits (115), Expect = 7e-08
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
           +GS  QF+ ++         +++ + A W  +C  +   + +LA +  P++ F  ++   
Sbjct: 17  VGSAGQFEELLRLKA--KSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEG 73

Query: 146 VP 147
           VP
Sbjct: 74  VP 75

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 46.9 bits (112), Expect = 8e-08
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 84  TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143
           T   + S+FD  IA+    D+ V++ + A+WC  C  + P +EK +  Y P+  FY +DV
Sbjct: 9   TQFKTASEFDSAIAQ----DKLVVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLDV 63

Query: 144 NAVPHKLVARAGVM 157
           + +   +  +  V 
Sbjct: 64  DELG-DVAQKNEVS 76

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 84  TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143
             + S  QF  +++E    D   +  + A WC  C  ++  +EK+A ++ P ++F  VD 
Sbjct: 22  VDVYSVEQFRNIMSE----DILTVAWFTAVWCGPCKTIERPMEKIAYEF-PTVKFAKVDA 76

Query: 144 NAVPHKLVARAGVM 157
           +    ++V++  V+
Sbjct: 77  DNNS-EIVSKCRVL 89

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 12/72 (16%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
           +  +   + ++ + +  ++ V++ + A+WC  C  + P  ++L+  Y     F  VDV+ 
Sbjct: 18  LKQDGDLESLLEQHK--NKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDK 73

Query: 146 VPHKLVARAGVM 157
           +  +   +  + 
Sbjct: 74  LE-ETARKYNIS 84

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)

Query: 84  TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143
           T + + ++F  +I +    ++ ++I + A+WC  C  ++P L KL   Y P +RF   DV
Sbjct: 15  TKLTNLTEFRNLIKQ----NDKLVIDFYATWCGPCKMMQPHLTKLIQAY-PDVRFVKCDV 69

Query: 144 NAVPHKLVARAGVM 157
           +  P  +     V 
Sbjct: 70  DESP-DIAKECEVT 82

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           +ES   +V+ ++      V+  + +   + C+ L P LE LAA Y+ +     +D +A  
Sbjct: 13  NESNLQQVLEQSMTT--PVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQ 70

Query: 148 HKLVARAGV 156
             + A+ G+
Sbjct: 71  -MIAAQFGL 78

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           S +Q+   +  A++ D  VII    S    C+ +   L  LA  + P  +F    VN+  
Sbjct: 9   SGNQYVNEVTNAEE-DVWVIIHLYRSSIPMCLLVNQHLSLLARKF-PETKFVKAIVNSCI 66

Query: 148 HKL 150
              
Sbjct: 67  QHY 69

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 44.0 bits (103), Expect = 5e-06
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           +   FD+ I      + + ++ + A WC  C  L     K A      ++   V+ +   
Sbjct: 23  TPKSFDKAIHNT---NYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNK 79

Query: 148 HK-LVARAGV 156
           +K L A+  V
Sbjct: 80  NKALCAKYDV 89

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVN 144
           I S  QF +V       D+ V+I + A+WC  C  + P  EK++      ++ FY VDV+
Sbjct: 20  ISSYDQFKQVTGG----DKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD 75

Query: 145 AVPHKLVARAGVM 157
               ++    G+ 
Sbjct: 76  EQS-QIAQEVGIR 87

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           S +Q+   +  A++ D  V+I    S    C+ +   L  LA  + P  +F    VN+  
Sbjct: 16  SGNQYVNEVTNAEK-DLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFVKAIVNSCI 73

Query: 148 HKL 150
              
Sbjct: 74  EHY 76

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 83  LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
           +  + S  QF   I + Q+   ++++       + C  L   L  LAA+Y P ++F  + 
Sbjct: 114 VYELESGEQFLETIEKEQK-ITTIVVHIYEDGIKGCDALNSSLICLAAEY-PMVKFCKIK 171

Query: 143 VNAVPHKLVARAGVMV 158
            +        R    V
Sbjct: 172 ASNTG--AGDRFSSDV 185

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           +    D+++    Q D  ++I + A WC  C    P   + AA+   ++RF  V+  A P
Sbjct: 44  TAETLDKLL----QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEP 99

Query: 148 HKLVARAGVM 157
             L  R  + 
Sbjct: 100 -ALSTRFRIR 108

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           ++  F  ++  A   D+ V++     WC     + PK EKLA +Y   + F  +D N   
Sbjct: 11  NKDTFWPIVKAAG--DKPVVLDMFTQWCGPSKAMAPKYEKLAEEY-LDVIFLKLDCNQEN 67

Query: 148 HKLVARAGVM 157
             L    G+ 
Sbjct: 68  KTLAKELGIR 77

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 83  LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
           +  + +  QF   I + Q+   ++++       R C  L   LE LAA+Y P ++F  + 
Sbjct: 101 VYELETGEQFLETIEKEQK-VTTIVVNIYEDGVRGCDALNSSLECLAAEY-PMVKFCKIR 158

Query: 143 VNAVP 147
            +   
Sbjct: 159 ASNTG 163

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           ++  F  ++  A   D+ V++     WC  C  + PK EKLA +Y   + F  +D N   
Sbjct: 24  NKDTFWPIVKAAG--DKPVVLDMFTQWCGPCKAMAPKYEKLAEEY-LDVIFLKLDCNQEN 80

Query: 148 HKLVARAGVM 157
             L    G+ 
Sbjct: 81  KTLAKELGIR 90

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 87  GSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV 146
           G+       I EA  L   V++ + A+WC  C  L   L  +A      + F  VDV+  
Sbjct: 10  GTHEALLNRIKEAPGL---VLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKN 65

Query: 147 PHKLVARAGVM 157
                   GV 
Sbjct: 66  G-NAADAYGVS 75

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 92  FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNA 145
            D ++ +     + V++++ A WC  C  L P  ++LA  Y      +    +D   
Sbjct: 368 HDEIVNDP---KKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE 421

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 84  TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV 143
              G +       A A++ D  +++ + A WC  C  + P+ +  AA    ++R   +D 
Sbjct: 48  KVAGIDPAIL---ARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDT 104

Query: 144 NAVPHKLVARAGVM 157
            A P  +  R  + 
Sbjct: 105 QAHP-AVAGRHRIQ 117

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
           ++  F+  I++       +++ + A WC     L P+ E  A      +    VD
Sbjct: 7   TDDNFESRISDTGS-AGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVD 60

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 41.0 bits (95), Expect = 7e-05
 Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 7/121 (5%)

Query: 33  RILSISSSNITKSVNFRGKIDNVIRVTKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQF 92
            I +           F      + R  +             +     +     +     F
Sbjct: 303 AIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENF 362

Query: 93  DRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVD--VNAVPH 148
           D ++      ++ V+I + A WC  C  L+PK ++L       P +    +D   N VP 
Sbjct: 363 DEIVNNE---NKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPS 419

Query: 149 K 149
            
Sbjct: 420 P 420

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 8/73 (10%)

Query: 88  SESQFDRVIAEAQQLDESVIIV--WMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVN 144
             S  D  I       + VI++         +       + +L  ++     +    D+ 
Sbjct: 23  EASTVDDWIKRVG---DGVILLSSD-PRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE 78

Query: 145 AVPHKLVARAGVM 157
                +  R  V 
Sbjct: 79  QSE-AIGDRFNVR 90

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 39.3 bits (92), Expect = 8e-05
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 80  SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFY 139
           SI LTP      F+  + +        ++ + A WC  C    P+ E LA     ++R  
Sbjct: 5   SIDLTP----QTFNEKVLQG---KTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAG 57

Query: 140 NVDVNAVPHKLVARAGVM 157
            VD  A P +   +AG+ 
Sbjct: 58  KVDCQAYP-QTCQKAGIK 74

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 11/84 (13%)

Query: 76  HAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIV--WMASWCRKCIYLKPKLEKLAADYH 133
             P+   +     E  F + +         + +V  + A WC  C  + P LE+LA D+ 
Sbjct: 29  KTPLPWVVE--ADEKGFAQEV-----AGAPLTLVDFF-APWCGPCRLVSPILEELARDHA 80

Query: 134 PRLRFYNVDVNAVPHKLVARAGVM 157
            RL+   V+V+  P  L AR GV 
Sbjct: 81  GRLKVVKVNVDEHP-GLAARYGVR 103

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 97  AEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH-KLVARAG 155
            E  +     II++    C  C+ ++ +L  ++ +   +   Y   +    +  L  +  
Sbjct: 20  LEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYD 79

Query: 156 VM 157
             
Sbjct: 80  AN 81

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157
            I V+ +  C  C      +++   ++  ++    +D+     +     G+M
Sbjct: 4   NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDR-EKAIEYGLM 54

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
            +   +  +A  + L ++++     + C  C  ++  L+K  A   P++   +VD  A P
Sbjct: 5   RDITTEAGMAHFEGLSDAIVFFH-KNLCPHCKNMEKVLDKFGARA-PQVAISSVDSEARP 62

Query: 148 HKLVARAGVM 157
            +L+   G  
Sbjct: 63  -ELMKELGFE 71

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 10/92 (10%)

Query: 64  SIKELNEDDDDDHAPVSIPLTPIGSESQFDRVI--------AEAQQLDESVIIVWMASWC 115
            I E      +      +    +  +     V           A    ++V + + A WC
Sbjct: 220 RITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWC 279

Query: 116 RKCIYLKPKLEKLAADY--HPRLRFYNVDVNA 145
             C  L P  +KL   Y  H  +    +D  A
Sbjct: 280 GHCKQLAPIWDKLGETYKDHENIVIAKMDSTA 311

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 5/72 (6%)

Query: 82  PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNV 141
             +   +   F+  + + +      ++ + A W        P+ E LA     ++R    
Sbjct: 657 QASIDLTPQTFNEKVLQGKTH---WVVDFYAPWSGPSQNFAPEFELLARMIKGKVRA--G 711

Query: 142 DVNAVPHKLVAR 153
            V+   +    +
Sbjct: 712 KVDCQAYPQTCQ 723

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
            E  ++ + A W      L P+L K +   + +L+   +D   
Sbjct: 455 KEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTI 497

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 15/85 (17%)

Query: 61  HEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIY 120
             GS  +L   +++      + L      + FD  +A+     ++V++ + A WC  C  
Sbjct: 2   PLGSEDDLEVKEENG----VLVLND----ANFDNFVAD----KDTVLLEFYAPWCGHCKQ 49

Query: 121 LKPKLEKLAADYH---PRLRFYNVD 142
             P+ EK+A       P +    +D
Sbjct: 50  FAPEYEKIANILKDKDPPIPVAKID 74

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157
            I ++ +  C  C   K  +E++A +    +    ++V   P +     G+M
Sbjct: 5   KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENP-QKAMEYGIM 55

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 80  SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLA--ADYHPRLR 137
            +  T I +  + ++ + EA+   + V++   A WC  C   +                 
Sbjct: 10  HLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTV 67

Query: 138 FYNVDVNA 145
               +V A
Sbjct: 68  LLQANVTA 75

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 92  FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVD--VNAVP 147
           FD ++ +     + V+I + A WC  C  L+P    L   Y     L    +D   N + 
Sbjct: 17  FDAIVMDP---KKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDIT 73

Query: 148 HK 149
           + 
Sbjct: 74  ND 75

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 36.2 bits (84), Expect = 7e-04
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           +E  FD VI    + ++ V++   A WC  C   +P  +K+A  Y  +  F  ++V+   
Sbjct: 10  TEENFDEVI----RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQ 65

Query: 148 HKLVARAGVM 157
            K+  +  V+
Sbjct: 66  -KIADKYSVL 74

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 12/99 (12%)

Query: 59  TKHEGSIKELNEDDDDDHAPVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKC 118
           T+  G +  L + +                E   +    E    D+  I+ + A WC  C
Sbjct: 5   TEGNGKVIHLTKAEFLA--------KVYNFEKNPEEWKYEG---DKPAIVDFYADWCGPC 53

Query: 119 IYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM 157
             + P L++LA +Y  ++  Y VD      +L    G+ 
Sbjct: 54  KMVAPILDELAKEYDGQIVIYKVDTEKEQ-ELAGAFGIR 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.87
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.87
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.83
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.82
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.8
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.8
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.79
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.78
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.78
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.77
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.77
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.77
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.77
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.76
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.75
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.75
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.75
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.75
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.75
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.75
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.75
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.74
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.74
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.74
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.73
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.73
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.73
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.73
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.73
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.73
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.73
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.72
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.72
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.72
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.72
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.72
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.72
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.71
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.71
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.71
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.71
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.71
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.71
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.71
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.7
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.7
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.7
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.7
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.7
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.7
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.7
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.7
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.7
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.69
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.69
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.69
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.69
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.69
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.69
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.68
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.68
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.68
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.68
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.68
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.67
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.67
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.67
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.67
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.67
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.67
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.67
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.66
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.66
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.66
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.66
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.65
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.65
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.64
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.64
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.63
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.63
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.62
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.62
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.61
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.61
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.6
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.6
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.6
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.6
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.59
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.59
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.58
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.58
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.57
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.57
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.34
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.56
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.56
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.55
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.54
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.54
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.54
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.53
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.29
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.53
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.53
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.52
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.52
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.5
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.49
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.49
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.48
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.48
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.46
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.46
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.45
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.45
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.45
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.45
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.45
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.45
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.44
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.44
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.44
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.43
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.43
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.43
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.4
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.4
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.4
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.4
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.39
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.39
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.39
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.39
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.38
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.38
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.38
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.37
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.37
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.37
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.37
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.36
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.36
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.36
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.36
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.34
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.34
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.34
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.33
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.33
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.32
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.0
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.32
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.29
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.29
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.28
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.27
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.26
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.26
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.25
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.25
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.25
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.24
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.23
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.21
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.2
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.2
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.2
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.17
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.17
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.17
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.16
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.16
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.77
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.13
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.12
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.11
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.11
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.1
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.09
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.09
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.09
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.08
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.08
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.07
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.06
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.06
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.05
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.01
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.01
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.0
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.98
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.98
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.96
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.96
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.91
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.9
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.9
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.89
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.88
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.88
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	98.87
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.86
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.86
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.86
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.84
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.84
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.83
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.82
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.82
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.81
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.79
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.78
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	98.76
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.76
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.76
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.76
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.75
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.71
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.7
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.7
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.69
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.68
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.66
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.65
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.64
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.64
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.63
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.63
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.63
3me7_A	170	Putative uncharacterized protein; electron transfe	98.63
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.61
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.58
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.56
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	98.55
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.54
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.49
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.46
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	98.45
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.42
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.42
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.41
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	98.4
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.4
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.39
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	98.35
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.33
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.32
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.31
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.3
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.26
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.25
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	98.14
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	98.11
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	98.1
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.1
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.09
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.07
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	98.05
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	98.04
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	98.02
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	98.02
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	97.98
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.88
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.86
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.86
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	97.7
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.68
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.68
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	97.53
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	97.44
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	97.26
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	97.26
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	97.21
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	97.1
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	97.02
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.01
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	96.96
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	96.94
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	96.86
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	96.84
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	96.81
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	96.77
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	96.69
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	96.64
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	96.6
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	96.58
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	96.48
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	96.44
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	96.42
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	96.36
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	96.35
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	96.18
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	96.09
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	95.57
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	95.53
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	95.41
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	94.92
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	94.74
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	94.24
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	94.15
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	93.88
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.45
1t4y_A	105	Adaptive-response sensory-kinase SASA; alpha/beta	92.19
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	92.11
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	91.87
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	91.78
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	91.67
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	91.05
3l78_A	120	Regulatory protein SPX; transcription, transcripti	89.08
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	88.59
1wwj_A	105	Circadian clock protein KAIB; 1.90A {Synechocystis	87.43
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	86.63
3fz4_A	120	Putative arsenate reductase; APC61768, structural	86.42
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	86.23
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	85.88
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	83.4
3gkx_A	120	Putative ARSC family related protein; ARSC family	83.39
3rdw_A	121	Putative arsenate reductase; structural genomics,	81.97
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	81.24
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	80.02

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.87  E-value=1.1e-22  Score=149.88  Aligned_cols=77  Identities=21%  Similarity=0.278  Sum_probs=71.4

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+.+.++|++.+..  +.+++|||+|||+|||||+.+.|.|+++++++++++.|++||+|++++ ++++|+|+++||+
T Consensus        23 v~~l~t~~~f~~~v~~--~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e-~a~~y~V~siPT~   99 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVN--EDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPD-FNTMYELYDPVSV   99 (160)
T ss_dssp             CEECCSHHHHHHHHHH--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT-TTTTTTCCSSEEE
T ss_pred             hhccCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHH-HHHHcCCCCCCEE
Confidence            6778899999988843  478999999999999999999999999999997789999999999999 9999999999985

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.87  E-value=4.2e-22  Score=137.62  Aligned_cols=76  Identities=22%  Similarity=0.496  Sum_probs=70.1

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..|.+.++|++.+..  +.+++++|+|||+||+||+.+.|.++++++++ +++.|++||++++++ ++++|+|+++||+
T Consensus         2 V~~i~~~~~f~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~-~~~~~~~vd~d~~~~-l~~~~~V~~~PT~   77 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNE--AGNKLVVIDFYATWCGPCKMIAPKLEELSQSM-SDVVFLKVDVDECED-IAQDNQIACMPTF   77 (105)
T ss_dssp             CEECCSHHHHHHHHHH--TTTSEEEEEEECTTCHHHHHHHHHHHHHHHHC-TTEEEEEEETTTCHH-HHHHTTCCBSSEE
T ss_pred             eEEeCCHHHHHHHHHh--cCCCEEEEEEECCCCCCccCCCcchhhhhhcc-CCeEEEEEecccCHH-HHHHcCCCeecEE
Confidence            4568899999999965  56899999999999999999999999999998 789999999999999 9999999999985

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.83  E-value=9.5e-21  Score=138.77  Aligned_cols=101  Identities=18%  Similarity=0.284  Sum_probs=85.3

Q ss_pred             hhhhcccccccccCCCCCCCCC------CCCcC--ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHH
Q 031285           56 IRVTKHEGSIKELNEDDDDDHA------PVSIP--LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEK  127 (162)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~  127 (162)
                      ..+|++|++.|++++......+      .+.+.  ..++ +.++|++.+    ..++++||+||++||++|+.+.|.|++
T Consensus        14 ~~~c~~c~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l-~~~~f~~~~----~~~~~vlv~F~a~wC~~C~~~~p~l~~   88 (155)
T 2ppt_A           14 RLTCLACGQANKVPSDRLAAGPKCGICGAGLITGKVAGI-DPAILARAE----RDDLPLLVDFWAPWCGPCRQMAPQFQA   88 (155)
T ss_dssp             EEECTTTCCEEEEEGGGTTSCCBCTTTCCBSCCSSEEEC-CHHHHHHHT----TCSSCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             eEECccccccccCCcccccCCCCCCcCCccccCCCCccC-CHHHHHHHH----hCCCcEEEEEECCCCHHHHHHHHHHHH
Confidence            4789999999999887643322      23333  2333 568899888    789999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          128 LAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       128 l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +++++++++.|++||++.+++ ++++|+|+++||+
T Consensus        89 la~~~~~~v~~~~vd~~~~~~-l~~~~~i~~~Pt~  122 (155)
T 2ppt_A           89 AAATLAGQVRLAKIDTQAHPA-VAGRHRIQGIPAF  122 (155)
T ss_dssp             HHHHHTTTCEEEEEETTTSTH-HHHHTTCCSSSEE
T ss_pred             HHHHccCCEEEEEEeCCccHH-HHHHcCCCcCCEE
Confidence            999997789999999999999 9999999999985

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.82  E-value=3e-20  Score=134.03  Aligned_cols=102  Identities=25%  Similarity=0.362  Sum_probs=86.5

Q ss_pred             hhhhhcccccccccCCCCCCCCC--------CCCcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHH
Q 031285           55 VIRVTKHEGSIKELNEDDDDDHA--------PVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLE  126 (162)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~  126 (162)
                      +...|++|++.|+++.......+        .....+..+ +.++|++.+    ..+++++|+||++||++|+.+.|.|+
T Consensus         4 ~~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~~~~~~----~~~k~vlv~F~a~wC~~C~~~~p~l~   78 (148)
T 3p2a_A            4 MNTVCTACMATNRLPEERIDDGAKCGRCGHSLFDGEVINA-TAETLDKLL----QDDLPMVIDFWAPWCGPCRSFAPIFA   78 (148)
T ss_dssp             EEEECTTTCCEEEEESSCSCSCCBCTTTCCBTTCCCCEEC-CTTTHHHHT----TCSSCEEEEEECSSCHHHHHHHHHHH
T ss_pred             cEEECcccccccCCCCcccccCCcchhcCCccccCCceec-CHHHHHHHH----hcCCcEEEEEECCCCHHHHHHHHHHH
Confidence            45679999999998877665432        123344444 457899988    78999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          127 KLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       127 ~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++++++++++.|+.||++.+++ ++++|+|.++|++
T Consensus        79 ~~~~~~~~~~~~~~vd~~~~~~-l~~~~~v~~~Pt~  113 (148)
T 3p2a_A           79 ETAAERAGKVRFVKVNTEAEPA-LSTRFRIRSIPTI  113 (148)
T ss_dssp             HHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             HHHHHcCCceEEEEEECcCCHH-HHHHCCCCccCEE
Confidence            9999998889999999999999 9999999999985

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.80  E-value=2.6e-20  Score=134.66  Aligned_cols=76  Identities=24%  Similarity=0.246  Sum_probs=67.1

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCC--hhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWC--RKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC--~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      .+..+++ ++|++.+.   +.++++||+|||+||  |||+.+.|.+++++++|+++++|++||+|++++ ++.+|+|+++
T Consensus        16 g~~~vt~-~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~-la~~ygV~si   90 (137)
T 2qsi_A           16 APTLVDE-ATVDDFIA---HSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERG-LMARFGVAVC   90 (137)
T ss_dssp             -CEEECT-TTHHHHHH---TSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHH-HHHHHTCCSS
T ss_pred             CCcccCH-hHHHHHHh---cCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHH-HHHHcCCccC
Confidence            3445544 78998883   445599999999999  999999999999999998899999999999999 9999999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      ||+
T Consensus        91 PTl   93 (137)
T 2qsi_A           91 PSL   93 (137)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            985

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.80  E-value=1.5e-19  Score=131.59  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=70.8

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+.+.++|++.+..  +.++++||+|||+||++|+.+.|.|++++++|++++.|++||++++++ ++++|+|.++||
T Consensus         4 ~l~~i~~~~~~~~~i~~--~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~-l~~~~~v~~~Pt   80 (149)
T 3gix_A            4 LLPKLTSKKEVDQAIKS--TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAV-YTQYFDISYIPS   80 (149)
T ss_dssp             SCCEECSHHHHHHHHHH--CCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCH-HHHHTTCCSSSE
T ss_pred             ceeecCCHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHH-HHHHcCCCccCe
Confidence            45667788999999843  569999999999999999999999999999996679999999999999 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        81 ~   81 (149)
T 3gix_A           81 T   81 (149)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.79  E-value=4.2e-20  Score=133.98  Aligned_cols=74  Identities=14%  Similarity=0.120  Sum_probs=67.5

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCC--ChhhhhhhHhHHHHHHHhCCC-eEEEEEECCCChHHHHHHcCCccc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASW--CRKCIYLKPKLEKLAADYHPR-LRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~W--C~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      +..+ +.++|++.+    .++++|||+|||+|  ||+|+.+.|.+++++++|+++ ++|++||+|++++ ++.+|||+++
T Consensus        19 ~~~~-t~~~F~~~v----~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~-lA~~ygV~sI   92 (140)
T 2qgv_A           19 WTPV-SESRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEA-IGDRFGAFRF   92 (140)
T ss_dssp             CEEC-CHHHHHHHH----HTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHH-HHHHHTCCSS
T ss_pred             CccC-CHHHHHHHH----hCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHH-HHHHcCCccC
Confidence            3444 568999999    57889999999999  999999999999999999888 9999999999999 9999999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      ||+
T Consensus        93 PTl   95 (140)
T 2qgv_A           93 PAT   95 (140)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            985

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.78  E-value=6.6e-19  Score=119.97  Aligned_cols=77  Identities=18%  Similarity=0.444  Sum_probs=70.6

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+.+.++|++.+..  +++++++|+||++||++|+.+.|.++++++++ +++.|+++|++.+++ ++++|+|.++||
T Consensus         2 ~v~~i~~~~~~~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~-~~~~~~v~~~Pt   77 (107)
T 1gh2_A            2 GVKPVGSDPDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQCQG-TAATNNISATPT   77 (107)
T ss_dssp             CEEEECSGGGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHH-HHHHTTCCSSSE
T ss_pred             ceEEecCHHHHHHHHHh--CCCCEEEEEEECCCChhhHHHHHHHHHHHHHC-CCcEEEEEECccCHH-HHHhcCCCcccE
Confidence            46778888999999853  47999999999999999999999999999999 789999999999998 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        78 ~   78 (107)
T 1gh2_A           78 F   78 (107)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.78  E-value=1.6e-18  Score=121.98  Aligned_cols=84  Identities=18%  Similarity=0.390  Sum_probs=75.4

Q ss_pred             CCCCcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCC
Q 031285           77 APVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV  156 (162)
Q Consensus        77 ~~~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I  156 (162)
                      ++....+..+.+.++|++.+..++.+++++||+||++||++|+.+.|.|+++++++ +++.|+.||++.+.+ ++++|+|
T Consensus        12 ~~~~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~d~~~~-l~~~~~v   89 (124)
T 1xfl_A           12 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL-PNVLFLKVDTDELKS-VASDWAI   89 (124)
T ss_dssp             CCCCSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHC-SSEEEEEEETTTSHH-HHHHTTC
T ss_pred             hcCCCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCcEEEEEECccCHH-HHHHcCC
Confidence            34555688898999999999765457999999999999999999999999999999 589999999999988 9999999


Q ss_pred             cccccC
Q 031285          157 MVSLMI  162 (162)
Q Consensus       157 ~~~Pti  162 (162)
                      .++||+
T Consensus        90 ~~~Pt~   95 (124)
T 1xfl_A           90 QAMPTF   95 (124)
T ss_dssp             CSSSEE
T ss_pred             CccCEE
Confidence            999985

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.77  E-value=5.3e-20  Score=125.35  Aligned_cols=74  Identities=11%  Similarity=0.236  Sum_probs=54.0

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++.+.+.++|++.+    +++++++|+|||+||++|+.+.|.++++++++ +++.|++||++.+++ ++++|+|.++||+
T Consensus         2 m~~i~~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~-~~~~~~~vd~~~~~~-l~~~~~v~~~Pt~   75 (105)
T 4euy_A            2 MNTFKTIEELATYI----EEQQLVLLFIKTENCGVCDVMLRKVNYVLENY-NYVEKIEILLQDMQE-IAGRYAVFTGPTV   75 (105)
T ss_dssp             --------CCSSST----TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTC-TTEEEEEEEECCC----------CCCCEE
T ss_pred             ccccCCHHHHHHHH----hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHc-CCceEEEEECCCCHH-HHHhcCCCCCCEE
Confidence            45667778888888    78999999999999999999999999999999 689999999999999 9999999999985

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.77  E-value=5.9e-19  Score=122.68  Aligned_cols=76  Identities=22%  Similarity=0.453  Sum_probs=68.2

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .....+.++|++.+..  .++++++|+|||+||++|+.+.|.|+++++++ +++.|++||++.+++ ++++|+|.++|++
T Consensus        13 ~~~~~t~~~f~~~l~~--~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~d~~~~-l~~~~~v~~~Pt~   88 (116)
T 3qfa_C           13 VKQIESKTAFQEALDA--AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDDCQD-VASECEVKSMPTF   88 (116)
T ss_dssp             CBCCCCHHHHHHHHHH--HTTSCEEEEEECTTCHHHHHHHHHHHHHHTTC-TTSEEEEEETTTTHH-HHHHTTCCSSSEE
T ss_pred             ccCCCCHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCHH-HHHHcCCccccEE
Confidence            3445588999999943  38999999999999999999999999999999 449999999999999 9999999999985

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.77  E-value=4.7e-19  Score=128.03  Aligned_cols=77  Identities=21%  Similarity=0.308  Sum_probs=69.2

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+.+.++|++.+..  ..+++++|+|||+||++|+.+.|.|+++++++++++.|++||++++++ ++++|+|+++||+
T Consensus         5 l~~i~~~~~~~~~v~~--~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~-~~~~~~i~~~Pt~   81 (142)
T 1qgv_A            5 LPHLHNGWQVDQAILS--EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD-FNKMYELYDPCTV   81 (142)
T ss_dssp             SCBCCSHHHHHHHHHT--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT-TTTSSCSCSSCEE
T ss_pred             HhccCCHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHH-HHHHcCCCCCCEE
Confidence            4567788999987731  269999999999999999999999999999997789999999999998 9999999999985

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.77  E-value=1.8e-18  Score=118.80  Aligned_cols=73  Identities=29%  Similarity=0.650  Sum_probs=67.3

Q ss_pred             eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ....+.++|++.+    +++++++|+||++||++|+.+.|.++++++++ +++.|+.||++.+.+ ++++|+|.++|++
T Consensus         9 ~~~~~~~~f~~~~----~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~-~~~~~~~vd~~~~~~-l~~~~~v~~~Pt~   81 (109)
T 3f3q_A            9 TQFKTASEFDSAI----AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLDVDELGD-VAQKNEVSAMPTL   81 (109)
T ss_dssp             EECCSHHHHHHHT----TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             cCCCCHHHHHHHH----hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHC-CCCEEEEEECCCCHH-HHHHcCCCccCEE
Confidence            3345788999999    78999999999999999999999999999999 669999999999999 9999999999985

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.76  E-value=2e-18  Score=118.05  Aligned_cols=80  Identities=26%  Similarity=0.573  Sum_probs=71.4

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+.+.++|++.+..++..+++++|+||++||++|+.+.|.|+++++++++++.|+.||++.+.+ ++++|+|.++||
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt   81 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA-VAEAAGITAMPT   81 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH-HHHHHTCCBSSE
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHH-HHHHcCCCcccE
Confidence            4677888899999995432338999999999999999999999999999996689999999999988 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        82 ~   82 (112)
T 1ep7_A           82 F   82 (112)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.75  E-value=4.8e-18  Score=114.70  Aligned_cols=76  Identities=24%  Similarity=0.505  Sum_probs=69.5

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++.+.+.++|++.+..  .++++++|+||++||++|+.+.|.++++++++ +++.|+.+|++.+++ ++++|+|.++|++
T Consensus         2 v~~i~~~~~~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~   77 (105)
T 3m9j_A            2 VKQIESKTAFQEALDA--AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDCQD-VASESEVKSMPTF   77 (105)
T ss_dssp             CEECCSHHHHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHS-TTSEEEEEETTTCHH-HHHHTTCCBSSEE
T ss_pred             eEEcCCHHHHHHHHHh--cCCCeEEEEEECCCChhhHHHHHHHHHHHHHc-cCeEEEEEEhhhhHH-HHHHcCCCcCcEE
Confidence            4678899999999953  47999999999999999999999999999999 559999999999998 9999999999985

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.75  E-value=2.9e-18  Score=119.00  Aligned_cols=78  Identities=24%  Similarity=0.557  Sum_probs=70.4

Q ss_pred             CCcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcc
Q 031285           79 VSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV  158 (162)
Q Consensus        79 ~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~  158 (162)
                      +...+..+++.+.|++.+    +++++++|+||++||++|+.+.|.|++++++++ ++.|+.||++.+.+ ++++|+|.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~----~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~-~v~~~~vd~~~~~~-l~~~~~v~~   83 (114)
T 2oe3_A           10 SYTSITKLTNLTEFRNLI----KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP-DVRFVKCDVDESPD-IAKECEVTA   83 (114)
T ss_dssp             CGGGSCBCCSHHHHHHHH----HHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHH-HHHHTTCCS
T ss_pred             chhheeecCCHHHHHHHH----hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCHH-HHHHCCCCc
Confidence            334567788989999988    678999999999999999999999999999994 49999999999998 999999999


Q ss_pred             cccC
Q 031285          159 SLMI  162 (162)
Q Consensus       159 ~Pti  162 (162)
                      +|++
T Consensus        84 ~Pt~   87 (114)
T 2oe3_A           84 MPTF   87 (114)
T ss_dssp             BSEE
T ss_pred             ccEE
Confidence            9985

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.75  E-value=5.4e-18  Score=120.65  Aligned_cols=81  Identities=21%  Similarity=0.399  Sum_probs=72.9

Q ss_pred             CcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccc
Q 031285           80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        80 ~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      ...+..+.+.++|++.+..+...+++++|+||++||++|+.+.|.|+++++++ +++.|+.||++.+.+ ++++|+|.++
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~v~~~~~~~-~~~~~~v~~~  100 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENY-PSLMFLVIDVDELSD-FSASWEIKAT  100 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHH-HHHHTTCCEE
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCcccHH-HHHHcCCCcc
Confidence            33577888899999998665456999999999999999999999999999998 689999999999998 9999999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      |++
T Consensus       101 Pt~  103 (139)
T 3d22_A          101 PTF  103 (139)
T ss_dssp             SEE
T ss_pred             cEE
Confidence            984

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.75  E-value=4.2e-18  Score=116.73  Aligned_cols=78  Identities=15%  Similarity=0.345  Sum_probs=66.3

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      +..+++.++|++.+.. +..+++++|+||++||++|+.+.|.++++++++ .+++.|++||++.+++ ++++|+|.++||
T Consensus         2 v~~i~~~~~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt   79 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTT-AAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSE-ISELFEISAVPY   79 (112)
T ss_dssp             EEEECCHHHHHHHHTT-TTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHH-HHHHTTCCSSSE
T ss_pred             ccccCCHHHHHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHH-HHHHcCCCcccE
Confidence            4567788999999832 134899999999999999999999999999995 2679999999999998 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        80 ~   80 (112)
T 3d6i_A           80 F   80 (112)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.75  E-value=4.7e-18  Score=120.10  Aligned_cols=74  Identities=23%  Similarity=0.489  Sum_probs=69.6

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+++.++|++.+    +.++++||+||++||++|+.+.|.|+++++++ +++.|+.||++.+.+ ++++|+|.++||+
T Consensus        21 v~~l~~~~~f~~~~----~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~d~~~~-l~~~~~v~~~Pt~   94 (125)
T 1r26_A           21 VVDVYSVEQFRNIM----SEDILTVAWFTAVWCGPCKTIERPMEKIAYEF-PTVKFAKVDADNNSE-IVSKCRVLQLPTF   94 (125)
T ss_dssp             CEEECCHHHHHHHH----HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHC-TTSEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             eEECCCHHHHHHHH----ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHC-CCCEEEEEECCCCHH-HHHHcCCCcccEE
Confidence            67788889999999    78999999999999999999999999999999 679999999999998 9999999999985

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.75  E-value=3.2e-18  Score=120.36  Aligned_cols=76  Identities=14%  Similarity=0.337  Sum_probs=66.0

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHh-----CCCeEEEEEECCCChHHHHHHcCC
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY-----HPRLRFYNVDVNAVPHKLVARAGV  156 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-----~~~v~~~~vd~d~~~~~la~~~~I  156 (162)
                      .+..+ +.++|++.+.   +.+++++|+|||+||++|+.+.|.|+++++++     .+++.|++||++.+.+ ++++|+|
T Consensus        16 ~v~~l-~~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v   90 (127)
T 3h79_A           16 RVVEL-TDETFDSIVM---DPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPD-VIERMRV   90 (127)
T ss_dssp             CCEEC-CTTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHH-HHHHTTC
T ss_pred             ceEEC-ChhhHHHHHh---CCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHh-HHHhcCC
Confidence            34555 5578998882   46999999999999999999999999999876     2569999999999999 9999999


Q ss_pred             cccccC
Q 031285          157 MVSLMI  162 (162)
Q Consensus       157 ~~~Pti  162 (162)
                      .++||+
T Consensus        91 ~~~Pt~   96 (127)
T 3h79_A           91 SGFPTM   96 (127)
T ss_dssp             CSSSEE
T ss_pred             ccCCEE
Confidence            999985

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.75  E-value=6.7e-18  Score=117.32  Aligned_cols=79  Identities=25%  Similarity=0.436  Sum_probs=70.6

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      ....+.+.++|++.+..++..+++++|+||++||++|+.+.|.|++++++++ ++.|+.||++.+++ ++++|+|.++|+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~vd~~~~~~-~~~~~~v~~~Pt   90 (122)
T 2vlu_A           13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP-NAVFLKVDVDELKP-IAEQFSVEAMPT   90 (122)
T ss_dssp             CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHH-HHHHTTCCSSSE
T ss_pred             cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECCCCHH-HHHHcCCCcccE
Confidence            4566778899999986544479999999999999999999999999999994 49999999999998 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        91 ~   91 (122)
T 2vlu_A           91 F   91 (122)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.74  E-value=9.8e-18  Score=114.22  Aligned_cols=76  Identities=24%  Similarity=0.451  Sum_probs=68.3

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+ +.++|++.+.   +++++++|+||++||++|+.+.|.++++++++++++.|+.||++.+++ ++++|+|.++|+
T Consensus         5 ~v~~l-~~~~~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt   79 (111)
T 3gnj_A            5 SLEKL-DTNTFEQLIY---DEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKT-LFQRFSLKGVPQ   79 (111)
T ss_dssp             CSEEC-CHHHHHHHHT---TSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHH-HHHHTTCCSSCE
T ss_pred             cceec-CHHHHHHHHH---hcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChh-HHHhcCCCcCCE
Confidence            34555 6788998883   578999999999999999999999999999997679999999999998 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        80 ~   80 (111)
T 3gnj_A           80 I   80 (111)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.74  E-value=1.1e-17  Score=112.82  Aligned_cols=77  Identities=17%  Similarity=0.434  Sum_probs=70.0

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+++.++|++.+..  .++++++|+||++||++|+.+.|.++++++++++++.++.+|++.+.+ ++++|+|.++|++
T Consensus         2 v~~l~~~~~~~~~l~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~   78 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECED-IAMEYNISSMPTF   78 (106)
T ss_dssp             EEECCSHHHHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             ceecCCHHHHHHHHHh--cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHH-HHHHcCCCcccEE
Confidence            4567788899999943  379999999999999999999999999999997789999999999998 9999999999985

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.74  E-value=1.2e-17  Score=114.07  Aligned_cols=79  Identities=18%  Similarity=0.428  Sum_probs=72.5

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+.+.++|++.+..+...+++++|+||++||++|+.+.|.++++++++ +++.|+.+|++.+++ ++++|+|.++|+
T Consensus         5 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~v~~~~~~~-~~~~~~v~~~Pt   82 (113)
T 1ti3_A            5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF-PNVTFLKVDVDELKA-VAEEWNVEAMPT   82 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHC-SSEEEEEEETTTCHH-HHHHHHCSSTTE
T ss_pred             ceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhC-CCcEEEEEEccccHH-HHHhCCCCcccE
Confidence            477888999999999765557999999999999999999999999999999 589999999999998 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        83 ~   83 (113)
T 1ti3_A           83 F   83 (113)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.73  E-value=5.5e-18  Score=134.17  Aligned_cols=77  Identities=23%  Similarity=0.454  Sum_probs=67.8

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+ +.++|++.+..  +.+++|+|+|||+||++|+.+.|.|+++++++++++.|++||++.+++ ++++|+|.++||
T Consensus         8 ~v~~~-~~~~f~~~~~~--~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt   83 (287)
T 3qou_A            8 NIVNI-NESNLQQVLEQ--SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQM-IAAQFGLRAIPT   83 (287)
T ss_dssp             TEEEC-CTTTHHHHHTT--TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHH-HHHTTTCCSSSE
T ss_pred             ccEEC-CHHHHHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHH-HHHHcCCCCCCe
Confidence            35555 44789998732  359999999999999999999999999999997779999999999999 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        84 ~   84 (287)
T 3qou_A           84 V   84 (287)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.73  E-value=7.4e-18  Score=122.54  Aligned_cols=78  Identities=17%  Similarity=0.466  Sum_probs=70.8

Q ss_pred             cCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccc
Q 031285           81 IPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSL  160 (162)
Q Consensus        81 ~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~P  160 (162)
                      ..+..+++.++|++.+..  ..++++||+||++||++|+.+.|.|+++++++ +++.|++||++.+++ ++++|+|.++|
T Consensus        12 ~~v~~l~~~~~~~~~~~~--~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~~~~~~-l~~~~~v~~~P   87 (153)
T 2wz9_A           12 AAVEEVGSAGQFEELLRL--KAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEGVPE-VSEKYEISSVP   87 (153)
T ss_dssp             CCSEEECSHHHHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHH-HHHHTTCCSSS
T ss_pred             CCeEEcCCHHHHHHHHHh--cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHc-CCeEEEEEECCCCHH-HHHHcCCCCCC
Confidence            357788888999999843  34999999999999999999999999999998 789999999999998 99999999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      ++
T Consensus        88 t~   89 (153)
T 2wz9_A           88 TF   89 (153)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.73  E-value=1.3e-17  Score=114.81  Aligned_cols=79  Identities=24%  Similarity=0.470  Sum_probs=72.0

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+.+.++|++.+..++..+++++|+||++||++|+.+.|.|+++++++ +++.|+.||++.+++ ++++|+|.++|+
T Consensus         7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~-~~~~~~v~~~Pt   84 (118)
T 2vm1_A            7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKF-PGAIFLKVDVDELKD-VAEAYNVEAMPT   84 (118)
T ss_dssp             CEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHH-HHHHTTCCSBSE
T ss_pred             ceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCcEEEEEEcccCHH-HHHHcCCCcCcE
Confidence            467788899999999765456999999999999999999999999999999 589999999999988 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        85 ~   85 (118)
T 2vm1_A           85 F   85 (118)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.73  E-value=3.4e-18  Score=128.66  Aligned_cols=76  Identities=17%  Similarity=0.220  Sum_probs=66.2

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEec-------CCChhhhhhhHhHHHHHHHhC-----CCeEEEEEECCCChHHH
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMA-------SWCRKCIYLKPKLEKLAADYH-----PRLRFYNVDVNAVPHKL  150 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a-------~WC~~C~~~~p~l~~l~~~~~-----~~v~~~~vd~d~~~~~l  150 (162)
                      ++.+ +.++|++++..  .++.+|||+|||       +|||+|+.+.|.|++++++|.     +++.|++||+|++++ +
T Consensus        20 vi~l-t~~nF~~~v~~--~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~-l   95 (178)
T 3ga4_A           20 VITV-TADNYPLLSRG--VPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQ-L   95 (178)
T ss_dssp             EEEC-CTTTHHHHTTC--CTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHH-H
T ss_pred             CEEC-CHHHHHHHHcc--cCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHH-H
Confidence            4555 45789988731  346789999999       499999999999999999996     789999999999999 9


Q ss_pred             HHHcCCcccccC
Q 031285          151 VARAGVMVSLMI  162 (162)
Q Consensus       151 a~~~~I~~~Pti  162 (162)
                      +++|||+++||+
T Consensus        96 a~~~~I~siPtl  107 (178)
T 3ga4_A           96 VKDLKLQNVPHL  107 (178)
T ss_dssp             HHHTTCCSSCEE
T ss_pred             HHHcCCCCCCEE
Confidence            999999999985

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.73  E-value=1.2e-17  Score=119.04  Aligned_cols=78  Identities=27%  Similarity=0.547  Sum_probs=67.7

Q ss_pred             CceecCCHHHHHHHHHHHhc---------CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHH
Q 031285           82 PLTPIGSESQFDRVIAEAQQ---------LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVA  152 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~---------~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~  152 (162)
                      .+..+ +.++|...+... .         .++++||+||++||++|+.+.|.|++++++|++++.|+.||++.+.+ +++
T Consensus        23 ~v~~l-~~~~f~~~l~~~-~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~   99 (141)
T 3hxs_A           23 GTIHL-TRAEFLKKIADY-ENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE-LAR   99 (141)
T ss_dssp             CCEEC-CHHHHHHHTCCC-SSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHH
T ss_pred             Ccccc-cHHHHHHHhhcc-ccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHH-HHH
Confidence            44455 668898888310 0         48999999999999999999999999999997789999999999999 999


Q ss_pred             HcCCcccccC
Q 031285          153 RAGVMVSLMI  162 (162)
Q Consensus       153 ~~~I~~~Pti  162 (162)
                      +|+|.++|++
T Consensus       100 ~~~v~~~Pt~  109 (141)
T 3hxs_A          100 DFGIQSIPTI  109 (141)
T ss_dssp             HTTCCSSSEE
T ss_pred             HcCCCCcCEE
Confidence            9999999985

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.73  E-value=1.5e-17  Score=111.86  Aligned_cols=76  Identities=24%  Similarity=0.536  Sum_probs=68.7

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++.+++.++|++.+..  ..+++++|+||++||++|+.+.|.++++++++ +++.|+.+|++.+++ ++++|+|.++|++
T Consensus         1 v~~i~~~~~~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~   76 (104)
T 2vim_A            1 MRVLATAADLEKLINE--NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVDVDQNEE-AAAKYSVTAMPTF   76 (104)
T ss_dssp             CEECCSHHHHHHHHHT--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             CeecCCHHHHHHHHHh--cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHC-CCCEEEEEeccCCHH-HHHHcCCccccEE
Confidence            3567788999999942  37999999999999999999999999999998 589999999999998 9999999999984

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.73  E-value=7.5e-18  Score=120.30  Aligned_cols=100  Identities=25%  Similarity=0.363  Sum_probs=55.5

Q ss_pred             hhhcccccccccCCCCCCCC------CCCCcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHH
Q 031285           57 RVTKHEGSIKELNEDDDDDH------APVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAA  130 (162)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~  130 (162)
                      ..|++|+..++++.......      ..+...+..+ +.++|.+.+.   ..++ +||+||++||++|+.+.|.|+++++
T Consensus         3 ~~~~~~~~~~~~~~~r~~~~~~~~~c~~~~~~v~~l-~~~~~~~~~~---~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~   77 (140)
T 1v98_A            3 VTCPKCGAKNRLGTPPPGQVPVCGACKTPLPWVVEA-DEKGFAQEVA---GAPL-TLVDFFAPWCGPCRLVSPILEELAR   77 (140)
T ss_dssp             --------------------------------------------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             eEcccccccccCCcccccCCcccccccCCCCccccC-CHHHHHHHHH---cCCC-EEEEEECCCCHHHHHHHHHHHHHHH
Confidence            45777777777666543221      1222334444 5577888772   3444 9999999999999999999999999


Q ss_pred             HhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          131 DYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       131 ~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++++++.|++||++.+.+ ++++|+|.++||+
T Consensus        78 ~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~  108 (140)
T 1v98_A           78 DHAGRLKVVKVNVDEHPG-LAARYGVRSVPTL  108 (140)
T ss_dssp             HTTTTEEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             HccCceEEEEEECCCCHH-HHHHCCCCccCEE
Confidence            997689999999999998 9999999999985

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.72  E-value=1.2e-17  Score=112.90  Aligned_cols=69  Identities=25%  Similarity=0.542  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .++|++.+    ..+++++|+||++||++|+.+.|.++++++++++++.++.+|++.+++ ++++|+|.++|++
T Consensus         7 ~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~-~~~~~~v~~~Pt~   75 (105)
T 1nsw_A            7 DANFQQAI----QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE-TTSQFGIMSIPTL   75 (105)
T ss_dssp             TTTHHHHH----SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             HHhHHHHH----hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHH-HHHHcCCccccEE
Confidence            36788777    788999999999999999999999999999997679999999999998 9999999999985

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.72  E-value=1.1e-17  Score=113.24  Aligned_cols=70  Identities=24%  Similarity=0.484  Sum_probs=65.5

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+    .++++++|+||++||++|+.+.|.++++++++++++.|+.+|++.+++ ++++|+|.++|++
T Consensus        10 ~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~i~~~Pt~   79 (109)
T 3tco_A           10 TEENFDEVI----RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQK-IADKYSVLNIPTT   79 (109)
T ss_dssp             CTTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             cHHHHHHHH----hcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHH-HHHhcCcccCCEE
Confidence            567899998    569999999999999999999999999999997789999999999999 9999999999984

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.72  E-value=1.8e-17  Score=115.51  Aligned_cols=75  Identities=20%  Similarity=0.343  Sum_probs=67.7

Q ss_pred             ceecC-CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           83 LTPIG-SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        83 ~~~i~-~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      +..++ +.++|++.+.   +.++++||+||++||++|+.+.|.|+++++++ +++.|+.||++.+.+ ++++|+|.++|+
T Consensus         5 v~~~~g~~~~~~~~~~---~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~-~~~~~~i~~~Pt   79 (118)
T 2f51_A            5 IVHFNGTHEALLNRIK---EAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGN-AADAYGVSSIPA   79 (118)
T ss_dssp             SEEECSCHHHHHHHHH---HCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHH-HHHHTTCCSSSE
T ss_pred             ceEecCCHHHHHHHHH---hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCHH-HHHhcCCCCCCE
Confidence            55666 7788986653   56899999999999999999999999999999 889999999999998 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        80 ~   80 (118)
T 2f51_A           80 L   80 (118)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.72  E-value=2.2e-17  Score=114.95  Aligned_cols=77  Identities=23%  Similarity=0.448  Sum_probs=68.6

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      ......+.++|++.+.   +.++++||+||++||++|+.+.|.|+++++++++++.|+.||++.+.+ ++++|+|.++|+
T Consensus        13 ~~~~~~~~~~f~~~v~---~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~-l~~~~~v~~~Pt   88 (119)
T 1w4v_A           13 TTFNIQDGPDFQDRVV---NSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTD-LAIEYEVSAVPT   88 (119)
T ss_dssp             SEEECCSHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHH-HHHHTTCCSSSE
T ss_pred             eEEEecChhhHHHHHH---cCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHH-HHHHcCCCcccE
Confidence            3444557889988762   678999999999999999999999999999997789999999999998 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        89 ~   89 (119)
T 1w4v_A           89 V   89 (119)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.72  E-value=1.5e-17  Score=114.96  Aligned_cols=75  Identities=17%  Similarity=0.483  Sum_probs=68.6

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+++.++|++.+..  .++++++|+||++||++|+.+.|.++++++++  ++.|++||++.+.+ ++++|+|.++||+
T Consensus        15 v~~l~~~~~~~~~l~~--~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~~-~~~~~~v~~~Pt~   89 (117)
T 2xc2_A           15 LIELKQDGDLESLLEQ--HKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLEE-TARKYNISAMPTF   89 (117)
T ss_dssp             EEECCSTTHHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSHH-HHHHTTCCSSSEE
T ss_pred             eEEeCCHHHHHHHHHh--CCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccHH-HHHHcCCCccceE
Confidence            6677787899999843  37999999999999999999999999999988  89999999999998 9999999999985

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.72  E-value=2.2e-17  Score=113.45  Aligned_cols=74  Identities=26%  Similarity=0.569  Sum_probs=67.7

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .....+.++|++.+    +.+++++|+||++||++|+.+.|.++++++++ +++.|+.||++.+++ ++++|+|.++|++
T Consensus        10 ~~~~~~~~~f~~~~----~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~-~~~~~~v~~~Pt~   83 (112)
T 1syr_A           10 VKIVTSQAEFDSII----SQNELVIVDFFAEWCGPCKRIAPFYEECSKTY-TKMVFIKVDVDEVSE-VTEKENITSMPTF   83 (112)
T ss_dssp             CEEECSHHHHHHHH----HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTTHH-HHHHTTCCSSSEE
T ss_pred             EEEECCHHHHHHHH----ccCCeEEEEEECCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCHH-HHHHcCCCcccEE
Confidence            44556889999999    67999999999999999999999999999998 579999999999998 9999999999985

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=1.9e-17  Score=117.67  Aligned_cols=75  Identities=20%  Similarity=0.451  Sum_probs=67.1

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCC---eEEEEEECCCChHHHHHHcCCcc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPR---LRFYNVDVNAVPHKLVARAGVMV  158 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~~~la~~~~I~~  158 (162)
                      .+..+ +.++|++.+    ..++++||+||++||++|+.+.|.|+++++++++.   +.|+.||++.+.+ ++++|+|.+
T Consensus        18 ~v~~l-~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~-~~~~~~v~~   91 (140)
T 2dj1_A           18 GVWVL-NDGNFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASM-LASKFDVSG   91 (140)
T ss_dssp             TEEEC-CTTTHHHHH----TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHH-HHHHTTCCS
T ss_pred             CCEEc-ChHhHHHHH----hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHH-HHHHCCCCc
Confidence            35555 567899988    77999999999999999999999999999998543   9999999999988 999999999


Q ss_pred             cccC
Q 031285          159 SLMI  162 (162)
Q Consensus       159 ~Pti  162 (162)
                      +|++
T Consensus        92 ~Pt~   95 (140)
T 2dj1_A           92 YPTI   95 (140)
T ss_dssp             SSEE
T ss_pred             cCeE
Confidence            9985

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.71  E-value=2.5e-17  Score=114.44  Aligned_cols=75  Identities=23%  Similarity=0.424  Sum_probs=65.6

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+ +.++|.+.+.   ..+++++|+||++||++|+.+.|.|+++++++++++.|+.||++.+++ ++++|+|.++||+
T Consensus         5 v~~l-~~~~f~~~~~---~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~   79 (122)
T 3aps_A            5 SIDL-TPQTFNEKVL---QGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQ-TCQKAGIKAYPSV   79 (122)
T ss_dssp             SEEC-CHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             hhcC-CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHH-HHHHcCCCccceE
Confidence            3444 4577865442   679999999999999999999999999999997789999999999998 9999999999985

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.71  E-value=6.9e-18  Score=118.92  Aligned_cols=74  Identities=26%  Similarity=0.301  Sum_probs=61.3

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+.++ +.++|.+.+..+ ..+++|+|+|||+||++|+.+.|.|++++++| ++++|++||+++.    +++|+|+++||
T Consensus         4 ~v~~i-t~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~-~~v~f~kvd~d~~----~~~~~v~~~PT   76 (118)
T 3evi_A            4 ELREI-SGNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLLVNQHLSLLARKF-PETKFVKAIVNSC----IQHYHDNCLPT   76 (118)
T ss_dssp             SCEEC-CGGGHHHHTTTC-CTTCEEEEEEECTTSHHHHHHHHHHHHHHHHC-TTSEEEEEEGGGT----STTCCGGGCSE
T ss_pred             ceEEe-CHHHHHHHHHhc-CCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCCEEEEEEhHHh----HHHCCCCCCCE
Confidence            35566 557888777321 12349999999999999999999999999999 6899999999975    58999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        77 ~   77 (118)
T 3evi_A           77 I   77 (118)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.71  E-value=3.8e-17  Score=111.84  Aligned_cols=76  Identities=25%  Similarity=0.455  Sum_probs=65.4

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC-CChHHHHHHcCCcccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-AVPHKLVARAGVMVSL  160 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~la~~~~I~~~P  160 (162)
                      .+..+++ ++|++.+..  ..+++++|+||++||++|+.+.|.|+++++++ +++.|+.||++ .+.+ ++++|+|.++|
T Consensus         6 ~v~~l~~-~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~~-~~~~~~v~~~P   80 (111)
T 2pu9_C            6 KVTEVNK-DTFWPIVKA--AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEY-LDVIFLKLDCNQENKT-LAKELGIRVVP   80 (111)
T ss_dssp             SEEEECT-TTHHHHHTT--CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSTTHH-HHHHHCCSBSS
T ss_pred             ccEEech-HHHHHHHHh--cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHC-CCeEEEEEecCcchHH-HHHHcCCCeee
Confidence            3555644 788888832  26899999999999999999999999999999 56999999998 6777 99999999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      |+
T Consensus        81 t~   82 (111)
T 2pu9_C           81 TF   82 (111)
T ss_dssp             EE
T ss_pred             EE
Confidence            84

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.71  E-value=6.6e-18  Score=120.33  Aligned_cols=76  Identities=17%  Similarity=0.394  Sum_probs=67.4

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+++.++|++.+..  ..++++||+|||+||++|+.+.|.|+++++++  ++.|+.||++.+.+ ++++|+|.++||
T Consensus        21 ~v~~l~~~~~~~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~~-l~~~~~v~~~Pt   95 (133)
T 3cxg_A           21 IYIELKNTGSLNQVFSS--TQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPK-LNDQHNIKALPT   95 (133)
T ss_dssp             EEEECCCTTHHHHHHTC---CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCHH-HHHHTTCCSSSE
T ss_pred             cEEEecChhHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchHH-HHHhcCCCCCCE
Confidence            46778888899998842  34789999999999999999999999998887  69999999999998 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        96 ~   96 (133)
T 3cxg_A           96 F   96 (133)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.71  E-value=3.5e-17  Score=110.90  Aligned_cols=71  Identities=20%  Similarity=0.564  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+.   +.+++++|+||++||++|+.+.|.++++++++++++.++.+|++.+++ ++++|+|.++|++
T Consensus         7 ~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~   77 (107)
T 1dby_A            7 NDDTFKNVVL---ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN-VASEYGIRSIPTI   77 (107)
T ss_dssp             CHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHHTCCSSCEE
T ss_pred             cHHHHHHHHh---cCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH-HHHHCCCCcCCEE
Confidence            5578887762   678999999999999999999999999999997789999999999998 9999999999984

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=2e-17  Score=117.77  Aligned_cols=76  Identities=20%  Similarity=0.355  Sum_probs=66.6

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCc----
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVM----  157 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~I~----  157 (162)
                      +..+ +.++|++.+..  ..+++++|+|||+||++|+.+.|.|++++++|++ ++.|++||++.+++ ++++|+|.    
T Consensus         9 v~~l-~~~~f~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~-~~~~~~v~~~~~   84 (137)
T 2dj0_A            9 IKYF-NDKTIDEELER--DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTD-VSTRYKVSTSPL   84 (137)
T ss_dssp             CEEC-CTTHHHHHHHH--STTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHH-HHHHTTCCCCSS
T ss_pred             EEEc-cHhhHHHHHhc--CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHH-HHHHccCcccCC
Confidence            4445 45789988854  5566999999999999999999999999999964 79999999999998 99999999    


Q ss_pred             --ccccC
Q 031285          158 --VSLMI  162 (162)
Q Consensus       158 --~~Pti  162 (162)
                        ++||+
T Consensus        85 ~~~~Pt~   91 (137)
T 2dj0_A           85 TKQLPTL   91 (137)
T ss_dssp             SSCSSEE
T ss_pred             cCCCCEE
Confidence              99985

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.70  E-value=2.9e-17  Score=111.50  Aligned_cols=74  Identities=19%  Similarity=0.532  Sum_probs=65.3

Q ss_pred             eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ..+ +.++|++.+.   +.+++++|+||++||++|+.+.|.++++++++++++.|+.||++.+++ ++++|+|.++|++
T Consensus         5 ~~l-~~~~f~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~   78 (108)
T 2trx_A            5 IHL-TDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPTL   78 (108)
T ss_dssp             EEC-CTTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT-HHHHTTCCSSSEE
T ss_pred             eec-chhhHHHHHH---hcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH-HHHHcCCcccCEE
Confidence            344 3467876652   679999999999999999999999999999997789999999999998 9999999999985

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.70  E-value=7e-17  Score=113.31  Aligned_cols=76  Identities=24%  Similarity=0.396  Sum_probs=66.8

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+ +.++|++.+.   ..++++||+||++||++|+.+.|.|+++++++++.+.|+.||++.+.+ ++++|+|.++|+
T Consensus        18 ~v~~l-~~~~f~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~v~~~Pt   92 (130)
T 2dml_A           18 DVIEL-TPSNFNREVI---QSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQS-LGGQYGVQGFPT   92 (130)
T ss_dssp             SSEEC-CTTTHHHHTT---TCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHH-HHHHHTCCSSSE
T ss_pred             CcEEC-CHHHHHHHHh---cCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHH-HHHHcCCCccCE
Confidence            35555 4478888662   678999999999999999999999999999997679999999999998 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        93 ~   93 (130)
T 2dml_A           93 I   93 (130)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.70  E-value=1.3e-17  Score=117.78  Aligned_cols=76  Identities=20%  Similarity=0.313  Sum_probs=67.7

Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHH--HHHHHhCCCeEEEEEEC---CCChHHHHHHcCC---c
Q 031285           86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLE--KLAADYHPRLRFYNVDV---NAVPHKLVARAGV---M  157 (162)
Q Consensus        86 i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~--~l~~~~~~~v~~~~vd~---d~~~~~la~~~~I---~  157 (162)
                      +.+..++++.+..++..++++||+||++||++|+.+.|.|+  ++++++++++.++.||+   +.+.+ ++++|+|   .
T Consensus        12 ~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~-l~~~~~v~~~~   90 (133)
T 3fk8_A           12 ADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLE-LSQAYGDPIQD   90 (133)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHH-HHHHTTCGGGG
T ss_pred             cChHhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHH-HHHHhCCccCC
Confidence            34557788888776678999999999999999999999999  99999866899999999   88888 9999999   9


Q ss_pred             ccccC
Q 031285          158 VSLMI  162 (162)
Q Consensus       158 ~~Pti  162 (162)
                      ++|++
T Consensus        91 ~~Pt~   95 (133)
T 3fk8_A           91 GIPAV   95 (133)
T ss_dssp             CSSEE
T ss_pred             ccceE
Confidence            99984

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.70  E-value=3.4e-17  Score=112.00  Aligned_cols=75  Identities=25%  Similarity=0.585  Sum_probs=65.2

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+++ ++|.+.+.   +.+++++|+||++||++|+.+.|.++++++++++++.|+.+|++.+.+ ++++|+|.++|++
T Consensus         7 v~~l~~-~~~~~~~~---~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~   81 (112)
T 1t00_A            7 LKHVTD-DSFEQDVL---KNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPG-TAAKYGVMSIPTL   81 (112)
T ss_dssp             CEEECT-TTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             EEecch-hhHHHHHh---hCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHH-HHHhCCCCcccEE
Confidence            344543 56766552   678999999999999999999999999999997789999999999998 9999999999985

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.70  E-value=1.9e-17  Score=115.62  Aligned_cols=80  Identities=26%  Similarity=0.461  Sum_probs=72.6

Q ss_pred             CCCcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCC-eEEEEEECCCChHHHHHHcCC
Q 031285           78 PVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPR-LRFYNVDVNAVPHKLVARAGV  156 (162)
Q Consensus        78 ~~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~~~la~~~~I  156 (162)
                      +....+..+.+.++|++.+    +.+++++|+||++||++|+.+.|.|++++++++++ +.|+.||++.+++ ++++|+|
T Consensus        12 ~~~~~~~~i~~~~~f~~~l----~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~-~~~~~~v   86 (121)
T 2j23_A           12 VPRGSVQVISSYDQFKQVT----GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQ-IAQEVGI   86 (121)
T ss_dssp             CCCCCEEECCSHHHHHHHH----SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHH-HHHHHTC
T ss_pred             cCCcceEEcCCHHHHHHHH----cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHH-HHHHcCC
Confidence            3444688899999999999    78999999999999999999999999999998544 9999999999998 9999999


Q ss_pred             cccccC
Q 031285          157 MVSLMI  162 (162)
Q Consensus       157 ~~~Pti  162 (162)
                      .++|++
T Consensus        87 ~~~Pt~   92 (121)
T 2j23_A           87 RAMPTF   92 (121)
T ss_dssp             CSSSEE
T ss_pred             CcccEE
Confidence            999985

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.70  E-value=4.6e-17  Score=109.82  Aligned_cols=73  Identities=26%  Similarity=0.489  Sum_probs=65.5

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+ +.++|++.+     ++++++|+||++||++|+.+.|.++++++++++++.|+.||++.+++ ++++|+|.++|++
T Consensus         5 v~~l-~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~   77 (106)
T 3die_A            5 IVKV-TDADFDSKV-----ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPS-TAAKYEVMSIPTL   77 (106)
T ss_dssp             CEEC-CTTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSBSEE
T ss_pred             eEEC-CHHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHH-HHHhCCCcccCEE
Confidence            4444 556788877     58999999999999999999999999999997779999999999999 9999999999985

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=2.9e-17  Score=115.39  Aligned_cols=75  Identities=20%  Similarity=0.451  Sum_probs=66.2

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC----CCeEEEEEECCCChHHHHHHcCCcc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH----PRLRFYNVDVNAVPHKLVARAGVMV  158 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~~~~la~~~~I~~  158 (162)
                      +..++ .++|++.+.   ..++++||+||++||++|+.+.|.|++++++++    +++.|+.||++.+.+ ++++|+|.+
T Consensus         9 v~~l~-~~~~~~~~~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~v~~   83 (133)
T 1x5d_A            9 VIELT-DDSFDKNVL---DSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQV-LASRYGIRG   83 (133)
T ss_dssp             CEECC-TTHHHHHTT---TSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCH-HHHHHTCCS
T ss_pred             CEEcC-HhhHHHHHh---cCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHH-HHHhCCCCe
Confidence            44554 477888762   578999999999999999999999999999986    679999999999998 999999999


Q ss_pred             cccC
Q 031285          159 SLMI  162 (162)
Q Consensus       159 ~Pti  162 (162)
                      +|++
T Consensus        84 ~Pt~   87 (133)
T 1x5d_A           84 FPTI   87 (133)
T ss_dssp             SSEE
T ss_pred             eCeE
Confidence            9985

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.70  E-value=3.4e-17  Score=117.24  Aligned_cols=75  Identities=15%  Similarity=0.384  Sum_probs=66.4

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+ +.++|.+.+.   ..++++||+||++||++|+.+.|.|+++++++++++.|+.||++.+++ ++++|+|.++||+
T Consensus         8 v~~l-~~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~   82 (140)
T 3hz4_A            8 IIEF-EDMTWSQQVE---DSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPW-TAEKYGVQGTPTF   82 (140)
T ss_dssp             EEEE-CHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHH-HHHHHTCCEESEE
T ss_pred             eEEc-chHhHHHHHH---hCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHh-HHHHCCCCcCCEE
Confidence            4445 5678885442   679999999999999999999999999999997779999999999998 9999999999985

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.70  E-value=4.4e-17  Score=112.08  Aligned_cols=69  Identities=22%  Similarity=0.442  Sum_probs=63.2

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+     .+++++|+||++||++|+.+.|.++++++++++++.|+.||++.+.+ ++++|+|.++|++
T Consensus         7 ~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~   75 (112)
T 2voc_A            7 TDQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQE-TAGKYGVMSIPTL   75 (112)
T ss_dssp             CTTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCS-HHHHTTCCSBSEE
T ss_pred             cHHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH-HHHHcCCCcccEE
Confidence            346788777     58999999999999999999999999999997789999999999998 9999999999985

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.69  E-value=3e-17  Score=114.61  Aligned_cols=75  Identities=16%  Similarity=0.173  Sum_probs=67.4

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMV  158 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~  158 (162)
                      .++.+++.++|++++    +.+++++|+|||+|||+|+.+.|.|++++++  +++.|++||++++.+   .+|++|||++
T Consensus         7 ~~~~i~s~e~f~~ii----~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~h   80 (112)
T 3iv4_A            7 VAIKLSSIDQFEQVI----EENKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVKH   80 (112)
T ss_dssp             CEEECCSHHHHHHHH----HHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCCC
T ss_pred             ceeecCCHHHHHHHH----hcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCcc
Confidence            478899999999999    5699999999999999999999999999985  689999999999854   2899999994


Q ss_pred             -cccC
Q 031285          159 -SLMI  162 (162)
Q Consensus       159 -~Pti  162 (162)
                       +|++
T Consensus        81 ~sPq~   85 (112)
T 3iv4_A           81 ESPQA   85 (112)
T ss_dssp             CSSEE
T ss_pred             CCCeE
Confidence             9984

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.69  E-value=6.3e-17  Score=115.18  Aligned_cols=79  Identities=23%  Similarity=0.479  Sum_probs=67.0

Q ss_pred             CceecCCHHHHHHHHHHHh--------cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHH
Q 031285           82 PLTPIGSESQFDRVIAEAQ--------QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVAR  153 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~--------~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~  153 (162)
                      .+..+ +.++|.+.+....        ..++++||+||++||++|+.+.|.|+++++++++++.|+.||++.+.+ ++++
T Consensus        10 ~v~~l-~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~-l~~~   87 (136)
T 2l5l_A           10 KVIHL-TKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQE-LAGA   87 (136)
T ss_dssp             SEEEE-CHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHH
T ss_pred             ceEEe-cchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHH-HHHH
Confidence            34455 5678988872100        147899999999999999999999999999997789999999999998 9999


Q ss_pred             cCCcccccC
Q 031285          154 AGVMVSLMI  162 (162)
Q Consensus       154 ~~I~~~Pti  162 (162)
                      |+|.++|++
T Consensus        88 ~~v~~~Pt~   96 (136)
T 2l5l_A           88 FGIRSIPSI   96 (136)
T ss_dssp             TTCCSSCEE
T ss_pred             cCCCCCCEE
Confidence            999999985

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.69  E-value=2.9e-17  Score=115.64  Aligned_cols=61  Identities=21%  Similarity=0.480  Sum_probs=58.4

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .++++++|+||++||++|+.+.|.++++++++++++.++.||++.+.+ ++++|+|.++||+
T Consensus        40 ~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~-l~~~~~v~~~Pt~  100 (128)
T 3ul3_B           40 MKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNES-LARKFSVKSLPTI  100 (128)
T ss_dssp             SCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHH-HHHHTTCCSSSEE
T ss_pred             ccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHH-HHHHcCCCCcCEE
Confidence            789999999999999999999999999999997789999999999998 9999999999985

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.69  E-value=5.7e-17  Score=109.54  Aligned_cols=70  Identities=27%  Similarity=0.558  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+    +.+++++|+||++||++|+.+.|.++++++++++++.++.+|++.+++ ++++|+|.++|++
T Consensus         7 ~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~   76 (109)
T 2yzu_A            7 TDQNFDETL----GQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPK-TAMRYRVMSIPTV   76 (109)
T ss_dssp             CTTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             cHhHHHHHh----cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHh-HHHhCCCCcCCEE
Confidence            446788777    668999999999999999999999999999997689999999999998 9999999999985

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.69  E-value=2.1e-17  Score=113.62  Aligned_cols=71  Identities=21%  Similarity=0.361  Sum_probs=63.6

Q ss_pred             ecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           85 PIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        85 ~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .+.+.++| +.+    .++++++|+||++||++|+.+.|.++++++++ +++.|++||++.+.+ ++++|+|.++|++
T Consensus         6 ~~~~~~~f-~~~----~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~   76 (110)
T 2l6c_A            6 DITTEAGM-AHF----EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA-PQVAISSVDSEARPE-LMKELGFERVPTL   76 (110)
T ss_dssp             BCGGGCSH-HHH----TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTC-TTSCEEEEEGGGCHH-HHHHTTCCSSCEE
T ss_pred             ecCCHHHH-HHH----HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHC-CCcEEEEEcCcCCHH-HHHHcCCcccCEE
Confidence            34456778 666    67899999999999999999999999999998 589999999999988 9999999999985

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.69  E-value=7.5e-17  Score=112.40  Aligned_cols=76  Identities=26%  Similarity=0.510  Sum_probs=65.3

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC-CChHHHHHHcCCcccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-AVPHKLVARAGVMVSL  160 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~la~~~~I~~~P  160 (162)
                      .+..++ .++|.+.+..  .++++++|+||++||++|+.+.|.++++++++ +++.++.+|++ .+.+ ++++|+|.++|
T Consensus        19 ~v~~l~-~~~~~~~~~~--~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~-~~~~~~~vd~~~~~~~-~~~~~~v~~~P   93 (124)
T 1faa_A           19 KVTEVN-KDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY-LDVIFLKLDCNQENKT-LAKELGIRVVP   93 (124)
T ss_dssp             SEEEEC-TTTHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSTTHH-HHHHHCCSSSS
T ss_pred             ceEEec-chhHHHHHHh--cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHC-CCCEEEEEecCcchHH-HHHHcCCCeee
Confidence            345554 4678888843  47999999999999999999999999999999 57999999998 5667 99999999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      |+
T Consensus        94 t~   95 (124)
T 1faa_A           94 TF   95 (124)
T ss_dssp             EE
T ss_pred             EE
Confidence            84

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.68  E-value=7e-17  Score=109.75  Aligned_cols=73  Identities=23%  Similarity=0.457  Sum_probs=65.0

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCccc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      +..+ +.++|++.+    . +++++|+||++||++|+.+.|.++++++++.   +++.++.+|++.+.+ ++++|+|.++
T Consensus         7 v~~l-~~~~~~~~~----~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~v~~~   79 (111)
T 3uvt_A            7 VLAL-TENNFDDTI----A-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN-ICSKYSVRGY   79 (111)
T ss_dssp             SEEC-CTTTHHHHH----H-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHH-HHHHTTCCSS
T ss_pred             ceEc-ChhhHHHHh----c-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHh-HHHhcCCCcc
Confidence            4444 557899998    4 7899999999999999999999999999874   469999999999998 9999999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      |++
T Consensus        80 Pt~   82 (111)
T 3uvt_A           80 PTL   82 (111)
T ss_dssp             SEE
T ss_pred             cEE
Confidence            985

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.68  E-value=6.9e-17  Score=113.32  Aligned_cols=77  Identities=13%  Similarity=0.304  Sum_probs=68.3

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecC-------CChhhhhhhHhHHHHHHHhCCCeEEEEEEC-------CCChH
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMAS-------WCRKCIYLKPKLEKLAADYHPRLRFYNVDV-------NAVPH  148 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~-------WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-------d~~~~  148 (162)
                      ...+.+.++|++.+..  ..+++++|+|||+       ||++|+.+.|.|+++++++++++.|++||+       +.+.+
T Consensus         6 ~v~~~~~~~~~~~~~~--~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~   83 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQ--HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND   83 (123)
T ss_dssp             EEEEESHHHHHHHHHT--TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCH
T ss_pred             eEEeccHHHHHHHHHH--hCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHH
Confidence            4456688999999842  2599999999999       999999999999999999977899999999       77878


Q ss_pred             HHHHHcCCcccccC
Q 031285          149 KLVARAGVMVSLMI  162 (162)
Q Consensus       149 ~la~~~~I~~~Pti  162 (162)
                       ++++|+|.++||+
T Consensus        84 -~~~~~~i~~~Pt~   96 (123)
T 1wou_A           84 -FRKNLKVTAVPTL   96 (123)
T ss_dssp             -HHHHHCCCSSSEE
T ss_pred             -HHHHCCCCeeCEE
Confidence             9999999999985

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.68  E-value=3.1e-17  Score=114.80  Aligned_cols=80  Identities=24%  Similarity=0.487  Sum_probs=72.2

Q ss_pred             cCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccc
Q 031285           81 IPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSL  160 (162)
Q Consensus        81 ~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~P  160 (162)
                      ..+..+++.++|++.+..++..+++++|+||++||++|+.+.|.|+++++++ +++.|+.||++.+.+ ++++|+|.++|
T Consensus        14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~v~~~~~~~-~~~~~~v~~~P   91 (130)
T 1wmj_A           14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKF-PGAVFLKVDVDELKE-VAEKYNVEAMP   91 (130)
T ss_dssp             SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHC-TTBCCEECCTTTSGG-GHHHHTCCSSC
T ss_pred             cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHC-CCCEEEEEeccchHH-HHHHcCCCccc
Confidence            3566777889999999765557999999999999999999999999999998 589999999999988 99999999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      ++
T Consensus        92 t~   93 (130)
T 1wmj_A           92 TF   93 (130)
T ss_dssp             CC
T ss_pred             eE
Confidence            86

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.68  E-value=1.1e-16  Score=107.85  Aligned_cols=71  Identities=17%  Similarity=0.546  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+.   ..+++++|+||++||++|+.+.|.++++++++++++.++.+|++.+++ ++++|+|.++|++
T Consensus         6 ~~~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~   76 (105)
T 1fb6_A            6 NDSSWKEFVL---ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG-IATQYNIRSIPTV   76 (105)
T ss_dssp             CTTTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             hhhhHHHHHh---cCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHH-HHHhCCCCcccEE
Confidence            4467887662   568999999999999999999999999999997779999999999998 9999999999985

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.68  E-value=1.2e-16  Score=109.19  Aligned_cols=75  Identities=21%  Similarity=0.526  Sum_probs=66.8

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+ +.++|++.+.   ..+++++|+||++||++|+.+.|.|+++++++++++.|+.||++.+++ ++++|+|.++|++
T Consensus         9 v~~l-~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~-~~~~~~v~~~Pt~   83 (115)
T 1thx_A            9 VITI-TDAEFESEVL---KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT-TVKKYKVEGVPAL   83 (115)
T ss_dssp             EEEC-CGGGHHHHTT---TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH-HHHHTTCCSSSEE
T ss_pred             eEEe-eccchhhHhh---cCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHH-HHHHcCCCceeEE
Confidence            4555 5578887762   679999999999999999999999999999997679999999999998 9999999999985

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.67  E-value=6.4e-17  Score=124.44  Aligned_cols=77  Identities=18%  Similarity=0.504  Sum_probs=67.7

Q ss_pred             cCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccc
Q 031285           81 IPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSL  160 (162)
Q Consensus        81 ~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~P  160 (162)
                      .....+ +.++|++.+.   ++++++||+|||+||++|+.+.|.|+++++++++++.|++||++.+++ ++++|+|.++|
T Consensus        12 ~~~~~l-t~~~f~~~v~---~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~-l~~~~~v~~~P   86 (222)
T 3dxb_A           12 DKIIHL-TDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIP   86 (222)
T ss_dssp             CCCEEC-CTTTHHHHHT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTT-TGGGGTCCSBS
T ss_pred             CCceeC-CHHHHHHHHH---hcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHH-HHHHcCCCcCC
Confidence            344444 5678988652   789999999999999999999999999999997779999999999999 99999999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      |+
T Consensus        87 t~   88 (222)
T 3dxb_A           87 TL   88 (222)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.67  E-value=1.4e-16  Score=110.21  Aligned_cols=76  Identities=20%  Similarity=0.419  Sum_probs=66.0

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+++ ++|.+.+.   ..+++++|+||++||++|+.+.|.++++++++++++.|+.||++.+++ ++++|+|.++|+
T Consensus        13 ~v~~l~~-~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~i~~~Pt   87 (121)
T 2i1u_A           13 ATIKVTD-ASFATDVL---SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE-TARNFQVVSIPT   87 (121)
T ss_dssp             CSEECCT-TTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSSSE
T ss_pred             cceecCH-HHHHHHHH---hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHH-HHHhcCCCcCCE
Confidence            3455544 66766552   678999999999999999999999999999997789999999999998 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        88 ~   88 (121)
T 2i1u_A           88 L   88 (121)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.67  E-value=1.6e-16  Score=107.30  Aligned_cols=71  Identities=20%  Similarity=0.447  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+.   ..+++++|+||++||++|+.+.|.++++++++++++.|+.+|++.+++ ++++|+|.++|++
T Consensus         8 ~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~   78 (107)
T 2i4a_A            8 SDSSFDQDVL---KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPE-TPNAYQVRSIPTL   78 (107)
T ss_dssp             CTTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCH-HHHHTTCCSSSEE
T ss_pred             chhhhhHHHH---hCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHH-HHHhcCCCccCEE
Confidence            4467776652   679999999999999999999999999999997789999999999998 9999999999985

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=1.7e-16  Score=111.01  Aligned_cols=73  Identities=23%  Similarity=0.416  Sum_probs=63.3

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCcccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMVSL  160 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~I~~~P  160 (162)
                      .+..+ +.++|++.+    +  +.++|+|||+||++|+.+.|.|+++++++++ ++.|+.||++.+.+ ++++|+|.++|
T Consensus         8 ~v~~l-~~~~f~~~~----~--~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~-~~~~~~v~~~P   79 (126)
T 1x5e_A            8 NVRVI-TDENWRELL----E--GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPG-LSGRFIINALP   79 (126)
T ss_dssp             SEEEC-CTTTHHHHT----S--SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHH-HHHHTTCCSSS
T ss_pred             ccEEe-cHHHHHHHh----C--CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHH-HHHHcCCcccC
Confidence            35555 457888876    2  2499999999999999999999999999954 79999999999998 99999999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      |+
T Consensus        80 t~   81 (126)
T 1x5e_A           80 TI   81 (126)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.67  E-value=1e-16  Score=107.29  Aligned_cols=69  Identities=30%  Similarity=0.636  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+    +++++++|+||++||++|+.+.|.++++++++++ +.++.+|++.+.+ ++++|+|.++|++
T Consensus         5 ~~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~~v~~~Pt~   73 (104)
T 2e0q_A            5 DSKNFDSFL----ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPD-IAARYGVMSLPTV   73 (104)
T ss_dssp             CTTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHH-HHHHTTCCSSCEE
T ss_pred             CHHHHHHHH----hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCHH-HHHhCCccccCEE
Confidence            446788888    5689999999999999999999999999999954 9999999999998 9999999999985

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.67  E-value=8.5e-17  Score=114.90  Aligned_cols=76  Identities=24%  Similarity=0.234  Sum_probs=64.9

Q ss_pred             CcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccc
Q 031285           80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        80 ~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      ...+..+ +.++|.+.+..+ ..++++||+|||+||++|+.+.|.|++++++| +++.|++||++...    ++|+|.++
T Consensus         9 ~g~v~~i-~~~~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~~~~~----~~~~i~~~   81 (135)
T 2dbc_A            9 FGELREI-SGNQYVNEVTNA-EKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFVKAIVNSCI----EHYHDNCL   81 (135)
T ss_dssp             CCSCEEC-CHHHHHHHTTTC-CSSCEEEEEECCTTCHHHHHHHHHHHHHHHHC-SSEEEEEECCSSSC----SSCCSSCC
T ss_pred             CCceEEc-CHHHHHHHHHhc-CCCCEEEEEEECCCChHHHHHHHHHHHHHHHC-CCcEEEEEEhhcCc----ccCCCCCC
Confidence            3457777 788999988431 23579999999999999999999999999999 68999999999874    68999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      ||+
T Consensus        82 Pt~   84 (135)
T 2dbc_A           82 PTI   84 (135)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            985

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.67  E-value=7.4e-17  Score=114.14  Aligned_cols=75  Identities=17%  Similarity=0.488  Sum_probs=66.3

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+ +.++|++.+.   +.+++++|+||++||++|+.+.|.++++++++++++.|++||++.+++ ++++|+|.++|++
T Consensus        24 v~~l-~~~~f~~~~~---~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~   98 (128)
T 2o8v_B           24 IIHL-TDDSFDTDVL---KADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPTL   98 (128)
T ss_dssp             SEEE-CTTTHHHHTT---TCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCT-TSGGGTCCSSSEE
T ss_pred             cEec-ChhhHHHHHH---hcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHH-HHHHcCCCccCEE
Confidence            4455 4577886652   689999999999999999999999999999997789999999999998 9999999999985

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.66  E-value=1.1e-16  Score=122.95  Aligned_cols=75  Identities=21%  Similarity=0.456  Sum_probs=67.1

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCC---eEEEEEECCCChHHHHHHcCCcc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPR---LRFYNVDVNAVPHKLVARAGVMV  158 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~~~la~~~~I~~  158 (162)
                      .+..+ +.++|++.+    .++++++|+|||+||++|+.+.|.|+++++++++.   +.++.||++.+.+ ++++|+|++
T Consensus        16 ~v~~l-~~~~~~~~~----~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~v~~   89 (241)
T 3idv_A           16 GVLVL-NDANFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASV-LASRFDVSG   89 (241)
T ss_dssp             TEEEE-CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHH-HHHHTTCCS
T ss_pred             CcEEe-cccCHHHHH----hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHH-HHHhcCCCc
Confidence            34555 457899988    78999999999999999999999999999999544   9999999999998 999999999


Q ss_pred             cccC
Q 031285          159 SLMI  162 (162)
Q Consensus       159 ~Pti  162 (162)
                      +||+
T Consensus        90 ~Pt~   93 (241)
T 3idv_A           90 YPTI   93 (241)
T ss_dssp             SSEE
T ss_pred             CCEE
Confidence            9985

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.66  E-value=3.5e-16  Score=125.87  Aligned_cols=76  Identities=18%  Similarity=0.365  Sum_probs=66.9

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC--CChHHHHHHcCCccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN--AVPHKLVARAGVMVS  159 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d--~~~~~la~~~~I~~~  159 (162)
                      .+..+ +.++|++.+   .+.+++++|+|||+||++|+.+.|.|+++++++++.+.++.||++  .+.+ ++++|+|.++
T Consensus        18 ~vv~l-t~~~f~~~i---~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~-l~~~~~I~~~   92 (298)
T 3ed3_A           18 HISEL-TPKSFDKAI---HNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKA-LCAKYDVNGF   92 (298)
T ss_dssp             TCEEC-CHHHHHHHH---TSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHH-HHHHTTCCBS
T ss_pred             CeEEe-CHHHHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHH-HHHhCCCCcc
Confidence            45555 668999998   256899999999999999999999999999999777999999998  5667 9999999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      ||+
T Consensus        93 Pt~   95 (298)
T 3ed3_A           93 PTL   95 (298)
T ss_dssp             SEE
T ss_pred             ceE
Confidence            985

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.66  E-value=1.7e-16  Score=112.80  Aligned_cols=77  Identities=17%  Similarity=0.297  Sum_probs=66.4

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCC----ChHHHHHHc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNA----VPHKLVARA  154 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~----~~~~la~~~  154 (162)
                      ....+.+.++++..+..  ..++++||+||++||++|+.+.|.+   +++++++ +++.+++||++.    ..+ ++++|
T Consensus        12 ~f~~~~~~~~~~~~l~~--~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~-~~~~~~~vd~~~~~~~~~~-l~~~~   87 (134)
T 2fwh_A           12 NFTQIKTVDELNQALVE--AKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL-ADTVLLQANVTANDAQDVA-LLKHL   87 (134)
T ss_dssp             CCEECCSHHHHHHHHHH--HTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT-TTSEEEEEECTTCCHHHHH-HHHHT
T ss_pred             CcEEecCHHHHHHHHHH--hcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHh-cCcEEEEEeCCCCcchHHH-HHHHc
Confidence            45567788999998865  4599999999999999999999999   9999998 469999999954    445 99999


Q ss_pred             CCcccccC
Q 031285          155 GVMVSLMI  162 (162)
Q Consensus       155 ~I~~~Pti  162 (162)
                      +|.++|++
T Consensus        88 ~v~~~Pt~   95 (134)
T 2fwh_A           88 NVLGLPTI   95 (134)
T ss_dssp             TCCSSSEE
T ss_pred             CCCCCCEE
Confidence            99999984

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.66  E-value=2.1e-16  Score=120.40  Aligned_cols=75  Identities=19%  Similarity=0.293  Sum_probs=67.7

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+ +.++|+..+    ..++++||+|||+||++|+.+.|.|+++++++++++.|+.||++.+.+ ++++|+|.++||
T Consensus        98 ~v~~l-~~~~f~~~~----~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt  171 (210)
T 3apq_A           98 EIITL-ERREFDAAV----NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRM-LCRMKGVNSYPS  171 (210)
T ss_dssp             TSEEC-CHHHHHHHH----HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH-HHHHTTCCSSSE
T ss_pred             ceEEe-cHHHHHHHH----ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHH-HHHHcCCCcCCe
Confidence            34444 567899888    679999999999999999999999999999997789999999999998 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus       172 ~  172 (210)
T 3apq_A          172 L  172 (210)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.65  E-value=2.3e-16  Score=122.61  Aligned_cols=76  Identities=20%  Similarity=0.353  Sum_probs=65.4

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC---CeEEEEEEC--CCChHHHHHHcCC
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDV--NAVPHKLVARAGV  156 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~--d~~~~~la~~~~I  156 (162)
                      .+..+ +.++|++.+.   ..+++++|+|||+||++|+.+.|.|+++++++++   ++.|++||+  +.+.+ ++++|+|
T Consensus        13 ~v~~l-~~~~f~~~i~---~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~-l~~~~~v   87 (244)
T 3q6o_A           13 PLTLL-QADTVRGAVL---GSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSA-VCRDFNI   87 (244)
T ss_dssp             SSEEE-CTTTHHHHHS---SCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHH-HHHHTTC
T ss_pred             CceeC-ChhhHHHHHh---hCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHH-HHHHcCC
Confidence            34555 4468888772   6679999999999999999999999999999965   799999999  56777 9999999


Q ss_pred             cccccC
Q 031285          157 MVSLMI  162 (162)
Q Consensus       157 ~~~Pti  162 (162)
                      .++||+
T Consensus        88 ~~~Pt~   93 (244)
T 3q6o_A           88 PGFPTV   93 (244)
T ss_dssp             CSSSEE
T ss_pred             CccCEE
Confidence            999985

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.65  E-value=8e-17  Score=114.73  Aligned_cols=70  Identities=19%  Similarity=0.230  Sum_probs=62.2

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC---------CCChHHHHHH
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV---------NAVPHKLVAR  153 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~---------d~~~~~la~~  153 (162)
                      +..+ +.++|++.+    ..  +++|+|||+||++|+.+.|.|++++++++  +.|++||+         +.+.+ ++++
T Consensus        18 v~~l-~~~~~~~~~----~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~-l~~~   87 (135)
T 3emx_A           18 LIYI-TPEEFRQLL----QG--DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARL-EMNK   87 (135)
T ss_dssp             EEEC-CHHHHHHHH----TS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHH-HHHH
T ss_pred             eeec-CHHHHHHHh----CC--cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHH-HHHH
Confidence            4445 678999988    44  99999999999999999999999999983  99999999         77777 9999


Q ss_pred             cCCcccccC
Q 031285          154 AGVMVSLMI  162 (162)
Q Consensus       154 ~~I~~~Pti  162 (162)
                      |+|.++||+
T Consensus        88 ~~v~~~Pt~   96 (135)
T 3emx_A           88 AGVEGTPTL   96 (135)
T ss_dssp             HTCCSSSEE
T ss_pred             cCCceeCeE
Confidence            999999985

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.64  E-value=9.7e-17  Score=110.16  Aligned_cols=74  Identities=23%  Similarity=0.454  Sum_probs=65.3

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCccc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      +..+ +.++|++.+    .++++++|+||++||++|+.+.|.+++++++++   .++.++.+|++.+.+ ++++|+|.++
T Consensus         9 v~~l-~~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-~~~~~~v~~~   82 (120)
T 1mek_A            9 VLVL-RKSNFAEAL----AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESD-LAQQYGVRGY   82 (120)
T ss_dssp             EEEC-CTTTHHHHH----HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCS-SHHHHTCCSS
T ss_pred             cEEe-chhhHHHHH----ccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHH-HHHHCCCCcc
Confidence            3444 457888888    568999999999999999999999999999984   469999999999988 9999999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      |++
T Consensus        83 Pt~   85 (120)
T 1mek_A           83 PTI   85 (120)
T ss_dssp             SEE
T ss_pred             cEE
Confidence            985

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.64  E-value=7.9e-17  Score=111.66  Aligned_cols=68  Identities=12%  Similarity=0.191  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC------hHHHHHHcCCccccc
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV------PHKLVARAGVMVSLM  161 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~------~~~la~~~~I~~~Pt  161 (162)
                      +.++|++.+    .++++++|+|||+||++|+.+.|.|++++++++..+.+  +|++..      .+ ++++|+|.++||
T Consensus        18 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~--~~~~~~~~~~~~~~-~~~~~~i~~~Pt   90 (118)
T 1zma_A           18 TVVRAQEAL----DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYF--INSEEPSQLNDLQA-FRSRYGIPTVPG   90 (118)
T ss_dssp             CHHHHHHHH----HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEE--EETTCGGGHHHHHH-HHHHHTCCSSCE
T ss_pred             CHHHHHHHH----hCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEE--EECCCcCcHHHHHH-HHHHcCCCCCCe
Confidence            668898888    67899999999999999999999999999998544544  555443      24 889999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        91 ~   91 (118)
T 1zma_A           91 F   91 (118)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.63  E-value=8.1e-17  Score=119.80  Aligned_cols=69  Identities=10%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcC---CcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAG---VMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~---I~~~Pti  162 (162)
                      +.+.+.+..  .++++++|+|||+|||||+.+.|.|+++++++ +++.|+.||+|++++ ++.+|+   |.++||+
T Consensus        43 ~~~~~~l~~--~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~-~~v~~~~v~~d~~~~-~~~~~~~~~v~~iPt~  114 (167)
T 1z6n_A           43 SALTERLQR--IERRYRLLVAGEMWCPDCQINLAALDFAQRLQ-PNIELAIISKGRAED-DLRQRLALERIAIPLV  114 (167)
T ss_dssp             HHHHHHHHT--CCSCEEEEEECCTTCHHHHHHHHHHHHHHHHC-TTEEEEEECHHHHHH-HTTTTTTCSSCCSSEE
T ss_pred             HHHHHHHHH--hCCCEEEEEEECCCChhHHHHHHHHHHHHHHC-CCcEEEEEECCCCHH-HHHHHHHcCCCCcCeE
Confidence            344444522  46899999999999999999999999999998 689999999999888 889897   9999984

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.63  E-value=3.4e-16  Score=109.44  Aligned_cols=61  Identities=11%  Similarity=0.225  Sum_probs=57.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEE--CCCChHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD--VNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd--~d~~~~~la~~~~I~~~Pti  162 (162)
                      ..+++++|+||++||++|+.+.|.++++++++++++.|+.||  ++.+.+ ++++|+|.++|++
T Consensus        24 ~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~-~~~~~~v~~~Pt~   86 (126)
T 2l57_A           24 KEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNID-LAYKYDANIVPTT   86 (126)
T ss_dssp             CSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHH-HHHHTTCCSSSEE
T ss_pred             hCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHH-HHHHcCCcceeEE
Confidence            679999999999999999999999999999997789999999  888888 9999999999984

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.62  E-value=4.8e-16  Score=128.43  Aligned_cols=74  Identities=18%  Similarity=0.389  Sum_probs=64.9

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC------CCeEEEEEECCCChHHHHHHcCC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH------PRLRFYNVDVNAVPHKLVARAGV  156 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~------~~v~~~~vd~d~~~~~la~~~~I  156 (162)
                      +..+ +.++|++.+    +++++++|+|||+||++|+.+.|.|++++++++      +++.|++||++.+.+ ++++|+|
T Consensus         7 v~~l-~~~~f~~~~----~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~-l~~~~~v   80 (382)
T 2r2j_A            7 ITSL-DTENIDEIL----NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSD-IAQRYRI   80 (382)
T ss_dssp             -CBC-CTTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHH-HHHHTTC
T ss_pred             eEEC-CHHHHHHHH----hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHH-HHHhcCC
Confidence            3444 447899888    568999999999999999999999999999983      459999999999988 9999999


Q ss_pred             cccccC
Q 031285          157 MVSLMI  162 (162)
Q Consensus       157 ~~~Pti  162 (162)
                      +++||+
T Consensus        81 ~~~Pt~   86 (382)
T 2r2j_A           81 SKYPTL   86 (382)
T ss_dssp             CEESEE
T ss_pred             CcCCEE
Confidence            999985

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.62  E-value=2.1e-16  Score=124.35  Aligned_cols=78  Identities=21%  Similarity=0.220  Sum_probs=68.2

Q ss_pred             cCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccc
Q 031285           81 IPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSL  160 (162)
Q Consensus        81 ~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~P  160 (162)
                      ..+..+.+.++|.+.+..+ ..+++|||+|||+||++|+.+.|.|++++++| ++++|++||++. .+ ++++|+|.++|
T Consensus       112 G~V~ei~s~~~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~-~~v~f~kVd~d~-~~-l~~~~~I~~~P  187 (245)
T 1a0r_P          112 GFVYELESGEQFLETIEKE-QKITTIVVHIYEDGIKGCDALNSSLICLAAEY-PMVKFCKIKASN-TG-AGDRFSSDVLP  187 (245)
T ss_dssp             CSEEECCSHHHHHHHHHSS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHHHC-TTSEEEEEEHHH-HC-CTTSSCTTTCS
T ss_pred             CeEEEeCCHHHHHHHHHHh-cCCCEEEEEEECCCChHHHHHHHHHHHHHHHC-CCCEEEEEeCCc-HH-HHHHCCCCCCC
Confidence            3567787889999998421 24899999999999999999999999999999 579999999987 56 89999999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      |+
T Consensus       188 Tl  189 (245)
T 1a0r_P          188 TL  189 (245)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=2.4e-16  Score=110.96  Aligned_cols=76  Identities=24%  Similarity=0.401  Sum_probs=64.6

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCCChHHHHHHcCCccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      .+..++ .++|++.+.   ..+++++|+||++||++|+.+.|.|++++++++  +++.|+.||++.+.. ++++|+|.++
T Consensus         8 ~v~~l~-~~~~~~~~~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~   82 (133)
T 2dj3_A            8 PVKVVV-GKTFDAIVM---DPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDI-TNDQYKVEGF   82 (133)
T ss_dssp             SSEECC-TTTCCCCCT---CTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCC-CCSSCCCSSS
T ss_pred             ceEEEc-CCCHHHHhc---cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHH-HHhhcCCCcC
Confidence            344453 356776661   458999999999999999999999999999996  469999999999988 8899999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      ||+
T Consensus        83 Pt~   85 (133)
T 2dj3_A           83 PTI   85 (133)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            985

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.61  E-value=2.7e-16  Score=115.76  Aligned_cols=74  Identities=14%  Similarity=0.198  Sum_probs=59.6

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCChHHH--------------
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPHKL--------------  150 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~l--------------  150 (162)
                      +..+|++.+..++.+++++||+|||+||++|+.+.+.+   .++.+.+++++.+++||++...+ +              
T Consensus        32 ~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~-~~~~~~~~~~~~~~~  110 (172)
T 3f9u_A           32 KFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTP-LTEPVKIMENGTERT  110 (172)
T ss_dssp             CBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCE-EEEEEEEEETTEEEE
T ss_pred             chhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccc-cchhhhhhhcchhhh
Confidence            44567777776668899999999999999999975444   66666664479999999988764 4              


Q ss_pred             ------------HHHcCCcccccC
Q 031285          151 ------------VARAGVMVSLMI  162 (162)
Q Consensus       151 ------------a~~~~I~~~Pti  162 (162)
                                  +++|+|.++||+
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~Pt~  134 (172)
T 3f9u_A          111 LRTVGDKWSYLQRVKFGANAQPFY  134 (172)
T ss_dssp             EEEHHHHHHHHHHHHHSCCCSSEE
T ss_pred             hhhhhhhhhHHHHHHcCCCCcceE
Confidence                        799999999984

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.60  E-value=3.5e-16  Score=101.68  Aligned_cols=59  Identities=19%  Similarity=0.309  Sum_probs=55.1

Q ss_pred             CCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ..+++|+||++||++|+.+.|.++++++++++++.++.+|++++++ ++++|+|.++|++
T Consensus         2 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~   60 (85)
T 1fo5_A            2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ-KAMEYGIMAVPTI   60 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC-TTTSTTTCCSSEE
T ss_pred             CceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHH-HHHHCCCcccCEE
Confidence            3578999999999999999999999999997789999999999988 9999999999985

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.60  E-value=2.7e-16  Score=121.42  Aligned_cols=77  Identities=22%  Similarity=0.271  Sum_probs=68.3

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+.+.++|.+.+... ..+++|||+||++||++|+.+.|.|++++++| +++.|++||++ +++ ++++|+|.++||
T Consensus       100 ~v~~i~~~~~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~-~~v~f~~vd~~-~~~-l~~~~~i~~~PT  175 (217)
T 2trc_P          100 FVYELETGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNSSLECLAAEY-PMVKFCKIRAS-NTG-AGDRFSSDVLPT  175 (217)
T ss_dssp             SEEECCSHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHTTC-TTSEEEEEEHH-HHT-CSTTSCGGGCSE
T ss_pred             eEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEEECC-cHH-HHHHCCCCCCCE
Confidence            467787889999998542 34589999999999999999999999999999 68999999999 666 899999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus       176 l  176 (217)
T 2trc_P          176 L  176 (217)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.60  E-value=2.7e-15  Score=127.65  Aligned_cols=75  Identities=17%  Similarity=0.369  Sum_probs=68.0

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCcccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMVSL  160 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~I~~~P  160 (162)
                      .+..+ +.++|++.+    +.+++++|+|||+||++|+.+.|.|+++++++++ ++.|++||++.+.+ ++++|+|+++|
T Consensus        15 ~v~~l-~~~~f~~~~----~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~P   88 (504)
T 2b5e_A           15 AVVKL-ATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD-LCMEHNIPGFP   88 (504)
T ss_dssp             SCEEC-CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHH-HHHHTTCCSSS
T ss_pred             CcEEC-CHHHHHHHH----hcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHH-HHHhcCCCcCC
Confidence            35555 557899998    7899999999999999999999999999999976 49999999999998 99999999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      |+
T Consensus        89 t~   90 (504)
T 2b5e_A           89 SL   90 (504)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.60  E-value=3.2e-16  Score=101.86  Aligned_cols=57  Identities=14%  Similarity=0.239  Sum_probs=53.7

Q ss_pred             eEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          105 SVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       105 ~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +++|+||++||++|+.+.|.++++++++++++.++.+|++++++ ++++|+|.++|++
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~   59 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE-KAIEYGLMAVPAI   59 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG-GGGGTCSSCSSEE
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHH-HHHhCCceeeCEE
Confidence            46899999999999999999999999997789999999999998 9999999999985

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.59  E-value=3.2e-16  Score=110.17  Aligned_cols=75  Identities=19%  Similarity=0.535  Sum_probs=59.7

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCCh--------------hhhhhhHhHHHHHHHhCCCeEEEEEECCCChH
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCR--------------KCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH  148 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~--------------~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~  148 (162)
                      +..+ +.++|++.+   .+++++++|+|||+||+              +|+.+.|.++++++++++++.+++||++.+++
T Consensus         5 v~~l-~~~~f~~~~---~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~   80 (123)
T 1oaz_A            5 IIHL-TDDSFDTDV---LKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG   80 (123)
T ss_dssp             CEEC-CSTTHHHHT---TSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTT
T ss_pred             cEec-ChhhHHHHH---HhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHH
Confidence            3444 446787655   27899999999999999              99999999999999997689999999999998


Q ss_pred             HHHHHcCCcccccC
Q 031285          149 KLVARAGVMVSLMI  162 (162)
Q Consensus       149 ~la~~~~I~~~Pti  162 (162)
                       ++++|+|.++|++
T Consensus        81 -l~~~~~v~~~Pt~   93 (123)
T 1oaz_A           81 -TAPKYGIRGIPTL   93 (123)
T ss_dssp             -TGGGGTCCBSSEE
T ss_pred             -HHHHcCCCccCEE
Confidence             9999999999985

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.59  E-value=2.1e-15  Score=115.70  Aligned_cols=71  Identities=25%  Similarity=0.457  Sum_probs=64.3

Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC---CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           87 GSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        87 ~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .+.++|++.+    ..+++++|+|||+||++|+.+.|.++++++++.+   ++.|++||++.+.+ ++++|+|.++||+
T Consensus       135 ~~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~  208 (241)
T 3idv_A          135 LTKENFDEVV----NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETD-LAKRFDVSGYPTL  208 (241)
T ss_dssp             CCTTTHHHHH----HHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             ccHHHHHHhh----ccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHH-HHHHcCCcccCEE
Confidence            3567899988    5688999999999999999999999999999843   49999999999998 9999999999985

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.58  E-value=2.7e-15  Score=122.44  Aligned_cols=73  Identities=16%  Similarity=0.215  Sum_probs=65.3

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHh-------HHHHHHHhCC-CeEEEEEECCCChHHHHHHc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPK-------LEKLAADYHP-RLRFYNVDVNAVPHKLVARA  154 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~-------l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~  154 (162)
                      +..+ +.++|++.+    +++++++|+|||+||+ |+.++|.       |+++++++++ ++.|++||++.+.+ +|++|
T Consensus        13 v~~l-~~~~f~~~i----~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~-l~~~~   85 (350)
T 1sji_A           13 VVSL-TEKNFKQVL----KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAK-LAKKL   85 (350)
T ss_dssp             CEEE-CHHHHHHHH----TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHH-HHHHH
T ss_pred             cEEC-CHHHHHHHH----hhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHH-HHHhc
Confidence            3444 668899998    7799999999999999 9999999       8999999855 59999999999998 99999


Q ss_pred             CCcccccC
Q 031285          155 GVMVSLMI  162 (162)
Q Consensus       155 ~I~~~Pti  162 (162)
                      +|+++||+
T Consensus        86 ~v~~~Pt~   93 (350)
T 1sji_A           86 GFDEEGSL   93 (350)
T ss_dssp             TCCSTTEE
T ss_pred             CCCccceE
Confidence            99999985

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.58  E-value=4.3e-16  Score=112.86  Aligned_cols=73  Identities=14%  Similarity=0.111  Sum_probs=54.0

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCC--ChhhhhhhHhHHHHHHHhCCCeE--EEEEECCCChHHHHHHcCCcc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASW--CRKCIYLKPKLEKLAADYHPRLR--FYNVDVNAVPHKLVARAGVMV  158 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~W--C~~C~~~~p~l~~l~~~~~~~v~--~~~vd~d~~~~~la~~~~I~~  158 (162)
                      +..+++ ++|++.+    ..++.++|+||++|  |++|+.+.|.|++++++| +++.  |++||+|++++ ++++|+|++
T Consensus        19 ~~~l~~-~~f~~~i----~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~~-la~~~~V~~   91 (142)
T 2es7_A           19 WQPVEA-STVDDWI----KRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEA-IGDRFNVRR   91 (142)
T ss_dssp             CEECCC-C------------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHHH-HHHTTTCCS
T ss_pred             Cccccc-ccHHHHH----HhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCHH-HHHhcCCCc
Confidence            455544 7899988    55667889999988  999999999999999999 8889  99999999988 999999999


Q ss_pred             cccC
Q 031285          159 SLMI  162 (162)
Q Consensus       159 ~Pti  162 (162)
                      +||+
T Consensus        92 iPT~   95 (142)
T 2es7_A           92 FPAT   95 (142)
T ss_dssp             SSEE
T ss_pred             CCeE
Confidence            9985

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.57  E-value=2.4e-15  Score=127.03  Aligned_cols=70  Identities=20%  Similarity=0.350  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHhcCC---CeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLD---ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~---~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+    ..+   ++++|+|||+||++|+.+.|.|+++++++++.+.|++||++.+.+ +|++|+|+++||+
T Consensus         7 ~~~~f~~~i----~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Ptl   79 (481)
T 3f8u_A            7 TDDNFESRI----SDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTN-TCNKYGVSGYPTL   79 (481)
T ss_dssp             CTTTHHHHT----TCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHH-HHHHTTCCEESEE
T ss_pred             cHHHHHHHH----HhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHH-HHHhcCCCCCCEE
Confidence            457899998    455   999999999999999999999999999997779999999999999 9999999999985

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.57  E-value=3.5e-15  Score=113.86  Aligned_cols=70  Identities=19%  Similarity=0.253  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHhcCCCeE-EEEEecCCChhhhhhhHhHHHHHHHhC----CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESV-IIVWMASWCRKCIYLKPKLEKLAADYH----PRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~v-lV~F~a~WC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.+.++.+.    ..++++ +|+|||+||++|+.+.|.+++++++++    +++.++.||++.+++ ++++|+|.++||+
T Consensus       122 ~~~~~~~~~----~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~  196 (226)
T 1a8l_A          122 MDETKQAIR----NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE-WADQYNVMAVPKI  196 (226)
T ss_dssp             CHHHHHHHT----TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH-HHHHTTCCSSCEE
T ss_pred             CHHHHHHHH----hcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHH-HHHhCCCcccCeE
Confidence            445666655    555666 999999999999999999999999995    589999999999988 9999999999985

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.34  E-value=2.3e-16  Score=105.82  Aligned_cols=70  Identities=24%  Similarity=0.603  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .++|.+.+.   +.+++++|.||++||++|+.+.|.++++++++++++.++.+|++.+.+ ++++|+|.++|++
T Consensus         8 ~~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~v~~~Pt~   77 (106)
T 2yj7_A            8 DENFEQEVL---KSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPN-TAAQYGIRSIPTL   77 (106)
Confidence            356665542   678999999999999999999999999999996689999999999988 9999999999985

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.56  E-value=2.6e-15  Score=106.86  Aligned_cols=69  Identities=10%  Similarity=0.133  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcc--cccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV--SLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~--~Pti  162 (162)
                      +.++|++.+    +.+.+++|+|||+ |++|+.+.|.|++++++|++++.|+++|++++++ ++++|||++  +|++
T Consensus        12 t~~~f~~~~----~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~-~a~~~gi~~~~iPtl   82 (133)
T 2djk_A           12 GPETYSDYM----SAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGA-HAGNLNLKTDKFPAF   82 (133)
T ss_dssp             CHHHHHHHH----HTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGG-GTTTTTCCSSSSSEE
T ss_pred             ChHHHHHHh----cCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHH-HHHHcCCCcccCCEE
Confidence            567898887    6789999999999 8999999999999999998899999999999998 999999999  9985

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=1.3e-15  Score=106.77  Aligned_cols=72  Identities=17%  Similarity=0.315  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCC--ChHHHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNA--VPHKLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~--~~~~la~~~~I~~~Pti  162 (162)
                      .+|++.+..+...++++||+||++||++|+.+.|.+   +++.+.++.++.++.||++.  +.+ ++++|+|.++|++
T Consensus        14 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~~~v~~~Pt~   90 (130)
T 2kuc_A           14 LSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVE-LRKKYGVHAYPTL   90 (130)
T ss_dssp             CCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHH-HHHHTTCCSSCEE
T ss_pred             CCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHH-HHHHcCCCCCCEE
Confidence            456666654435789999999999999999999999   77877775678999999984  455 9999999999985

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.55  E-value=9.3e-16  Score=106.09  Aligned_cols=72  Identities=26%  Similarity=0.454  Sum_probs=60.2

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-----CeEEEEEECCCChHHHHHHcCCc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-----RLRFYNVDVNAVPHKLVARAGVM  157 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-----~v~~~~vd~d~~~~~la~~~~I~  157 (162)
                      +..++ .++|++.+   ..++++++|+|||+||++|+.+.|.|+++++++++     ++.|++||++.++  +++  +|.
T Consensus         9 v~~l~-~~~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~--~v~   80 (121)
T 2djj_A            9 VTVVV-AKNYNEIV---LDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND--VPD--EIQ   80 (121)
T ss_dssp             SEECC-TTTTTTSS---SCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC--CSS--CCS
T ss_pred             eEEec-ccCHHHHh---hcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc--ccc--ccC
Confidence            44453 36777765   16789999999999999999999999999999965     7999999999875  454  999


Q ss_pred             ccccC
Q 031285          158 VSLMI  162 (162)
Q Consensus       158 ~~Pti  162 (162)
                      ++||+
T Consensus        81 ~~Pt~   85 (121)
T 2djj_A           81 GFPTI   85 (121)
T ss_dssp             SSSEE
T ss_pred             cCCeE
Confidence            99985

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.54  E-value=4.4e-15  Score=111.11  Aligned_cols=70  Identities=17%  Similarity=0.183  Sum_probs=59.0

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhH-hH--HHHHHHhCCCeEEEEEECCCChHHHHHHc--------CC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKP-KL--EKLAADYHPRLRFYNVDVNAVPHKLVARA--------GV  156 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p-~l--~~l~~~~~~~v~~~~vd~d~~~~~la~~~--------~I  156 (162)
                      +.+.|+...    ..+++|+|+|||+||++|+.+.| .|  .++++.+.+++.+++||.++.++ +++.|        ||
T Consensus        28 ~~ea~~~A~----~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~-l~~~y~~~~q~~~gv  102 (173)
T 3ira_A           28 GEEAFEKAR----KENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPD-IDNIYMTVCQIILGR  102 (173)
T ss_dssp             SHHHHHHHH----HHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHH-HHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHH----HhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCc-HHHHHHHHHHHHcCC
Confidence            345666666    77999999999999999999998 33  57777775579999999999998 89888        99


Q ss_pred             cccccC
Q 031285          157 MVSLMI  162 (162)
Q Consensus       157 ~~~Pti  162 (162)
                      .++|++
T Consensus       103 ~g~Pt~  108 (173)
T 3ira_A          103 GGWPLN  108 (173)
T ss_dssp             CCSSEE
T ss_pred             CCCcce
Confidence            999984

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.54  E-value=7.9e-15  Score=126.24  Aligned_cols=76  Identities=18%  Similarity=0.318  Sum_probs=65.2

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC---CeEEEEEECCC--ChHHHHHHcCC
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP---RLRFYNVDVNA--VPHKLVARAGV  156 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~--~~~~la~~~~I  156 (162)
                      .+..+ +.++|++.+.   +.+++++|+|||+||++|+.++|.|+++++++++   .+.|++||++.  +.+ ++++|+|
T Consensus        13 ~V~~L-t~~~f~~~v~---~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~-l~~~~~V   87 (519)
T 3t58_A           13 PLTLL-DADSVRPTVL---GSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSA-VCREFNI   87 (519)
T ss_dssp             SSEEE-CTTTHHHHHS---SCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHH-HHHHTTC
T ss_pred             CcEEC-ChHHHHHHHH---hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHH-HHHHcCC
Confidence            35555 4467888772   5679999999999999999999999999999965   79999999964  667 9999999


Q ss_pred             cccccC
Q 031285          157 MVSLMI  162 (162)
Q Consensus       157 ~~~Pti  162 (162)
                      .++||+
T Consensus        88 ~~~PTl   93 (519)
T 3t58_A           88 AGFPTV   93 (519)
T ss_dssp             CSBSEE
T ss_pred             cccCEE
Confidence            999985

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.54  E-value=9.1e-15  Score=120.41  Aligned_cols=74  Identities=14%  Similarity=0.100  Sum_probs=63.1

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhh------HhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLK------PKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAG  155 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~------p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~  155 (162)
                      +..+ +.++|++.+    +.+++++|+|||+|||+|+...      |.++++++.+++ ++.|++||++.+++ +|++|+
T Consensus        15 v~~l-t~~~f~~~i----~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~-l~~~~~   88 (367)
T 3us3_A           15 VINV-NAKNYKNVF----KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAA-VAKKLG   88 (367)
T ss_dssp             CEEC-CTTTHHHHH----HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHH-HHHHHT
T ss_pred             cEEC-CHHHHHHHH----hhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHH-HHHHcC
Confidence            3444 557899999    6689999999999999974433      689999999855 59999999999999 999999


Q ss_pred             CcccccC
Q 031285          156 VMVSLMI  162 (162)
Q Consensus       156 I~~~Pti  162 (162)
                      |+++||+
T Consensus        89 V~~~PTl   95 (367)
T 3us3_A           89 LTEEDSI   95 (367)
T ss_dssp             CCSTTEE
T ss_pred             CCcCceE
Confidence            9999985

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.53  E-value=7.4e-15  Score=106.86  Aligned_cols=70  Identities=16%  Similarity=0.295  Sum_probs=58.7

Q ss_pred             HHHHHHHHhcCCCeEEEEEe-cCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCCh-----------HHHHHHcCC
Q 031285           92 FDRVIAEAQQLDESVIIVWM-ASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP-----------HKLVARAGV  156 (162)
Q Consensus        92 f~~~l~~~~~~~~~vlV~F~-a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~-----------~~la~~~~I  156 (162)
                      +.+.+..++..+++++|+|| |+||++|+.+.|.+   +++.+.++.++.++.||++...           + ++++|+|
T Consensus        36 ~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~-l~~~~~v  114 (154)
T 2ju5_A           36 YAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQE-LKAQYKV  114 (154)
T ss_dssp             HHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHH-HHHHTTC
T ss_pred             HHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHH-HHHHcCC
Confidence            45555444467999999999 99999999999999   7887766567999999998764           5 9999999


Q ss_pred             cccccC
Q 031285          157 MVSLMI  162 (162)
Q Consensus       157 ~~~Pti  162 (162)
                      .++|++
T Consensus       115 ~~~Pt~  120 (154)
T 2ju5_A          115 TGFPEL  120 (154)
T ss_dssp             CSSSEE
T ss_pred             CCCCEE
Confidence            999984

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.29  E-value=6.1e-16  Score=108.57  Aligned_cols=61  Identities=15%  Similarity=0.198  Sum_probs=55.3

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECC--CChHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVN--AVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d--~~~~~la~~~~I~~~Pti  162 (162)
                      ..++++||+|||+||++|+.+.|.+   +++++.+++++.++.||++  .+.+ ++++|+|.++|++
T Consensus        17 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~~~v~~~Pt~   82 (130)
T 2lst_A           17 AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQE-LARRYRVPGTPTF   82 (130)
Confidence            7899999999999999999999999   9999998667999999995  4556 9999999999985

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.53  E-value=1.5e-14  Score=92.60  Aligned_cols=53  Identities=13%  Similarity=0.201  Sum_probs=48.5

Q ss_pred             EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ..|+||++||++|+.+.|.++++++++++++.++++|   +.+ ++++|+|.++||+
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~-~~~~~~v~~~Pt~   54 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMD-QILEAGLTALPGL   54 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHH-HHHHHTCSSSSCE
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHH-HHHHCCCCcCCEE
Confidence            4689999999999999999999999997789999998   666 9999999999985

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.53  E-value=1.7e-14  Score=110.51  Aligned_cols=69  Identities=17%  Similarity=0.166  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHhcCCCeE-EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESV-IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~v-lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.+.|+.++    ..++++ +|+||++||++|+.+.|.++++++++ +++.++.||++.+++ ++++|+|.++|++
T Consensus       124 ~~~~~~~~~----~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~  193 (229)
T 2ywm_A          124 SEKTLELLQ----VVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAN-DYITSKVIDASENQD-LAEQFQVVGVPKI  193 (229)
T ss_dssp             CHHHHHHHT----TCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHC-TTEEEEEEEGGGCHH-HHHHTTCCSSSEE
T ss_pred             CHHHHHHHH----hcCCCeEEEEEECCCCcchHHHHHHHHHHHHHC-CCeEEEEEECCCCHH-HHHHcCCcccCEE
Confidence            456777776    445555 88999999999999999999999999 789999999999999 9999999999985

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.52  E-value=5.1e-15  Score=125.84  Aligned_cols=77  Identities=14%  Similarity=0.171  Sum_probs=65.5

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---C-----CeEEEEEECCCChHHHHHH
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---P-----RLRFYNVDVNAVPHKLVAR  153 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~-----~v~~~~vd~d~~~~~la~~  153 (162)
                      .+..+ +.++|++.+..  ..++++||+|||+||++|+.+.|.|++++++++   +     ++.|++||++.+++ ++++
T Consensus        24 ~V~~L-t~~~F~~~l~~--~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~-la~~   99 (470)
T 3qcp_A           24 SVVDL-SGDDFSRVHRV--APLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVD-LCRK   99 (470)
T ss_dssp             TEEEC-SCSCGGGTCTT--GGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHH-HHHH
T ss_pred             CcEEC-CHHHHHHHHHh--CCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHH-HHHH
Confidence            35555 44678888732  345899999999999999999999999999995   2     49999999999998 9999


Q ss_pred             cCCcccccC
Q 031285          154 AGVMVSLMI  162 (162)
Q Consensus       154 ~~I~~~Pti  162 (162)
                      |+|.++||+
T Consensus       100 y~V~~~PTl  108 (470)
T 3qcp_A          100 YDINFVPRL  108 (470)
T ss_dssp             TTCCSSCEE
T ss_pred             cCCCccCeE
Confidence            999999985

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.52  E-value=1.7e-15  Score=104.41  Aligned_cols=55  Identities=16%  Similarity=0.208  Sum_probs=46.6

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC------CChHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN------AVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d------~~~~~la~~~~I~~~Pti  162 (162)
                      ..++++||+|||+||++|+.+.|.|++++++++      .||++      .+++ ++++|+|+++||+
T Consensus        10 ~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~-l~~~~~V~~~PT~   70 (106)
T 3kp8_A           10 HLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQ-ECTEAGITSYPTW   70 (106)
T ss_dssp             HHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCH-HHHHTTCCSSSEE
T ss_pred             hcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHH-HHHHcCCeEeCEE
Confidence            446778999999999999999999999998873      45555      5667 9999999999985

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.50  E-value=6e-14  Score=109.60  Aligned_cols=61  Identities=20%  Similarity=0.208  Sum_probs=56.1

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC----CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH----PRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ..+++++++|||+||++|+.+.|.|+++++++.    +++.+.+||++.+++ ++++|+|.++||+
T Consensus       136 ~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~-~~~~~~V~~vPt~  200 (243)
T 2hls_A          136 LKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPD-IADKYGVMSVPSI  200 (243)
T ss_dssp             CCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             cCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHH-HHHHcCCeeeCeE
Confidence            457788999999999999999999999999982    679999999999998 9999999999985

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.49  E-value=6.4e-14  Score=102.84  Aligned_cols=62  Identities=18%  Similarity=0.314  Sum_probs=55.0

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCCh-----------------------HHHHHHcC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVP-----------------------HKLVARAG  155 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~-----------------------~~la~~~~  155 (162)
                      .+++++||+|||+||++|+.+.|.|++++++|++  ++.++.|+++...                       ..++++|+
T Consensus        46 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (165)
T 3s9f_A           46 LSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYS  125 (165)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             cCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcC
Confidence            4689999999999999999999999999999964  7999999998772                       23899999


Q ss_pred             CcccccC
Q 031285          156 VMVSLMI  162 (162)
Q Consensus       156 I~~~Pti  162 (162)
                      |.++|++
T Consensus       126 v~~~Pt~  132 (165)
T 3s9f_A          126 VESIPTL  132 (165)
T ss_dssp             CCSSSEE
T ss_pred             CCCCCEE
Confidence            9999974

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.49  E-value=2.9e-14  Score=120.36  Aligned_cols=70  Identities=23%  Similarity=0.440  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+.   +.+++++|+|||+||++|+.+.|.|+++++++++  ++.+++||++.+ + ++++|+|.++||+
T Consensus       358 ~~~~~~~~~~---~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~-~~~~~~v~~~Pt~  429 (481)
T 3f8u_A          358 VAENFDEIVN---NENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-D-VPSPYEVRGFPTI  429 (481)
T ss_dssp             CTTTHHHHHT---CTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-C-CCTTCCCCSSSEE
T ss_pred             cccCHHHHhh---cCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-h-hHhhCCCcccCEE
Confidence            4568888882   5699999999999999999999999999999955  699999999998 6 8999999999985

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.48  E-value=7e-14  Score=99.43  Aligned_cols=62  Identities=15%  Similarity=0.211  Sum_probs=54.4

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCCCh-----------------------HHHHHHcC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAVP-----------------------HKLVARAG  155 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~-----------------------~~la~~~~  155 (162)
                      ..++++||+||++||++|+.+.|.|++++++|+  .++.++.|+++...                       ..++++|+
T Consensus        26 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  105 (144)
T 1i5g_A           26 LAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD  105 (144)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcC
Confidence            458999999999999999999999999999996  47999999998642                       23889999


Q ss_pred             CcccccC
Q 031285          156 VMVSLMI  162 (162)
Q Consensus       156 I~~~Pti  162 (162)
                      |.++|++
T Consensus       106 v~~~P~~  112 (144)
T 1i5g_A          106 VKSIPTL  112 (144)
T ss_dssp             CCSSSEE
T ss_pred             CCCCCEE
Confidence            9999974

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.48  E-value=2.6e-14  Score=127.24  Aligned_cols=70  Identities=17%  Similarity=0.183  Sum_probs=58.6

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+    +.+++++|+|||+||++|+.+.|.|+++++++++.+.|++||++.+.+ +|++|+|.++||+
T Consensus       122 ~~~~f~~~i----~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~Pt~  191 (780)
T 3apo_A          122 ERREFDAAV----NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRM-LCRMKGVNSYPSL  191 (780)
T ss_dssp             CHHHHHHHH----TSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSS-CC--------CEE
T ss_pred             chHhHHhhh----cCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHH-HHHHcCCceeeeE
Confidence            678999999    789999999999999999999999999999997779999999999998 9999999999985

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.46  E-value=1e-13  Score=98.97  Aligned_cols=62  Identities=18%  Similarity=0.270  Sum_probs=54.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCCCh-----------------------HHHHHHcC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAVP-----------------------HKLVARAG  155 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~-----------------------~~la~~~~  155 (162)
                      ..++++||+||++||++|+.+.|.|++++++++  .++.++.|+++...                       ..++++|+
T Consensus        26 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  105 (146)
T 1o8x_A           26 LAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN  105 (146)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT
T ss_pred             hCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhC
Confidence            468999999999999999999999999999996  47999999998742                       23889999


Q ss_pred             CcccccC
Q 031285          156 VMVSLMI  162 (162)
Q Consensus       156 I~~~Pti  162 (162)
                      |.++|++
T Consensus       106 v~~~Pt~  112 (146)
T 1o8x_A          106 VESIPTL  112 (146)
T ss_dssp             CCSSSEE
T ss_pred             CCCCCEE
Confidence            9999974

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.46  E-value=1.7e-14  Score=105.68  Aligned_cols=75  Identities=11%  Similarity=0.097  Sum_probs=55.2

Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHH--HhCCCeEEEEEECCC-ChHHHHHHcCCcccccC
Q 031285           86 IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAA--DYHPRLRFYNVDVNA-VPHKLVARAGVMVSLMI  162 (162)
Q Consensus        86 i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~--~~~~~v~~~~vd~d~-~~~~la~~~~I~~~Pti  162 (162)
                      +....++++.+..++..+++|+|+|||+||++|+.+.|.+.+..+  ++ .+..|+.||+|. ..+ ++.+++|.++||+
T Consensus        27 i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~-~~~~fv~V~vD~e~~~-~~~~~~v~~~PT~  104 (151)
T 3ph9_A           27 ITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEM-AQNKFIMLNLMHETTD-KNLSPDGQYVPRI  104 (151)
T ss_dssp             SCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHH-HHHTCEEEEESSCCSC-GGGCTTCCCSSEE
T ss_pred             CcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHH-hhcCeEEEEecCCchh-hHhhcCCCCCCEE
Confidence            334446777776666889999999999999999999999986432  22 123466666653 334 7889999999985

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.45  E-value=1.4e-13  Score=97.53  Aligned_cols=62  Identities=19%  Similarity=0.351  Sum_probs=54.3

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCCCh-----------------------HHHHHHcC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAVP-----------------------HKLVARAG  155 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~-----------------------~~la~~~~  155 (162)
                      ..++++||+||++||++|+.+.|.|++++++++  .++.++.|+++...                       ..++++|+
T Consensus        26 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (144)
T 1o73_A           26 LVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG  105 (144)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT
T ss_pred             hCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcC
Confidence            468999999999999999999999999999996  47999999998742                       23889999


Q ss_pred             CcccccC
Q 031285          156 VMVSLMI  162 (162)
Q Consensus       156 I~~~Pti  162 (162)
                      |.++|++
T Consensus       106 v~~~Pt~  112 (144)
T 1o73_A          106 VESIPTL  112 (144)
T ss_dssp             CCSSSEE
T ss_pred             CCCCCEE
Confidence            9999974

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.45  E-value=6.5e-14  Score=114.09  Aligned_cols=73  Identities=22%  Similarity=0.411  Sum_probs=62.7

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCChHHHHHHcCCcccc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLVARAGVMVSL  160 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~la~~~~I~~~P  160 (162)
                      +..+ +.++|++.+.   ..+++++|+|||+||++|+.+.|.|+++++++++  ++.+++||++.+.   +++|+|.++|
T Consensus       251 v~~l-~~~~f~~~~~---~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~---~~~~~v~~~P  323 (361)
T 3uem_A          251 VKVL-VGKNFEDVAF---DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE---VEAVKVHSFP  323 (361)
T ss_dssp             SEEE-CTTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB---CSSCCCCSSS
T ss_pred             cEEe-ecCchhhhcc---cCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc---hhhcCCcccC
Confidence            4444 4467888872   6799999999999999999999999999999955  4999999999885   6789999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      |+
T Consensus       324 t~  325 (361)
T 3uem_A          324 TL  325 (361)
T ss_dssp             EE
T ss_pred             eE
Confidence            85

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.45  E-value=3.7e-15  Score=109.77  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCC--cccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGV--MVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I--~~~Pti  162 (162)
                      +.++...    ..++++||+|||+||++|+.+.|.|+++++.++.++.|+.||++.+.+.++.+|++  .++||+
T Consensus        37 ~~~~~~~----~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~  107 (164)
T 1sen_A           37 DGKKEAA----ASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRI  107 (164)
T ss_dssp             HHHHHHH----HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEE
T ss_pred             HHHHHHH----hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeE
Confidence            4455554    67999999999999999999999999988776445788888888765435788888  669984

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.45  E-value=1.4e-13  Score=96.10  Aligned_cols=60  Identities=20%  Similarity=0.312  Sum_probs=54.6

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC----------------------ChHHHHHHcCCcc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA----------------------VPHKLVARAGVMV  158 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----------------------~~~~la~~~~I~~  158 (162)
                      ..+++++|+||++||++|+.+.|.++++.++++ ++.++.|+++.                      ..+ ++++|+|.+
T Consensus        22 ~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~i~~   99 (136)
T 1lu4_A           22 LQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGV-IWARYNVPW   99 (136)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSH-HHHHTTCCS
T ss_pred             hCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchh-HHHhcCCCC
Confidence            458999999999999999999999999999995 99999999987                      556 899999999


Q ss_pred             cccC
Q 031285          159 SLMI  162 (162)
Q Consensus       159 ~Pti  162 (162)
                      +|++
T Consensus       100 ~P~~  103 (136)
T 1lu4_A          100 QPAF  103 (136)
T ss_dssp             SSEE
T ss_pred             CCEE
Confidence            9974

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.45  E-value=1.5e-13  Score=98.75  Aligned_cols=61  Identities=15%  Similarity=0.182  Sum_probs=54.1

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCC-------------------------hHHHHHHc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAV-------------------------PHKLVARA  154 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~-------------------------~~~la~~~  154 (162)
                      ..|+++||+||++||++|+.+.|.++++.++|++ ++.++.|+++..                         .+ ++++|
T Consensus        27 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~  105 (152)
T 2lrn_A           27 FKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKD-VLESY  105 (152)
T ss_dssp             GTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHH-HHHHT
T ss_pred             cCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHH-HHHHh
Confidence            3589999999999999999999999999999955 499999999973                         34 88999


Q ss_pred             CCcccccC
Q 031285          155 GVMVSLMI  162 (162)
Q Consensus       155 ~I~~~Pti  162 (162)
                      +|.++|++
T Consensus       106 ~v~~~P~~  113 (152)
T 2lrn_A          106 CIVGFPHI  113 (152)
T ss_dssp             TCCSSCEE
T ss_pred             CCCcCCeE
Confidence            99999973

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.45  E-value=2e-13  Score=107.46  Aligned_cols=70  Identities=13%  Similarity=0.099  Sum_probs=61.7

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEe--cCCChhhhhhhHhHHHHHHHh---CCCeEEEEEECCC-----ChHHHHH
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWM--ASWCRKCIYLKPKLEKLAADY---HPRLRFYNVDVNA-----VPHKLVA  152 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~--a~WC~~C~~~~p~l~~l~~~~---~~~v~~~~vd~d~-----~~~~la~  152 (162)
                      +..+ +..+|++++    ..+++|||+||  |||||    +.|.|+++++++   .+++.|++||++.     +++ +|+
T Consensus        18 v~~L-t~~nF~~vi----~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~-la~   87 (248)
T 2c0g_A           18 CVDL-DELSFEKTV----ERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKA-LGD   87 (248)
T ss_dssp             CEEC-CTTTHHHHH----TTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHH-HHH
T ss_pred             cEEC-CHHHHHHHH----hcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHH-HHH
Confidence            3444 557899987    78899999999  99999    999999999998   3579999999998     778 999


Q ss_pred             HcCCc--ccccC
Q 031285          153 RAGVM--VSLMI  162 (162)
Q Consensus       153 ~~~I~--~~Pti  162 (162)
                      +|+|+  ++|||
T Consensus        88 ~~~V~~~~~PTl   99 (248)
T 2c0g_A           88 RYKVDDKNFPSI   99 (248)
T ss_dssp             HTTCCTTSCCEE
T ss_pred             HhCCCcCCCCeE
Confidence            99999  99985

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.44  E-value=5.8e-14  Score=107.06  Aligned_cols=72  Identities=17%  Similarity=0.252  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecC-CChhhhhhhHhHHHHHHHhCCCeEEEEEECCC--ChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMAS-WCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA--VPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~-WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~la~~~~I~~~Pti  162 (162)
                      +.+.+++.+.. ...+..++|+||++ ||++|+.+.|.++++++.. +++.|++||++.  +++ ++++|+|+++||+
T Consensus         8 ~~~~~~~~~~~-~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~-~~v~~~~vd~~~~~~~~-~~~~~~v~~~Pt~   82 (226)
T 1a8l_A            8 DKKVIKEEFFS-KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELT-DKLSYEIVDFDTPEGKE-LAKRYRIDRAPAT   82 (226)
T ss_dssp             HHHHHHHHTGG-GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC-TTEEEEEEETTSHHHHH-HHHHTTCCSSSEE
T ss_pred             HHHHHHHHHHH-hcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhC-CceEEEEEeCCCcccHH-HHHHcCCCcCceE
Confidence            44566666622 14567788999999 9999999999999999764 789999999998  878 9999999999985

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.44  E-value=1.3e-13  Score=98.00  Aligned_cols=62  Identities=8%  Similarity=0.059  Sum_probs=53.0

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHH---HHHHh-CCCeEEEEEECCCChHH-----------------------HHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEK---LAADY-HPRLRFYNVDVNAVPHK-----------------------LVAR  153 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~---l~~~~-~~~v~~~~vd~d~~~~~-----------------------la~~  153 (162)
                      ..++++||+|||+||++|+.++|.+++   +.+++ +.++.++.|+.+...+.                       +++.
T Consensus        29 ~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  108 (142)
T 3eur_A           29 FPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNL  108 (142)
T ss_dssp             CCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTC
T ss_pred             cCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhh
Confidence            358999999999999999999999999   99999 45799999999887552                       3567


Q ss_pred             cCCcccccC
Q 031285          154 AGVMVSLMI  162 (162)
Q Consensus       154 ~~I~~~Pti  162 (162)
                      |+|.++|++
T Consensus       109 ~~v~~~P~~  117 (142)
T 3eur_A          109 YDLRAIPTL  117 (142)
T ss_dssp             SCCTTCSEE
T ss_pred             cCCCcCCeE
Confidence            888888863

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.44  E-value=1.8e-13  Score=96.36  Aligned_cols=60  Identities=13%  Similarity=0.299  Sum_probs=54.1

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC-------------------------ChHHHHHHcC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA-------------------------VPHKLVARAG  155 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~-------------------------~~~~la~~~~  155 (162)
                      .++++||+||++||++|+.+.|.++++.++++ .++.|+.|+++.                         +.. ++++|+
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~  111 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGE-LMKEYH  111 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSH-HHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchh-HHHhcC
Confidence            68999999999999999999999999999995 579999999964                         446 899999


Q ss_pred             CcccccC
Q 031285          156 VMVSLMI  162 (162)
Q Consensus       156 I~~~Pti  162 (162)
                      |.++|++
T Consensus       112 v~~~P~~  118 (145)
T 3erw_A          112 IITIPTS  118 (145)
T ss_dssp             CCEESEE
T ss_pred             cCccCeE
Confidence            9999973

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.43  E-value=1.8e-13  Score=96.94  Aligned_cols=61  Identities=11%  Similarity=0.295  Sum_probs=54.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHh-CCC-eEEEEEECCCCh-------------------------HHHHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPR-LRFYNVDVNAVP-------------------------HKLVAR  153 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~-v~~~~vd~d~~~-------------------------~~la~~  153 (162)
                      ..++++||+||++||++|+.+.|.++++.++| +++ +.++.|+++...                         . ++++
T Consensus        31 ~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~  109 (148)
T 3fkf_A           31 FRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSE-TAKQ  109 (148)
T ss_dssp             TTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCH-HHHH
T ss_pred             cCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchH-HHHh
Confidence            36899999999999999999999999999999 654 999999998743                         5 8999


Q ss_pred             cCCcccccC
Q 031285          154 AGVMVSLMI  162 (162)
Q Consensus       154 ~~I~~~Pti  162 (162)
                      |+|.++|++
T Consensus       110 ~~v~~~P~~  118 (148)
T 3fkf_A          110 YAILTLPTN  118 (148)
T ss_dssp             TTCCSSSEE
T ss_pred             cCCCCcCEE
Confidence            999999973

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.43  E-value=2.2e-13  Score=96.27  Aligned_cols=61  Identities=13%  Similarity=0.186  Sum_probs=54.1

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC---------------------------CChHHHHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN---------------------------AVPHKLVAR  153 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d---------------------------~~~~~la~~  153 (162)
                      .+++++||+||++||++|+.+.|.++++.+++++++.|+.|+++                           ...+ ++++
T Consensus        27 ~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~  105 (148)
T 2b5x_A           27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHA-LTDA  105 (148)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCH-HHHH
T ss_pred             cCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchh-HHHH
Confidence            56899999999999999999999999999999666999999964                           3445 9999


Q ss_pred             cCCcccccC
Q 031285          154 AGVMVSLMI  162 (162)
Q Consensus       154 ~~I~~~Pti  162 (162)
                      |+|.++|++
T Consensus       106 ~~v~~~P~~  114 (148)
T 2b5x_A          106 FENEYVPAY  114 (148)
T ss_dssp             TCCCCSSEE
T ss_pred             hCCCCCCEE
Confidence            999999974

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.43  E-value=2.4e-13  Score=121.07  Aligned_cols=75  Identities=20%  Similarity=0.323  Sum_probs=66.2

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+ +.++|.+.+.   ..+++++|+|||+||++|+.+.|.++++++++++++.|++||++.+++ ++++|+|.++|++
T Consensus       659 v~~l-~~~~~~~~~~---~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~  733 (780)
T 3apo_A          659 SIDL-TPQTFNEKVL---QGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQ-TCQKAGIKAYPSV  733 (780)
T ss_dssp             SEEE-CHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             cccC-CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHH-HHHhcCCCcCCEE
Confidence            3444 5578876552   678999999999999999999999999999997789999999999998 9999999999985

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.40  E-value=3.2e-13  Score=96.86  Aligned_cols=61  Identities=16%  Similarity=0.285  Sum_probs=51.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCC-----------------------hHHHHHHcC-
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAV-----------------------PHKLVARAG-  155 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~-----------------------~~~la~~~~-  155 (162)
                      .+|+++||+||++||++|+.+.|.|+++.++| +.++.++.|++|..                       ...++++|+ 
T Consensus        22 ~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (151)
T 3raz_A           22 LKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGN  101 (151)
T ss_dssp             CCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTC
T ss_pred             hCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCC
Confidence            46899999999999999999999999999999 45699999999732                       222778888 


Q ss_pred             -Cccccc
Q 031285          156 -VMVSLM  161 (162)
Q Consensus       156 -I~~~Pt  161 (162)
                       +.++|+
T Consensus       102 ~v~~~P~  108 (151)
T 3raz_A          102 TVGVLPF  108 (151)
T ss_dssp             CSCCSSE
T ss_pred             ccCCCCE
Confidence             888886

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.40  E-value=4.9e-13  Score=93.04  Aligned_cols=60  Identities=22%  Similarity=0.315  Sum_probs=53.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC-----------------------ChHHHHHHcCCc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA-----------------------VPHKLVARAGVM  157 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------------------~~~~la~~~~I~  157 (162)
                      ..+++++|+||++||++|+.+.|.++++.++++ ++.++.|+++.                       ..+ ++++|+|.
T Consensus        23 ~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~i~  100 (136)
T 1zzo_A           23 LLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGS-VWANFGVT  100 (136)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCH-HHHHTTCC
T ss_pred             hCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcH-HHHHcCCC
Confidence            468999999999999999999999999999995 89999999854                       445 89999999


Q ss_pred             ccccC
Q 031285          158 VSLMI  162 (162)
Q Consensus       158 ~~Pti  162 (162)
                      ++|++
T Consensus       101 ~~P~~  105 (136)
T 1zzo_A          101 QQPAY  105 (136)
T ss_dssp             SSSEE
T ss_pred             CCceE
Confidence            99974

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.40  E-value=3.7e-13  Score=97.18  Aligned_cols=60  Identities=13%  Similarity=0.137  Sum_probs=53.0

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChH----------------------HHHHHcCCcc
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPH----------------------KLVARAGVMV  158 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~----------------------~la~~~~I~~  158 (162)
                      .|+++||+||++||++|+.+.|.|+++.++|++ ++.++.|+++...+                      .++++|+|.+
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  113 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN  113 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc
Confidence            589999999999999999999999999999954 59999999998764                      1778889998


Q ss_pred             ccc
Q 031285          159 SLM  161 (162)
Q Consensus       159 ~Pt  161 (162)
                      +|+
T Consensus       114 ~P~  116 (152)
T 2lrt_A          114 LPS  116 (152)
T ss_dssp             CSE
T ss_pred             Cce
Confidence            886

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.40  E-value=5.5e-13  Score=94.79  Aligned_cols=61  Identities=8%  Similarity=0.171  Sum_probs=52.1

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChH-------------------------HHHHHc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPH-------------------------KLVARA  154 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~-------------------------~la~~~  154 (162)
                      .+|+++||+|||+||++|+.++|.|+++.++|+ .++.++.|++|...+                         .+++.|
T Consensus        30 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  109 (143)
T 4fo5_A           30 QLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKY  109 (143)
T ss_dssp             SSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHT
T ss_pred             hCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHc
Confidence            468999999999999999999999999999995 469999999885431                         267788


Q ss_pred             CCccccc
Q 031285          155 GVMVSLM  161 (162)
Q Consensus       155 ~I~~~Pt  161 (162)
                      +|.++|+
T Consensus       110 ~v~~~P~  116 (143)
T 4fo5_A          110 DLRKGFK  116 (143)
T ss_dssp             TGGGCCC
T ss_pred             CCCCCCc
Confidence            8888886

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.39  E-value=5.4e-13  Score=95.37  Aligned_cols=61  Identities=13%  Similarity=0.277  Sum_probs=54.0

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCC----------------------hHHHHHHcCCc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAV----------------------PHKLVARAGVM  157 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~----------------------~~~la~~~~I~  157 (162)
                      ..++++||+||++||++|+.+.|.|+++.+++++ ++.++.|+++..                      .. ++++|+|.
T Consensus        24 ~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~v~  102 (151)
T 2f9s_A           24 LKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQ-VLDAYDVS  102 (151)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSH-HHHHTTCC
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchH-HHHhcCCC
Confidence            3589999999999999999999999999999954 699999999764                      35 89999999


Q ss_pred             ccccC
Q 031285          158 VSLMI  162 (162)
Q Consensus       158 ~~Pti  162 (162)
                      ++|++
T Consensus       103 ~~P~~  107 (151)
T 2f9s_A          103 PLPTT  107 (151)
T ss_dssp             SSCEE
T ss_pred             CCCeE
Confidence            99973

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.39  E-value=4.6e-13  Score=102.49  Aligned_cols=72  Identities=13%  Similarity=0.129  Sum_probs=58.0

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEe-----cCCChhhhhhhHhHHHHHHHh--CCCeEEEEEECCCChHHHHHHcCCcccc
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWM-----ASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMVSL  160 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~-----a~WC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~la~~~~I~~~P  160 (162)
                      ..+.+.+.+..  +..++++|.||     ++||++|+.+.|.++++++++  .+++.+++||++.+++ ++++|+|+++|
T Consensus         7 ~~~~l~~~~~~--~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~-l~~~~~v~~~P   83 (229)
T 2ywm_A            7 VRMQLKELAQK--EFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKE-ETEKYGVDRVP   83 (229)
T ss_dssp             HHHHHHHHHHH--HCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHH-HHHHTTCCBSS
T ss_pred             HHHHHHHHHHH--hccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHH-HHHHcCCCcCc
Confidence            34566666622  23444444444     999999999999999999888  6789999999999999 99999999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      |+
T Consensus        84 tl   85 (229)
T 2ywm_A           84 TI   85 (229)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.39  E-value=6.3e-13  Score=95.58  Aligned_cols=60  Identities=12%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             cCCCeEEEEEecCCChhhhhh-hHhHHHHHHHhC-CCeEEEEEECC----------------------------CCh---
Q 031285          101 QLDESVIIVWMASWCRKCIYL-KPKLEKLAADYH-PRLRFYNVDVN----------------------------AVP---  147 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~-~p~l~~l~~~~~-~~v~~~~vd~d----------------------------~~~---  147 (162)
                      ..|+++||+||++||++|+.+ +|.|+++.++|+ .++.|+.|+++                            ...   
T Consensus        26 ~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  105 (158)
T 3eyt_A           26 LRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGA  105 (158)
T ss_dssp             GTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSS
T ss_pred             hCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchh
Confidence            458999999999999999996 999999999995 46999999864                            222   


Q ss_pred             --HHHHHHcCCccccc
Q 031285          148 --HKLVARAGVMVSLM  161 (162)
Q Consensus       148 --~~la~~~~I~~~Pt  161 (162)
                        . +++.|+|.++|+
T Consensus       106 ~~~-~~~~~~v~~~P~  120 (158)
T 3eyt_A          106 MPR-TMAAYQMRGTPS  120 (158)
T ss_dssp             SCH-HHHHTTCCSSSE
T ss_pred             hHH-HHHHcCCCCCCE
Confidence              3 789999999996

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.39  E-value=8.2e-13  Score=95.48  Aligned_cols=60  Identities=22%  Similarity=0.365  Sum_probs=54.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC-------------------ChHHHHHHcCCcccc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA-------------------VPHKLVARAGVMVSL  160 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~-------------------~~~~la~~~~I~~~P  160 (162)
                      ..++++||+||++||++|+.+.|.|+++.++++ .++.++.|+.+.                   ..+ ++++|+|.++|
T Consensus        39 ~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~v~~~P  117 (158)
T 3hdc_A           39 YRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQ-VQQRYGANRLP  117 (158)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSH-HHHHTTCCSSS
T ss_pred             hCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHH-HHHHhCCCCcc
Confidence            458999999999999999999999999999995 579999999987                   556 99999999999


Q ss_pred             c
Q 031285          161 M  161 (162)
Q Consensus       161 t  161 (162)
                      +
T Consensus       118 ~  118 (158)
T 3hdc_A          118 D  118 (158)
T ss_dssp             E
T ss_pred             e
Confidence            7

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.38  E-value=3.1e-13  Score=95.56  Aligned_cols=62  Identities=8%  Similarity=0.128  Sum_probs=51.6

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHH---HHHHhC-CCeEEEEEECCCChHHH-----------------------HHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEK---LAADYH-PRLRFYNVDVNAVPHKL-----------------------VAR  153 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~---l~~~~~-~~v~~~~vd~d~~~~~l-----------------------a~~  153 (162)
                      ..|+++||+||++||++|+.++|.+.+   +.++++ .++.++.|+++...+.+                       ++.
T Consensus        25 ~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  104 (142)
T 3ewl_A           25 LKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL  104 (142)
T ss_dssp             CCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred             cCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence            468999999999999999999999998   888884 45999999999776521                       237


Q ss_pred             cCCcccccC
Q 031285          154 AGVMVSLMI  162 (162)
Q Consensus       154 ~~I~~~Pti  162 (162)
                      |+|.++|++
T Consensus       105 ~~v~~~P~~  113 (142)
T 3ewl_A          105 YDIRATPTI  113 (142)
T ss_dssp             SCCCSSSEE
T ss_pred             cCCCCCCeE
Confidence            889988863

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.38  E-value=1.1e-12  Score=93.68  Aligned_cols=61  Identities=16%  Similarity=0.259  Sum_probs=54.6

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCCh-----------------------HHHHHHcCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVP-----------------------HKLVARAGV  156 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~-----------------------~~la~~~~I  156 (162)
                      ..++++||+||++||++|+.+.|.++++.+++++ ++.++.|+++...                       + ++++|+|
T Consensus        28 ~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~v  106 (152)
T 2lja_A           28 LKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRT-FMDAYLI  106 (152)
T ss_dssp             TTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTH-HHHHTTC
T ss_pred             cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchh-HHHHcCc
Confidence            3589999999999999999999999999999954 5999999998875                       4 8899999


Q ss_pred             cccccC
Q 031285          157 MVSLMI  162 (162)
Q Consensus       157 ~~~Pti  162 (162)
                      .++|++
T Consensus       107 ~~~P~~  112 (152)
T 2lja_A          107 NGIPRF  112 (152)
T ss_dssp             CSSCCE
T ss_pred             CCCCEE
Confidence            999974

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.38  E-value=9.2e-13  Score=95.62  Aligned_cols=43  Identities=28%  Similarity=0.706  Sum_probs=40.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d  144 (162)
                      .+++++||+||++||++|+.+.|.|+++.++|+ ++.|+.|+++
T Consensus        35 ~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d   77 (165)
T 3ha9_A           35 VGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFW   77 (165)
T ss_dssp             CCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECC
T ss_pred             hCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEec
Confidence            468999999999999999999999999999996 9999999998

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.37  E-value=1.2e-12  Score=94.50  Aligned_cols=53  Identities=19%  Similarity=0.402  Sum_probs=46.9

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARA  154 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~  154 (162)
                      ..++++||+||++||++|+.+.|.|+++.++|++ ++.++.|+++...+ ..++|
T Consensus        32 ~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~-~~~~~   85 (165)
T 3or5_A           32 LKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLP-NVKNY   85 (165)
T ss_dssp             GTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHH-HHHHH
T ss_pred             cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHH-HHHHH
Confidence            4689999999999999999999999999999965 49999999998876 55655

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.37  E-value=4.5e-13  Score=92.80  Aligned_cols=55  Identities=13%  Similarity=0.203  Sum_probs=50.4

Q ss_pred             CeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          104 ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       104 ~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .++|++||++||++|+.+.|.|+++++++  ++.+.+||++++++ ++++|+++ +|+|
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~--~i~~~~vDId~d~~-l~~~ygv~-VP~l   83 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKS--WFELEVINIDGNEH-LTRLYNDR-VPVL   83 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHS--CCCCEEEETTTCHH-HHHHSTTS-CSEE
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhc--CCeEEEEECCCCHH-HHHHhCCC-CceE
Confidence            35799999999999999999999999998  38999999999998 99999997 9985

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.37  E-value=2.6e-13  Score=90.56  Aligned_cols=49  Identities=16%  Similarity=0.272  Sum_probs=43.9

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      |++||++||++|+.+.|.|++++.++     +.+||++++++ ++++||++ +|++
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~~~-l~~~~g~~-vPtl   51 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDDAA-LESAYGLR-VPVL   51 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTCHH-HHHHHTTT-CSEE
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCCHH-HHHHhCCC-cCeE
Confidence            78899999999999999998876553     68899999999 99999998 9985

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.37  E-value=6.1e-13  Score=94.11  Aligned_cols=62  Identities=13%  Similarity=0.258  Sum_probs=53.7

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHH------------------------HHHHcC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHK------------------------LVARAG  155 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~------------------------la~~~~  155 (162)
                      ..++++||+||++||++|+.+.|.++++.++|++ ++.|+.|+++...+.                        +++.|+
T Consensus        29 ~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  108 (148)
T 3hcz_A           29 VQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD  108 (148)
T ss_dssp             CCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC
T ss_pred             cCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcC
Confidence            4689999999999999999999999999999954 499999999866441                        678889


Q ss_pred             CcccccC
Q 031285          156 VMVSLMI  162 (162)
Q Consensus       156 I~~~Pti  162 (162)
                      |.++|++
T Consensus       109 i~~~P~~  115 (148)
T 3hcz_A          109 IYATPVL  115 (148)
T ss_dssp             CCSSCEE
T ss_pred             cCCCCEE
Confidence            9998873

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.36  E-value=1e-12  Score=91.16  Aligned_cols=61  Identities=20%  Similarity=0.308  Sum_probs=53.0

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC----------------------------CCChHHHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV----------------------------NAVPHKLVA  152 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~----------------------------d~~~~~la~  152 (162)
                      .+|+++||+||++||++|+.+.|.++++.+++++++.++.|+.                            +.+.+ +++
T Consensus        20 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~   98 (138)
T 4evm_A           20 YKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGK-LLE   98 (138)
T ss_dssp             GTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCH-HHH
T ss_pred             hCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchH-HHH
Confidence            4689999999999999999999999999999877899999953                            33445 899


Q ss_pred             HcCCcccccC
Q 031285          153 RAGVMVSLMI  162 (162)
Q Consensus       153 ~~~I~~~Pti  162 (162)
                      +|+|.++|++
T Consensus        99 ~~~v~~~P~~  108 (138)
T 4evm_A           99 TYGVRSYPTQ  108 (138)
T ss_dssp             HTTCCSSSEE
T ss_pred             HcCcccCCeE
Confidence            9999999974

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.36  E-value=1.5e-12  Score=93.25  Aligned_cols=62  Identities=11%  Similarity=0.192  Sum_probs=54.3

Q ss_pred             cCCCeEEEEEecCCChh--hhhhhHhHHHHHHHh-CC-CeEEEEEECCCCh------------------------HHHHH
Q 031285          101 QLDESVIIVWMASWCRK--CIYLKPKLEKLAADY-HP-RLRFYNVDVNAVP------------------------HKLVA  152 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~--C~~~~p~l~~l~~~~-~~-~v~~~~vd~d~~~------------------------~~la~  152 (162)
                      ..|+++||+||++||++  |+.+.|.|+++.++| ++ ++.++.|++|...                        ..+++
T Consensus        31 ~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  110 (150)
T 3fw2_A           31 FKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAK  110 (150)
T ss_dssp             TTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred             hCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHH
Confidence            36899999999999999  999999999999999 65 4999999998764                        13888


Q ss_pred             HcCCcccccC
Q 031285          153 RAGVMVSLMI  162 (162)
Q Consensus       153 ~~~I~~~Pti  162 (162)
                      +|+|.++|++
T Consensus       111 ~~~v~~~P~~  120 (150)
T 3fw2_A          111 QYSIYKIPAN  120 (150)
T ss_dssp             HTTCCSSSEE
T ss_pred             HcCCCccCeE
Confidence            9999999963

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.36  E-value=1.3e-12  Score=93.22  Aligned_cols=61  Identities=21%  Similarity=0.348  Sum_probs=53.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChH---------------------HHHHHcCCcc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPH---------------------KLVARAGVMV  158 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~---------------------~la~~~~I~~  158 (162)
                      ..++++||+||++||++|+.+.|.|+++.++|++ ++.++.|+++...+                     .+++.|+|.+
T Consensus        26 ~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  105 (152)
T 3gl3_A           26 KTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKG  105 (152)
T ss_dssp             GTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCS
T ss_pred             hCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCC
Confidence            4689999999999999999999999999999954 49999999987652                     2778899999


Q ss_pred             ccc
Q 031285          159 SLM  161 (162)
Q Consensus       159 ~Pt  161 (162)
                      +|+
T Consensus       106 ~P~  108 (152)
T 3gl3_A          106 MPT  108 (152)
T ss_dssp             SSE
T ss_pred             CCe
Confidence            997

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.36  E-value=3.3e-13  Score=114.69  Aligned_cols=74  Identities=18%  Similarity=0.374  Sum_probs=62.1

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCcc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMV  158 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~la~~~~I~~  158 (162)
                      .+..+ +.++|++.+.   +.++++||+|||+||++|+.+.|.|++++++++   .++.++++|++.+.. . + |+|++
T Consensus       359 ~v~~l-~~~~f~~~v~---~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~-~-~-~~v~~  431 (504)
T 2b5e_A          359 SVFQL-VGKNHDEIVN---DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDV-R-G-VVIEG  431 (504)
T ss_dssp             SEEEE-CTTTHHHHHH---CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCC-S-S-CCCSS
T ss_pred             cceec-ccccHHHhhc---cCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCcccc-c-c-CCcee
Confidence            34445 4467888873   679999999999999999999999999999984   379999999998865 3 4 99999


Q ss_pred             cccC
Q 031285          159 SLMI  162 (162)
Q Consensus       159 ~Pti  162 (162)
                      +||+
T Consensus       432 ~Pt~  435 (504)
T 2b5e_A          432 YPTI  435 (504)
T ss_dssp             SSEE
T ss_pred             cCeE
Confidence            9985

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.34  E-value=1.2e-12  Score=94.45  Aligned_cols=61  Identities=21%  Similarity=0.315  Sum_probs=50.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEEC----------------------------CCChHHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDV----------------------------NAVPHKLV  151 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~----------------------------d~~~~~la  151 (162)
                      ..++++||+||++||++|+.+.|.|++++++| ..++.++.|++                            +.+.+ ++
T Consensus        36 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~  114 (164)
T 2h30_A           36 KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGT-IA  114 (164)
T ss_dssp             CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCH-HH
T ss_pred             hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchH-HH
Confidence            57899999999999999999999999999987 34577777764                            33445 89


Q ss_pred             HHcCCcccccC
Q 031285          152 ARAGVMVSLMI  162 (162)
Q Consensus       152 ~~~~I~~~Pti  162 (162)
                      ++|+|.++|++
T Consensus       115 ~~~~v~~~P~~  125 (164)
T 2h30_A          115 QNLNISVYPSW  125 (164)
T ss_dssp             HHTTCCSSSEE
T ss_pred             HHcCCCccceE
Confidence            99999999974

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.34  E-value=1.3e-12  Score=94.03  Aligned_cols=42  Identities=12%  Similarity=0.282  Sum_probs=38.6

Q ss_pred             CCCeEEEEEecCCChhhhh-hhHhHHHHHHHhCC-CeEEEEEEC
Q 031285          102 LDESVIIVWMASWCRKCIY-LKPKLEKLAADYHP-RLRFYNVDV  143 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~-~~p~l~~l~~~~~~-~v~~~~vd~  143 (162)
                      .|+++||+||++||++|+. +.|.|+++.++|++ ++.++.|++
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~   72 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHS   72 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEEC
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEec
Confidence            5899999999999999999 59999999999964 499999987

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.34  E-value=2.5e-12  Score=91.88  Aligned_cols=60  Identities=20%  Similarity=0.305  Sum_probs=53.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCC-----------------------hHHHHHHcCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAV-----------------------PHKLVARAGV  156 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~-----------------------~~~la~~~~I  156 (162)
                      ..++++||+||++||++|+.+.|.++++.+++++ ++.++.|+++..                       .. +++.|+|
T Consensus        26 ~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~v  104 (154)
T 3kcm_A           26 LKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKR-VGKLYGT  104 (154)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCH-HHHHHTC
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchH-HHHHhCC
Confidence            3689999999999999999999999999999965 699999999876                       23 7889999


Q ss_pred             ccccc
Q 031285          157 MVSLM  161 (162)
Q Consensus       157 ~~~Pt  161 (162)
                      .++|+
T Consensus       105 ~~~P~  109 (154)
T 3kcm_A          105 TGVPE  109 (154)
T ss_dssp             CSBCE
T ss_pred             CCCCe
Confidence            99995

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.33  E-value=2.2e-12  Score=101.03  Aligned_cols=70  Identities=14%  Similarity=0.206  Sum_probs=60.3

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEec--CCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCC-----ChHHHHHH
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMA--SWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNA-----VPHKLVAR  153 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a--~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~-----~~~~la~~  153 (162)
                      +..+ +..+|++.+    ..+++|||+|||  |||+    +.|.|+++++++.  +++.|++||++.     +++ ++++
T Consensus         7 v~~L-t~~nF~~~i----~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~-l~~~   76 (240)
T 2qc7_A            7 ALPL-DTVTFYKVI----PKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNME-LSEK   76 (240)
T ss_dssp             CEEC-CTTHHHHHG----GGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHH-HHHH
T ss_pred             ceEC-CHHHHHHHH----cCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHH-HHHH
Confidence            3344 457899988    678999999999  9999    9999999999994  469999999664     777 9999


Q ss_pred             cCCc--ccccC
Q 031285          154 AGVM--VSLMI  162 (162)
Q Consensus       154 ~~I~--~~Pti  162 (162)
                      |+|+  ++||+
T Consensus        77 ~~V~~~~~PTl   87 (240)
T 2qc7_A           77 YKLDKESYPVF   87 (240)
T ss_dssp             TTCCGGGCSEE
T ss_pred             cCCCCCCCCEE
Confidence            9999  99985

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.33  E-value=2.6e-12  Score=95.32  Aligned_cols=60  Identities=15%  Similarity=0.221  Sum_probs=52.6

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC-----------------------------CChHHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-----------------------------AVPHKLV  151 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----------------------------~~~~~la  151 (162)
                      ..++++||+||++||++|+.++|.|+++.++|++++.++.|+++                             ...+ ++
T Consensus        31 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~-~~  109 (188)
T 2cvb_A           31 FHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQE-VA  109 (188)
T ss_dssp             CCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSH-HH
T ss_pred             hCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcch-HH
Confidence            45899999999999999999999999999999555999999984                             3445 88


Q ss_pred             HHcCCccccc
Q 031285          152 ARAGVMVSLM  161 (162)
Q Consensus       152 ~~~~I~~~Pt  161 (162)
                      +.|+|.++|+
T Consensus       110 ~~~~v~~~P~  119 (188)
T 2cvb_A          110 KAYRALRTPE  119 (188)
T ss_dssp             HHTTCCEESE
T ss_pred             HHcCCCCCCe
Confidence            9999999986

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.32  E-value=9.8e-13  Score=95.74  Aligned_cols=57  Identities=21%  Similarity=0.330  Sum_probs=49.3

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC-----------------------CCChHHHHHHcCCc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV-----------------------NAVPHKLVARAGVM  157 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-----------------------d~~~~~la~~~~I~  157 (162)
                      .+++++||+||++||++|+.+.|.++++.++   ++.++.|++                       +.+.. ++++|+|.
T Consensus        49 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~v~  124 (168)
T 2b1k_A           49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGM-LGLDLGVY  124 (168)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCH-HHHHHTCC
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchH-HHHHcCcc
Confidence            4799999999999999999999999999876   688888884                       44455 88999999


Q ss_pred             cccc
Q 031285          158 VSLM  161 (162)
Q Consensus       158 ~~Pt  161 (162)
                      ++|+
T Consensus       125 ~~P~  128 (168)
T 2b1k_A          125 GAPE  128 (168)
T ss_dssp             SSSE
T ss_pred             ccCE
Confidence            9994

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.00  E-value=1.3e-13  Score=97.30  Aligned_cols=61  Identities=16%  Similarity=0.328  Sum_probs=52.1

Q ss_pred             CCC-eEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCCh------------------------HHHHHH
Q 031285          102 LDE-SVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVP------------------------HKLVAR  153 (162)
Q Consensus       102 ~~~-~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~------------------------~~la~~  153 (162)
                      .|+ ++||+||++||++|+.+.|.|++++++++   +++.++.|+++...                        ..++++
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            466 99999999999999999999999999982   47889999887653                        138899


Q ss_pred             cCCcccccC
Q 031285          154 AGVMVSLMI  162 (162)
Q Consensus       154 ~~I~~~Pti  162 (162)
                      |+|.++|++
T Consensus       104 ~~v~~~P~~  112 (143)
T 2lus_A          104 YGITGIPAL  112 (143)
Confidence            999999974

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.32  E-value=3.6e-13  Score=87.51  Aligned_cols=56  Identities=11%  Similarity=0.169  Sum_probs=45.9

Q ss_pred             EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC-CChHHHHHHcCCcccccC
Q 031285          106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-AVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~la~~~~I~~~Pti  162 (162)
                      .++.||++||++|+.+.|.++++.++++.++.++.||.+ ...+ ++++||++++|++
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~gv~~vPt~   59 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIA-EAEKAGVKSVPAL   59 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHH-HHHHHTCCEEEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHH-HHHHcCCCcCCEE
Confidence            367899999999999999999998887445666666665 4556 8999999999985

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.29  E-value=3.9e-13  Score=94.38  Aligned_cols=58  Identities=12%  Similarity=0.198  Sum_probs=44.4

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-----CeEEEEEECCCC--hHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-----RLRFYNVDVNAV--PHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-----~v~~~~vd~d~~--~~~la~~~~I~~~Pti  162 (162)
                      .+.+.+||+|||+||++|+.+.+.+.   ..++.     .+.+++||++.+  .+ ++.+|+|.++||+
T Consensus        16 ~~~~~~LV~F~A~wC~~Ck~~~~~i~---~~~~~~a~~~~~~l~~vdv~~~~~~~-la~~~~V~g~PT~   80 (116)
T 3dml_A           16 DKAELRLLMFEQPGCLYCARWDAEIA---PQYPLTDEGRAAPVQRLQMRDPLPPG-LELARPVTFTPTF   80 (116)
T ss_dssp             ---CEEEEEEECTTCHHHHHHHHHTT---TTGGGSHHHHHSCEEEEETTSCCCTT-CBCSSCCCSSSEE
T ss_pred             ccCCCEEEEEECCCCHHHHHHHHHHH---hhHHHhhhcccceEEEEECCCCCchh-HHHHCCCCCCCEE
Confidence            45678999999999999999986443   33322     278999999886  35 8999999999985

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.29  E-value=4.1e-12  Score=93.86  Aligned_cols=53  Identities=13%  Similarity=0.280  Sum_probs=44.9

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCC-e------EEEEEECCC-ChHHHHHHc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPR-L------RFYNVDVNA-VPHKLVARA  154 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~-v------~~~~vd~d~-~~~~la~~~  154 (162)
                      .+++++||+||++||++|+.+.|.|+++.++|+++ +      .|+.|+++. ..+ ..++|
T Consensus        57 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~-~~~~~  117 (183)
T 3lwa_A           57 FENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRD-IAQDF  117 (183)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHH-HHHHH
T ss_pred             hCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHH-HHHHH
Confidence            35899999999999999999999999999999543 7      999999998 665 55555

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.28  E-value=8.2e-13  Score=90.89  Aligned_cols=55  Identities=16%  Similarity=0.289  Sum_probs=43.4

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC-----hHHHHHHcCCcccccC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV-----PHKLVARAGVMVSLMI  162 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-----~~~la~~~~I~~~Pti  162 (162)
                      +++++++ ||++||++|+.+.|.|+++..+    +.++.||.+..     .+ ++++|++.++|++
T Consensus        18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~~----~~~v~v~~~~~~~~~~~~-l~~~~~v~~~Pt~   77 (116)
T 2e7p_A           18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGAS----YKVVELDELSDGSQLQSA-LAHWTGRGTVPNV   77 (116)
T ss_dssp             TSSSEEE-EECTTCHHHHHHHHHHHHHTCC----CEEEEGGGSTTHHHHHHH-HHHHHSCCSSCEE
T ss_pred             cCCCEEE-EECCCChhHHHHHHHHHHcCCC----eEEEEccCCCChHHHHHH-HHHHhCCCCcCEE
Confidence            3456666 9999999999999999887543    56777776665     34 8999999999985

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.27  E-value=6.6e-12  Score=89.60  Aligned_cols=60  Identities=22%  Similarity=0.274  Sum_probs=51.8

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEEC-----------------------CCChHHHHHHcCCc
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDV-----------------------NAVPHKLVARAGVM  157 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~-----------------------d~~~~~la~~~~I~  157 (162)
                      .++++||+||++||++|+.+.|.++++.+++++ ++.++.|+.                       +.... +++.|+|.
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~i~  105 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKA-VGQAFGTQ  105 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCH-HHHHHTCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHH-HHHHcCCC
Confidence            589999999999999999999999999999954 589988774                       34455 89999999


Q ss_pred             ccccC
Q 031285          158 VSLMI  162 (162)
Q Consensus       158 ~~Pti  162 (162)
                      ++|++
T Consensus       106 ~~P~~  110 (153)
T 2l5o_A          106 VYPTS  110 (153)
T ss_dssp             SSSEE
T ss_pred             ccCeE
Confidence            99974

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.26  E-value=3.6e-12  Score=91.22  Aligned_cols=55  Identities=27%  Similarity=0.495  Sum_probs=49.8

Q ss_pred             CeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC---------------------------CCChHHHHHHcCC
Q 031285          104 ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV---------------------------NAVPHKLVARAGV  156 (162)
Q Consensus       104 ~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~---------------------------d~~~~~la~~~~I  156 (162)
                      +++||+||++||++|+.+.|.|+++.+++  ++.++.|++                           +.... ++++|+|
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~v  107 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHE-VAARFKV  107 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHH-HHTTSSB
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHH-HHHHhCC
Confidence            89999999999999999999999999999  899999999                           23444 8899999


Q ss_pred             ccccc
Q 031285          157 MVSLM  161 (162)
Q Consensus       157 ~~~Pt  161 (162)
                      .++|+
T Consensus       108 ~~~P~  112 (154)
T 3ia1_A          108 LGQPW  112 (154)
T ss_dssp             CSSCE
T ss_pred             CcccE
Confidence            99997

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.26  E-value=1.3e-11  Score=105.79  Aligned_cols=60  Identities=15%  Similarity=0.213  Sum_probs=56.0

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ..++..++.||++||++|+.+.|.+++++.++ +++.+.++|++.+++ ++++|+|+++|++
T Consensus       115 ~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~-~~v~~~~vd~~~~~~-~~~~~~i~svPt~  174 (521)
T 1hyu_A          115 IDGDFEFETYYSLSCHNCPDVVQALNLMAVLN-PRIKHTAIDGGTFQN-EITERNVMGVPAV  174 (521)
T ss_dssp             CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-TTEEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             cCCCcceEEEECCCCcCcHHHHHHHHHHHhHc-CceEEEEEechhhHH-HHHHhCCCccCEE
Confidence            45778899999999999999999999999998 599999999999999 9999999999985

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.25  E-value=9.9e-12  Score=95.09  Aligned_cols=60  Identities=18%  Similarity=0.376  Sum_probs=51.9

Q ss_pred             CCC-eEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC-----------------------------CChHHH
Q 031285          102 LDE-SVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN-----------------------------AVPHKL  150 (162)
Q Consensus       102 ~~~-~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d-----------------------------~~~~~l  150 (162)
                      .++ ++||+||++||++|+.+.|.|+++.++|++ ++.|+.|+++                             ...+ +
T Consensus        57 ~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~-~  135 (218)
T 3u5r_E           57 KDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQS-V  135 (218)
T ss_dssp             TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCH-H
T ss_pred             CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccH-H
Confidence            467 599999999999999999999999999965 4999999994                             3445 8


Q ss_pred             HHHcCCcccccC
Q 031285          151 VARAGVMVSLMI  162 (162)
Q Consensus       151 a~~~~I~~~Pti  162 (162)
                      ++.|+|..+|++
T Consensus       136 ~~~~~v~~~P~~  147 (218)
T 3u5r_E          136 AKAYGAACTPDF  147 (218)
T ss_dssp             HHHHTCCEESEE
T ss_pred             HHHcCCCCCCeE
Confidence            999999999863

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.25  E-value=9.5e-12  Score=97.04  Aligned_cols=74  Identities=11%  Similarity=0.100  Sum_probs=64.1

Q ss_pred             eecCCHHHHHHHHHHHhcCCCeEEEEEecCC--ChhhhhhhHhHHHHHHHhCCC------eEEEEEECCCChHHHHHHcC
Q 031285           84 TPIGSESQFDRVIAEAQQLDESVIIVWMASW--CRKCIYLKPKLEKLAADYHPR------LRFYNVDVNAVPHKLVARAG  155 (162)
Q Consensus        84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~W--C~~C~~~~p~l~~l~~~~~~~------v~~~~vd~d~~~~~la~~~~  155 (162)
                      .+.++.+.|.+.+.   .-+++++|+||++|  |++|+.+.|.++++++.+ ++      +.|+++|++.+++ ++++||
T Consensus         9 ~~~~~~~ql~~~~~---~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~-~~~~~~~~v~~~~vd~d~~~~-~~~~~g   83 (243)
T 2hls_A            9 LSEDFRRELRETLA---EMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEES-PTRNGGKLLKLNVYYRESDSD-KFSEFK   83 (243)
T ss_dssp             CCHHHHHHHHHHHT---TCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHS-CEETTEESEEEEEEETTTTHH-HHHHTT
T ss_pred             CCHHHHHHHHHHHH---hCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhc-cCCCCCceeEEEEecCCcCHH-HHHhcC
Confidence            34445677888882   45789999999999  999999999999999986 44      9999999999988 999999


Q ss_pred             CcccccC
Q 031285          156 VMVSLMI  162 (162)
Q Consensus       156 I~~~Pti  162 (162)
                      |+++||+
T Consensus        84 v~~~Pt~   90 (243)
T 2hls_A           84 VERVPTV   90 (243)
T ss_dssp             CCSSSEE
T ss_pred             CCcCCEE
Confidence            9999985

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.25  E-value=7.5e-12  Score=93.18  Aligned_cols=60  Identities=17%  Similarity=0.355  Sum_probs=51.4

Q ss_pred             CCC-eEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC-----------------------------CChHHH
Q 031285          102 LDE-SVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN-----------------------------AVPHKL  150 (162)
Q Consensus       102 ~~~-~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d-----------------------------~~~~~l  150 (162)
                      .++ ++||+||++||++|+.+.|.|+++.++|++ ++.++.|+++                             .+.+ +
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~-~  122 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQE-V  122 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCH-H
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchH-H
Confidence            466 599999999999999999999999999954 5999999984                             3445 8


Q ss_pred             HHHcCCcccccC
Q 031285          151 VARAGVMVSLMI  162 (162)
Q Consensus       151 a~~~~I~~~Pti  162 (162)
                      +++|+|..+|++
T Consensus       123 ~~~~~v~~~P~~  134 (196)
T 2ywi_A          123 AKAYDAACTPDF  134 (196)
T ss_dssp             HHHHTCCEESEE
T ss_pred             HHHhCCCCCCeE
Confidence            899999999963

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.24  E-value=6.5e-12  Score=89.77  Aligned_cols=58  Identities=21%  Similarity=0.292  Sum_probs=49.7

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC-----------------------ChHHHHHHcCCc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA-----------------------VPHKLVARAGVM  157 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------------------~~~~la~~~~I~  157 (162)
                      ..++++||+||++||++|+.+.|.|+++.++  +++.++.|+++.                       ... ++++|+|.
T Consensus        40 ~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~v~  116 (156)
T 1kng_A           40 FKGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGR-ASIEWGVY  116 (156)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSH-HHHHTTCC
T ss_pred             hCCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhH-HHHhcCcC
Confidence            3589999999999999999999999999876  569999988753                       335 88899999


Q ss_pred             cccc
Q 031285          158 VSLM  161 (162)
Q Consensus       158 ~~Pt  161 (162)
                      ++|+
T Consensus       117 ~~P~  120 (156)
T 1kng_A          117 GVPE  120 (156)
T ss_dssp             SSCE
T ss_pred             ccCe
Confidence            9995

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.23  E-value=2.4e-11  Score=89.76  Aligned_cols=58  Identities=16%  Similarity=0.435  Sum_probs=49.4

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC--h--HHHHHHcCCcc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV--P--HKLVARAGVMV  158 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~--~--~~la~~~~I~~  158 (162)
                      ..|+++||+||++||++|+.+.|.|+++.++|+ .++.++.|+++..  .  ..+++++++..
T Consensus        58 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~  120 (186)
T 1jfu_A           58 FRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTR  120 (186)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCT
T ss_pred             cCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCC
Confidence            358999999999999999999999999999995 5799999999865  1  22778888863

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.21  E-value=1.6e-11  Score=90.73  Aligned_cols=57  Identities=21%  Similarity=0.384  Sum_probs=48.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC-----------------------CChHHHHHHcCCc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-----------------------AVPHKLVARAGVM  157 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----------------------~~~~~la~~~~I~  157 (162)
                      ..|+++||+||++||++|+.+.|.|+++.++   ++.++.|+++                       .... ++++|+|.
T Consensus        56 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~v~  131 (176)
T 3kh7_A           56 LKGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGT-LGLDLGVY  131 (176)
T ss_dssp             GCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCH-HHHHHTCC
T ss_pred             hCCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcch-HHHHcCCC
Confidence            4689999999999999999999999999887   6889988853                       3344 78888999


Q ss_pred             cccc
Q 031285          158 VSLM  161 (162)
Q Consensus       158 ~~Pt  161 (162)
                      ++|+
T Consensus       132 ~~P~  135 (176)
T 3kh7_A          132 GAPE  135 (176)
T ss_dssp             SSCE
T ss_pred             CCCe
Confidence            8885

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.20  E-value=8.1e-12  Score=81.26  Aligned_cols=56  Identities=27%  Similarity=0.385  Sum_probs=48.6

Q ss_pred             EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcC--CcccccC
Q 031285          106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAG--VMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~la~~~~--I~~~Pti  162 (162)
                      -|+.||++||++|+.+.+.|+++++++ +++.+..+|++.++   ++++++++  +.++|++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i   62 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNER-DDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI   62 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHH-SSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcC-CCceEEEEecccChHHHHHHHHHhCCCCceeCeE
Confidence            367899999999999999999999998 57999999997654   23999999  9999985

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.20  E-value=1.7e-11  Score=89.86  Aligned_cols=73  Identities=11%  Similarity=0.087  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCCh-HHHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP-HKLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~-~~la~~~~I~~~Pti  162 (162)
                      .++++.+..+++.+|+++|+||++||..|+.+....   .++.+.+..++.++++|++... ..++++|++.++|++
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~  105 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYV  105 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEE
Confidence            467888887778899999999999999999996543   3444444446899999997643 238899999999985

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.20  E-value=1.1e-12  Score=105.49  Aligned_cols=62  Identities=13%  Similarity=0.165  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEE---C-CCChHHHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD---V-NAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd---~-d~~~~~la~~~~I~~~Pti  162 (162)
                      ..+.+.+.    +.  .+|+|||+||++|+++.|.|+++++++ +   .+.+|   . +++++ ++++|+|+++||+
T Consensus       190 ~~la~~l~----~~--~vV~F~A~WC~~Ck~l~p~le~lA~~l-~---~Vd~d~~d~~~~~~~-la~~~gI~~vPT~  255 (291)
T 3kp9_A          190 VGLAAHLR----QI--GGTMYGAYWCPHCQDQKELFGAAFDQV-P---YVECSPNGPGTPQAQ-ECTEAGITSYPTW  255 (291)
T ss_dssp             HHHHHHHH----HT--TCEEEECTTCHHHHHHHHHHGGGGGGS-C---EEESCSSCSSSCCCH-HHHTTTCCSTTEE
T ss_pred             HHHHHHhC----CC--CEEEEECCCCHHHHHHHHHHHHHHHHc-C---EEEEeecCchhhHHH-HHHHcCCcccCeE
Confidence            45666662    22  368999999999999999999999777 2   33333   2 23667 9999999999984

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.17  E-value=3.5e-11  Score=98.95  Aligned_cols=61  Identities=15%  Similarity=0.047  Sum_probs=52.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCC---------------------------ChHHHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA---------------------------VPHKLVA  152 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------------~~~~la~  152 (162)
                      ..++++||+||++||++|+.+.|.|++++++|++ ++.|+.|+++.                           ... +++
T Consensus        80 l~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~-l~~  158 (352)
T 2hyx_A           80 LRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYA-TWT  158 (352)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSH-HHH
T ss_pred             hCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHH-HHH
Confidence            3589999999999999999999999999999954 69999998753                           235 889


Q ss_pred             HcCCcccccC
Q 031285          153 RAGVMVSLMI  162 (162)
Q Consensus       153 ~~~I~~~Pti  162 (162)
                      +|+|..+|++
T Consensus       159 ~ygV~~~Pt~  168 (352)
T 2hyx_A          159 NYRNRYWPAE  168 (352)
T ss_dssp             HTTCCEESEE
T ss_pred             HcCCCccCEE
Confidence            9999999973

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.17  E-value=5.8e-11  Score=86.24  Aligned_cols=45  Identities=16%  Similarity=0.239  Sum_probs=40.7

Q ss_pred             cCCCeEEEEEecCCChh-hhhhhHhHHHHHHHhC-----CCeEEEEEECCC
Q 031285          101 QLDESVIIVWMASWCRK-CIYLKPKLEKLAADYH-----PRLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~-C~~~~p~l~~l~~~~~-----~~v~~~~vd~d~  145 (162)
                      ..|+++||+||++||++ |+.+.|.|+++.++|+     +++.++.|++|.
T Consensus        24 ~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~   74 (171)
T 2rli_A           24 FRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDP   74 (171)
T ss_dssp             TTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCS
T ss_pred             hCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECC
Confidence            35899999999999998 9999999999999984     479999999984

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.17  E-value=5.1e-11  Score=86.49  Aligned_cols=59  Identities=3%  Similarity=-0.022  Sum_probs=50.5

Q ss_pred             CCCe-EEEEEe-cCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC---------------------CChHHHHHHcCCc
Q 031285          102 LDES-VIIVWM-ASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN---------------------AVPHKLVARAGVM  157 (162)
Q Consensus       102 ~~~~-vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d---------------------~~~~~la~~~~I~  157 (162)
                      .|+. +||+|| ++||++|+.+.|.|+++.++|++ ++.++.|+.|                     ...+ ++++|++.
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~v~  105 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKK-IRELYGAK  105 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSH-HHHHTTCC
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHH-HHHHcCCC
Confidence            4776 999999 99999999999999999999954 5999999987                     3445 78888888


Q ss_pred             c----ccc
Q 031285          158 V----SLM  161 (162)
Q Consensus       158 ~----~Pt  161 (162)
                      +    +|+
T Consensus       106 ~~~~~~P~  113 (161)
T 3drn_A          106 GFILPARI  113 (161)
T ss_dssp             CSSSCCCE
T ss_pred             CcCcccce
Confidence            7    775

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.16  E-value=1.1e-11  Score=84.31  Aligned_cols=55  Identities=16%  Similarity=0.186  Sum_probs=47.4

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC--CChHHHHHHcCCcccccC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN--AVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d--~~~~~la~~~~I~~~Pti  162 (162)
                      ...++|++||++||++|+.+.+.|++++    .++.|..+|++  ++++ ++++|| .++|++
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~----~~i~~~~vdi~~~~~~e-l~~~~g-~~vP~l   70 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYK----DRFILQEVDITLPENST-WYERYK-FDIPVF   70 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTS----SSSEEEEEETTSSTTHH-HHHHSS-SSCSEE
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhh----hCCeEEEEECCCcchHH-HHHHHC-CCCCEE
Confidence            4667899999999999999999988764    34899999999  7766 999999 999975

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.16  E-value=7.8e-11  Score=87.11  Aligned_cols=45  Identities=18%  Similarity=0.201  Sum_probs=40.9

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~  145 (162)
                      .+|+++||+|||+||++|+.++|.|+++.++|++ ++.++.|+++.
T Consensus        36 ~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~   81 (180)
T 3kij_A           36 YKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQ   81 (180)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCC
T ss_pred             cCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCc
Confidence            4689999999999999999999999999999965 49999999764

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=3.1e-12  Score=92.24  Aligned_cols=48  Identities=21%  Similarity=0.385  Sum_probs=42.0

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHH-HHHHhC--CCeEEEEEECCCChH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEK-LAADYH--PRLRFYNVDVNAVPH  148 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~-l~~~~~--~~v~~~~vd~d~~~~  148 (162)
                      ..++++||+||++||++|+.+.|.|++ +.++++  .++.++.|+++...+
T Consensus        31 ~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~   81 (159)
T 2ls5_A           31 LRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLE   81 (159)
Confidence            358999999999999999999999998 888885  469999999887654

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.13  E-value=6.5e-11  Score=85.29  Aligned_cols=45  Identities=16%  Similarity=0.304  Sum_probs=40.7

Q ss_pred             cCCCeEEEEEecCCChh-hhhhhHhHHHHHHHhC-----CCeEEEEEECCC
Q 031285          101 QLDESVIIVWMASWCRK-CIYLKPKLEKLAADYH-----PRLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~-C~~~~p~l~~l~~~~~-----~~v~~~~vd~d~  145 (162)
                      ..|+++||+||++||++ |+.+.|.|+++.++++     +++.++.|++|.
T Consensus        21 ~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~   71 (164)
T 2ggt_A           21 YLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDP   71 (164)
T ss_dssp             GTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCT
T ss_pred             cCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCC
Confidence            35899999999999998 9999999999999984     389999999876

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.12  E-value=8.7e-11  Score=87.29  Aligned_cols=57  Identities=23%  Similarity=0.119  Sum_probs=46.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCC-------ChH---HHHHHcCCc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA-------VPH---KLVARAGVM  157 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------~~~---~la~~~~I~  157 (162)
                      .+|+++||+||++||++|+.+.|.|+++.++|++ ++.++.|++|.       .++   ++++++++.
T Consensus        47 ~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~  114 (185)
T 2gs3_A           47 YRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVK  114 (185)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCC
T ss_pred             cCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCC
Confidence            3589999999999999999999999999999954 59999999863       121   256777775

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.11  E-value=1.1e-10  Score=88.96  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=40.3

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d  144 (162)
                      .+|+++||+|||+||++|+.++|.|+++.++|++ ++.++.|+++
T Consensus        45 ~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           45 LRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             cCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            3689999999999999999999999999999954 5999999986

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.11  E-value=1e-10  Score=84.81  Aligned_cols=46  Identities=17%  Similarity=0.256  Sum_probs=41.2

Q ss_pred             cCCCeEEEEEecCCChh-hhhhhHhHHHHHHHhC----CCeEEEEEECCCC
Q 031285          101 QLDESVIIVWMASWCRK-CIYLKPKLEKLAADYH----PRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~-C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~  146 (162)
                      ..|+++||+||++||++ |+.+.|.|+++.++++    +++.++.|++|..
T Consensus        33 ~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~   83 (172)
T 2k6v_A           33 FQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPE   83 (172)
T ss_dssp             STTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTT
T ss_pred             hCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCC
Confidence            46899999999999998 9999999999999995    2799999998853

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.10  E-value=1.6e-10  Score=86.16  Aligned_cols=45  Identities=16%  Similarity=0.110  Sum_probs=40.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~  145 (162)
                      .+|+++||+||++||++|+.++|.|+++.++|++ ++.++.|++|.
T Consensus        46 ~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~   91 (190)
T 2vup_A           46 HKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQ   91 (190)
T ss_dssp             GTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCC
T ss_pred             cCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCc
Confidence            3689999999999999999999999999999954 49999999883

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.09  E-value=1.6e-10  Score=85.50  Aligned_cols=45  Identities=20%  Similarity=0.186  Sum_probs=40.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~  145 (162)
                      .+|+++||+||++||++|+.++|.|+++.++|++ ++.++.|+++.
T Consensus        47 ~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~   92 (181)
T 2p31_A           47 YRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQ   92 (181)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             cCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcC
Confidence            3589999999999999999999999999999954 49999999874

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.09  E-value=9e-11  Score=87.45  Aligned_cols=44  Identities=16%  Similarity=0.106  Sum_probs=40.4

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d  144 (162)
                      .+|+++||+||++||++|+.++|.|+++.++|++ ++.++.|++|
T Consensus        44 ~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d   88 (187)
T 3dwv_A           44 HKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSN   88 (187)
T ss_dssp             GTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBC
T ss_pred             hCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECc
Confidence            3689999999999999999999999999999955 5999999987

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.09  E-value=9.4e-11  Score=85.79  Aligned_cols=43  Identities=26%  Similarity=0.242  Sum_probs=38.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d  144 (162)
                      .+|+++||+|||+||++|+ ++|.|+++.++|++ ++.++.|+++
T Consensus        30 ~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d   73 (171)
T 3cmi_A           30 LKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCN   73 (171)
T ss_dssp             GTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred             cCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECc
Confidence            3589999999999999999 99999999999954 5999999874

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.08  E-value=2e-10  Score=83.12  Aligned_cols=44  Identities=20%  Similarity=0.225  Sum_probs=40.4

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d  144 (162)
                      .+|+++||+||++||++|+.++|.|+++.++|++ ++.++.|++|
T Consensus        30 ~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d   74 (170)
T 2p5q_A           30 FKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCN   74 (170)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             hCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECC
Confidence            3589999999999999999999999999999954 4999999986

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.08  E-value=1.6e-10  Score=83.29  Aligned_cols=58  Identities=12%  Similarity=0.163  Sum_probs=49.5

Q ss_pred             CCC-eEEEEEe-cCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCC-----------------------ChHHHHHHcC
Q 031285          102 LDE-SVIIVWM-ASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA-----------------------VPHKLVARAG  155 (162)
Q Consensus       102 ~~~-~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-----------------------~~~~la~~~~  155 (162)
                      .|+ ++||+|| ++||++|+.+.|.|.++.++|++ ++.++.|++|.                       ... +++.|+
T Consensus        34 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~  112 (160)
T 1xvw_A           34 RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGA-VSQAYG  112 (160)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTH-HHHHTT
T ss_pred             cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChH-HHHHcC
Confidence            466 9999998 99999999999999999999953 69999999874                       344 788888


Q ss_pred             Cc----ccc
Q 031285          156 VM----VSL  160 (162)
Q Consensus       156 I~----~~P  160 (162)
                      +.    ++|
T Consensus       113 v~~~~~~~p  121 (160)
T 1xvw_A          113 VFNEQAGIA  121 (160)
T ss_dssp             CEETTTTEE
T ss_pred             CccccCCCe
Confidence            87    777

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.07  E-value=1.9e-10  Score=85.44  Aligned_cols=44  Identities=18%  Similarity=0.275  Sum_probs=40.3

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~  145 (162)
                      .|+++||+|| ++||++|+.+.|.|+++.++|++ ++.++.|++|.
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~   75 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDT   75 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            5899999999 99999999999999999999953 69999999875

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.06  E-value=2.3e-10  Score=85.69  Aligned_cols=45  Identities=9%  Similarity=0.239  Sum_probs=40.7

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~  145 (162)
                      ..|+++||+|| ++||++|+.+.|.|.++.++|++ ++.++.|++|.
T Consensus        43 ~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~   89 (195)
T 2bmx_A           43 HPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDS   89 (195)
T ss_dssp             STTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSC
T ss_pred             hCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence            35899999999 99999999999999999999954 69999999874

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.06  E-value=1.6e-10  Score=86.63  Aligned_cols=44  Identities=16%  Similarity=0.302  Sum_probs=40.3

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~  145 (162)
                      .|+++||+|| ++||++|+.+.|.|+++.++|+ .++.++.|++|.
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~   77 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDS   77 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            6899999999 9999999999999999999994 469999999874

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.05  E-value=3.1e-10  Score=82.07  Aligned_cols=45  Identities=18%  Similarity=0.143  Sum_probs=40.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~  145 (162)
                      ..|+++||+||++||++|+.++|.|+++.++|++ ++.++.|+++.
T Consensus        29 ~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~   74 (169)
T 2v1m_A           29 YRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQ   74 (169)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             cCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCc
Confidence            3589999999999999999999999999999954 59999999863

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.01  E-value=5.2e-10  Score=82.72  Aligned_cols=44  Identities=27%  Similarity=0.231  Sum_probs=40.3

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d  144 (162)
                      .+|+++||+||++||++|+.+.|.|+++.++|++ ++.++.|+++
T Consensus        45 ~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   89 (183)
T 2obi_A           45 YRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCN   89 (183)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             cCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence            3589999999999999999999999999999954 5999999987

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.01  E-value=4e-10  Score=91.59  Aligned_cols=71  Identities=8%  Similarity=0.147  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC--CChHHHHHHcCCcc--cccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN--AVPHKLVARAGVMV--SLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d--~~~~~la~~~~I~~--~Pti  162 (162)
                      +.+++...+.   ...++++|.||++||++|+.+.|.|+++++++.+++.|+.+|++  .... +++.|||+.  +|++
T Consensus       123 ~~~~~~~~~~---~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~-~~~~fgi~~~~~P~~  197 (361)
T 3uem_A          123 TEQTAPKIFG---GEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQR-ILEFFGLKKEECPAV  197 (361)
T ss_dssp             STTTHHHHHS---CSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHH-HHHHTTCCTTTCSEE
T ss_pred             CcccHHHHhc---CCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHH-HHHHcCCCccCCccE
Confidence            4566777772   34567899999999999999999999999999888999999999  5667 999999998  9974

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.00  E-value=3.4e-10  Score=82.24  Aligned_cols=43  Identities=16%  Similarity=0.221  Sum_probs=40.3

Q ss_pred             CCCeEEEEEecCC-ChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285          102 LDESVIIVWMASW-CRKCIYLKPKLEKLAADYHPRLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~a~W-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~  145 (162)
                      .|+++||+||++| |++|+.+.|.++++.++| +++.++.|+.|.
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~   86 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADL   86 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSS
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCC
Confidence            4889999999999 999999999999999999 889999999874

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.98  E-value=7.6e-10  Score=83.34  Aligned_cols=44  Identities=2%  Similarity=0.107  Sum_probs=40.3

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~  145 (162)
                      .|+++||+|| ++||++|+.+.|.|+++.++|+ .++.++.|++|.
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~   80 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDS   80 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSC
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            5899999999 9999999999999999999995 469999999874

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.96  E-value=1.5e-09  Score=83.46  Aligned_cols=43  Identities=19%  Similarity=0.334  Sum_probs=39.0

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d  144 (162)
                      .+|++|||+|||+||++|+ .+|.|+++.++|+ .++.++.|+++
T Consensus        54 ~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           54 YVGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             GTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             hCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            4699999999999999999 8999999999995 36999999976

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.96  E-value=7.3e-10  Score=82.61  Aligned_cols=44  Identities=11%  Similarity=0.213  Sum_probs=40.3

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~  145 (162)
                      .|+++||+|| ++||++|+.+.|.|.++.++|+ .++.++.|++|.
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~   75 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDS   75 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence            6899999999 9999999999999999999994 579999999874

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.91  E-value=2.4e-09  Score=82.04  Aligned_cols=45  Identities=4%  Similarity=0.152  Sum_probs=40.5

Q ss_pred             cCCCeEEEEEec-CCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCC
Q 031285          101 QLDESVIIVWMA-SWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a-~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~  145 (162)
                      ..|+++||+||+ +||++|+...|.|+++.++|++ ++.|+.|++|.
T Consensus        67 ~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~  113 (222)
T 3ztl_A           67 YRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDS  113 (222)
T ss_dssp             GTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSC
T ss_pred             hCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence            358999999996 9999999999999999999954 59999999875

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.90  E-value=1.9e-09  Score=82.59  Aligned_cols=44  Identities=11%  Similarity=0.227  Sum_probs=40.1

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~  145 (162)
                      .|+++||+|| ++||++|+.+.|.|+++.++|+ .++.++.|++|.
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~  100 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDS  100 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4799999999 9999999999999999999994 479999999874

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.90  E-value=1.3e-09  Score=79.95  Aligned_cols=42  Identities=12%  Similarity=0.258  Sum_probs=36.4

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV  143 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~  143 (162)
                      ..++++|+.||.+||++|+.+.|.++++.+++ ++++++..++
T Consensus        20 ~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~-~~v~~~~~~~   61 (175)
T 3gyk_A           20 PEGDVTVVEFFDYNCPYCRRAMAEVQGLVDAD-PNVRLVYREW   61 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHC-TTEEEEEEEC
T ss_pred             CCCCEEEEEEECCCCccHHHHHHHHHHHHHhC-CCEEEEEEeC
Confidence            46788999999999999999999999999998 5577776663

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.89  E-value=1.8e-09  Score=82.36  Aligned_cols=44  Identities=14%  Similarity=0.248  Sum_probs=40.5

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~  145 (162)
                      +|+++||+|| ++||++|+.+.|.|.+++++|+ .++.++.|++|.
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~   96 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDS   96 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            6899999999 9999999999999999999994 579999999875

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.88  E-value=2.6e-09  Score=78.65  Aligned_cols=41  Identities=17%  Similarity=0.147  Sum_probs=38.2

Q ss_pred             CCCeEEEEEecCC-ChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285          102 LDESVIIVWMASW-CRKCIYLKPKLEKLAADYHPRLRFYNVDVN  144 (162)
Q Consensus       102 ~~~~vlV~F~a~W-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d  144 (162)
                      .|+++||+||++| |++|+.+.|.|+++.++  +++.|+.|+.|
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D   84 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKD   84 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECC
Confidence            5889999999999 99999999999999988  77999999987

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.88  E-value=2e-09  Score=78.23  Aligned_cols=44  Identities=14%  Similarity=0.305  Sum_probs=39.7

Q ss_pred             CCCeEEEEEecCCCh-hhhhhhHhHHHHHHHhCC---CeEEEEEECCC
Q 031285          102 LDESVIIVWMASWCR-KCIYLKPKLEKLAADYHP---RLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~-~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~  145 (162)
                      .|+++||+||++||+ +|+...|.|.++.++|+.   ++.++.|++|.
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~   79 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDP   79 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCC
Confidence            589999999999999 999999999999999842   49999999983

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=98.87  E-value=1.9e-09  Score=79.53  Aligned_cols=59  Identities=12%  Similarity=0.114  Sum_probs=46.0

Q ss_pred             CC-CeEEEEEecCCChhhhhh-hHhHHHHHHHhC-CCeE-EEEEECCCCh--HHHHHHcCCc-ccc
Q 031285          102 LD-ESVIIVWMASWCRKCIYL-KPKLEKLAADYH-PRLR-FYNVDVNAVP--HKLVARAGVM-VSL  160 (162)
Q Consensus       102 ~~-~~vlV~F~a~WC~~C~~~-~p~l~~l~~~~~-~~v~-~~~vd~d~~~--~~la~~~~I~-~~P  160 (162)
                      +| +++|++||++||++|+.+ +|.|.++.++++ .++. ++.|+.+...  ..+++++++. .+|
T Consensus        42 ~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp  107 (171)
T 2pwj_A           42 KDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIE  107 (171)
T ss_dssp             TTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred             CCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceE
Confidence            35 577889999999999999 999999999984 4688 9999987532  1266777763 455

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.86  E-value=2.8e-09  Score=81.26  Aligned_cols=43  Identities=21%  Similarity=0.176  Sum_probs=38.6

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d  144 (162)
                      .+|++|||+|||+||++| ..+|.|+++.++|++ ++.++.|+++
T Consensus        36 ~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d   79 (207)
T 2r37_A           36 YAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN   79 (207)
T ss_dssp             GTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             hCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence            469999999999999999 789999999999953 5999999875

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.86  E-value=3.9e-09  Score=76.16  Aligned_cols=44  Identities=7%  Similarity=0.121  Sum_probs=39.5

Q ss_pred             CCCeEEEEEec-CCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC
Q 031285          102 LDESVIIVWMA-SWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~a-~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~  145 (162)
                      .|+++||+||+ +||++|....|.|.++.++|+ .++.++.|+.|.
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~   79 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDS   79 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            57899999998 999999999999999999994 459999999873

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.86  E-value=1.5e-09  Score=73.25  Aligned_cols=63  Identities=19%  Similarity=0.209  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh------HHHHHHcCCcccccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP------HKLVARAGVMVSLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~------~~la~~~~I~~~Pti  162 (162)
                      .+++.+    +..  .++.||++||++|+.+.+.|+++..++ ++  +..+|++.++      +.+++.+++.++|++
T Consensus         4 ~~~~~i----~~~--~v~~f~~~~C~~C~~~~~~L~~~~~~~-~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i   72 (105)
T 1kte_A            4 FVNSKI----QPG--KVVVFIKPTCPFCRKTQELLSQLPFKE-GL--LEFVDITATSDTNEIQDYLQQLTGARTVPRV   72 (105)
T ss_dssp             HHHHHC----CTT--CEEEEECSSCHHHHHHHHHHHHSCBCT-TS--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE
T ss_pred             HHHhhc----ccC--CEEEEEcCCCHhHHHHHHHHHHcCCCC-Cc--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE
Confidence            455555    333  366799999999999999998876665 33  4456666552      237889999999985

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.84  E-value=2.4e-09  Score=81.79  Aligned_cols=38  Identities=18%  Similarity=0.285  Sum_probs=31.5

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEE
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD  142 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd  142 (162)
                      +++++|+.||++||++|+.+.|.++++.+.   ++.++.+.
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~  122 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLA  122 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEE
Confidence            578999999999999999999999998753   45655443

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.84  E-value=3.2e-09  Score=77.11  Aligned_cols=59  Identities=7%  Similarity=0.022  Sum_probs=48.0

Q ss_pred             cCCCeEEEEEec-CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--HHHHHcCCcccc
Q 031285          101 QLDESVIIVWMA-SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMVSL  160 (162)
Q Consensus       101 ~~~~~vlV~F~a-~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~la~~~~I~~~P  160 (162)
                      ..|+++||+||+ +||++|....|.|+++.++| .++.++.|+.|....  ..++++++..+|
T Consensus        40 ~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~~  101 (163)
T 1psq_A           40 FDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPFAQKRWCGAEGLDNAI  101 (163)
T ss_dssp             GTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHHTCTTSE
T ss_pred             hCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCHHHHHHHHHhcCCCCcE
Confidence            358899999995 99999999999999999999 889999999986432  256677773344

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.83  E-value=3.4e-09  Score=68.10  Aligned_cols=49  Identities=20%  Similarity=0.377  Sum_probs=40.0

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHH---HcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVA---RAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~---~~~I~~~Pti  162 (162)
                      ++.||++||++|+.+.+.|+++      ++.+..+|++.+++ +.+   ++++.++|++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~-~~~~~~~~g~~~vP~~   54 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPE-AAEALRAQGFRQLPVV   54 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHH-HHHHHHHTTCCSSCEE
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHH-HHHHHHHhCCCccCEE
Confidence            6779999999999999888753      46778899998866 443   5899999985

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.82  E-value=2.2e-09  Score=78.24  Aligned_cols=45  Identities=9%  Similarity=0.032  Sum_probs=40.9

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      ..|+++||+|| ++||++|...+|.|+++.++| .++.++.|+.|..
T Consensus        41 ~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~   86 (165)
T 1q98_A           41 FASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLP   86 (165)
T ss_dssp             GTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCH
T ss_pred             hCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCH
Confidence            35899999999 899999999999999999999 8899999998753

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.82  E-value=4.3e-09  Score=76.92  Aligned_cols=59  Identities=10%  Similarity=0.051  Sum_probs=48.7

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--HHHHHcCCcccc
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMVSL  160 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~la~~~~I~~~P  160 (162)
                      ..|+++||+|| ++||++|....|.|.++.+++ .++.++.|+.|....  ..++++++..+|
T Consensus        45 ~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~  106 (171)
T 2yzh_A           45 AKDVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDLPFAQKRFCESFNIQNVT  106 (171)
T ss_dssp             CCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHTTCCSSE
T ss_pred             hCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCCHHHHHHHHHHcCCCCeE
Confidence            35889999999 899999999999999999999 889999999986432  256777774344

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.81  E-value=1.4e-09  Score=82.49  Aligned_cols=46  Identities=11%  Similarity=0.333  Sum_probs=41.9

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCCh
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP  147 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~  147 (162)
                      .++++||.||+.|||+|+.+.|.+   +++.++++++++|.+++++.+.
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~~  160 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMG  160 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcCC
Confidence            467899999999999999999999   9999999778999999998753

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.79  E-value=2.3e-08  Score=72.01  Aligned_cols=43  Identities=2%  Similarity=0.034  Sum_probs=36.1

Q ss_pred             CCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285          103 DESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA  145 (162)
Q Consensus       103 ~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~  145 (162)
                      ++++||+|| ++||++|+..+|.|.++.++++++-.++.|+.|.
T Consensus        35 ~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~   78 (159)
T 2a4v_A           35 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADS   78 (159)
T ss_dssp             CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCC
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCC
Confidence            458999987 9999999999999999999995322888888763

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.78  E-value=1.2e-08  Score=76.65  Aligned_cols=45  Identities=20%  Similarity=0.136  Sum_probs=39.2

Q ss_pred             cCCCeEEEEEecCCChh-hhhhhHhHHHHHHHhC----CCeEEEEEECCC
Q 031285          101 QLDESVIIVWMASWCRK-CIYLKPKLEKLAADYH----PRLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~-C~~~~p~l~~l~~~~~----~~v~~~~vd~d~  145 (162)
                      ..|+++||+||++||++ |+.++|.|+++.++++    +++.++.|++|.
T Consensus        39 ~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~   88 (200)
T 2b7k_A           39 LLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDP   88 (200)
T ss_dssp             GTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCT
T ss_pred             cCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCC
Confidence            35899999999999998 9999999999877763    479999999884

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=98.76  E-value=8.4e-09  Score=77.30  Aligned_cols=78  Identities=12%  Similarity=0.075  Sum_probs=52.9

Q ss_pred             CCCcCceec--CC--HHHHHHHHHHHhcCCC-eEEEEEecCCChhhhh-hhHhHHHHHHHhC-CCeE-EEEEECCCCh--
Q 031285           78 PVSIPLTPI--GS--ESQFDRVIAEAQQLDE-SVIIVWMASWCRKCIY-LKPKLEKLAADYH-PRLR-FYNVDVNAVP--  147 (162)
Q Consensus        78 ~~~~~~~~i--~~--~~~f~~~l~~~~~~~~-~vlV~F~a~WC~~C~~-~~p~l~~l~~~~~-~~v~-~~~vd~d~~~--  147 (162)
                      .+.+.+..+  ++  .-.+.+.+     +|+ .+|+.||++||++|+. ++|.|++++++|+ .++. ++.|+.|...  
T Consensus        32 aPdf~l~~~~~~G~~~v~L~d~~-----~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~  106 (184)
T 3uma_A           32 LPNATFKEKTADGPVEVTTELLF-----KGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVM  106 (184)
T ss_dssp             CCCCEEEEEETTEEEEEEHHHHH-----TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHH
T ss_pred             CCCcEeecccCCCceEEeHHHHh-----CCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHH
Confidence            345555554  22  12345544     356 5566677999999999 7999999999994 4588 9999997632  


Q ss_pred             HHHHHHcCCc-ccc
Q 031285          148 HKLVARAGVM-VSL  160 (162)
Q Consensus       148 ~~la~~~~I~-~~P  160 (162)
                      ..+++++++. .+|
T Consensus       107 ~~f~~~~~~~~~fp  120 (184)
T 3uma_A          107 GAWATHSGGMGKIH  120 (184)
T ss_dssp             HHHHHHHTCTTTSE
T ss_pred             HHHHHHhCCCCceE
Confidence            2266677765 344

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.76  E-value=9.5e-09  Score=74.75  Aligned_cols=56  Identities=13%  Similarity=0.119  Sum_probs=45.7

Q ss_pred             CCCeEEEEEe-cCCChhhh-hhhHhHHHHHHHhC-CCeE-EEEEECCCChH--HHHHHcCCc
Q 031285          102 LDESVIIVWM-ASWCRKCI-YLKPKLEKLAADYH-PRLR-FYNVDVNAVPH--KLVARAGVM  157 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~-~~~p~l~~l~~~~~-~~v~-~~~vd~d~~~~--~la~~~~I~  157 (162)
                      +|+++||+|| ++||++|. ...|.|+++.++++ .++. ++.|+.|....  .+++++++.
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~   95 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPEN   95 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTC
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCC
Confidence            5889999999 89999999 89999999999984 5788 99999875321  255666764

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.76  E-value=7.8e-09  Score=65.17  Aligned_cols=49  Identities=18%  Similarity=0.355  Sum_probs=40.4

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHH---HcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVA---RAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~---~~~I~~~Pti  162 (162)
                      ++.||++||++|+.+.+.|+++      ++.+..+|++.+++ +.+   ++++.++|++
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~-~~~~~~~~~~~~vP~l   54 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDE-ARDYVMALGYVQAPVV   54 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHH-HHHHHHHTTCBCCCEE
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHH-HHHHHHHcCCCccCEE
Confidence            5779999999999999888754      46777889998876 555   8999999975

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.76  E-value=1.3e-08  Score=78.51  Aligned_cols=59  Identities=15%  Similarity=0.163  Sum_probs=47.3

Q ss_pred             CCCeEEEEEe-cCCChhhh-hhhHhHHHHHHHhC-CCe-EEEEEECCCChH--HHHHHcCCcccc
Q 031285          102 LDESVIIVWM-ASWCRKCI-YLKPKLEKLAADYH-PRL-RFYNVDVNAVPH--KLVARAGVMVSL  160 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~-~~~p~l~~l~~~~~-~~v-~~~~vd~d~~~~--~la~~~~I~~~P  160 (162)
                      +|+++||+|| ++||++|+ ..+|.|+++.++|+ .++ .++.|+.|....  .+++++++..+|
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~   96 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENIS   96 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSE
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceE
Confidence            5889999999 99999999 99999999999984 469 999999875321  255666765455

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.75  E-value=1.3e-08  Score=74.88  Aligned_cols=56  Identities=13%  Similarity=0.023  Sum_probs=45.1

Q ss_pred             CCCeEEEEEe-cCCChhhhh-hhHhHHHHHHHhC-CCe-EEEEEECCCChH--HHHHHcCCc
Q 031285          102 LDESVIIVWM-ASWCRKCIY-LKPKLEKLAADYH-PRL-RFYNVDVNAVPH--KLVARAGVM  157 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~-~~p~l~~l~~~~~-~~v-~~~~vd~d~~~~--~la~~~~I~  157 (162)
                      +|+++||.|| ++||++|+. .+|.|+++.++++ .++ .++.|+.|....  .+++++++.
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~   91 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGAD   91 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence            5788888886 999999999 9999999999984 469 999999875321  256677764

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.71  E-value=1.8e-08  Score=76.74  Aligned_cols=45  Identities=4%  Similarity=0.084  Sum_probs=41.0

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      .|+++||+|| ++||++|..++|.|.++.++|+ .++.++.|++|..
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~   93 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQ   93 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence            5899999999 9999999999999999999994 4799999999754

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.70  E-value=1.4e-08  Score=78.03  Aligned_cols=45  Identities=11%  Similarity=0.246  Sum_probs=41.1

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      +|+++||+|| ++||++|+..+|.|.++.++|+ .++.++.|++|..
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~  101 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSV  101 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence            6899999999 9999999999999999999994 5799999999764

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.70  E-value=3.8e-08  Score=72.72  Aligned_cols=56  Identities=9%  Similarity=0.131  Sum_probs=44.5

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChH--HHHHHcCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPH--KLVARAGV  156 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~--~la~~~~I  156 (162)
                      ..|+++||+|| ++||++|...+|.|+++.++|+ .++.++.|+.|....  .+++++++
T Consensus        49 ~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~  108 (179)
T 3ixr_A           49 YTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGF  108 (179)
T ss_dssp             GTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTC
T ss_pred             HCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence            35889999999 9999999999999999999994 469999999875321  14455554

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.69  E-value=5.1e-09  Score=72.26  Aligned_cols=55  Identities=15%  Similarity=0.165  Sum_probs=42.1

Q ss_pred             eEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh------HHHHHHcCCcccccC
Q 031285          105 SVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP------HKLVARAGVMVSLMI  162 (162)
Q Consensus       105 ~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~------~~la~~~~I~~~Pti  162 (162)
                      ..|+.||++||++|+.+.+.|+++..++ ++  +..+|++.++      +.+++.+|+.++|++
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~-~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v   79 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNKFSFKR-GA--YEIVDIKEFKPENELRDYFEQITGGKTVPRI   79 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTTSCBCT-TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEE
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHcCCCc-Cc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEE
Confidence            3567799999999999998887654332 22  7778888764      238899999999975

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.68  E-value=3.5e-09  Score=77.58  Aligned_cols=64  Identities=9%  Similarity=0.186  Sum_probs=49.1

Q ss_pred             CCcCceecCC-HHHHHHHHHHHhcCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285           79 VSIPLTPIGS-ESQFDRVIAEAQQLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus        79 ~~~~~~~i~~-~~~f~~~l~~~~~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      +.+.+...+. .-++.+..    .+|+++|+.|| ++||++|...+|.|.++.++|+ .++.++.|+.|..
T Consensus        12 PdF~l~~~~G~~v~Lsd~~----~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~   78 (164)
T 4gqc_A           12 PDFTLPNQDFEPVNLYEVL----KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSP   78 (164)
T ss_dssp             CCCEEEBTTSCEEEHHHHH----HTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCH
T ss_pred             cCcEeECCCCCEEEHHHHh----cCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCH
Confidence            3445554442 23466666    67999999998 9999999999999999999984 4699999988643

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.66  E-value=1.5e-08  Score=76.51  Aligned_cols=45  Identities=9%  Similarity=0.059  Sum_probs=40.7

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      ..|+++||+|| ++||++|....|.|+++.++| .++.++.|+.|..
T Consensus        76 ~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~~v~vv~Is~D~~  121 (200)
T 3zrd_A           76 FAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-ENTVVLCISSDLP  121 (200)
T ss_dssp             GTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-TTEEEEEEESSCH
T ss_pred             hCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-CCCEEEEEECCCH
Confidence            35899999999 789999999999999999999 7899999998754

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.65  E-value=2.7e-08  Score=75.74  Aligned_cols=37  Identities=19%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEE
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNV  141 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~v  141 (162)
                      .++++|+.||++||++|+.+.|.++++.+.   ++.+..+
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~---~v~v~~~  121 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL---GITVRYL  121 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEE
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC---CcEEEEE
Confidence            578899999999999999999999997653   3555544

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.64  E-value=2.3e-08  Score=72.75  Aligned_cols=58  Identities=12%  Similarity=0.036  Sum_probs=46.3

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--HHHHHcCCcccc
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMVSL  160 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~la~~~~I~~~P  160 (162)
                      ..|++++|+|| ++||++|....|.|+++.++  .++.++.|+.|....  .+++++++..+|
T Consensus        44 ~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~~~~vv~is~d~~~~~~~~~~~~~~~~~~  104 (166)
T 3p7x_A           44 YAGKKKLISVVPSIDTGVCDQQTRKFNSDASK--EEGIVLTISADLPFAQKRWCASAGLDNVI  104 (166)
T ss_dssp             GTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT--TTSEEEEEESSCHHHHHHHHHHHTCSSCE
T ss_pred             hCCCcEEEEEECCCCCCccHHHHHHHHHHhhc--CCCEEEEEECCCHHHHHHHHHHcCCCceE
Confidence            35889999999 78999999999999999877  679999999875432  256677774444

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.64  E-value=8.2e-09  Score=74.87  Aligned_cols=46  Identities=11%  Similarity=0.221  Sum_probs=34.2

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      .+|+++||+|| ++||++|+..+|.|+++.++++ .++.++.|+.|..
T Consensus        28 ~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~   75 (157)
T 4g2e_A           28 LKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPP   75 (157)
T ss_dssp             GTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCH
T ss_pred             HCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccch
Confidence            35899999999 9999999999999999999984 4699999988653

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=5.9e-08  Score=68.58  Aligned_cols=62  Identities=16%  Similarity=0.294  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC---hH---HHHHHcCCcccccC
Q 031285           89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PH---KLVARAGVMVSLMI  162 (162)
Q Consensus        89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~---~la~~~~I~~~Pti  162 (162)
                      .+.+++.+    ..++ ++ .|+++||++|+.+.+.|+++.      +.+..+|++..   ++   .+++.+++..+|+|
T Consensus        17 ~~~~~~~i----~~~~-vv-vf~~~~Cp~C~~~~~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l   84 (130)
T 2cq9_A           17 VNQIQETI----SDNC-VV-IFSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRI   84 (130)
T ss_dssp             HHHHHHHH----HHSS-EE-EEECSSCSHHHHHHHHHHHHT------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEE
T ss_pred             HHHHHHHH----cCCc-EE-EEEcCCChHHHHHHHHHHHcC------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEE
Confidence            35567776    3343 33 499999999999999888753      34455677655   32   27789999999985

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.63  E-value=4.4e-08  Score=72.88  Aligned_cols=53  Identities=4%  Similarity=-0.009  Sum_probs=43.4

Q ss_pred             CCCeEEEEEec-CCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChH--HHHHHc
Q 031285          102 LDESVIIVWMA-SWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPH--KLVARA  154 (162)
Q Consensus       102 ~~~~vlV~F~a-~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~--~la~~~  154 (162)
                      .|+++||+||+ +||++|+..+|.|.++.++|+ .++.++.|+.|....  .+++++
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~   85 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSS   85 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHC
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc
Confidence            48999999995 999999999999999999984 479999999875432  144555

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.63  E-value=2e-08  Score=78.82  Aligned_cols=63  Identities=11%  Similarity=0.169  Sum_probs=46.3

Q ss_pred             CCcCceecCCHHHH-HHHHHHHhcCCCe-EEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC
Q 031285           79 VSIPLTPIGSESQF-DRVIAEAQQLDES-VIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA  145 (162)
Q Consensus        79 ~~~~~~~i~~~~~f-~~~l~~~~~~~~~-vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~  145 (162)
                      +.+.+....+.-.+ .+.+    ..|+. ||++||++||++|..+.+.|.++.++|+ .++.++.|++|.
T Consensus        12 PdF~l~~~~G~v~l~~d~l----~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds   77 (249)
T 3a2v_A           12 PEMEVTTDHGVIKLPDHYV----SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDS   77 (249)
T ss_dssp             CCEEEEETTEEEEETHHHH----TTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             CCeEEEcCCCCEecHHHHh----hCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCC
Confidence            34444444332334 5554    36785 5668899999999999999999999994 369999999875

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.63  E-value=5.3e-08  Score=71.35  Aligned_cols=56  Identities=13%  Similarity=0.265  Sum_probs=44.4

Q ss_pred             CCCeEEEEEecCCCh-hhhhhhHhHHHHHHHhC---CCeEEEEEECCC--ChH---HHHHHcCCc
Q 031285          102 LDESVIIVWMASWCR-KCIYLKPKLEKLAADYH---PRLRFYNVDVNA--VPH---KLVARAGVM  157 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~-~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~--~~~---~la~~~~I~  157 (162)
                      .|+++||+||++||+ +|....|.|+++.++++   .++.++.|++|.  .++   ..++++++.
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~   91 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGID   91 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCC
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence            489999999999997 69999999999999994   469999998873  222   144566654

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.61  E-value=5.4e-08  Score=70.41  Aligned_cols=63  Identities=17%  Similarity=0.297  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC---hH---HHHHHcCCccccc
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PH---KLVARAGVMVSLM  161 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~---~la~~~~I~~~Pt  161 (162)
                      ..+.+++.+    ..++ ++| ||++||++|+.+.+.|+++.      +.+..+|++..   ++   .+++.+++.++|+
T Consensus        38 ~~~~~~~~i----~~~~-Vvv-f~~~~Cp~C~~~k~~L~~~~------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~  105 (146)
T 2ht9_A           38 PVNQIQETI----SDNC-VVI-FSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPR  105 (146)
T ss_dssp             CHHHHHHHH----HHCS-EEE-EECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCE
T ss_pred             HHHHHHHHh----cCCC-EEE-EECCCChhHHHHHHHHHHcC------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCe
Confidence            446677777    3343 333 99999999999999888763      33445666654   32   2788999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      |
T Consensus       106 i  106 (146)
T 2ht9_A          106 I  106 (146)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.58  E-value=7.8e-08  Score=71.63  Aligned_cols=45  Identities=16%  Similarity=0.286  Sum_probs=41.1

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~  145 (162)
                      ..++++|+.||++||++|+.+.|.++++.+++.+++.|..++++-
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~~   67 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIAF   67 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCS
T ss_pred             CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEeccc
Confidence            458899999999999999999999999999997689999999863

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.56  E-value=3e-08  Score=69.00  Aligned_cols=64  Identities=23%  Similarity=0.330  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhh-hHhHHHHHHHhCCCeEEEEEECCCCh------HHHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYL-KPKLEKLAADYHPRLRFYNVDVNAVP------HKLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~-~p~l~~l~~~~~~~v~~~~vd~d~~~------~~la~~~~I~~~Pti  162 (162)
                      ..+++.+    ...+  |+.|+++||++|+.+ .+.|+++.   .+.+.+..+|++..+      +.+++.+|+.++|+|
T Consensus        16 ~~~~~~i----~~~~--Vvvf~~~~Cp~C~~alk~~L~~~~---~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v   86 (118)
T 3c1r_A           16 KHVKDLI----AENE--IFVASKTYCPYCHAALNTLFEKLK---VPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI   86 (118)
T ss_dssp             HHHHHHH----HHSS--EEEEECSSCHHHHHHHHHHHTTSC---CCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE
T ss_pred             HHHHHHH----ccCc--EEEEEcCCCcCHHHHHHHHHHHcC---CCCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE
Confidence            4556666    3333  556999999999998 77765543   123778888888764      238889999999975

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=98.55  E-value=1.1e-07  Score=70.40  Aligned_cols=56  Identities=9%  Similarity=0.026  Sum_probs=41.2

Q ss_pred             CCCeEE-EEEecCCChhhh-hhhHhHHHHHHHhC-CCeEEEE-EECCCCh--HHHHHHcCCc
Q 031285          102 LDESVI-IVWMASWCRKCI-YLKPKLEKLAADYH-PRLRFYN-VDVNAVP--HKLVARAGVM  157 (162)
Q Consensus       102 ~~~~vl-V~F~a~WC~~C~-~~~p~l~~l~~~~~-~~v~~~~-vd~d~~~--~~la~~~~I~  157 (162)
                      +++++| +.||++||++|. ..+|.|.+++++|+ .++.++. |+.|...  ..+++++++.
T Consensus        42 ~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~  103 (173)
T 3mng_A           42 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAE  103 (173)
T ss_dssp             TTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred             CCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCC
Confidence            466555 455699999999 59999999999994 4688886 8877532  2266666665

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.54  E-value=1.9e-07  Score=68.54  Aligned_cols=44  Identities=16%  Similarity=0.292  Sum_probs=37.9

Q ss_pred             CCCeEEEEEecCCCh-hhhhhhHhHHHHHHHh---CCCeEEEEEECCC
Q 031285          102 LDESVIIVWMASWCR-KCIYLKPKLEKLAADY---HPRLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~-~C~~~~p~l~~l~~~~---~~~v~~~~vd~d~  145 (162)
                      +||++||+||++||+ +|...++.|.++.+.+   +.++.++.|++|.
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp   78 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDP   78 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCc
Confidence            599999999999996 8999999999888877   3468999998873

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.49  E-value=2.1e-07  Score=72.29  Aligned_cols=46  Identities=4%  Similarity=0.077  Sum_probs=41.2

Q ss_pred             CCCeEEEEEec-CCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh
Q 031285          102 LDESVIIVWMA-SWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP  147 (162)
Q Consensus       102 ~~~~vlV~F~a-~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~  147 (162)
                      .|+++||+||+ +||++|...+|.|.++.++|+ .++.++.|++|...
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~  123 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQF  123 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence            58999999999 999999999999999999994 46999999987643

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.46  E-value=9.8e-08  Score=62.51  Aligned_cols=50  Identities=24%  Similarity=0.390  Sum_probs=39.1

Q ss_pred             EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC--CChHHHHHHc-CCcccccC
Q 031285          106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN--AVPHKLVARA-GVMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d--~~~~~la~~~-~I~~~Pti  162 (162)
                      .++.|+++||++|+.+.+.|++.      ++.+..+|++  ...+ +.+.+ ++.++|++
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~------~i~~~~vdv~~~~~~~-l~~~~~~~~~vP~l   59 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK------GVKYTDIDASTSLRQE-MVQRANGRNTFPQI   59 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH------TCCEEEECSCHHHHHH-HHHHHHSSCCSCEE
T ss_pred             eEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCHHHHHH-HHHHhCCCCCcCEE
Confidence            46779999999999998888764      3556778887  3334 78888 99999975

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=98.45  E-value=3.4e-07  Score=70.38  Aligned_cols=62  Identities=10%  Similarity=0.269  Sum_probs=45.9

Q ss_pred             CCcCceecCCHHHHHHHHHHHhcCCC--eEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285           79 VSIPLTPIGSESQFDRVIAEAQQLDE--SVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus        79 ~~~~~~~i~~~~~f~~~l~~~~~~~~--~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      +.+.+....+.-.+.+..      |+  .+|+.||++||++|..+.+.|.++.++|+ .+++++.|++|..
T Consensus        12 P~F~l~~~~G~v~l~d~~------Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~   76 (224)
T 1prx_A           12 PNFEANTTVGRIRFHDFL------GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSV   76 (224)
T ss_dssp             CCCEEEETTEEEEHHHHH------TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCH
T ss_pred             CCcEEecCCCCEEHHHHc------CCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            344444444323455544      44  67777799999999999999999999994 4699999999864

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.42  E-value=4.5e-07  Score=61.41  Aligned_cols=61  Identities=11%  Similarity=0.127  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEec-----CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCccccc
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMA-----SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLM  161 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a-----~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pt  161 (162)
                      +.+++.+    +.++ ++| |+.     +||++|+.+.+.|+++      ++.|..+|++.+++   .+.+.+|+.++|+
T Consensus         8 ~~~~~~i----~~~~-vvv-f~~g~~~~~~C~~C~~~~~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~   75 (105)
T 2yan_A            8 ERLKVLT----NKAS-VML-FMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKAYSNWPTYPQ   75 (105)
T ss_dssp             HHHHHHH----TSSS-EEE-EESBCSSSBCTTHHHHHHHHHHHH------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCE
T ss_pred             HHHHHHh----ccCC-EEE-EEecCCCCCCCccHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHHHCCCCCCe
Confidence            4456666    4444 455 666     9999999999888765      36678889988765   1455689999997


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      |
T Consensus        76 v   76 (105)
T 2yan_A           76 L   76 (105)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.42  E-value=3.5e-07  Score=68.49  Aligned_cols=47  Identities=19%  Similarity=0.359  Sum_probs=41.9

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP  147 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~  147 (162)
                      ..++++||.||..||++|+.+.|.++++.+++.+++.|..+++.-..
T Consensus        22 ~~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~~~~   68 (193)
T 3hz8_A           22 QAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQK   68 (193)
T ss_dssp             STTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEECCCSG
T ss_pred             CCCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecCCCCc
Confidence            35789999999999999999999999999999778999999987543

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.41  E-value=3e-07  Score=72.14  Aligned_cols=47  Identities=4%  Similarity=0.042  Sum_probs=41.6

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP  147 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~  147 (162)
                      ..|+++||+|| ++||++|...+|.|.++.++|+ .++.++.|++|...
T Consensus        89 ~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~  137 (254)
T 3tjj_A           89 YRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQF  137 (254)
T ss_dssp             GTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHH
T ss_pred             HCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHH
Confidence            35899999999 9999999999999999999994 46999999988653

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=98.40  E-value=3.4e-07  Score=61.76  Aligned_cols=54  Identities=15%  Similarity=0.129  Sum_probs=40.6

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHc-----CCcccccC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA-----GVMVSLMI  162 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~-----~I~~~Pti  162 (162)
                      ..+.-|+.|+++||+.|+++...|+++      ++.+..+|++..++ ..+.+     +...+|+|
T Consensus        13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~------~i~y~~idI~~~~~-~~~~l~~~~~g~~~vP~i   71 (99)
T 3qmx_A           13 AVSAKIEIYTWSTCPFCMRALALLKRK------GVEFQEYCIDGDNE-AREAMAARANGKRSLPQI   71 (99)
T ss_dssp             CCCCCEEEEECTTCHHHHHHHHHHHHH------TCCCEEEECTTCHH-HHHHHHHHTTTCCCSCEE
T ss_pred             cCCCCEEEEEcCCChhHHHHHHHHHHC------CCCCEEEEcCCCHH-HHHHHHHHhCCCCCCCEE
Confidence            445556779999999999999888764      35667788888865 44433     89999975

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.40  E-value=4.2e-07  Score=70.49  Aligned_cols=62  Identities=6%  Similarity=0.103  Sum_probs=47.3

Q ss_pred             CCcCceecCCHHHHHHHHHHHhcCCC-eEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285           79 VSIPLTPIGSESQFDRVIAEAQQLDE-SVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus        79 ~~~~~~~i~~~~~f~~~l~~~~~~~~-~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      +.+.+....+.-++.+..      |+ ++|++|| ++||++|..+.+.|.++.++++ .+++++.|++|..
T Consensus        10 PdF~l~~~~G~v~l~d~~------Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~   74 (233)
T 2v2g_A           10 PNFEADSTIGKLKFHDWL------GNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNV   74 (233)
T ss_dssp             CCCEEEETTCCEEHHHHH------CSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCH
T ss_pred             CCcEEecCCCCEEHHHHC------CCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCH
Confidence            344455444423454444      55 8999998 9999999999999999999994 4699999999864

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.39  E-value=3.4e-07  Score=71.02  Aligned_cols=40  Identities=10%  Similarity=0.253  Sum_probs=33.5

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV  143 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~  143 (162)
                      +++.+|+.||.+||++|+++.+.++++.++  +++++..+++
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~  135 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLV  135 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEEC
Confidence            467789999999999999999999988775  4788776654

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=98.35  E-value=4.9e-07  Score=61.83  Aligned_cols=61  Identities=15%  Similarity=0.436  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC----h---HHHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV----P---HKLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~---~~la~~~~I~~~Pti  162 (162)
                      +.+++.+    +.++  |+.|+++||++|++..+.|+++      ++.+..+|++..    +   +.+.+.+|+..+|+|
T Consensus        10 ~~~~~~i----~~~~--v~vy~~~~Cp~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i   77 (113)
T 3rhb_A           10 ESIRKTV----TENT--VVIYSKTWCSYCTEVKTLFKRL------GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV   77 (113)
T ss_dssp             HHHHHHH----HHSS--EEEEECTTCHHHHHHHHHHHHT------TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE
T ss_pred             HHHHHHH----hcCC--EEEEECCCChhHHHHHHHHHHc------CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE
Confidence            3455555    3344  5669999999999999888754      233445666542    2   114556799999975

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.33  E-value=7e-07  Score=56.97  Aligned_cols=50  Identities=16%  Similarity=0.327  Sum_probs=38.4

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      ++.|+++||++|+.+.+.+++.      ++.+..+|++.+++   .+.+.+++.++|++
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l   55 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQI   55 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEE
T ss_pred             EEEEECCCChhHHHHHHHHHHC------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence            5679999999999998888754      35566778876543   25678899999975

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.32  E-value=4.4e-07  Score=69.55  Aligned_cols=44  Identities=11%  Similarity=0.265  Sum_probs=37.5

Q ss_pred             CC--eEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          103 DE--SVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       103 ~~--~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      |+  .+|+.||++||++|..+.+.|.++.++|+ .+++++.|++|..
T Consensus        30 Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~   76 (220)
T 1xcc_A           30 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSK   76 (220)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence            55  55666699999999999999999999994 4699999999864

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.31  E-value=9e-07  Score=65.63  Aligned_cols=44  Identities=11%  Similarity=0.239  Sum_probs=39.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d  144 (162)
                      ..++++|+.||..||++|+.+.|.++++.+++++++.|..+.+.
T Consensus        23 ~~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~   66 (192)
T 3h93_A           23 QPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPAL   66 (192)
T ss_dssp             STTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehh
Confidence            35889999999999999999999999999999778888888774

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=98.30  E-value=6.4e-07  Score=58.75  Aligned_cols=51  Identities=24%  Similarity=0.402  Sum_probs=39.2

Q ss_pred             EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285          106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      .++.|+++||++|+.+.+.|++.      ++.+..+|++.+++   ++.+.+++.++|++
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l   60 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK------GAEFNEIDASATPELRAEMQERSGRNTFPQI   60 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence            36779999999999998877653      46677788887654   25558899999974

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.26  E-value=6.9e-06  Score=57.67  Aligned_cols=71  Identities=11%  Similarity=0.099  Sum_probs=59.4

Q ss_pred             CCCcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCc
Q 031285           78 PVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM  157 (162)
Q Consensus        78 ~~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~  157 (162)
                      ++......+++.+++++.+    ..+.++||-|+++||++|   .+.|.++++.+ +++.|+.++.   .+ ++++|++.
T Consensus        18 gP~~~~~~i~s~~e~e~fi----~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d~~F~~t~~---~~-v~~~~~v~   85 (124)
T 2l4c_A           18 GAAQEPTWLTDVPAAMEFI----AATEVAVIGFFQDLEIPA---VPILHSMVQKF-PGVSFGISTD---SE-VLTHYNIT   85 (124)
T ss_dssp             CCSCCCEECCSHHHHHHHH----HTSSEEEEEECSCTTSTH---HHHHHHHHHHC-TTSEEEEECC---HH-HHHHTTCC
T ss_pred             CCCCcceEcCCHHHHHHHH----hcCCCEEEEEECCCCChh---HHHHHHHHHhC-CCceEEEECh---HH-HHHHcCCC
Confidence            4444567788999999999    678999999999999999   56899999999 8999987743   66 89999998


Q ss_pred             cccc
Q 031285          158 VSLM  161 (162)
Q Consensus       158 ~~Pt  161 (162)
                       .|+
T Consensus        86 -~~~   88 (124)
T 2l4c_A           86 -GNT   88 (124)
T ss_dssp             -SSC
T ss_pred             -CCe
Confidence             554

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.25  E-value=4.4e-07  Score=67.76  Aligned_cols=44  Identities=11%  Similarity=0.351  Sum_probs=38.5

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~  145 (162)
                      .++++||.||+.||++|+.+.|.+   +++.+++.++++|+.+++.-
T Consensus        13 ~~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   59 (189)
T 3l9v_A           13 VDAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSL   59 (189)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSS
T ss_pred             CCCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechh
Confidence            357899999999999999999997   68888886689999998865

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=98.14  E-value=5.6e-07  Score=63.61  Aligned_cols=66  Identities=12%  Similarity=0.253  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhh-hHhHHHHHHHhCCCeEEEEEECCCCh------HHHHHHcCCcccc
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYL-KPKLEKLAADYHPRLRFYNVDVNAVP------HKLVARAGVMVSL  160 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~-~p~l~~l~~~~~~~v~~~~vd~d~~~------~~la~~~~I~~~P  160 (162)
                      ..+.+++.+    ...+  |+.|+.+||+.|++. .+.|+++..+   .+.+..+|++..+      +.+.+.+|+..+|
T Consensus        26 ~~~~v~~~i----~~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~~---~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP   96 (129)
T 3ctg_A           26 TVAHVKDLI----GQKE--VFVAAKTYCPYCKATLSTLFQELNVP---KSKALVLELDEMSNGSEIQDALEEISGQKTVP   96 (129)
T ss_dssp             HHHHHHHHH----HHSS--EEEEECTTCHHHHHHHHHHHTTSCCC---GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHH----cCCC--EEEEECCCCCchHHHHHHHHHhcCcc---CCCcEEEEccccCCHHHHHHHHHHHhCCCCCC
Confidence            335566666    3343  567999999999998 7777654311   1445555555432      2388889999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      .|
T Consensus        97 ~v   98 (129)
T 3ctg_A           97 NV   98 (129)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=98.11  E-value=4.5e-07  Score=58.69  Aligned_cols=54  Identities=15%  Similarity=0.170  Sum_probs=38.6

Q ss_pred             eEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCC-----cccccC
Q 031285          105 SVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGV-----MVSLMI  162 (162)
Q Consensus       105 ~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~la~~~~I-----~~~Pti  162 (162)
                      ..++.|+++||++|++....|+++    +-.+.++.+|.+..+   +++.+.+|.     ..+|+|
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~----~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i   65 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEEN----NIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQI   65 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHT----TCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEE
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHc----CCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEE
Confidence            447789999999999988776543    334566667765542   227777888     899975

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=98.10  E-value=6e-06  Score=61.53  Aligned_cols=63  Identities=13%  Similarity=0.093  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhcCCCeEEEEEecCCChhhhh-hhHhHHHHHHHhC-CCe-EEEEEECCCCh--HHHHHHcCCc
Q 031285           91 QFDRVIAEAQQLDESVIIVWMASWCRKCIY-LKPKLEKLAADYH-PRL-RFYNVDVNAVP--HKLVARAGVM  157 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~-~~p~l~~l~~~~~-~~v-~~~~vd~d~~~--~~la~~~~I~  157 (162)
                      .+.+.+    ..++.||+.||+.||+.|.. ..|.|.+..++++ .++ .++.|..|...  ..+++++++.
T Consensus        40 sLsd~~----~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~  107 (176)
T 4f82_A           40 SVRDQV----AGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTA  107 (176)
T ss_dssp             EHHHHH----TTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred             eHHHHh----CCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence            356665    33345677888999999999 9999999999994 468 89999988532  2266677765

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.10  E-value=1.2e-06  Score=57.38  Aligned_cols=50  Identities=10%  Similarity=0.186  Sum_probs=36.0

Q ss_pred             EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC-----C----hHHHHHHcCCcccccC
Q 031285          106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA-----V----PHKLVARAGVMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----~----~~~la~~~~I~~~Pti  162 (162)
                      .++.|+++||++|++..+.|+++.    -.+..  +|++.     .    .+ +.+.+++..+|+|
T Consensus        13 ~v~ly~~~~Cp~C~~~~~~L~~~g----i~~~~--~~v~~~~~~~~~~~~~~-l~~~~g~~~vP~l   71 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTLEFLKREG----VDFEV--IWIDKLEGEERKKVIEK-VHSISGSYSVPVV   71 (92)
T ss_dssp             SSEEEECTTCHHHHHHHHHHHHHT----CCCEE--EEGGGCCHHHHHHHHHH-HHHHHSSSCSCEE
T ss_pred             eEEEEECCCChHHHHHHHHHHHcC----CCcEE--EEeeeCCccchHHHHHH-HHHhcCCCCcCEE
Confidence            366799999999999988877653    23344  55552     2    33 7788999999975

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.09  E-value=1.3e-05  Score=61.16  Aligned_cols=70  Identities=9%  Similarity=0.010  Sum_probs=57.3

Q ss_pred             CHHHHHHHHHHHhcCC-CeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC--ChHHHHHHcCCc--ccccC
Q 031285           88 SESQFDRVIAEAQQLD-ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA--VPHKLVARAGVM--VSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~-~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~la~~~~I~--~~Pti  162 (162)
                      +.+++....    ..+ ..+++.|..+||+.|..+.+.|+++++++.+++.|+.+|.+.  ... +++.||+.  .+|+|
T Consensus       119 t~~n~~~~~----~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~-~l~~fgl~~~~~P~~  193 (227)
T 4f9z_D          119 NPVTVIGLF----NSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGK-VISFFKLKESQLPAL  193 (227)
T ss_dssp             CHHHHHHHH----HSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHH-HHHHTTCCGGGCSEE
T ss_pred             CcccHHHHh----ccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHH-HHHHcCCCcccCCEE
Confidence            567778777    455 445566778899999999999999999998889999999974  555 88999998  78864

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.07  E-value=4.8e-06  Score=61.64  Aligned_cols=44  Identities=18%  Similarity=0.300  Sum_probs=39.3

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d  144 (162)
                      ..++++|+.||.+||++|+.+.|.++++.++++.++.|..+.+.
T Consensus        20 ~~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~   63 (195)
T 2znm_A           20 QSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVV   63 (195)
T ss_dssp             SSSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEECC
T ss_pred             CCCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEeccc
Confidence            45788999999999999999999999999999667888888764

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=98.05  E-value=3.3e-06  Score=62.79  Aligned_cols=41  Identities=10%  Similarity=0.141  Sum_probs=37.2

Q ss_pred             CCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285          103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA  145 (162)
Q Consensus       103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~  145 (162)
                      ++++||.|+..||++|+++.|.++++.+++  ++.|.++.+.-
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~--~v~~~~~p~~~   62 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA--GTDIGKMHITF   62 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH--TSCCEEEECCS
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh--CCeEEEEeccC
Confidence            688999999999999999999999999999  68888888753

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=98.04  E-value=1.3e-06  Score=58.90  Aligned_cols=52  Identities=21%  Similarity=0.184  Sum_probs=34.6

Q ss_pred             eEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC-h---HHHH----HHcCCcccccC
Q 031285          105 SVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV-P---HKLV----ARAGVMVSLMI  162 (162)
Q Consensus       105 ~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~---~~la----~~~~I~~~Pti  162 (162)
                      ..++.||++||++|+++.+.|+++.      +.+-.+|++.. .   .++.    +.+++.++|+|
T Consensus        22 ~~v~ly~~~~Cp~C~~ak~~L~~~~------i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l   81 (103)
T 3nzn_A           22 GKVIMYGLSTCVWCKKTKKLLTDLG------VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTT   81 (103)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHHHT------BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEE
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcC------CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEE
Confidence            3466799999999999998887653      23344555542 1   1132    34689999975

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=98.02  E-value=1.6e-06  Score=59.71  Aligned_cols=62  Identities=11%  Similarity=0.202  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC--Ch----HHHHHHcCCcccccC
Q 031285           89 ESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA--VP----HKLVARAGVMVSLMI  162 (162)
Q Consensus        89 ~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~----~~la~~~~I~~~Pti  162 (162)
                      .+.+++.+    +.++  |+.|+.+||+.|++..+.|+++      ++.+-.+|++.  ..    +.+.+..|...+|.+
T Consensus         7 ~~~~~~~i----~~~~--v~vy~~~~Cp~C~~ak~~L~~~------~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~v   74 (114)
T 3h8q_A            7 RRHLVGLI----ERSR--VVIFSKSYCPHSTRVKELFSSL------GVECNVLELDQVDDGARVQEVLSEITNQKTVPNI   74 (114)
T ss_dssp             HHHHHHHH----HHCS--EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEE
T ss_pred             HHHHHHHh----ccCC--EEEEEcCCCCcHHHHHHHHHHc------CCCcEEEEecCCCChHHHHHHHHHHhCCCccCEE
Confidence            35566766    4444  3349999999999998777754      34455566664  32    225677889999974

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.02  E-value=9e-06  Score=55.32  Aligned_cols=61  Identities=11%  Similarity=0.107  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEec-----CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCccccc
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMA-----SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLM  161 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a-----~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pt  161 (162)
                      +.+++.+    +.++ ++| |+.     +||++|++....|+++      ++.+..+|++.+++   .+.+..|...+|.
T Consensus         6 ~~~~~~i----~~~~-vvv-y~~g~~~~~~Cp~C~~ak~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~   73 (109)
T 1wik_A            6 SGLKVLT----NKAS-VML-FMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKTFSNWPTYPQ   73 (109)
T ss_dssp             CCHHHHH----TTSS-EEE-EESSTTTCCCSSTHHHHHHHHHHT------CSCEEEEESSSCHHHHHHHHHHHSCCSSCE
T ss_pred             HHHHHHh----ccCC-EEE-EEecCCCCCCCchHHHHHHHHHHc------CCCeEEEECCCCHHHHHHHHHHhCCCCCCE
Confidence            3467777    4454 444 555     9999999998777643      46788899988764   2555678888886


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      |
T Consensus        74 i   74 (109)
T 1wik_A           74 L   74 (109)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=97.98  E-value=5.4e-06  Score=64.01  Aligned_cols=55  Identities=13%  Similarity=0.125  Sum_probs=42.5

Q ss_pred             CCCeEEEEEecCC-Chhhh-----hhhHhHHHHHHHhCCCeEEEEEECCCCh--HHHHHHcCCcccc
Q 031285          102 LDESVIIVWMASW-CRKCI-----YLKPKLEKLAADYHPRLRFYNVDVNAVP--HKLVARAGVMVSL  160 (162)
Q Consensus       102 ~~~~vlV~F~a~W-C~~C~-----~~~p~l~~l~~~~~~~v~~~~vd~d~~~--~~la~~~~I~~~P  160 (162)
                      .|+++||+||+.| |++|.     ..++.|.++   + .++.++.|+.|...  ..+++++++..+|
T Consensus        47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~-~gv~VvgIS~Ds~~~~~~f~~~~gl~~fp  109 (224)
T 3keb_A           47 SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W-PHLKLIVITVDSPSSLARARHEHGLPNIA  109 (224)
T ss_dssp             TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C-TTSEEEEEESSCHHHHHHHHHHHCCTTCE
T ss_pred             CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c-CCCEEEEEECCCHHHHHHHHHHcCCCCce
Confidence            5889999999998 99999     888888776   5 67999999987532  1266677775454

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.88  E-value=1.5e-05  Score=53.17  Aligned_cols=49  Identities=22%  Similarity=0.487  Sum_probs=36.6

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHc-----CCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARA-----GVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~-----~I~~~Pti  162 (162)
                      |+.|+.+||+.|++....|++      .++.|..+|++.+++ ..+.+     |.+.+|+|
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~------~gi~y~~idi~~d~~-~~~~~~~~~~G~~tVP~I   59 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTA------NRIAYDEVDIEHNRA-AAEFVGSVNGGNRTVPTV   59 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHH------TTCCCEEEETTTCHH-HHHHHHHHSSSSSCSCEE
T ss_pred             EEEEcCCCCHhHHHHHHHHHh------cCCceEEEEcCCCHH-HHHHHHHHcCCCCEeCEE
Confidence            667999999999998766553      357778899998876 33322     78889975

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.86  E-value=3.1e-05  Score=56.26  Aligned_cols=44  Identities=14%  Similarity=0.105  Sum_probs=38.6

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHh--CCCeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d  144 (162)
                      ..++++|+.|+..||++|+.+.|.++++.++|  .++++++..+..
T Consensus        25 ~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~   70 (175)
T 1z6m_A           25 SNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   70 (175)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCC
Confidence            45788999999999999999999999999998  678888887764

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.86  E-value=2.4e-05  Score=57.60  Aligned_cols=43  Identities=19%  Similarity=0.268  Sum_probs=38.3

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN  144 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d  144 (162)
                      .++++|+.||..||++|+.+.|.+.++.+++++++.+..+.+.
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~   66 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAV   66 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEECC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCcc
Confidence            5677999999999999999999999999999768888888763

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=97.70  E-value=6.5e-05  Score=57.21  Aligned_cols=68  Identities=15%  Similarity=0.130  Sum_probs=57.4

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      +.+.+.+.+++++.+    +.++++||-|+++||   ..+.+.|.++++.+ +++.|+..   .+.+ ++++|+|.. |+
T Consensus        10 ~~~~l~s~~~~~~~l----~~~~v~vVgff~~~~---~~~~~~f~~~A~~l-~~~~F~~t---~~~~-v~~~~~v~~-p~   76 (227)
T 4f9z_D           10 EPTWLTDVPAAMEFI----AATEVAVIGFFQDLE---IPAVPILHSMVQKF-PGVSFGIS---TDSE-VLTHYNITG-NT   76 (227)
T ss_dssp             CCEECCSHHHHHHHH----HTSSEEEEEECSCSC---STHHHHHHHHTTTC-TTSEEEEE---CCHH-HHHHTTCCS-SE
T ss_pred             CCeeeCCHHHHHHHH----hcCCeEEEEEecCCC---chhHHHHHHHHHhC-CCceEEEE---CCHH-HHHHcCCCC-Ce
Confidence            567788999999998    778999999999995   67889999999999 68898774   3556 999999987 76


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      |
T Consensus        77 i   77 (227)
T 4f9z_D           77 I   77 (227)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.68  E-value=3.1e-05  Score=57.82  Aligned_cols=44  Identities=11%  Similarity=0.334  Sum_probs=37.7

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~  145 (162)
                      .++++||.|+..||++|+.+.|.+   +++.+++.++++|+.+++.-
T Consensus        20 ~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~~   66 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEF   66 (191)
T ss_dssp             CSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECSS
T ss_pred             CCCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEeccc
Confidence            357899999999999999999987   69999996678888887653

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.68  E-value=6.5e-05  Score=55.88  Aligned_cols=73  Identities=7%  Similarity=0.009  Sum_probs=55.0

Q ss_pred             HHHHHHHHHH----hcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCChH--------------
Q 031285           90 SQFDRVIAEA----QQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPH--------------  148 (162)
Q Consensus        90 ~~f~~~l~~~----~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~--------------  148 (162)
                      ..|++.+..|    +..+|+++|+++++||..|..+....   +++.+-+..++.+...|++....              
T Consensus        38 gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~  117 (178)
T 2ec4_A           38 GSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGS  117 (178)
T ss_dssp             SCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCH
T ss_pred             CCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHH
Confidence            4588888887    78999999999999999999887332   34444444468999999987641              


Q ss_pred             HHH---HHcCCcccccC
Q 031285          149 KLV---ARAGVMVSLMI  162 (162)
Q Consensus       149 ~la---~~~~I~~~Pti  162 (162)
                      .++   +.|++.++|++
T Consensus       118 ~~a~~~~~~~~~~~P~l  134 (178)
T 2ec4_A          118 VVAQTIRTQKTDQFPLF  134 (178)
T ss_dssp             HHHHHHHHSCSTTCSEE
T ss_pred             HHHHHHhhcCCCCCCeE
Confidence            134   34899999974

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.00014  Score=55.83  Aligned_cols=46  Identities=4%  Similarity=0.040  Sum_probs=41.1

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      ..|+.+|+.|| +.||+.|..+.+.|++..++++ .++.++.|++|..
T Consensus        50 ~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~   97 (216)
T 3sbc_A           50 YKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSE   97 (216)
T ss_dssp             GTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCH
T ss_pred             hCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCch
Confidence            45899999999 9999999999999999999994 5799999998754

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.00012  Score=51.51  Aligned_cols=66  Identities=17%  Similarity=0.255  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHH----HHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHK----LVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~----la~~~~I~~~Pti  162 (162)
                      .+|++++    +..+  |+.|..+||+.|++....|++.. .++..+..+.||.+.+..+    +.+..|...+|.|
T Consensus         5 ~~~~~ii----~~~~--Vvvysk~~Cp~C~~ak~lL~~~~-~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~I   74 (127)
T 3l4n_A            5 KEYSLIL----DLSP--IIIFSKSTCSYSKGMKELLENEY-QFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNL   74 (127)
T ss_dssp             HHHHHHH----TSCS--EEEEECTTCHHHHHHHHHHHHHE-EEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE
T ss_pred             HHHHHHH----ccCC--EEEEEcCCCccHHHHHHHHHHhc-ccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceE
Confidence            5677877    4444  56689999999999987777631 1123445555554433221    3344588888864

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=97.26  E-value=0.00042  Score=55.88  Aligned_cols=69  Identities=14%  Similarity=0.084  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHhcC--CCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCChHHHH----HHcCCc-cc
Q 031285           89 ESQFDRVIAEAQQL--DESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPHKLV----ARAGVM-VS  159 (162)
Q Consensus        89 ~~~f~~~l~~~~~~--~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~la----~~~~I~-~~  159 (162)
                      .+++.++.    ..  .+..++.|..+||+.|..+.+.++++++++.+  ++.|+.+|.+..+. ++    +.||+. .+
T Consensus       233 ~~~~~~~~----~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~~~~-~~~~~~~~~gi~~~~  307 (350)
T 1sji_A          233 PEDMFETW----EDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPL-LVAYWEKTFKIDLFK  307 (350)
T ss_dssp             TTTHHHHH----HSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGGCHH-HHHHHHHHCCSCTTS
T ss_pred             hhhHHHHh----cCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchhhHH-HHHHHHhhcCCCccC
Confidence            34566655    33  24455669999999999999999999999954  79999999998887 77    789998 46


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      |++
T Consensus       308 P~~  310 (350)
T 1sji_A          308 PQI  310 (350)
T ss_dssp             CEE
T ss_pred             CcE
Confidence            864

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=97.26  E-value=0.0002  Score=50.92  Aligned_cols=62  Identities=18%  Similarity=0.165  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEec----CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMA----SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a----~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      +.+++.+    ..+ .|+|+.++    +||+.|++....|+++      ++.+..+|++.+++   .+.+..|...+|.|
T Consensus        26 ~~v~~~i----~~~-~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~------gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V   94 (135)
T 2wci_A           26 EKIQRQI----AEN-PILLYMKGSPKLPSCGFSAQAVQALAAC------GERFAYVDILQNPDIRAELPKYANWPTFPQL   94 (135)
T ss_dssp             HHHHHHH----HHC-SEEEEESBCSSSBSSHHHHHHHHHHHTT------CSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred             HHHHHHh----ccC-CEEEEEEecCCCCCCccHHHHHHHHHHc------CCceEEEECCCCHHHHHHHHHHHCCCCcCEE
Confidence            4455555    334 45565555    8999999988776532      46677888887764   14445688888864

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=97.21  E-value=0.00049  Score=50.36  Aligned_cols=44  Identities=9%  Similarity=0.184  Sum_probs=37.4

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhH-HHHHHHhCCCeEEEEEECCC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKL-EKLAADYHPRLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l-~~l~~~~~~~v~~~~vd~d~  145 (162)
                      ..++++|+||..+|++|..+.+.+ .++.+++..++++..+.+.-
T Consensus        16 ~~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~v~~~~~~l~~   60 (195)
T 3c7m_A           16 NADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLET   60 (195)
T ss_dssp             SCTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTCEEEEEECTT
T ss_pred             CCCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCCceEEEEEecCc
Confidence            456788999999999999999999 99999996678887777653

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=97.10  E-value=0.00057  Score=52.45  Aligned_cols=46  Identities=4%  Similarity=0.100  Sum_probs=41.1

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      ..|+.+|+.|| +.||+.|..+...|.+..++++ .++.++.|++|..
T Consensus        54 ~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~  101 (219)
T 3tue_A           54 YKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSE  101 (219)
T ss_dssp             GTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCH
T ss_pred             hCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCch
Confidence            45899999999 9999999999999999999994 4799999998764

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=97.02  E-value=0.0011  Score=49.25  Aligned_cols=60  Identities=8%  Similarity=0.227  Sum_probs=44.9

Q ss_pred             CCCeEEEEEe-cCCChhhh-hhhHhHHHHHHHh-CC-CeE-EEEEECCCCh--HHHHHHcCCccccc
Q 031285          102 LDESVIIVWM-ASWCRKCI-YLKPKLEKLAADY-HP-RLR-FYNVDVNAVP--HKLVARAGVMVSLM  161 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~-~~~p~l~~l~~~~-~~-~v~-~~~vd~d~~~--~~la~~~~I~~~Pt  161 (162)
                      .++++|+.|| +.||+.|- ...+.|.+..+++ +. ++. ++.|..|...  ..+++++++..+|.
T Consensus        42 ~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~V~gvS~D~~~~~~~~~~~~~~~~f~l  108 (182)
T 1xiy_A           42 NNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIKKIKY  108 (182)
T ss_dssp             TTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSCHHHHHHHHHHTTCCSSEE
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCceE
Confidence            5777777776 88999999 8999999999888 54 574 8888887642  22677777654553

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.01  E-value=0.0012  Score=47.62  Aligned_cols=44  Identities=16%  Similarity=0.395  Sum_probs=37.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d  144 (162)
                      ..++++||.|+.-.|++|+.+.|.+.++.+++.+++++..+.+.
T Consensus        19 ~~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~   62 (184)
T 4dvc_A           19 ASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVS   62 (184)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECS
T ss_pred             CCCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecC
Confidence            45788999999999999999999999999999667777766553

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=96.96  E-value=0.003  Score=48.58  Aligned_cols=68  Identities=18%  Similarity=0.215  Sum_probs=55.6

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .++.+++.+++++.+    ..+.+++|-|+++||   ....+.|.++++.+.+++.|+.+.   +.+ ++++|++.. |+
T Consensus         7 ~v~~l~s~~~~~~~l----~~~~v~vvgff~~~~---~~~~~~f~~~A~~lr~~~~F~~~~---~~~-v~~~~~~~~-p~   74 (252)
T 2h8l_A            7 ASVPLRTEEEFKKFI----SDKDASIVGFFDDSF---SEAHSEFLKAASNLRDNYRFAHTN---VES-LVNEYDDNG-EG   74 (252)
T ss_dssp             CEEECCSHHHHHHHH----TSSSCEEEEEESCTT---SHHHHHHHHHHHHTTTTSCEEEEC---CHH-HHHHHCSSS-EE
T ss_pred             CceeecCHHHHHHHh----hcCCeEEEEEECCCC---ChHHHHHHHHHHhcccCcEEEEEC---hHH-HHHHhCCCC-Cc
Confidence            467788889999998    778888999999984   456788999999997889998773   456 899999986 65

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=96.94  E-value=0.0027  Score=51.61  Aligned_cols=69  Identities=16%  Similarity=0.256  Sum_probs=55.6

Q ss_pred             CceecCCHHHHHHHHHHHhc-CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQ-LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSL  160 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~-~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~P  160 (162)
                      .+..+++.+++++.+    . ..+.++|.|+++||++   ..+.|.+++..+.+++.|+.++   +.+ ++++|+|.. |
T Consensus       126 ~v~~i~~~~~~~~~~----~~~~~~~vv~ff~~~~~~---~~~~f~~~A~~~~~~~~F~~~~---~~~-~~~~~~v~~-p  193 (367)
T 3us3_A          126 PVELIEGERELQAFE----NIEDEIKLIGYFKNKDSE---HYKAFKEAAEEFHPYIPFFATF---DSK-VAKKLTLKL-N  193 (367)
T ss_dssp             SEEECCSHHHHHHHH----HCCSSCEEEEECSCTTCH---HHHHHHHHHHHHTTTSCEEEEC---CHH-HHHHHTCCT-T
T ss_pred             CcEEcCCHHHHHHHh----ccCCCcEEEEEECCCCch---HHHHHHHHHHhhcCCcEEEEEC---CHH-HHHHcCCCC-C
Confidence            366777888999998    5 5788999999999764   5678999999997789998874   446 899999985 7


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      +|
T Consensus       194 ~i  195 (367)
T 3us3_A          194 EI  195 (367)
T ss_dssp             CE
T ss_pred             eE
Confidence            64

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=96.86  E-value=0.001  Score=50.66  Aligned_cols=68  Identities=15%  Similarity=0.151  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC--hHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV--PHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--~~~la~~~~I~~~Pti  162 (162)
                      +.+++.+.+... ......++.|+.+||+.|++....|++.      ++.+-.+|++..  .+++.+.+|...+|.|
T Consensus       154 ~~~~il~~l~~~-~i~~~~i~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~  223 (241)
T 1nm3_A          154 DADTMLKYLAPQ-HQVQESISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQV  223 (241)
T ss_dssp             SHHHHHHHHCTT-SCCCCCEEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCEE
T ss_pred             CHHHHHHHhhhh-ccccceEEEEECCCChHHHHHHHHHHHc------CCceEEEECCCchHHHHHHHHhCCCCcCEE
Confidence            344455555211 1134557778999999999988777643      234445666543  2347888999999974

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=96.84  E-value=0.0016  Score=52.50  Aligned_cols=53  Identities=4%  Similarity=0.134  Sum_probs=38.2

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--HHHHHcCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGV  156 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~la~~~~I  156 (162)
                      ..||+||++|| +.||+.|..+++.|.+   +...++.++.|+.|....  .+++++++
T Consensus        22 ~~Gk~vvl~F~p~~~tp~C~~e~~~~~~---~~~~~~~v~gis~D~~~~~~~f~~~~~l   77 (322)
T 4eo3_A           22 LYGKYTILFFFPKAGTSGSTREAVEFSR---ENFEKAQVVGISRDSVEALKRFKEKNDL   77 (322)
T ss_dssp             TTTSEEEEEECSSTTSHHHHHHHHHHHH---SCCTTEEEEEEESCCHHHHHHHHHHHTC
T ss_pred             hCCCeEEEEEECCCCCCCCHHHHHHHHH---HhhCCCEEEEEeCCCHHHHHHHHHhhCC
Confidence            46899999999 6799999998877754   333578999998864321  14555555

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=96.81  E-value=0.0024  Score=43.22  Aligned_cols=44  Identities=11%  Similarity=0.061  Sum_probs=30.2

Q ss_pred             CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285          113 SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus       113 ~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      |||+.|++....|++    +  ++.+..+|++..++   .+.+..|...+|.|
T Consensus        31 p~Cp~C~~ak~~L~~----~--gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i   77 (109)
T 3ipz_A           31 PMCGFSNTVVQILKN----L--NVPFEDVNILENEMLRQGLKEYSNWPTFPQL   77 (109)
T ss_dssp             BSSHHHHHHHHHHHH----T--TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE
T ss_pred             CCChhHHHHHHHHHH----c--CCCcEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence            599999998766654    3  45566778877654   14444588888864

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=96.77  E-value=0.003  Score=40.56  Aligned_cols=50  Identities=16%  Similarity=0.163  Sum_probs=35.0

Q ss_pred             EEEEecC----CChhhhhhhHhHHHHHHHhCCCeEEEEEECC-----CChH---HHHHHcCCc-----ccccC
Q 031285          107 IIVWMAS----WCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-----AVPH---KLVARAGVM-----VSLMI  162 (162)
Q Consensus       107 lV~F~a~----WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----~~~~---~la~~~~I~-----~~Pti  162 (162)
                      |+.|+.+    ||+.|++....|++    +  ++.+-.+|++     ..++   ++.+..|..     .+|.|
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~----~--gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v   68 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTV----K--KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQV   68 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHH----T--TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEE
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHH----c--CCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEE
Confidence            4568899    99999988766654    3  3556667777     5533   266778888     78864

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=96.69  E-value=0.0053  Score=47.21  Aligned_cols=68  Identities=13%  Similarity=0.029  Sum_probs=55.5

Q ss_pred             CceecCCHHHHHHHHHHHhcC-CCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQL-DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSL  160 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~-~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~P  160 (162)
                      .++.+++.+++++++    +. +.+++|-|+++||   ....+.|.++++.+.+++.|+..   .+.+ ++++|++.. |
T Consensus         7 ~v~~l~s~~~~~~~~----~~~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~~~~F~~t---~~~~-v~~~~~v~~-p   74 (250)
T 3ec3_A            7 PSKEILTLKQVQEFL----KDGDDVVILGVFQGVG---DPGYLQYQDAANTLREDYKFHHT---FSTE-IAKFLKVSL-G   74 (250)
T ss_dssp             SSEECCCHHHHHHHH----HHCSSCEEEEECSCTT---CHHHHHHHHHHHHHTTTCCEEEE---CCHH-HHHHHTCCS-S
T ss_pred             CceecCCHHHHHHHH----hcCCCeEEEEEEcCCC---chHHHHHHHHHHhhhcCcEEEEE---CcHH-HHHHcCCCC-C
Confidence            467788989999988    55 7889999999985   46778899999999888999876   3456 899999876 6


Q ss_pred             c
Q 031285          161 M  161 (162)
Q Consensus       161 t  161 (162)
                      +
T Consensus        75 ~   75 (250)
T 3ec3_A           75 K   75 (250)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=96.64  E-value=0.0064  Score=49.51  Aligned_cols=70  Identities=7%  Similarity=0.059  Sum_probs=53.6

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCCh-hhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCc--ccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCR-KCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM--VSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~-~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~--~~Pti  162 (162)
                      +.+++.++.    ..+.+++|.|+.+||. .|..+...+.+++.++.+++.|+.+|.+.... +++.||+.  .+|.|
T Consensus       225 t~~~~~~~~----~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~id~~~~~~-~~~~~gl~~~~~P~i  297 (382)
T 2r2j_A          225 TFENGEELT----EEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRH-PLLHIQKTPADCPVI  297 (382)
T ss_dssp             CHHHHHHHH----TTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEEEETTTTHH-HHHHTTCCGGGCSEE
T ss_pred             ChhhHHHHh----cCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCCeeEEEEEchHHhHH-HHHHcCCCccCCCEE
Confidence            445666666    6789999999999984 34555566666666776789999999999988 89999997  56753

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=96.60  E-value=0.0028  Score=43.14  Aligned_cols=53  Identities=15%  Similarity=0.177  Sum_probs=34.9

Q ss_pred             CCeEEEEEec-----CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHH---HHHHcCCcccccC
Q 031285          103 DESVIIVWMA-----SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHK---LVARAGVMVSLMI  162 (162)
Q Consensus       103 ~~~vlV~F~a-----~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~---la~~~~I~~~Pti  162 (162)
                      ..+|+| |..     +||+.|++....|++    +  ++.+..+|++.+++.   +.+..|...+|.|
T Consensus        15 ~~~Vvl-f~kg~~~~~~Cp~C~~ak~~L~~----~--gi~y~~~di~~d~~~~~~l~~~~g~~tvP~i   75 (111)
T 3zyw_A           15 AAPCML-FMKGTPQEPRCGFSKQMVEILHK----H--NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQL   75 (111)
T ss_dssp             SSSEEE-EESBCSSSBSSHHHHHHHHHHHH----T--TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred             cCCEEE-EEecCCCCCcchhHHHHHHHHHH----c--CCCeEEEECcCCHHHHHHHHHHHCCCCCCEE
Confidence            334444 667     999999998766653    3  455667788877651   3334477888864

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=96.58  E-value=0.0058  Score=42.21  Aligned_cols=64  Identities=13%  Similarity=0.071  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhcCCCeEEEEEec----CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWMA----SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a----~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      .+++.+    +.++ |+|+--.    |||+.|++....|++..-.+   -.+..+|++..++   .+.+..|...+|.|
T Consensus         8 ~v~~~i----~~~~-Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~---~~~~~~dv~~~~~~~~~l~~~sg~~tvP~v   78 (121)
T 3gx8_A            8 AIEDAI----ESAP-VVLFMKGTPEFPKCGFSRATIGLLGNQGVDP---AKFAAYNVLEDPELREGIKEFSEWPTIPQL   78 (121)
T ss_dssp             HHHHHH----HSCS-EEEEESBCSSSBCTTHHHHHHHHHHHHTBCG---GGEEEEECTTCHHHHHHHHHHHTCCSSCEE
T ss_pred             HHHHHh----ccCC-EEEEEeccCCCCCCccHHHHHHHHHHcCCCc---ceEEEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence            345555    4444 4443333    59999999987776543211   1266788877754   14445578888864

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=96.48  E-value=0.0037  Score=45.99  Aligned_cols=55  Identities=9%  Similarity=0.015  Sum_probs=43.2

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeE-EEEEECCCCh--HHHHHHcCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLR-FYNVDVNAVP--HKLVARAGV  156 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~-~~~vd~d~~~--~~la~~~~I  156 (162)
                      .++.+|+.|| +.||+.|....+.|.+..++++ .++. ++.|.+|...  ..+++++++
T Consensus        41 ~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~~~~~  100 (171)
T 2xhf_A           41 RGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDP  100 (171)
T ss_dssp             TTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHHCT
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCC
Confidence            4778888888 7899999999999999998883 4675 8889887653  226677766

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=96.44  E-value=0.0034  Score=40.93  Aligned_cols=50  Identities=18%  Similarity=0.182  Sum_probs=34.5

Q ss_pred             EEEEecCCChhh------hhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcC--CcccccC
Q 031285          107 IIVWMASWCRKC------IYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAG--VMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C------~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~--I~~~Pti  162 (162)
                      |+.|+.+||+.|      ++....|+    ++  ++.+..+|++.+++   .+.+.+|  ...+|.|
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~----~~--~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~i   64 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILD----GK--RIQYQLVDISQDNALRDEMRTLAGNPKATPPQI   64 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHH----HT--TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHH----HC--CCceEEEECCCCHHHHHHHHHHhCCCCCCCCEE
Confidence            566889999999      56554443    33  56777889887753   2555677  6788864

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=96.42  E-value=0.0027  Score=45.47  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEE
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD  142 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd  142 (162)
                      ..++.+|+.|+.++|+.|+++.+.++++     ++++++..+
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~~v~v~~~~   48 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEHEFEKM-----TDVTVYSFM   48 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHHHHTTC-----CSEEEEEEE
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHHhhc-----CceEEEEEE
Confidence            4578899999999999999999987654     567776654

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.35  E-value=0.0055  Score=41.53  Aligned_cols=51  Identities=22%  Similarity=0.232  Sum_probs=34.1

Q ss_pred             EEEEEecCCChhhh------hhhHhHHHHHHHhCCCeEEEEEECCCChHH---HHHHc--------CCcccccC
Q 031285          106 VIIVWMASWCRKCI------YLKPKLEKLAADYHPRLRFYNVDVNAVPHK---LVARA--------GVMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~------~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~---la~~~--------~I~~~Pti  162 (162)
                      .|+.|+.+||+.|+      +....|    +++  ++.+..+|++.+++.   +.+.+        |...+|.|
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L----~~~--gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~v   76 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFL----EAN--KIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQI   76 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHH----HHT--TCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEE
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHH----HHc--CCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEE
Confidence            36678899999999      444333    343  577888999887641   34444        66677754

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=96.18  E-value=0.012  Score=46.35  Aligned_cols=56  Identities=13%  Similarity=0.072  Sum_probs=40.6

Q ss_pred             eEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh-----------------HHHHHHcCCccc--ccC
Q 031285          105 SVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP-----------------HKLVARAGVMVS--LMI  162 (162)
Q Consensus       105 ~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----------------~~la~~~~I~~~--Pti  162 (162)
                      ..|..|+.++|+.|......|++++.++  ++....++++...                 ..+++++|.+.+  |.|
T Consensus        44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~~--~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI  118 (270)
T 2axo_A           44 GVVELFTSQGCASCPPADEALRKMIQKG--DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQA  118 (270)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHHT--SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEE
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHhhccC--CeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEE
Confidence            5778899999999999999999998875  3433334433221                 126788999988  864

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=96.09  E-value=0.011  Score=44.15  Aligned_cols=46  Identities=15%  Similarity=0.304  Sum_probs=37.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhH-HHHHHHh--CCCeEEEEEECCCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKL-EKLAADY--HPRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l-~~l~~~~--~~~v~~~~vd~d~~  146 (162)
                      ...+++||.|+...|++|+.+.+.+ ..+.++|  .++++|+..++.-.
T Consensus        27 ~~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~   75 (202)
T 3gha_A           27 DDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFH   75 (202)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCS
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCcc
Confidence            4578899999999999999999886 6777788  35799998887543

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=95.57  E-value=0.028  Score=42.78  Aligned_cols=45  Identities=11%  Similarity=0.279  Sum_probs=36.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHh-HHHHHHHh--CCCeEEEEEECCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPK-LEKLAADY--HPRLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~-l~~l~~~~--~~~v~~~~vd~d~  145 (162)
                      ...+++|+.|+...|++|+.+.+. +.++.++|  .++++|+..+..-
T Consensus        37 ~~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p~   84 (226)
T 3f4s_A           37 PKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPL   84 (226)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECCC
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCCC
Confidence            456788999999999999999986 57888888  4578888777643

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=95.53  E-value=0.029  Score=41.25  Aligned_cols=42  Identities=14%  Similarity=0.068  Sum_probs=35.3

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEEC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDV  143 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~  143 (162)
                      ...++||.|.-..|++|+++.+.+.++.+++ .++++++.-+.
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~   55 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQ   55 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEc
Confidence            4677889999999999999999998877776 66888887765

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=95.41  E-value=0.045  Score=38.82  Aligned_cols=70  Identities=9%  Similarity=0.084  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecC-CChhhhhhhHhHHHHHHHhCCCeEEEEEEC--CCChHHHHHHcCCcc--cccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMAS-WCRKCIYLKPKLEKLAADYHPRLRFYNVDV--NAVPHKLVARAGVMV--SLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~-WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~--d~~~~~la~~~~I~~--~Pti  162 (162)
                      +.++...+.    ..+.++.+.++.. --..=....+.++++++++.+++.|+.+|.  +.... +++.||+..  +|++
T Consensus        20 t~en~~~~~----~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~-~l~~fGl~~~~~P~v   94 (147)
T 3bj5_A           20 TEQTAPKIF----GGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQR-ILEFFGLKKEECPAV   94 (147)
T ss_dssp             CTTTHHHHH----SSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHH-HHHHTTCCGGGCSEE
T ss_pred             ccccHHHHh----cCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHH-HHHHcCCCcccCCEE
Confidence            445566666    6666665554443 333345678999999999988999999999  55555 889999986  7864

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=94.92  E-value=0.032  Score=38.76  Aligned_cols=55  Identities=20%  Similarity=0.194  Sum_probs=35.9

Q ss_pred             EEEEEecCCChhhhhhh--HhHHHHHHHhCCCeEEEEEECCCChH---HHHHHc--------CCcccccC
Q 031285          106 VIIVWMASWCRKCIYLK--PKLEKLAADYHPRLRFYNVDVNAVPH---KLVARA--------GVMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~~~~--p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~--------~I~~~Pti  162 (162)
                      ||+.|.+++||.|+...  -...++.+.  .+|.|-.+|++.+++   ++.++.        |...+|.|
T Consensus         1 ~V~vYtt~~c~~c~~kk~c~~aK~lL~~--kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQI   68 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKKQQDVLGFLEA--NKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQI   68 (121)
T ss_dssp             CEEEEECTTCSCHHHHHHHHHHHHHHHH--TTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEE
T ss_pred             CEEEEecCCCCCccchHHHHHHHHHHHH--CCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEE
Confidence            46678899999994211  122344444  478899999987754   256676        67777754

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=94.74  E-value=0.062  Score=38.87  Aligned_cols=44  Identities=20%  Similarity=0.421  Sum_probs=34.4

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhH-HHHHHHhC--CCeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKL-EKLAADYH--PRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l-~~l~~~~~--~~v~~~~vd~d  144 (162)
                      ..+++.|+.|+..-|+.|+.+.+.+ ++|.++|.  ++++++.....
T Consensus         9 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p   55 (186)
T 3bci_A            9 KNGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLA   55 (186)
T ss_dssp             --CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECC
T ss_pred             CCCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEecC
Confidence            4567789999999999999999998 57888883  46777776653

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=94.24  E-value=0.11  Score=38.75  Aligned_cols=44  Identities=7%  Similarity=0.056  Sum_probs=35.4

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHH-Hh--CCCeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAA-DY--HPRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~-~~--~~~v~~~~vd~d  144 (162)
                      ...+++||.|.-.-|+.|+++.+.+....+ +|  .++++++..+.-
T Consensus        13 ~~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~p   59 (205)
T 3gmf_A           13 PAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFV   59 (205)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEECC
T ss_pred             CCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeCC
Confidence            457788999999999999999988865554 77  567888877764

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=94.15  E-value=0.054  Score=42.73  Aligned_cols=39  Identities=15%  Similarity=0.276  Sum_probs=30.6

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEE
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD  142 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd  142 (162)
                      +++.+|+.|+-+.||.|+++.+.+++..++  ..|+++-+-
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~~~l~~~l~~--~~Vr~i~~P  184 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKELTKLRDHLKE--NTVRMVVVG  184 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHHHTHHHHHHH--CEEEEEECC
T ss_pred             CCCeEEEEEECcCChhHHHHHHHHHHHhhC--CcEEEEEee
Confidence            477899999999999999999999976655  345555443

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=93.88  E-value=0.035  Score=45.55  Aligned_cols=55  Identities=16%  Similarity=0.102  Sum_probs=31.0

Q ss_pred             EEEEecCCChhhhhhhH-hHHHHHHHhCCCeEEEEEECCC-Ch---HHHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKP-KLEKLAADYHPRLRFYNVDVNA-VP---HKLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p-~l~~l~~~~~~~v~~~~vd~d~-~~---~~la~~~~I~~~Pti  162 (162)
                      |+.|..+||+.|++... .|+++.-.| ..+.++.+|-.. .+   +.+.+..|...+|.|
T Consensus       263 VvVYsk~~CPyC~~Ak~~LL~~~gV~y-~eidVlEld~~~~~~e~~~~L~~~tG~~TVPqV  322 (362)
T 2jad_A          263 IFVASKTYCPYSHAALNTLFEKLKVPR-SKVLVLQLNDMKEGADIQAALYEINGQRTVPNI  322 (362)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTTCCCT-TTEEEEEGGGSTTHHHHHHHHHHHHCCCSSCEE
T ss_pred             EEEEEcCCCcchHHHHHHHHHHcCCCc-ceEEEEEeccccCCHHHHHHHHHHHCCCCcCEE
Confidence            44588999999998754 344332222 233443333212 21   225566799999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.45  E-value=0.024  Score=48.71  Aligned_cols=61  Identities=10%  Similarity=0.261  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC---hH---HHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV---PH---KLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~---~la~~~~I~~~Pti  162 (162)
                      +.+++.+    +..+  ++.|..+||+.|+.....|++..      +.+-.+|++..   .+   .+.+..+...+|.|
T Consensus         9 ~~v~~~i----~~~~--v~vy~~~~Cp~C~~~k~~L~~~~------i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v   75 (598)
T 2x8g_A            9 QWLRKTV----DSAA--VILFSKTTCPYCKKVKDVLAEAK------IKHATIELDQLSNGSAIQKCLASFSKIETVPQM   75 (598)
T ss_dssp             HHHHHHH----HHCS--EEEEECTTCHHHHHHHHHHHHTT------CCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEE
T ss_pred             HHHHHHh----ccCC--EEEEECCCChhHHHHHHHHHHCC------CCcEEEEcccCcchHHHHHHHHHHhCCceeCEE
Confidence            5566776    3333  55689999999999887776432      23334555532   22   13445678888864

>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein, thioredoxin fold, transferase; NMR {Synechococcus elongatus} SCOP: c.47.1.15 PDB: 1t4z_A

Probab=92.19  E-value=0.6  Score=31.43  Aligned_cols=56  Identities=11%  Similarity=0.170  Sum_probs=47.1

Q ss_pred             EEEEEecCCChhhhhhhHhHHHHHHHh--CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          106 VIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ....|.|.--+..+.....+.++.+++  ++.+.+--||+.++++ +|+.++|-.+||+
T Consensus        13 L~lLyvag~tp~S~~ai~nL~~i~e~~l~~~~y~LeVIDv~eqPe-LAE~~~IvATPTL   70 (105)
T 1t4y_A           13 LLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQ-LVEYYRLVVTPAL   70 (105)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHHHHCCSSCEEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             hheeeEeCCCccHHHHHHHHHHHHHHhccCCceEEEEeecccCHH-HHhHcCeeeccHh
Confidence            344567888888888888888888877  3468999999999999 9999999999984

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=92.11  E-value=0.11  Score=35.85  Aligned_cols=36  Identities=17%  Similarity=0.519  Sum_probs=29.7

Q ss_pred             CeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC
Q 031285          104 ESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV  143 (162)
Q Consensus       104 ~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~  143 (162)
                      |.++|.|.-|.|+-|......+    +++++++.+..||+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l----~~ledeY~ilrVNI   37 (124)
T 2g2q_A            2 KNVLIIFGKPYCSICENVSDAV----EELKSEYDILHVDI   37 (124)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHH----HTTTTTEEEEEEEC
T ss_pred             CceEEEeCCCccHHHHHHHHHH----HHhhccccEEEEEe
Confidence            5689999999999999887666    44456679999997

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=91.87  E-value=0.25  Score=37.58  Aligned_cols=59  Identities=14%  Similarity=0.210  Sum_probs=41.6

Q ss_pred             CCeEEEEEecCCChh---h-hhhhHhHHHHHHHhCCC---eEEEEEECCCChHHHHHHcCC----cccccC
Q 031285          103 DESVIIVWMASWCRK---C-IYLKPKLEKLAADYHPR---LRFYNVDVNAVPHKLVARAGV----MVSLMI  162 (162)
Q Consensus       103 ~~~vlV~F~a~WC~~---C-~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~~~la~~~~I----~~~Pti  162 (162)
                      +.+++|.|+..-+..   + ......+.+++++|.++   +.|+.+|.+.... +++.||+    ..+|.|
T Consensus       129 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~-~~~~fgl~~~~~~~P~v  198 (252)
T 2h8l_A          129 GKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSH-ELSDFGLESTAGEIPVV  198 (252)
T ss_dssp             SSSEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHH-HHGGGTCCCCSCSSCEE
T ss_pred             CCCeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHH-HHHHcCCCCccCCCCEE
Confidence            344556666433221   1 14677788899999655   9999999999888 8999999    357754

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=91.78  E-value=0.13  Score=35.15  Aligned_cols=44  Identities=9%  Similarity=0.071  Sum_probs=27.4

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh---HH---HHHHcCC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HK---LVARAGV  156 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~---la~~~~I  156 (162)
                      +..|+.+||+.|++....|++    .  ++.+-.+|+..++   ++   +.+++|+
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~----~--gi~y~~~di~~~~~~~~~l~~~~~~~g~   56 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLED----H--GIDYTFHDYKKEGLDAETLDRFLKTVPW   56 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----H--TCCEEEEEHHHHCCCHHHHHHHHHHSCG
T ss_pred             EEEEECCCChHHHHHHHHHHH----c--CCcEEEEeeeCCCCCHHHHHHHHHHcCh
Confidence            556789999999988766554    3  3444456664332   21   4566664

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=91.67  E-value=0.39  Score=32.96  Aligned_cols=64  Identities=14%  Similarity=0.141  Sum_probs=38.3

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEe----cCCChhhhhhhHhHHHHHHHhCCCe-EEEEEECCCChH---HHHHHcCCccc
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWM----ASWCRKCIYLKPKLEKLAADYHPRL-RFYNVDVNAVPH---KLVARAGVMVS  159 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~----a~WC~~C~~~~p~l~~l~~~~~~~v-~~~~vd~d~~~~---~la~~~~I~~~  159 (162)
                      +.+.+++.+    ++++ |+|+.-    +|.|+.|++....|.    ++  ++ .+..+|++..++   .+.+.-|-..+
T Consensus         9 ~~e~i~~~i----~~~~-VvvF~Kgt~~~P~C~fc~~ak~lL~----~~--gv~~~~~~~v~~~~~~r~~l~~~sg~~Tv   77 (118)
T 2wul_A            9 SAEQLDALV----KKDK-VVVFLKGTPEQPQCGFSNAVVQILR----LH--GVRDYAAYNVLDDPELRQGIKDYSNWPTI   77 (118)
T ss_dssp             CHHHHHHHH----HHSS-EEEEESBCSSSBSSHHHHHHHHHHH----HT--TCCSCEEEETTSCHHHHHHHHHHHTCCSS
T ss_pred             hHHHHHHHH----hcCC-EEEEEcCCCCCCCCHHHHHHHHHHH----Hh--CCcCeEeecccCCHHHHHHHHHhccCCCC
Confidence            345677887    4454 444222    368999998875554    33  23 366678887765   14445566667


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      |.|
T Consensus        78 PqI   80 (118)
T 2wul_A           78 PQV   80 (118)
T ss_dssp             CEE
T ss_pred             CeE
Confidence            643

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=91.05  E-value=0.29  Score=33.84  Aligned_cols=34  Identities=15%  Similarity=0.372  Sum_probs=24.3

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      ++.|+.+||+.|++....|++    +  ++.+-.+|++..
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~----~--gi~y~~~di~~~   36 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEE----H--EIPFVERNIFSE   36 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH----T--TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHHH----c--CCceEEEEccCC
Confidence            556889999999998766653    3  455556777654

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=89.08  E-value=0.42  Score=32.57  Aligned_cols=34  Identities=12%  Similarity=0.339  Sum_probs=24.0

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      +..|+.++|+.|++....|+    ++  ++.+-.+|+.++
T Consensus         2 i~iY~~~~C~~c~ka~~~L~----~~--gi~~~~~di~~~   35 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLN----RH--DVVFQEHNIMTS   35 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHH----HT--TCCEEEEETTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHH----Hc--CCCeEEEecccC
Confidence            45678999999999875554    33  456666777654

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=88.59  E-value=0.81  Score=33.54  Aligned_cols=38  Identities=24%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             eEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEE
Q 031285          105 SVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD  142 (162)
Q Consensus       105 ~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd  142 (162)
                      ..|..|+-.-|+.|....|.++++.++|++++.+...-
T Consensus         3 ~~I~~~~D~~CP~cy~~~~~l~~l~~~~~~~v~v~~~p   40 (208)
T 3kzq_A            3 IKLYYVHDPMCSWCWGYKPTIEKLKQQLPGVIQFEYVV   40 (208)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHSCTTSEEEEEE
T ss_pred             eEEEEEECCCCchhhhhhHHHHHHHHhCCCCceEEEEe
Confidence            35777889999999999999999999996566665444

>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A

Probab=87.43  E-value=0.28  Score=33.13  Aligned_cols=58  Identities=12%  Similarity=0.173  Sum_probs=47.1

Q ss_pred             CeEEEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          104 ESVIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       104 ~~vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ..++..|-+---+..+.....+.++.+++ ++.+.+--||+.++|+ +|+.++|-.+||+
T Consensus         7 ~~~L~LyVaG~tp~S~~ai~nL~~i~e~~l~~~y~LeVIDv~~~Pe-lAe~~~IvAtPTL   65 (105)
T 1wwj_A            7 TYVLKLYVAGNTPNSVRALKMLKNILEQEFQGVYALKVIDVLKNPQ-LAEEDKILATPTL   65 (105)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCS-CCTTCEEECHHHH
T ss_pred             ceEEEEEEeCCCchHHHHHHHHHHHHHHhcCCCeEEEEEEcccCHh-HHhHCCeEEechh
Confidence            34555555657778888888888887776 6679999999999999 9999999999974

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=86.63  E-value=4.6  Score=30.02  Aligned_cols=64  Identities=16%  Similarity=0.129  Sum_probs=43.1

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..++...+..  +..+.+.+.|...-|.       ...+++.++.  +.+.+..++ +.+.+ ++++|||+.+|++
T Consensus       144 ~~~~l~~~~~~--~~~~~~al~f~~~~~~-------~~~~~~~d~~~~~~i~v~~~~-~~~~~-l~~~f~v~~~Psl  209 (244)
T 3q6o_A          144 XLEEIDGFFAR--NNEEYLALIFEXGGSY-------LAREVALDLSQHKGVAVRRVL-NTEAN-VVRKFGVTDFPSC  209 (244)
T ss_dssp             CHHHHHTHHHH--CCCSEEEEEEECTTCC-------HHHHHHHHTTTCTTEEEEEEE-TTCHH-HHHHHTCCCSSEE
T ss_pred             cHHHHHHHhhc--CCCceEEEEEEECCcc-------hHHHHHHHhccCCceEEEEEe-CchHH-HHHHcCCCCCCeE
Confidence            56778888764  6677777878766432       3344555553  456765554 44556 9999999999985

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=86.42  E-value=1  Score=30.64  Aligned_cols=34  Identities=18%  Similarity=0.415  Sum_probs=23.6

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      +..|+.++|+.|++....|+    +.  ++.+-.+|+.++
T Consensus         5 i~iY~~~~C~~c~ka~~~L~----~~--gi~~~~~di~~~   38 (120)
T 3fz4_A            5 LTFYEYPKCSTCRRAKAELD----DL--AWDYDAIDIKKN   38 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHH----HH--TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHH----Hc--CCceEEEEeccC
Confidence            45678999999999875554    43  455566777554

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=86.23  E-value=1.3  Score=33.50  Aligned_cols=55  Identities=16%  Similarity=0.327  Sum_probs=42.3

Q ss_pred             CCCeEEEEEec-CCC---hhh-hhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcc
Q 031285          102 LDESVIIVWMA-SWC---RKC-IYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV  158 (162)
Q Consensus       102 ~~~~vlV~F~a-~WC---~~C-~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~  158 (162)
                      .++++++.|+. +++   ..+ ......+.+++++|. ++.|+.+|.+.... .++.||+..
T Consensus       131 ~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k-ki~F~~~d~~~~~~-~l~~fgl~~  190 (250)
T 3ec3_A          131 SKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP-EYTFAIADEEDYAT-EVKDLGLSE  190 (250)
T ss_dssp             CSSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT-TSEEEEEETTTTHH-HHHHTTCSS
T ss_pred             ccCccEEEEEecccccccchhHHHHHHHHHHHHHhhc-ceeEEEEcHHHHHH-HHHHcCCCc
Confidence            36677776664 343   333 457888999999997 99999999998887 788999974

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=85.88  E-value=0.55  Score=31.56  Aligned_cols=34  Identities=15%  Similarity=0.215  Sum_probs=23.3

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      |+.|+.+||+.|++....|++    .  ++.+-.+|+.++
T Consensus         2 i~iY~~~~C~~C~kak~~L~~----~--gi~~~~~di~~~   35 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDE----H--KVAYDFHDYKAV   35 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----T--TCCEEEEEHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHH----C--CCceEEEeecCC
Confidence            456789999999988755553    3  455556676543

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=83.40  E-value=2.7  Score=30.50  Aligned_cols=38  Identities=18%  Similarity=0.333  Sum_probs=29.0

Q ss_pred             eEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEE
Q 031285          105 SVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD  142 (162)
Q Consensus       105 ~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd  142 (162)
                      ..|..|+-..|+.|....+.++++.+.++.++.+....
T Consensus         8 ~~I~~f~D~~CP~C~~~~~~~~~l~~~~~~~v~v~~~~   45 (216)
T 2in3_A            8 PVLWYIADPMCSWCWGFAPVIENIRQEYSAFLTVKIMP   45 (216)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             eeEEEEECCCCchhhcchHHHHHHHhcCCCCeEEEEee
Confidence            45777888999999999999999988544456665544

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=83.39  E-value=0.75  Score=31.35  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=23.5

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      +..|+.++|+.|++....|+    ++  ++.+-.+|+.++
T Consensus         6 i~iY~~p~C~~c~ka~~~L~----~~--gi~~~~~di~~~   39 (120)
T 3gkx_A            6 TLFLQYPACSTCQKAKKWLI----EN--NIEYTNRLIVDD   39 (120)
T ss_dssp             CEEEECTTCHHHHHHHHHHH----HT--TCCCEEEETTTT
T ss_pred             EEEEECCCChHHHHHHHHHH----Hc--CCceEEEecccC
Confidence            55678999999999875554    33  455555777554

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=81.97  E-value=0.9  Score=30.99  Aligned_cols=34  Identities=12%  Similarity=0.051  Sum_probs=23.7

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      +..|+.++|+.|++....|+    +.  ++.+-.+|+.+.
T Consensus         7 i~iY~~p~C~~c~ka~~~L~----~~--gi~~~~~di~~~   40 (121)
T 3rdw_A            7 VTIYHNPRCSKSRETLALVE----QQ--GITPQVVLYLET   40 (121)
T ss_dssp             CEEECCTTCHHHHHHHHHHH----TT--TCCCEEECTTTS
T ss_pred             EEEEECCCCHHHHHHHHHHH----Hc--CCCcEEEeeccC
Confidence            55678999999999875554    33  455556777654

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=81.24  E-value=1  Score=35.32  Aligned_cols=57  Identities=9%  Similarity=0.243  Sum_probs=41.8

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      .+..+.+.+++++.+.   ..++++++.|. .    .....+.|.+++.++.+++.|+.++-.+.
T Consensus       144 ~v~~i~~~~~l~~~l~---~~~~~~vi~fs-~----~~~~~~~f~~~A~~~~~~~~F~~v~~~~~  200 (298)
T 3ed3_A          144 YVKKFVRIDTLGSLLR---KSPKLSVVLFS-K----QDKISPVYKSIALDWLGKFDFYSISNKKL  200 (298)
T ss_dssp             CEEECSCGGGHHHHHT---SCSSEEEEEEE-S----SSSCCHHHHHHHHHTBTTEEEEEEEGGGC
T ss_pred             ccEEcCCHHHHHHHHh---cCCceEEEEEc-C----CCcchHHHHHHHHHhhcCcEEEEEcchHh
Confidence            4666778888998882   33577777763 2    23456889999999988999999986543

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=80.02  E-value=0.87  Score=31.99  Aligned_cols=34  Identities=3%  Similarity=-0.174  Sum_probs=23.0

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      +..|+.++|+.|++....|+    +.  ++.+-.+|+...
T Consensus         4 itiY~~p~C~~crkak~~L~----~~--gi~~~~idi~~~   37 (141)
T 1s3c_A            4 ITIYHNPASGTSRNTLEMIR----NS--GTEPTIILYLEN   37 (141)
T ss_dssp             CEEECCTTCHHHHHHHHHHH----HT--TCCCEEECTTTS
T ss_pred             EEEEECCCChHHHHHHHHHH----Hc--CCCEEEEECCCC
Confidence            44678999999998875554    33  455555777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	1e-05
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	4e-05
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	2e-04
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	3e-04
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	4e-04
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	5e-04
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	6e-04
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	6e-04
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	7e-04

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 80  SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFY 139
           S  L  + +  Q D+ I   +  D  V+I +   W   C+ +   L  +A         Y
Sbjct: 1   SYMLPHLHNGWQVDQAILSEE--DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIY 58

Query: 140 NVDVNAVPH 148
            VD+  VP 
Sbjct: 59  LVDITEVPD 67

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 4e-05
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 9/69 (13%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMA-------SWCRKCIYLKPKLEKLAADYHPRLRF 138
           +    +F R + +     +++   +         SWC  C+  +P + +          F
Sbjct: 6   VSGFEEFHRAVEQHN--GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVF 63

Query: 139 YNVDVNAVP 147
               V   P
Sbjct: 64  IYCQVGEKP 72

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 83  LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVD 142
           +  + +  QF   I + Q+   ++++       R C  L   LE LAA+Y          
Sbjct: 101 VYELETGEQFLETIEKEQK-VTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCK 156

Query: 143 VNAVPHKLVARAGVMV 158
           + A       R    V
Sbjct: 157 IRASNTGAGDRFSSDV 172

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 6/72 (8%), Positives = 20/72 (27%), Gaps = 3/72 (4%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
             S  D  I      D  +++        +       + +L  ++ P+  +     +   
Sbjct: 17  EASTVDDWIKRVG--DGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQ 73

Query: 148 HKLVARAGVMVS 159
            + +     +  
Sbjct: 74  SEAIGDRFNVRR 85

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 36.0 bits (82), Expect = 4e-04
 Identities = 19/63 (30%), Positives = 37/63 (58%)

Query: 86  IGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA 145
           I S++ +D  +A+ ++  + +++ + A+WC  C  + P  E L+ DY  ++ F  VDV+A
Sbjct: 7   IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA 66

Query: 146 VPH 148
           V  
Sbjct: 67  VAA 69

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 35.7 bits (81), Expect = 5e-04
 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           ++  F  V+ E+      V++ + A WC  C  + P ++++A +Y  +L+   ++ +  P
Sbjct: 7   NDDTFKNVVLES---SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP 63

Query: 148 H 148
           +
Sbjct: 64  N 64

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 6e-04
 Identities = 12/62 (19%), Positives = 20/62 (32%)

Query: 92  FDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLV 151
            +    EA      ++++   SWC  C  LKPK  +          F  V++        
Sbjct: 14  LEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKD 73

Query: 152 AR 153
             
Sbjct: 74  ED 75

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 35.2 bits (80), Expect = 6e-04
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP 147
           ++  FD  + +A      +++ + A WC  C  + P L+++A +Y  +L    ++++  P
Sbjct: 8   TDDSFDTDVLKADGA---ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64

Query: 148 H 148
            
Sbjct: 65  G 65

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (81), Expect = 7e-04
 Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 88  SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY---HPRLRFYNVDVN 144
           SES+ D  + +A   D  V++        +       + +L  ++     ++   +++ +
Sbjct: 23  SESRLDDWLTQAP--DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.84
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.84
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.84
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.84
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.84
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.84
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.83
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.82
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.82
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.81
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.8
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.8
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.8
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.78
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.77
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.76
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.73
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.72
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.69
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.68
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.68
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.67
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.67
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.64
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.63
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.59
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.58
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.58
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.55
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.51
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.45
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.43
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.43
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.4
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.38
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.37
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.36
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.34
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.34
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.3
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.29
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.27
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.25
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.25
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.19
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.04
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.86
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.56
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.45
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.44
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.3
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.28
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.16
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	98.15
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.06
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.02
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.01
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.9
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	97.88
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.74
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	97.73
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	97.68
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	97.62
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.51
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	97.39
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	97.38
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.36
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.36
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.31
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.27
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.26
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.25
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	97.22
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.14
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.06
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.03
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.97
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.75
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	96.71
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.69
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	96.6
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	96.52
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	96.26
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.26
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.05
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	96.01
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	95.84
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	95.11
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	93.66
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	92.68
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	91.67
d1r5pa_	90	Circadian oscillation regulator KaiB {Cyanobacteri	91.3
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	89.02
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	88.87
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	84.49
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	81.93

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=4.6e-21  Score=131.65  Aligned_cols=78  Identities=17%  Similarity=0.418  Sum_probs=72.5

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+.++.+.++|+..+..  .+++++||+|||+||++|+.+.|.|++++++|++.+.+++||++++++ ++++|+|+++||
T Consensus         6 ~v~~i~~~~~~~~~l~~--~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~-l~~~~~V~~~Pt   82 (111)
T d1xwaa_           6 MVYQVKDKADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECED-IAMEYNISSMPT   82 (111)
T ss_dssp             CEEECCSHHHHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH-HHHHTTCCSSSE
T ss_pred             eEEEECCHHHHHHHHHh--cCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcc-hhhcCCCccccE
Confidence            46778899999998865  578999999999999999999999999999997789999999999999 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        83 ~   83 (111)
T d1xwaa_          83 F   83 (111)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.9e-21  Score=130.89  Aligned_cols=76  Identities=24%  Similarity=0.507  Sum_probs=70.0

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++.|.+.++|++.+..  +.+++++|+|||+||++|+.+.|.++++++++ +++.|+++|++++++ ++++|+|+++||+
T Consensus         2 v~~i~s~~~f~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~-~~~~~~~vd~d~~~~-~~~~~~V~~~Pt~   77 (105)
T d2ifqa1           2 VKQIESKTAFQEALDA--AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDCQD-VASECEVKCMPTF   77 (105)
T ss_dssp             CEEECSHHHHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHH-HHHHTTCCBSSEE
T ss_pred             eEEcCCHHHHHHHHHh--CCCCEEEEEEEcCCccchhhhhhhhhhhcccc-ccceeeecccccCHh-HHHHcCceEEEEE
Confidence            5678899999999965  56789999999999999999999999999998 678899999999999 9999999999985

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.84  E-value=3.1e-21  Score=133.02  Aligned_cols=80  Identities=26%  Similarity=0.573  Sum_probs=74.6

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..|++.++|++.+..+...+++++|+|||+||++|+.+.|.|+++++++.+++.|++||++++++ ++++|+|+++||
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~-l~~~~~v~~~Pt   81 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA-VAEAAGITAMPT   81 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH-HHHHHTCCBSSE
T ss_pred             CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeecccccc-ccccccccCCCE
Confidence            5778889999999998776789999999999999999999999999999997789999999999999 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        82 ~   82 (112)
T d1ep7a_          82 F   82 (112)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.3e-21  Score=131.51  Aligned_cols=77  Identities=18%  Similarity=0.444  Sum_probs=71.2

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .++.|.+.++|++.+..  +.+++++|+|||+||++|+.+.|.|++++++| +++.|+++|++++++ ++++|+|+++||
T Consensus         2 ~v~~i~s~~~f~~~l~~--~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~-~~~~f~~vd~d~~~~-l~~~~~v~~~Pt   77 (107)
T d1gh2a_           2 GVKPVGSDPDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQCQG-TAATNNISATPT   77 (107)
T ss_dssp             CEEEECSGGGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTSHH-HHHHTTCCSSSE
T ss_pred             ceEEcCCHHHHHHHHHh--CCCCEEEEEEECCCCCCccccchhhhcccccc-ccccccccccccchh-hhhhcCceeceE
Confidence            47788999999999865  56889999999999999999999999999999 679999999999999 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        78 ~   78 (107)
T d1gh2a_          78 F   78 (107)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.84  E-value=5.1e-21  Score=132.34  Aligned_cols=75  Identities=23%  Similarity=0.484  Sum_probs=71.4

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+.++.+.++|++.+    +++++++|+|||+||++|+.+.|.|+++++++ +++.|++||+|++++ ++++|+|.++||
T Consensus         9 ~vi~i~s~~~~~~~~----~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~d~~~~-l~~~~~V~~~Pt   82 (113)
T d1r26a_           9 SVVDVYSVEQFRNIM----SEDILTVAWFTAVWCGPCKTIERPMEKIAYEF-PTVKFAKVDADNNSE-IVSKCRVLQLPT   82 (113)
T ss_dssp             CCEEECCHHHHHHHH----HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHC-TTSEEEEEETTTCHH-HHHHTTCCSSSE
T ss_pred             ceEEeCCHHHHHHHH----cCCCeEEEEEECCCCccchhhceecccccccc-ccccccccccccchh-hHHHccccCCCE
Confidence            578899999999999    78999999999999999999999999999999 799999999999999 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        83 ~   83 (113)
T d1r26a_          83 F   83 (113)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.84  E-value=6.3e-21  Score=131.52  Aligned_cols=79  Identities=18%  Similarity=0.428  Sum_probs=74.0

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .++.+.+.++|++.+..+...++++||+|||+||++|+.+.|.|+++++++ +++.|+++|++++++ ++++|+|+++||
T Consensus         5 ~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~-~~~~~~~vd~d~~~~-l~~~~~I~~~Pt   82 (113)
T d1ti3a_           5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF-PNVTFLKVDVDELKA-VAEEWNVEAMPT   82 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHC-SSEEEEEEETTTCHH-HHHHHHCSSTTE
T ss_pred             cEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccC-CCceEEeeeeecccc-ccccCeecccce
Confidence            578889999999988887788999999999999999999999999999999 779999999999999 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        83 ~   83 (113)
T d1ti3a_          83 F   83 (113)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=8.4e-21  Score=131.16  Aligned_cols=79  Identities=18%  Similarity=0.429  Sum_probs=73.8

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+.+.++|++.+..+++.++++||+|||+||++|+.+.|.|++++++| +++.|++||++++++ ++++|+|+++||
T Consensus         7 ~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~-~~~~~~~vd~~~~~~-l~~~~~V~~~Pt   84 (114)
T d1xfla_           7 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL-PNVLFLKVDTDELKS-VASDWAIQAMPT   84 (114)
T ss_dssp             CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHC-SSEEEEEEETTTSHH-HHHHTTCCSSSE
T ss_pred             cEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccc-cccceeEEEeeecee-eccccceeeeEE
Confidence            577888999999999877788999999999999999999999999999999 679999999999999 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        85 ~   85 (114)
T d1xfla_          85 F   85 (114)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.83  E-value=4.8e-21  Score=130.19  Aligned_cols=70  Identities=24%  Similarity=0.551  Sum_probs=65.8

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+    ++++++||+|||+||++|+.+.|.+++++++|++++.|++||++.+++ ++++|+|.++||+
T Consensus         6 t~~~f~~~i----~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~V~~~Pt~   75 (105)
T d1nw2a_           6 TDANFQQAI----QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE-TTSQFGIMSIPTL   75 (105)
T ss_dssp             CTTTHHHHT----TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH-HHHHTTCCBSSEE
T ss_pred             CHHHHHHHH----hCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcc-cHHHCCcceeeEE
Confidence            446799988    789999999999999999999999999999998889999999999999 9999999999985

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.3e-21  Score=136.70  Aligned_cols=78  Identities=21%  Similarity=0.294  Sum_probs=71.7

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      .+..+.+..+|++.+..  +.+++|||+|||+||++|+.+.|.|++++++|++.+.|++||++++++ ++++|+|+++||
T Consensus         3 ~l~~l~s~~~~dq~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~-la~~~~I~~~PT   79 (137)
T d1qgva_           3 MLPHLHNGWQVDQAILS--EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD-FNKMYELYDPCT   79 (137)
T ss_dssp             SSCBCCSHHHHHHHHHT--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT-TTTSSCSCSSCE
T ss_pred             cccccCCHHHHHHHHHh--CCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccch-hhhhcCeeeEEE
Confidence            45667899999999964  568899999999999999999999999999997789999999999999 999999999998


Q ss_pred             C
Q 031285          162 I  162 (162)
Q Consensus       162 i  162 (162)
                      +
T Consensus        80 ~   80 (137)
T d1qgva_          80 V   80 (137)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.82  E-value=1.8e-20  Score=127.02  Aligned_cols=74  Identities=26%  Similarity=0.569  Sum_probs=69.0

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++.+++.++|++.+    +++++++|+|||+||++|+.+.|.++++++++ +++.|+++|++++++ ++++|+|.++||+
T Consensus         2 v~~i~s~~~f~~~i----~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~-~~~~~~~vd~d~~~~-~~~~~~V~~~Pt~   75 (103)
T d1syra_           2 VKIVTSQAEFDSII----SQNELVIVDFFAEWCGPCKRIAPFYEECSKTY-TKMVFIKVDVDEVSE-VTEKENITSMPTF   75 (103)
T ss_dssp             CEEECSHHHHHHHH----HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTTHH-HHHHTTCCSSSEE
T ss_pred             cEEeCCHHHHHHHH----hCCCcEEEEEeCCcccCcccccccchhhhhcc-cceEEEeeccccCcc-eeeeeeeecceEE
Confidence            45678999999999    67899999999999999999999999999999 778999999999999 9999999999985

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.81  E-value=2.5e-20  Score=126.94  Aligned_cols=71  Identities=20%  Similarity=0.564  Sum_probs=66.0

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+.   ++++++||+|||+||++|+.+.|.++++++++.+++.+++||++.+++ ++++|+|+++||+
T Consensus         7 ~~~~f~~~v~---~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~-l~~~~~V~~~Pt~   77 (107)
T d1dbya_           7 NDDTFKNVVL---ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN-VASEYGIRSIPTI   77 (107)
T ss_dssp             CHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHHTCCSSCEE
T ss_pred             cHHHHHHHHH---hCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchh-HHHHhcccceEEE
Confidence            5688988873   678999999999999999999999999999998889999999999999 9999999999985

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.80  E-value=4.9e-20  Score=124.77  Aligned_cols=74  Identities=16%  Similarity=0.522  Sum_probs=66.6

Q ss_pred             eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +++++ ++|++.+.   +++++++|+|||+||++|+.+.|.++++++++.+++.+++||++.+++ ++++|+|+++||+
T Consensus         2 ~el~d-~~f~~~v~---~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~-l~~~~~V~~~Pt~   75 (104)
T d1fb6a_           2 QDVND-SSWKEFVL---ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG-IATQYNIRSIPTV   75 (104)
T ss_dssp             EECCT-TTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             eECch-hhHHHHHH---cCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchh-hhhhcceeeeeEE
Confidence            34544 67888773   678999999999999999999999999999998889999999999999 9999999999985

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.80  E-value=5.2e-20  Score=125.54  Aligned_cols=75  Identities=21%  Similarity=0.526  Sum_probs=67.2

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++ +.++|++.+.   +++++++|+|||+||++|+.+.|.|+++++++++.+.|++||++++++ ++++|+|+++||+
T Consensus         4 V~~l-t~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~-l~~~~~I~~~Pt~   78 (108)
T d1thxa_           4 VITI-TDAEFESEVL---KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT-TVKKYKVEGVPAL   78 (108)
T ss_dssp             EEEC-CGGGHHHHTT---TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH-HHHHTTCCSSSEE
T ss_pred             ceEC-CHHHHHHHHH---hCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHH-HHHHhcccCCCEE
Confidence            4556 4478987662   678999999999999999999999999999998889999999999999 9999999999985

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=6.5e-20  Score=124.97  Aligned_cols=75  Identities=19%  Similarity=0.516  Sum_probs=67.1

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++++ ++|++.+.   +++++|+|+|||+||++|+.+.|.++++++++.+++.++++|+++++. ++++|+|.++||+
T Consensus         4 v~~lt~-~~f~~~v~---~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~-l~~~~~v~~~PT~   78 (108)
T d2trxa_           4 IIHLTD-DSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPTL   78 (108)
T ss_dssp             EEECCT-TTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT-HHHHTTCCSSSEE
T ss_pred             ceECCH-HHHHHHHH---hCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhh-HHHHhCCCcEEEE
Confidence            555644 77887652   679999999999999999999999999999998899999999999999 9999999999985

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=5.9e-19  Score=122.40  Aligned_cols=79  Identities=18%  Similarity=0.369  Sum_probs=69.2

Q ss_pred             CCCcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChHHHHHHcCC
Q 031285           78 PVSIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAGV  156 (162)
Q Consensus        78 ~~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~la~~~~I  156 (162)
                      +....+..+ +.++|++.+    ++++.++|+||++||++|+.+.|.|+++++.+. +++.|++||++.+.+ ++++|+|
T Consensus         7 ~~~s~v~~l-t~~~f~~~i----~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~-l~~~~~v   80 (119)
T d2b5ea4           7 PEDSAVVKL-ATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD-LCMEHNI   80 (119)
T ss_dssp             CTTSSCEEC-CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHH-HHHHTTC
T ss_pred             CCCCccEEc-CHHHHHHHH----hcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHH-HHHHhcc
Confidence            334455666 447899998    788999999999999999999999999999985 469999999999998 9999999


Q ss_pred             cccccC
Q 031285          157 MVSLMI  162 (162)
Q Consensus       157 ~~~Pti  162 (162)
                      +++|||
T Consensus        81 ~~~Pti   86 (119)
T d2b5ea4          81 PGFPSL   86 (119)
T ss_dssp             CSSSEE
T ss_pred             ccCCeE
Confidence            999985

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.77  E-value=3.4e-19  Score=122.78  Aligned_cols=76  Identities=26%  Similarity=0.511  Sum_probs=65.8

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC-ChHHHHHHcCCcccc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA-VPHKLVARAGVMVSL  160 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-~~~~la~~~~I~~~P  160 (162)
                      .+.++ +.++|.+.+..  +.+++++|+||++||++|+.+.|.|++++++| +++.|+++|++. +++ ++++|+|+++|
T Consensus         7 ~v~~~-~~d~f~~~l~~--~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~-~~v~~~~vd~~~~~~~-l~~~~~V~~~P   81 (112)
T d1f9ma_           7 KVTEV-NKDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY-LDVIFLKLDCNQENKT-LAKELGIRVVP   81 (112)
T ss_dssp             SEEEE-CTTTHHHHHHT--CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSTTHH-HHHHHCCSSSS
T ss_pred             eeEEe-CHHHHHHHHHH--cCCCEEEEEEEcCCCcchHHHHHHHhhhcccc-ccceeecccccccchh-hHhheeeccCC
Confidence            45566 44679988853  45789999999999999999999999999999 678999999986 667 99999999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      |+
T Consensus        82 t~   83 (112)
T d1f9ma_          82 TF   83 (112)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.2e-19  Score=122.80  Aligned_cols=76  Identities=13%  Similarity=0.312  Sum_probs=67.4

Q ss_pred             eecCCHHHHHHHHHHHhcCCCeEEEEEecC-------CChhhhhhhHhHHHHHHHhCCCeEEEEEECC-------CChHH
Q 031285           84 TPIGSESQFDRVIAEAQQLDESVIIVWMAS-------WCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-------AVPHK  149 (162)
Q Consensus        84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~-------WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-------~~~~~  149 (162)
                      ..|.+.++|.+.+..  ++|++|+|+|||+       ||+||+++.|.++++++++.+++.|++||++       .+.. 
T Consensus         4 i~v~~~~e~~~~l~~--~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~-   80 (119)
T d1woua_           4 VSVSGFEEFHRAVEQ--HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND-   80 (119)
T ss_dssp             EEEESHHHHHHHHHT--TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCH-
T ss_pred             EEeCCHHHHHHHHHH--cCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhh-
Confidence            456788999999965  6789999999995       9999999999999999999778999999994       4556 


Q ss_pred             HHHHcCCcccccC
Q 031285          150 LVARAGVMVSLMI  162 (162)
Q Consensus       150 la~~~~I~~~Pti  162 (162)
                      ++++|+|.++||+
T Consensus        81 l~~~~~V~~iPT~   93 (119)
T d1woua_          81 FRKNLKVTAVPTL   93 (119)
T ss_dssp             HHHHHCCCSSSEE
T ss_pred             HHHhCCeEEEEEE
Confidence            8999999999985

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.5e-18  Score=120.03  Aligned_cols=70  Identities=24%  Similarity=0.472  Sum_probs=64.2

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +.++|++.+    ++++.+||+|||+||++|+.+.|.|+++++++.   .++.+++||++.+.+ ++++|+|.++||+
T Consensus        13 ~~~~f~~~l----~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~-l~~~~~i~~~Pt~   85 (120)
T d1meka_          13 RKSNFAEAL----AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESD-LAQQYGVRGYPTI   85 (120)
T ss_dssp             CTTTHHHHH----HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCS-SHHHHTCCSSSEE
T ss_pred             CHHHHHHHH----hcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchh-HHHHhCCccCCeE
Confidence            568899988    678999999999999999999999999999983   359999999999998 9999999999985

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=1.3e-18  Score=113.67  Aligned_cols=59  Identities=19%  Similarity=0.309  Sum_probs=55.9

Q ss_pred             CCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          103 DESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +++.|++|||+||++|+.+.|.++++++++++.+.++.+|.+++++ ++++|+|+++||+
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~-la~~~~V~~~Pt~   60 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ-KAMEYGIMAVPTI   60 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC-TTTSTTTCCSSEE
T ss_pred             CceEEEEEECCCCcChHhhhhhcccccccccccccccccccccccc-ccccCCceEeeEE
Confidence            5788999999999999999999999999997789999999999999 9999999999985

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=3.6e-18  Score=111.87  Aligned_cols=56  Identities=14%  Similarity=0.249  Sum_probs=52.7

Q ss_pred             EEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          106 VIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .|+.|||+||++|+++.|.+++++++|++++.++++|++++++ ++++|||+++||+
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~-l~~~~~V~~~Pt~   59 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE-KAIEYGLMAVPAI   59 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG-GGGGTCSSCSSEE
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchh-hHHhcCceEeCEE
Confidence            4566999999999999999999999998789999999999999 9999999999985

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.68  E-value=3.7e-17  Score=110.71  Aligned_cols=61  Identities=20%  Similarity=0.270  Sum_probs=52.7

Q ss_pred             cCCCe-EEEEEecCCChhhhhhhHhHHHHHHHh----CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          101 QLDES-VIIVWMASWCRKCIYLKPKLEKLAADY----HPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~-vlV~F~a~WC~~C~~~~p~l~~l~~~~----~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ..+++ +|+.|||+|||+|+.+.|.+++++.+.    .+++.+..+|++++++ ++++|+|+++||+
T Consensus        12 ~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~-l~~~~~V~~vPTi   77 (107)
T d1a8la2          12 NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE-WADQYNVMAVPKI   77 (107)
T ss_dssp             TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH-HHHHTTCCSSCEE
T ss_pred             hcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccc-cccccccccceEE
Confidence            44555 566799999999999999999998653    4569999999999999 9999999999985

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.68  E-value=7.5e-17  Score=107.94  Aligned_cols=69  Identities=14%  Similarity=0.202  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           90 SQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        90 ~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +++.+.+..  ..+...++.||++|||+|+.+.|.++++++++ +++.+..+|++.+++ ++++|+|+++||+
T Consensus         4 ~~~~e~ik~--l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~-~~i~~~~vd~~~~~~-l~~~~~I~~vPt~   72 (96)
T d1hyua4           4 QSLLEQIRD--IDGDFEFETYYSLSCHNCPDVVQALNLMAVLN-PRIKHTAIDGGTFQN-EITERNVMGVPAV   72 (96)
T ss_dssp             HHHHHHHHH--CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-TTEEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             HHHHHHHHh--cCCCeEEEEEECCCCcchHHHHHHHHHHHHhC-CceEEEEEecccchH-HHhhcccccccEE
Confidence            455666632  35667888899999999999999999999987 789999999999999 9999999999985

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.3e-16  Score=109.59  Aligned_cols=78  Identities=17%  Similarity=0.299  Sum_probs=64.3

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCChH---HHHHHcC
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVPH---KLVARAG  155 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~  155 (162)
                      ..+.|.+.++++..+..  ++|++++|+|||+||++|+.+.|.+   .++.+.+ .++.++.+|++.+.+   +++++|+
T Consensus         3 ~f~~i~~~~~~~~~l~~--~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~   79 (117)
T d2fwha1           3 NFTQIKTVDELNQALVE--AKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL-ADTVLLQANVTANDAQDVALLKHLN   79 (117)
T ss_dssp             CCEECCSHHHHHHHHHH--HTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT-TTSEEEEEECTTCCHHHHHHHHHTT
T ss_pred             CceEecCHHHHHHHHHH--cCCCeEEEEEecccCCcccccchhHHhHHHHHHhc-cceEEEecccccchhHHHHHHhhhe
Confidence            45678888999988866  5799999999999999999999998   5565555 678888898865432   2899999


Q ss_pred             CcccccC
Q 031285          156 VMVSLMI  162 (162)
Q Consensus       156 I~~~Pti  162 (162)
                      |.++||+
T Consensus        80 v~~~Pt~   86 (117)
T d2fwha1          80 VLGLPTI   86 (117)
T ss_dssp             CCSSSEE
T ss_pred             hhhceEE
Confidence            9999985

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=5.9e-18  Score=119.87  Aligned_cols=72  Identities=15%  Similarity=0.109  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCC-eEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPR-LRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..+|++.+..  ..+++|+|+|||+||++|+.+.|.|++++++|++. +.+++||++.+++ ++++|+|+++||+
T Consensus        23 ~~~~~d~~~~~--~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~-la~~~~V~~~PT~   95 (132)
T d2hfda1          23 SESRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA-IGDRFGVFRFPAT   95 (132)
T ss_dssp             CHHHHHHHHHH--CSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHH-HHHHHTCCSCCEE
T ss_pred             ccccHHHHHHh--CCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHH-HHHhhccCcceeE
Confidence            56889988864  56788999999999999999999999999999654 7889999999999 9999999999985

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.64  E-value=1.1e-17  Score=116.52  Aligned_cols=72  Identities=11%  Similarity=0.016  Sum_probs=54.4

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +..++++.+..  ..+++|++.|||+||++|+.+.|.|++++++|++ ++.+++||++.+++ ++++|||+++||+
T Consensus        17 ~~~~ld~~~~~--~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~-l~~~~~V~~~Pt~   89 (119)
T d2es7a1          17 EASTVDDWIKR--VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEA-IGDRFNVRRFPAT   89 (119)
T ss_dssp             CCC----------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHH-HHHTTTCCSSSEE
T ss_pred             cccCHHHHHHh--CCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHH-HHHhcCcCcceEE
Confidence            44567877754  5688999999999999999999999999999955 69999999999999 9999999999985

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.63  E-value=2.5e-16  Score=108.28  Aligned_cols=75  Identities=12%  Similarity=0.164  Sum_probs=61.6

Q ss_pred             eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh---HHHHHHcCCcccc
Q 031285           84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARAGVMVSL  160 (162)
Q Consensus        84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~la~~~~I~~~P  160 (162)
                      ..+.+.+.+++.+    +++++++|+||++||++|+.+.|.|++++++++..+.++.++...+.   .+++++|+|.++|
T Consensus        11 ~~~~t~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~P   86 (115)
T d1zmaa1          11 LEVTTVVRAQEAL----DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVP   86 (115)
T ss_dssp             SEECCHHHHHHHH----HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSC
T ss_pred             eeeCCHHHHHHHH----hcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeeccccccccccccccccccccc
Confidence            3455778999999    78999999999999999999999999999999766766655443332   1288999999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      |+
T Consensus        87 Tl   88 (115)
T d1zmaa1          87 GF   88 (115)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=1e-15  Score=106.34  Aligned_cols=68  Identities=13%  Similarity=0.015  Sum_probs=58.6

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHh---CCCeEEEEEECCC-----ChHHHHHHcCC--c
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY---HPRLRFYNVDVNA-----VPHKLVARAGV--M  157 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~---~~~v~~~~vd~d~-----~~~~la~~~~I--~  157 (162)
                      +.++|++++    ++++.+||+|||+||++|+.  |.|+++++++   .+.+.+++||++.     +.+ ++++|+|  +
T Consensus         8 ~~~nFd~~v----~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~-l~~~~~i~~~   80 (122)
T d2c0ga2           8 DELSFEKTV----ERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKA-LGDRYKVDDK   80 (122)
T ss_dssp             CTTTHHHHH----TTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHH-HHHHTTCCTT
T ss_pred             ChHhHHHHH----hcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHH-HHHHhhcccC
Confidence            457899999    78899999999999999994  9999999886   3679999999864     456 9999988  5


Q ss_pred             ccccC
Q 031285          158 VSLMI  162 (162)
Q Consensus       158 ~~Pti  162 (162)
                      ++|||
T Consensus        81 ~~PTi   85 (122)
T d2c0ga2          81 NFPSI   85 (122)
T ss_dssp             SCCEE
T ss_pred             CCCcE
Confidence            79986

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=2.4e-16  Score=111.76  Aligned_cols=74  Identities=19%  Similarity=0.399  Sum_probs=60.5

Q ss_pred             CceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC---CCeEEEEEECCCChHHHHHHcCCcc
Q 031285           82 PLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYH---PRLRFYNVDVNAVPHKLVARAGVMV  158 (162)
Q Consensus        82 ~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~la~~~~I~~  158 (162)
                      .+..+ +..+|++.+.   +.++.|+|+|||+||++|+.+.|.|+++++.|.   ..+.++.+|.+.  + ++++|+|.+
T Consensus        13 ~V~~l-~~~nf~~~v~---~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~--~-~~~~~~v~~   85 (140)
T d2b5ea1          13 SVFQL-VGKNHDEIVN---DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE--N-DVRGVVIEG   85 (140)
T ss_dssp             SEEEE-CTTTHHHHHH---CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG--C-CCSSCCCSS
T ss_pred             CcEEe-cCcCHHHHHh---cCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc--h-hcccccccc
Confidence            45566 4478998883   568899999999999999999999999999883   246776776654  4 789999999


Q ss_pred             cccC
Q 031285          159 SLMI  162 (162)
Q Consensus       159 ~Pti  162 (162)
                      +|||
T Consensus        86 ~Ptl   89 (140)
T d2b5ea1          86 YPTI   89 (140)
T ss_dssp             SSEE
T ss_pred             CCeE
Confidence            9985

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.58  E-value=1.2e-15  Score=106.08  Aligned_cols=74  Identities=14%  Similarity=0.088  Sum_probs=59.6

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhh------hhhhHhHHHHHHHhC-CCeEEEEEECCCChHHHHHHcC
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKC------IYLKPKLEKLAADYH-PRLRFYNVDVNAVPHKLVARAG  155 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C------~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~la~~~~  155 (162)
                      +.++ +.++|++++    ++++.++|+||||||++|      ..+.+.++.+++.+. .++.|++||++.+.+ ++++|+
T Consensus        13 V~~L-~~~nf~~~l----~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~-l~~~~~   86 (124)
T d1a8ya1          13 VINV-NAKNYKNVF----KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAA-VAKKLG   86 (124)
T ss_dssp             CEEC-CTTTHHHHH----HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHH-HHHTTT
T ss_pred             cEEC-CHHHHHHHH----HhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccc-hhhccc
Confidence            4455 467899999    567899999999999964      444555666666653 359999999999999 999999


Q ss_pred             CcccccC
Q 031285          156 VMVSLMI  162 (162)
Q Consensus       156 I~~~Pti  162 (162)
                      |+++|||
T Consensus        87 I~~yPTi   93 (124)
T d1a8ya1          87 LTEEDSI   93 (124)
T ss_dssp             CCSTTCE
T ss_pred             cccCCcE
Confidence            9999996

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.55  E-value=1.6e-16  Score=108.83  Aligned_cols=75  Identities=20%  Similarity=0.313  Sum_probs=56.0

Q ss_pred             ceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCC--eEEEEEECCCChHHHHHHcCCcccc
Q 031285           83 LTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPR--LRFYNVDVNAVPHKLVARAGVMVSL  160 (162)
Q Consensus        83 ~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~--v~~~~vd~d~~~~~la~~~~I~~~P  160 (162)
                      ++.+ +.++|++.+   .++++++||+|||+||++|+++.|.|+++++.+...  ..++.++.+.... .+.+++|.++|
T Consensus         4 V~~l-t~~nF~~~v---~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~P   78 (116)
T d2djja1           4 VTVV-VAKNYNEIV---LDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA-NDVPDEIQGFP   78 (116)
T ss_dssp             SEEC-CTTTTTTSS---SCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT-SCCSSCCSSSS
T ss_pred             cEEc-ccCCHHHHH---hcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccch-hhhcccccCCC
Confidence            3444 457888776   267899999999999999999999999999999432  2233344444444 46688999999


Q ss_pred             cC
Q 031285          161 MI  162 (162)
Q Consensus       161 ti  162 (162)
                      ||
T Consensus        79 ti   80 (116)
T d2djja1          79 TI   80 (116)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.51  E-value=1.9e-14  Score=102.48  Aligned_cols=61  Identities=15%  Similarity=0.200  Sum_probs=50.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCChH-----------------------HHHHHcC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVPH-----------------------KLVARAG  155 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~-----------------------~la~~~~  155 (162)
                      -+||+++|+|||+||+||+.++|.|+++.++|++  ++.++.|+.|...+                       .+++.|+
T Consensus        26 l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~  105 (144)
T d1i5ga_          26 LAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD  105 (144)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             cCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCC
Confidence            4699999999999999999999999999999953  58889988764421                       2567788


Q ss_pred             Cccccc
Q 031285          156 VMVSLM  161 (162)
Q Consensus       156 I~~~Pt  161 (162)
                      |.++|+
T Consensus       106 v~~iPt  111 (144)
T d1i5ga_         106 VKSIPT  111 (144)
T ss_dssp             CCSSSE
T ss_pred             CCCcCE
Confidence            888886

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.6e-14  Score=109.75  Aligned_cols=79  Identities=22%  Similarity=0.244  Sum_probs=68.9

Q ss_pred             CcCceecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccc
Q 031285           80 SIPLTPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVS  159 (162)
Q Consensus        80 ~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~  159 (162)
                      ...+.+|.+.++|.+.+... ..+..|||+||++||++|+.+.|.|++|+.+| +.++|++||++..+  +.++|+|.++
T Consensus        98 ~G~v~~i~~~~~f~~~v~~~-~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~-~~vkF~ki~~~~~~--~~~~~~i~~l  173 (217)
T d2trcp_          98 YGFVYELETGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNSSLECLAAEY-PMVKFCKIRASNTG--AGDRFSSDVL  173 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHTTC-TTSEEEEEEHHHHT--CSTTSCGGGC
T ss_pred             CCeEEEcCCHHHHHHHHHhc-CCCCeEEEEEEcCCCCChhhhhhhHHHHhhhc-ccceEEEEccccch--hHHhCCCCCC
Confidence            45688898999999998653 45668999999999999999999999999999 88999999998764  4689999999


Q ss_pred             ccC
Q 031285          160 LMI  162 (162)
Q Consensus       160 Pti  162 (162)
                      ||+
T Consensus       174 Ptl  176 (217)
T d2trcp_         174 PTL  176 (217)
T ss_dssp             SEE
T ss_pred             CeE
Confidence            985

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.43  E-value=1.3e-13  Score=97.71  Aligned_cols=61  Identities=20%  Similarity=0.341  Sum_probs=50.0

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECCCChH-----------------------HHHHHcC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVNAVPH-----------------------KLVARAG  155 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~-----------------------~la~~~~  155 (162)
                      -+||+++|+|||+||++|+.++|.|+++.++|.  .++.++.|+.|...+                       .+++.|+
T Consensus        26 ~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~  105 (144)
T d1o73a_          26 LVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG  105 (144)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT
T ss_pred             hCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcC
Confidence            469999999999999999999999999999993  358999998753321                       2567778


Q ss_pred             Cccccc
Q 031285          156 VMVSLM  161 (162)
Q Consensus       156 I~~~Pt  161 (162)
                      |.++|+
T Consensus       106 v~~~Pt  111 (144)
T d1o73a_         106 VESIPT  111 (144)
T ss_dssp             CCSSSE
T ss_pred             CCcCCE
Confidence            888876

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=1.2e-13  Score=96.84  Aligned_cols=57  Identities=19%  Similarity=0.255  Sum_probs=45.1

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC-----------------------CChHHHHHHcCCc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN-----------------------AVPHKLVARAGVM  157 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----------------------~~~~~la~~~~I~  157 (162)
                      .+|+++||+|||+||+||+.++|.++++++.   ++.++.++.+                       .+.. ++..|+|.
T Consensus        18 ~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~---~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~v~   93 (136)
T d1z5ye1          18 TQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGM-LGLDLGVY   93 (136)
T ss_dssp             HSSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCH-HHHHHTCC
T ss_pred             cCCCEEEEEEEcCcCCCcCccccchhhhhhh---hhhhcccccccchhhhHHHHHHcCCccceeecccchh-HHHhcccC
Confidence            5799999999999999999999999998754   3555555542                       3334 78888999


Q ss_pred             cccc
Q 031285          158 VSLM  161 (162)
Q Consensus       158 ~~Pt  161 (162)
                      ++|+
T Consensus        94 ~~P~   97 (136)
T d1z5ye1          94 GAPE   97 (136)
T ss_dssp             SBSE
T ss_pred             Ccce
Confidence            9886

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=2.6e-13  Score=94.64  Aligned_cols=43  Identities=26%  Similarity=0.514  Sum_probs=37.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d  144 (162)
                      .+|+++||+|||+||++|+..+|.+.++.+++ +++.++.|+.+
T Consensus        23 ~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~-~~~~~v~v~~~   65 (134)
T d1zzoa1          23 LLGKPAVLWFWAPWCPTCQGEAPVVGQVAASH-PEVTFVGVAGL   65 (134)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEECS
T ss_pred             hCCCEEEEEecccccCcccccchhhHHHHhhh-ccccccccccc
Confidence            35999999999999999999999999999998 56777777653

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.38  E-value=3.8e-13  Score=94.08  Aligned_cols=44  Identities=23%  Similarity=0.524  Sum_probs=39.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~  145 (162)
                      -+||++||+|||+||++|+...|.++++.+++ .++.++.|+.+.
T Consensus        22 ~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~-~~v~~v~v~~~~   65 (134)
T d1lu4a_          22 LQGKPAVLWFWTPWCPFCNAEAPSLSQVAAAN-PAVTFVGIATRA   65 (134)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEECSS
T ss_pred             hCCCEEEEEEeecccCCceecchhHHHHhhhh-cccccccccccc
Confidence            35899999999999999999999999999987 678899898753

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.37  E-value=4.4e-13  Score=99.30  Aligned_cols=60  Identities=13%  Similarity=0.212  Sum_probs=51.1

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC-----------------------------CCChHHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV-----------------------------NAVPHKLV  151 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-----------------------------d~~~~~la  151 (162)
                      .+|+++||+|||+||++|+..+|.|.++.++|++++.++.|+.                             |...+ ++
T Consensus        30 ~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~-~~  108 (187)
T d2cvba1          30 FHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQE-VA  108 (187)
T ss_dssp             CCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSH-HH
T ss_pred             hCCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhh-hc
Confidence            4689999999999999999999999999999987899988863                             23334 77


Q ss_pred             HHcCCccccc
Q 031285          152 ARAGVMVSLM  161 (162)
Q Consensus       152 ~~~~I~~~Pt  161 (162)
                      ++|++..+|+
T Consensus       109 ~~~~v~~~P~  118 (187)
T d2cvba1         109 KAYRALRTPE  118 (187)
T ss_dssp             HHTTCCEESE
T ss_pred             ccccccceee
Confidence            8888888875

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.36  E-value=8e-13  Score=93.30  Aligned_cols=44  Identities=16%  Similarity=0.360  Sum_probs=40.6

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d  144 (162)
                      ..+++++|+||++||++|+..+|.++++.+++++++.++.|+.+
T Consensus        27 ~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~   70 (143)
T d2b5xa1          27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMP   70 (143)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred             hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEee
Confidence            57899999999999999999999999999999778999988763

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.34  E-value=7.3e-13  Score=93.17  Aligned_cols=61  Identities=21%  Similarity=0.299  Sum_probs=50.3

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECC----------------------------CChHHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVN----------------------------AVPHKLV  151 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d----------------------------~~~~~la  151 (162)
                      .+|+++||+|||+||++|+..+|.+.++.++++ .++.++.|..+                            .+.. ++
T Consensus        21 ~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~   99 (143)
T d2fy6a1          21 KKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGT-IA   99 (143)
T ss_dssp             CTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCH-HH
T ss_pred             hCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchH-HH
Confidence            578999999999999999999999999999984 45788777642                            2234 78


Q ss_pred             HHcCCcccccC
Q 031285          152 ARAGVMVSLMI  162 (162)
Q Consensus       152 ~~~~I~~~Pti  162 (162)
                      +.|++.++|++
T Consensus       100 ~~~~v~~~P~~  110 (143)
T d2fy6a1         100 QSLNISVYPSW  110 (143)
T ss_dssp             HHTTCCSSSEE
T ss_pred             HHcCCCccCEE
Confidence            89999998863

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.3e-13  Score=96.65  Aligned_cols=71  Identities=18%  Similarity=0.227  Sum_probs=53.1

Q ss_pred             HHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHh--CCCeEEEEEECCCChHHHHHH-cCCcccccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADY--HPRLRFYNVDVNAVPHKLVAR-AGVMVSLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~la~~-~~I~~~Pti  162 (162)
                      +|++.+..++.++|+++|+|||+||++|+.+.|.+.+..+..  ..++..++||.+...+ +... +...++|++
T Consensus        13 ~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~-~~~~~~~~~~~Pt~   86 (135)
T d1sena_          13 TLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPK-DEDFSPDGGYIPRI   86 (135)
T ss_dssp             CHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCS-CGGGCTTCSCSSEE
T ss_pred             EHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHH-HHHHHhhcccceeE
Confidence            356666666689999999999999999999999986554332  3578999999887766 4433 344557763

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=2.6e-13  Score=93.90  Aligned_cols=68  Identities=12%  Similarity=0.075  Sum_probs=54.2

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--Ce-----EEEEEECCCChHHHHHHcC--Ccc
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RL-----RFYNVDVNAVPHKLVARAG--VMV  158 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v-----~~~~vd~d~~~~~la~~~~--I~~  158 (162)
                      +.++|++++    .+++.++|+||++||..|+.  |.++++++++++  +.     .+.++|++.+.+ ++++++  |++
T Consensus        10 ~~~nFd~~i----~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~-l~~~~~~~I~~   82 (122)
T d1g7ea_          10 DTVTFYKVI----PKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNME-LSEKYKLDKES   82 (122)
T ss_dssp             SHHHHHHHG----GGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHH-HHHHHTCSSSS
T ss_pred             CHHhHHHHH----hhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHH-HHHhhcccccC
Confidence            668999999    78999999999999999874  899999999843  33     334445666667 998865  789


Q ss_pred             cccC
Q 031285          159 SLMI  162 (162)
Q Consensus       159 ~Pti  162 (162)
                      +|||
T Consensus        83 yPTi   86 (122)
T d1g7ea_          83 YPVF   86 (122)
T ss_dssp             CEEE
T ss_pred             CCeE
Confidence            9986

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.29  E-value=3.7e-12  Score=89.57  Aligned_cols=62  Identities=18%  Similarity=0.271  Sum_probs=50.9

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC--CeEEEEEECCCCh-----------------------HHHHHHcC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP--RLRFYNVDVNAVP-----------------------HKLVARAG  155 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~-----------------------~~la~~~~  155 (162)
                      .+||++||+|||+||++|+.++|.+.++.++|..  ++.++.|+.+...                       ..+++.|+
T Consensus        24 l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~  103 (144)
T d1o8xa_          24 LAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN  103 (144)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT
T ss_pred             hCCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcC
Confidence            4699999999999999999999999999999943  5888888876431                       12777888


Q ss_pred             CcccccC
Q 031285          156 VMVSLMI  162 (162)
Q Consensus       156 I~~~Pti  162 (162)
                      |.++|++
T Consensus       104 v~~~Pt~  110 (144)
T d1o8xa_         104 VESIPTL  110 (144)
T ss_dssp             CCSSSEE
T ss_pred             CCcCCEE
Confidence            8888863

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.27  E-value=1.5e-12  Score=91.94  Aligned_cols=58  Identities=22%  Similarity=0.307  Sum_probs=46.0

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC-----------------------CCChHHHHHHcCCc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV-----------------------NAVPHKLVARAGVM  157 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-----------------------d~~~~~la~~~~I~  157 (162)
                      .+|+++||+|||+||++|+.++|.++++.+.+  ++.++.|+.                       |.+.. +++.|+|.
T Consensus        29 ~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~v~  105 (144)
T d1knga_          29 FKGKVSLVNVWASWCVPCHDEAPLLTELGKDK--RFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGR-ASIEWGVY  105 (144)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT--TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSH-HHHHTTCC
T ss_pred             hCCCEEEEEeeccccccccccCchhhhhhhcc--CceeEEEEeeechHHHHHHHHHcCCccccccccccch-hhhhcCcc
Confidence            47999999999999999999999999998776  344444443                       23445 88888998


Q ss_pred             cccc
Q 031285          158 VSLM  161 (162)
Q Consensus       158 ~~Pt  161 (162)
                      ++|+
T Consensus       106 ~~P~  109 (144)
T d1knga_         106 GVPE  109 (144)
T ss_dssp             SSCE
T ss_pred             ccce
Confidence            8886

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.25  E-value=2.1e-12  Score=93.55  Aligned_cols=56  Identities=11%  Similarity=0.128  Sum_probs=49.1

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV  158 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~  158 (162)
                      -.++.+++.||++|||+|+.+.|.|+++++++ +++.+..|+++.+++ .+++|....
T Consensus        52 ~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~-~~~~~~~i~~d~~~~-~~~~~~~~~  107 (166)
T d1z6na1          52 IERRYRLLVAGEMWCPDCQINLAALDFAQRLQ-PNIELAIISKGRAED-DLRQRLALE  107 (166)
T ss_dssp             CCSCEEEEEECCTTCHHHHHHHHHHHHHHHHC-TTEEEEEECHHHHHH-HTTTTTTCS
T ss_pred             hcCCeEEEEEEeCcCccHHHHHHHHHHHHHHC-CCCcEEEEECccCHH-HHHHHHHhc
Confidence            47888999999999999999999999999998 788899999998887 778875443

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.7e-12  Score=89.99  Aligned_cols=75  Identities=11%  Similarity=0.089  Sum_probs=60.0

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhH---HHHHHHhCCCeEEEEEECCCCh-HHHHHHcCCcccccC
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKL---EKLAADYHPRLRFYNVDVNAVP-HKLVARAGVMVSLMI  162 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~-~~la~~~~I~~~Pti  162 (162)
                      ...+|++.+..++..+|++||+||++||++|+.+....   +++.+-++.++.++++|++... ..++++|+|.++|+|
T Consensus        27 ~~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti  105 (147)
T d2dlxa1          27 HKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYV  105 (147)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEE
T ss_pred             ccCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEE
Confidence            34568888888889999999999999999999987643   4555555456899999987663 228999999999985

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=1.3e-12  Score=87.61  Aligned_cols=58  Identities=12%  Similarity=0.127  Sum_probs=52.0

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      +...++|+.||++||++|+.+.+.|+++..+|  .++++.+|++++++ ++++|+++ +|+|
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~--~~~~v~vd~~~~~~-l~~~y~~~-VPvl   70 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRF--ILQEVDITLPENST-WYERYKFD-IPVF   70 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSS--EEEEEETTSSTTHH-HHHHSSSS-CSEE
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhc--ceEEEecccccCHH-HHHHhccc-CCce
Confidence            56788999999999999999999999998877  36888999999988 99999998 8974

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.04  E-value=1.7e-10  Score=80.24  Aligned_cols=47  Identities=15%  Similarity=0.382  Sum_probs=40.7

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCCh
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVP  147 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~  147 (162)
                      ..|+++||+||++||++|+.++|.+.++.+++. .++.++.|+.+...
T Consensus        23 ~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~   70 (137)
T d1st9a_          23 LKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESK   70 (137)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCH
T ss_pred             hCCCEEEEEEeeccccceeecccccccccccccccccccccccccchh
Confidence            358999999999999999999999999999984 35999999875543

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.86  E-value=2.5e-09  Score=77.34  Aligned_cols=59  Identities=17%  Similarity=0.460  Sum_probs=46.3

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC-hH---HHHHHcCCccc
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV-PH---KLVARAGVMVS  159 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~-~~---~la~~~~I~~~  159 (162)
                      .+||++||+||++||++|+...+.++++.+++. .++.++.|+++.. ++   ...+++++...
T Consensus        54 ~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~  117 (176)
T d1jfua_          54 FRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRL  117 (176)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTT
T ss_pred             hCCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcce
Confidence            368999999999999999999999999999984 4577788876632 22   25677777654

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=9.2e-08  Score=67.88  Aligned_cols=63  Identities=3%  Similarity=0.061  Sum_probs=48.1

Q ss_pred             CCcCceecCC-HHHHHHHHHHHhcCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCC
Q 031285           79 VSIPLTPIGS-ESQFDRVIAEAQQLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNA  145 (162)
Q Consensus        79 ~~~~~~~i~~-~~~f~~~l~~~~~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~  145 (162)
                      +.+.+...++ .-.+.+..    .+++.+++.|| +.||++|...++.|.+...++...+.++.|+.|.
T Consensus        12 P~f~L~~~~g~~~~l~~~~----~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~   76 (156)
T d2a4va1          12 PDLSLLNEDNDSISLKKIT----ENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADS   76 (156)
T ss_dssp             CSCEEECTTSCEEEHHHHH----HHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCC
T ss_pred             CCeEEECCCCCEEeeHHHc----CCccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccch
Confidence            4555555543 23466666    56788888778 8999999999999999999997777888888753

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.45  E-value=6.8e-08  Score=68.16  Aligned_cols=62  Identities=10%  Similarity=0.211  Sum_probs=46.7

Q ss_pred             CcCceecCC-HHHHHHHHHHHhcCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC
Q 031285           80 SIPLTPIGS-ESQFDRVIAEAQQLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA  145 (162)
Q Consensus        80 ~~~~~~i~~-~~~f~~~l~~~~~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~  145 (162)
                      .+.+...++ .-.+.+..    .+||++||.|| ++||++|...++.+.++.++++ .++.++.++.+.
T Consensus        10 dF~L~~~~G~~~~Lsd~~----~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~   74 (160)
T d2cx4a1          10 DFTLPNQDFEPVNLYEVL----KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDS   74 (160)
T ss_dssp             CCEECCTTSCCEEHHHHH----TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSC
T ss_pred             CeEeECCCCCEEehHHHh----hCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccc
Confidence            344444332 12456666    67999999999 9999999999999999999884 458888888753

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.6e-07  Score=68.78  Aligned_cols=45  Identities=16%  Similarity=0.128  Sum_probs=40.7

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~  145 (162)
                      .+|+++||.+||+|||+|.+..+.|++|.++|++ ++.++.+.+++
T Consensus        22 ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nq   67 (184)
T d2f8aa1          22 LRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ   67 (184)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             cCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccc
Confidence            5799999999999999999999999999999954 69999998764

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=6.4e-07  Score=63.95  Aligned_cols=46  Identities=9%  Similarity=0.219  Sum_probs=40.8

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      ..|+++|+.|| +.||+.|...++.|.+..+++. .++.++.|+.+..
T Consensus        42 ~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~   89 (169)
T d2bmxa1          42 HPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSE   89 (169)
T ss_dssp             STTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCH
T ss_pred             HCCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccch
Confidence            56999999999 9999999999999999999994 4699999988653

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.28  E-value=4.5e-07  Score=64.66  Aligned_cols=46  Identities=7%  Similarity=0.098  Sum_probs=40.9

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCC-CeEEEEEECCCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHP-RLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~  146 (162)
                      .+||++||.|| ++||++|....+.|.++.++++. ++.++.|+.+..
T Consensus        31 ~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~   78 (167)
T d1e2ya_          31 YKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSE   78 (167)
T ss_dssp             GTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCH
T ss_pred             HCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcH
Confidence            35889999999 99999999999999999999944 799999998764

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.16  E-value=1.2e-06  Score=62.65  Aligned_cols=46  Identities=15%  Similarity=0.214  Sum_probs=40.7

Q ss_pred             cCCCeEEEEEecC-CChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          101 QLDESVIIVWMAS-WCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~a~-WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      ..||.+|+.||.. ||++|...++.|.++.+++. .++.++.|+.|..
T Consensus        29 ~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~   76 (166)
T d1we0a1          29 LKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTH   76 (166)
T ss_dssp             TSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCH
T ss_pred             hCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccH
Confidence            5699999999965 99999999999999999994 5799999998754

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=8.1e-07  Score=63.32  Aligned_cols=43  Identities=9%  Similarity=0.087  Sum_probs=37.5

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d  144 (162)
                      ..||++|+.|| +.||++|...+|.|+++..++ +++.++.|..+
T Consensus        42 ~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~-~~~~vv~Is~d   85 (164)
T d1qxha_          42 FAGKRKVLNIFPSIDTGVCAASVRKFNQLATEI-DNTVVLCISAD   85 (164)
T ss_dssp             GTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTS-TTEEEEEEESS
T ss_pred             hCCCeEEEEEecchhcccchHHHHHHHHHHHhh-ccceeeeEEcC
Confidence            35889999998 779999999999999999887 67888888865

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.06  E-value=4e-06  Score=59.72  Aligned_cols=45  Identities=13%  Similarity=0.270  Sum_probs=38.6

Q ss_pred             cCCCeEEEEEecCCCh-hhhhhhHhHHHHHHHh---CCCeEEEEEECCC
Q 031285          101 QLDESVIIVWMASWCR-KCIYLKPKLEKLAADY---HPRLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~-~C~~~~p~l~~l~~~~---~~~v~~~~vd~d~  145 (162)
                      ..||++||+||.+||+ .|....+.|.++.+++   +.++.++.|.+|.
T Consensus        29 ~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp   77 (172)
T d1xzoa1          29 LKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDP   77 (172)
T ss_dssp             GTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             hCCCEEEEEEecccccccccccchhhhhhhhhhcccccccccccccccc
Confidence            3599999999999996 7999999999988887   3468999998873

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.02  E-value=5.9e-06  Score=60.54  Aligned_cols=45  Identities=2%  Similarity=0.092  Sum_probs=40.5

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~  145 (162)
                      ..||++|+.|| ++||+.|..+.+.|.++.++++ .+++++.|+.|.
T Consensus        31 ~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds   77 (194)
T d1uula_          31 YKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDS   77 (194)
T ss_dssp             GTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSC
T ss_pred             hCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCc
Confidence            45899999999 9999999999999999999994 479999999874

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.01  E-value=2.6e-06  Score=59.42  Aligned_cols=52  Identities=10%  Similarity=0.218  Sum_probs=38.3

Q ss_pred             eEEEEEecCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChH--HHHHHcCC
Q 031285          105 SVIIVWMASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPH--KLVARAGV  156 (162)
Q Consensus       105 ~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~--~la~~~~I  156 (162)
                      .+++.||++||++|....+.+.++.+++. .++.++.++.|....  .+++++++
T Consensus        32 vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~   86 (153)
T d1xvwa1          32 VLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGF   86 (153)
T ss_dssp             EEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTC
T ss_pred             EEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhcc
Confidence            45555569999999999999999999984 469999998865422  14444444

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.90  E-value=8e-06  Score=57.67  Aligned_cols=46  Identities=9%  Similarity=0.135  Sum_probs=40.6

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCCh
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVP  147 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~  147 (162)
                      .|+++|+.|| +.||+.|....+.|.++.+++ +.++.++.|+.|...
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~   72 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHF   72 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHH
T ss_pred             CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHH
Confidence            4899999999 999999999999999999998 457999999987643

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.88  E-value=7.4e-06  Score=57.99  Aligned_cols=45  Identities=7%  Similarity=0.001  Sum_probs=38.3

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      ..|+++||.|| +.||+.|...++.+.+...++ .++.++.|..+..
T Consensus        40 ~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~-~~~~vv~Is~d~~   85 (163)
T d1psqa_          40 FDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLP   85 (163)
T ss_dssp             GTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCH
T ss_pred             hCCcEEEEEeccccccccchhhHHHHHHHHHhh-cccceEEEEeccH
Confidence            46889999999 789999999999999888887 5788999988744

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.74  E-value=1.5e-05  Score=56.92  Aligned_cols=44  Identities=14%  Similarity=0.279  Sum_probs=38.5

Q ss_pred             CCeEEEEEe-cCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCC
Q 031285          103 DESVIIVWM-ASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAV  146 (162)
Q Consensus       103 ~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~  146 (162)
                      ++++|+.|| +.||+.|....+.|++..+++ +.++.++.|+.+..
T Consensus        33 k~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~   78 (170)
T d1zofa1          33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSE   78 (170)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCH
T ss_pred             CCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccch
Confidence            457999999 999999999999999999998 45799999998754

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=1.9e-05  Score=56.02  Aligned_cols=44  Identities=14%  Similarity=0.040  Sum_probs=35.2

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      .+|+++|+.|| +.||+.|...++.|++..+++  ++.++.|..+..
T Consensus        41 ~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~--g~~vv~Is~d~~   85 (166)
T d1xvqa_          41 FRGKSVLLNIFPSVDTPVCATSVRTFDERAAAS--GATVLCVSKDLP   85 (166)
T ss_dssp             GTTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT--TCEEEEEESSCH
T ss_pred             hCCcEEEEEeeecccccccHHHHHHHhhhcccc--cccccccccchH
Confidence            36889999999 558888999999998877765  578888887654

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.68  E-value=2.7e-05  Score=58.67  Aligned_cols=45  Identities=9%  Similarity=0.171  Sum_probs=40.2

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~  145 (162)
                      .+|+.+|+.|| +.||+.|....+.|.++.+++. .++.++.|++|.
T Consensus        27 ~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds   73 (237)
T d2zcta1          27 SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDS   73 (237)
T ss_dssp             TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             cCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCc
Confidence            57899999999 9999999999999999999993 469999999875

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=97.62  E-value=3.8e-05  Score=54.32  Aligned_cols=45  Identities=9%  Similarity=0.032  Sum_probs=38.0

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~  146 (162)
                      ..||++|+.|| +.||+.|...++.|++..+++ .++.++.|..|..
T Consensus        40 ~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~-~~~~vi~iS~d~~   85 (164)
T d1q98a_          40 FASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLP   85 (164)
T ss_dssp             GTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCH
T ss_pred             hCCcEEEEEecCccccCcccHHHHHHHHHHHHh-ccceEEeecCCcH
Confidence            35889999999 558888999999999999999 5789999988643

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.51  E-value=7.5e-05  Score=54.12  Aligned_cols=54  Identities=6%  Similarity=0.004  Sum_probs=43.9

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCChH--HHHHHc
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAVPH--KLVARA  154 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~--~la~~~  154 (162)
                      ..|+.+|++|| +.||+.|..+.+.|++..+++. .++.++.|+.|....  .+++++
T Consensus        28 ~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~   85 (186)
T d1n8ja_          28 TEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSS   85 (186)
T ss_dssp             HTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHC
T ss_pred             hCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccc
Confidence            35899999999 8999999999999999999984 579999999876532  245554

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=9.1e-05  Score=45.68  Aligned_cols=50  Identities=20%  Similarity=0.386  Sum_probs=37.1

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHH--HHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHK--LVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~--la~~~~I~~~Pti  162 (162)
                      |+.|..+||+.|......|+    +.  ++.+..+|++.+++.  ..+..|.+.+|.|
T Consensus         3 i~iYs~~~C~~C~~ak~~L~----~~--~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i   54 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAME----NR--GFDFEMINVDRVPEAAEALRAQGFRQLPVV   54 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHH----HT--TCCCEEEETTTCHHHHHHHHHTTCCSSCEE
T ss_pred             EEEEeCCCCccHHHHHHHHH----hc--CceeEEEeecCCHHHHHHHHhcCCCCCCEE
Confidence            56688999999998875554    33  577778899888762  3356789999974

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00019  Score=53.22  Aligned_cols=63  Identities=13%  Similarity=0.214  Sum_probs=47.1

Q ss_pred             CCcCceecCCHHHHHHHHHHHhcCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285           79 VSIPLTPIGSESQFDRVIAEAQQLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus        79 ~~~~~~~i~~~~~f~~~l~~~~~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      +.+++....+.-.+.+.+     .++++|+.|| +.||+.|..+...|++..++++ .++.++.|.+|..
T Consensus         8 PdF~l~~~~G~v~Lsd~~-----g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~   72 (220)
T d1prxa_           8 PNFEANTTVGRIRFHDFL-----GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSV   72 (220)
T ss_dssp             CCCEEEETTEEEEHHHHH-----TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCH
T ss_pred             CCcEeecCCCCEEeHHHc-----CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccc
Confidence            444444444333455555     4578888888 8899999999999999999994 4699999988753

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.36  E-value=0.00012  Score=44.80  Aligned_cols=50  Identities=20%  Similarity=0.366  Sum_probs=37.3

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH--HHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH--KLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~--~la~~~~I~~~Pti  162 (162)
                      |+.|..+||+.|......|+    ++  ++.+..+|++.+++  +..+++|.+.+|.|
T Consensus         3 v~iYt~~~C~~C~~ak~~L~----~~--~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i   54 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALD----RA--GLAYNTVDISLDDEARDYVMALGYVQAPVV   54 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHH----HT--TCCCEEEETTTCHHHHHHHHHTTCBCCCEE
T ss_pred             EEEEeCCCChhHHHHHHHHH----Hc--CCceEEEEccCCHHHHHHHHHhCCCCcCEE
Confidence            56788999999998875554    33  56777788887764  24567899999974

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=3.6e-05  Score=53.88  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=27.4

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHH
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAAD  131 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~  131 (162)
                      .+.+.+|+.|.-+-|+.|+++.|.++++.+.
T Consensus        24 ~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~   54 (156)
T d1eeja1          24 PQEKHVITVFTDITCGYCHKLHEQMADYNAL   54 (156)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTTHHHHHHT
T ss_pred             CCCCEEEEEEeCCCCHHHHHHHHHHHHhhcc
Confidence            4578899999999999999999999998654

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00025  Score=48.40  Aligned_cols=32  Identities=16%  Similarity=0.261  Sum_probs=28.1

Q ss_pred             cCCCeEEEEEecCCCh-hhhhhhHhHHHHHHHh
Q 031285          101 QLDESVIIVWMASWCR-KCIYLKPKLEKLAADY  132 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~-~C~~~~p~l~~l~~~~  132 (162)
                      -+||++||+||.+||+ .|....+.+.++.+++
T Consensus        18 ~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~   50 (160)
T d1wp0a1          18 YLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEI   50 (160)
T ss_dssp             GTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHH
T ss_pred             hCCCEEEEEEECCCCccccccchHHHHHHHHHh
Confidence            4699999999999996 7988999998888876

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.27  E-value=4.8e-05  Score=53.00  Aligned_cols=38  Identities=21%  Similarity=0.401  Sum_probs=30.5

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEE
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFY  139 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~  139 (162)
                      .+.+.+|+.|.-+-||.|+++.+.++++.+.. ..+.++
T Consensus        24 ~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~-~~v~~~   61 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHYCHLLHQQLKEYNDLG-ITVRYL   61 (150)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTTHHHHHHTT-EEEEEE
T ss_pred             CCCCEEEEEEECCCCHHHHHHhHHHHHHhccC-ceEEEE
Confidence            45777899999999999999999999998654 334443

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=97.26  E-value=0.00014  Score=51.64  Aligned_cols=44  Identities=11%  Similarity=0.234  Sum_probs=38.6

Q ss_pred             CCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          103 DESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       103 ~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      ++++||.|| +.||+.|......|++..+++. .++.++.|+.|..
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~   72 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSK   72 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCH
T ss_pred             CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcH
Confidence            478999999 9999999999999999999984 5799999998743

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00019  Score=50.72  Aligned_cols=40  Identities=10%  Similarity=0.233  Sum_probs=32.7

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV  143 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~  143 (162)
                      ..+.+|+.|.-+-|++|+++.+.++++.++.  ++++..+++
T Consensus        35 ~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~--~v~v~~~~~   74 (169)
T d1v58a1          35 DAPVIVYVFADPFCPYCKQFWQQARPWVDSG--KVQLRTLLV   74 (169)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHTT--SEEEEEEEC
T ss_pred             CCCEEEEEEECCCCcchHHHHHHHHHHHhcc--ceeEEEEec
Confidence            4556789999999999999999999988764  677776664

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.22  E-value=8.1e-05  Score=48.89  Aligned_cols=59  Identities=17%  Similarity=0.274  Sum_probs=40.6

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHH----HHHHcCCcccccC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHK----LVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~----la~~~~I~~~Pti  162 (162)
                      .+++  ||.|..+||+.|......|+++.-.+ ..+.+..+|.+.....    +.+..|...+|.|
T Consensus        10 ~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~-~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqI   72 (105)
T d1ktea_          10 QPGK--VVVFIKPTCPFCRKTQELLSQLPFKE-GLLEFVDITATSDTNEIQDYLQQLTGARTVPRV   72 (105)
T ss_dssp             CTTC--EEEEECSSCHHHHHHHHHHHHSCBCT-TSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE
T ss_pred             ccCC--EEEEECCCCchHHHHHHHHHHhCCcc-ceeeeeecccccccHHHHHHHhhccCCCcCcEE
Confidence            4444  55689999999999987776655444 4577878887776532    3344577888864

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00034  Score=50.91  Aligned_cols=46  Identities=13%  Similarity=0.174  Sum_probs=40.8

Q ss_pred             cCCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          101 QLDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       101 ~~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      ..|+.+|+.|| +.||+.|..+...|.+..++++ .++.++.|+.|..
T Consensus        32 ~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~   79 (197)
T d1qmva_          32 YKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQ   79 (197)
T ss_dssp             GTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCH
T ss_pred             hCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCH
Confidence            35899999999 9999999999999999999994 4799999998754

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=8.3e-05  Score=46.86  Aligned_cols=55  Identities=25%  Similarity=0.352  Sum_probs=41.5

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCCh---HHHHHHc--CCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVP---HKLVARA--GVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~la~~~--~I~~~Pti  162 (162)
                      +|.|..+||+.|.+....|+++..++ ..+.+..+|++..+   +.+.+..  +++.+|.|
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqI   62 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNER-DDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI   62 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHH-SSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCC-CCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEE
Confidence            56789999999999999999999998 67888888875443   2254443  35678864

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.03  E-value=0.00069  Score=41.80  Aligned_cols=49  Identities=16%  Similarity=0.240  Sum_probs=37.2

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      |..|..++|+.|......+   .+.  ..+.+..+|++++++ +.++|+.+ +|.|
T Consensus         2 ltLyt~~~C~LCe~A~~~l---~~~--~~~~~~~vdI~~d~~-l~~~y~~~-IPVl   50 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEAL---AQA--RAGAFFSVFIDDDAA-LESAYGLR-VPVL   50 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHH---HHT--TCCCEEEEECTTCHH-HHHHHTTT-CSEE
T ss_pred             EEEECCCCccHHHHHHHHH---Hhc--cCCcEEEEEccCCHH-HHHHhCCe-eeEE
Confidence            5678899999998764333   222  357889999999988 99999977 6753

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.97  E-value=0.00061  Score=41.46  Aligned_cols=50  Identities=20%  Similarity=0.217  Sum_probs=33.9

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC--hHHHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV--PHKLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--~~~la~~~~I~~~Pti  162 (162)
                      |+.|+.+||+.|++....|+    +.  ++.+..+|++.+  .+.+.+..+...+|.|
T Consensus         7 I~iYs~~~C~~C~~ak~lL~----~~--~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i   58 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLH----DK--GLSFEEIILGHDATIVSVRAVSGRTTVPQV   58 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHH----HH--TCCCEEEETTTTCCHHHHHHHTCCSSSCEE
T ss_pred             EEEEECCCCHHHHHHHHHHH----Hc--CCCeEEEEccCcHHHHHHHHHhCCccCCEE
Confidence            46689999999999875554    33  345555565544  3436667788888864

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.75  E-value=0.0012  Score=40.93  Aligned_cols=50  Identities=16%  Similarity=0.336  Sum_probs=35.4

Q ss_pred             EEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285          107 IIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus       107 lV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      |..|..+||+.|.+....|    +++  ++.+..+|++.+++   .+.+..|...+|.|
T Consensus         3 I~iys~~~Cp~C~~ak~~L----~~~--~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i   55 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALL----SSK--GVSFQELPIDGNAAKREEMIKRSGRTTVPQI   55 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHH----HHH--TCCCEEEECTTCSHHHHHHHHHHSSCCSCEE
T ss_pred             EEEEeCCCCHhHHHHHHHH----HHc--CCCeEEEeccchHHHHHHHHHHhCCCCCCeE
Confidence            4568899999999876554    444  46677788887754   24566688888864

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=96.71  E-value=0.0012  Score=44.46  Aligned_cols=68  Identities=10%  Similarity=0.102  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCc--cccc
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVM--VSLM  161 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~--~~Pt  161 (162)
                      +.+++....    +.+++.++.|+.+- .....+...+.++|++|.+++.|+.+|.+.... ..+.||+.  ..|.
T Consensus        12 ~~~n~~~~~----~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~-~l~~~gl~~~~~P~   81 (133)
T d2djka1          12 GPETYSDYM----SAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGA-HAGNLNLKTDKFPA   81 (133)
T ss_dssp             CHHHHHHHH----HTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGG-GTTTTTCCSSSSSE
T ss_pred             ChhhHHHHh----cCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHH-HHHHhcCCcccCCc
Confidence            577888888    77889888888654 356788899999999998899999999998877 78888883  4453

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.69  E-value=0.0017  Score=40.25  Aligned_cols=51  Identities=14%  Similarity=0.281  Sum_probs=40.4

Q ss_pred             EEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          108 IVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       108 V~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      |...++.|..|.++....++.+++++-...+.++  ++..+ ++ +|||.++|.+
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~e-i~-~ygVmstPal   54 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQ-IL-EAGLTALPGL   54 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHH-HH-HHTCSSSSCE
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CCHHH-HH-HcCCcCCCEE
Confidence            4455899999999999999999998656777666  44445 65 6999999974

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.0016  Score=43.69  Aligned_cols=65  Identities=12%  Similarity=0.125  Sum_probs=54.4

Q ss_pred             CHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcc
Q 031285           88 SESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMV  158 (162)
Q Consensus        88 ~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~  158 (162)
                      +.+++...+    +.+.|+++.|+.+-= .-......+.++|++|.+++.|+.+|.+.... .++.||+..
T Consensus         6 ~~~~~~~y~----~~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~-~l~~fgl~e   70 (125)
T d2b5ea3           6 DGSVFAQYV----ESGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGLMNFVSIDARKFGR-HAGNLNMKE   70 (125)
T ss_dssp             CHHHHHHHH----HTTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTT-HHHHTTCCS
T ss_pred             CHHHHHHHH----hcCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcCeeEEEEEchHHhHH-HHHHcCCCc
Confidence            557888888    789999999998653 34578889999999998899999999998877 889999854

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=96.52  E-value=0.0022  Score=44.37  Aligned_cols=43  Identities=16%  Similarity=0.397  Sum_probs=36.9

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEEC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDV  143 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~  143 (162)
                      ..+++.||.|..--|++|+.+.+.+.++.+++.+++.+....+
T Consensus        16 ~~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~   58 (181)
T d1beda_          16 ASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHV   58 (181)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEEC
T ss_pred             CCCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEec
Confidence            4578899999999999999999999999999966777766655

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=96.26  E-value=0.0031  Score=46.42  Aligned_cols=45  Identities=13%  Similarity=0.194  Sum_probs=40.3

Q ss_pred             CCCeEEEEEe-cCCChhhhhhhHhHHHHHHHhC-CCeEEEEEECCCC
Q 031285          102 LDESVIIVWM-ASWCRKCIYLKPKLEKLAADYH-PRLRFYNVDVNAV  146 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~  146 (162)
                      .++.+|+.|| +.||+.|..+...|.+..+++. .+++++.|..|..
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~   75 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSK   75 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccH
Confidence            6899999999 9999999999999999999994 4799999998754

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.26  E-value=0.0037  Score=41.78  Aligned_cols=60  Identities=18%  Similarity=0.277  Sum_probs=46.8

Q ss_pred             cCCCeEEEEEec--CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCC--hHHHHHHcCCcccccC
Q 031285          101 QLDESVIIVWMA--SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAV--PHKLVARAGVMVSLMI  162 (162)
Q Consensus       101 ~~~~~vlV~F~a--~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--~~~la~~~~I~~~Pti  162 (162)
                      .-.++|-+.++.  .-|+.|..+...++++++-. +++.+...+.+..  .+ ++++|+|+..|++
T Consensus        19 ~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lS-dki~~~~~~~~~~e~~~-~~~~~~ver~Ps~   82 (119)
T d1a8la1          19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELT-DKLSYEIVDFDTPEGKE-LAKRYRIDRAPAT   82 (119)
T ss_dssp             GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC-TTEEEEEEETTSHHHHH-HHHHTTCCSSSEE
T ss_pred             hCCCCEEEEEEecCCCchhHHHHHHHHHHHHhhC-CCeEEEEeccCcchhhh-HHHhhccccCceE
Confidence            345666555554  56999999999999998776 7888888877754  45 8999999999974

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0067  Score=40.74  Aligned_cols=44  Identities=18%  Similarity=0.044  Sum_probs=27.9

Q ss_pred             cCCCeEEEEEecCCChhhh-hhhHhHHHHHHHh----CCCeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCI-YLKPKLEKLAADY----HPRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~-~~~p~l~~l~~~~----~~~v~~~~vd~d  144 (162)
                      .+||++||+||.+||+.|. .....+..+.+.+    ...+.+..+..+
T Consensus        24 ~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (169)
T d2b7ka1          24 LLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCD   72 (169)
T ss_dssp             GTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESC
T ss_pred             HCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccc
Confidence            4699999999999997654 4444444444333    334555555544

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.01  E-value=0.009  Score=40.89  Aligned_cols=44  Identities=14%  Similarity=0.092  Sum_probs=35.4

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHHHhC--CCeEEEEEECC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAADYH--PRLRFYNVDVN  144 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d  144 (162)
                      ...+..|+.|+...|++|+.+.+.+.++.+++.  ..+.++.....
T Consensus        22 ~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (172)
T d1z6ma1          22 SNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   67 (172)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeecccc
Confidence            446678999999999999999999999999883  35666666553

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0013  Score=47.59  Aligned_cols=43  Identities=12%  Similarity=0.356  Sum_probs=35.0

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHH---HHHHHhCCCeEEEEEECC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLE---KLAADYHPRLRFYNVDVN  144 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~---~l~~~~~~~v~~~~vd~d  144 (162)
                      .+++.|+.|+.-+|++|+.+.|.++   ++.+.+++++.|....+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence            4678899999999999999999875   666677667888777664

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.0068  Score=42.16  Aligned_cols=45  Identities=11%  Similarity=0.264  Sum_probs=33.8

Q ss_pred             cCCCeEEEEEecCCChhhhhhhHhHHHHHH---HhCCCeEEEEEECCC
Q 031285          101 QLDESVIIVWMASWCRKCIYLKPKLEKLAA---DYHPRLRFYNVDVNA  145 (162)
Q Consensus       101 ~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~---~~~~~v~~~~vd~d~  145 (162)
                      ..+.++||.|+.-.|++|+.+.+.+..+.+   .+.+++.+....+..
T Consensus        16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   63 (188)
T d1fvka_          16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNF   63 (188)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECSS
T ss_pred             CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecCc
Confidence            346778999999999999999998855544   334567887777653

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.12  Score=35.15  Aligned_cols=43  Identities=12%  Similarity=0.108  Sum_probs=30.5

Q ss_pred             CCCeEEEEEe-cCCChhh-hhhhHhHHHHHHHh-CCC-eEEEEEECC
Q 031285          102 LDESVIIVWM-ASWCRKC-IYLKPKLEKLAADY-HPR-LRFYNVDVN  144 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C-~~~~p~l~~l~~~~-~~~-v~~~~vd~d  144 (162)
                      +++.+|+.|| +.|++.| ....+.+.+..+++ +.+ ..++.+.++
T Consensus        30 ~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~   76 (161)
T d1hd2a_          30 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVN   76 (161)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS
T ss_pred             CCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecC
Confidence            6888999999 8999999 56788888777665 223 344445443

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.68  E-value=0.15  Score=32.76  Aligned_cols=60  Identities=12%  Similarity=0.116  Sum_probs=37.5

Q ss_pred             HHHHHHHHHhcCCCeEEEEEec-----CCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChH---HHHHHcCCcccccC
Q 031285           91 QFDRVIAEAQQLDESVIIVWMA-----SWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPH---KLVARAGVMVSLMI  162 (162)
Q Consensus        91 ~f~~~l~~~~~~~~~vlV~F~a-----~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~la~~~~I~~~Pti  162 (162)
                      .++.++    + ..+||| |.-     |.|+.|++....|    +++  ++.+..+|++..++   .+.+..+...+|.|
T Consensus         7 ~i~~~i----~-~~~Vvv-F~Kgt~~~p~Cp~c~~ak~lL----~~~--~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqI   74 (109)
T d1wika_           7 GLKVLT----N-KASVML-FMKGNKQEAKCGFSKQILEIL----NST--GVEYETFDILEDEEVRQGLKTFSNWPTYPQL   74 (109)
T ss_dssp             CHHHHH----T-TSSEEE-EESSTTTCCCSSTHHHHHHHH----HHT--CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred             HHHHHH----h-cCCEEE-EeCCCCCCCCChHHHHHHHHH----Hhc--CCCceEEEecccHHHHHHHHHhcCCCCCCeE
Confidence            356666    3 344444 532     8899999987555    444  46677788887764   14445666777753

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=91.67  E-value=0.34  Score=31.09  Aligned_cols=59  Identities=10%  Similarity=0.187  Sum_probs=42.7

Q ss_pred             CCeEEEEEecCCChhhhhhhHhHHHHHHHhC-C-CeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          103 DESVIIVWMASWCRKCIYLKPKLEKLAADYH-P-RLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       103 ~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~-~-~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      .+...+..|.+.-+......-.+.++.+++. + .+.+--||+.++++ +|+.++|-.+||+
T Consensus        10 ~~~l~L~LfV~g~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPe-laE~~~IvATPtL   70 (105)
T d1t4za_          10 AQPLLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQ-LVEYYRLVVTPAL   70 (105)
T ss_dssp             CCCEEEEEEECSCHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHH-HHHHTTCCSSSEE
T ss_pred             CCCeEEEEEEcCCcchHHHHHHHHHHHHHhcCCCceEEEEeecccCHh-HHhhCCEEeccHh
Confidence            4444555555554555555556666777663 3 58999999999999 9999999999984

>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Circadian oscillation regulator KaiB
species: Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]

Probab=91.30  E-value=0.072  Score=33.46  Aligned_cols=56  Identities=13%  Similarity=0.197  Sum_probs=46.4

Q ss_pred             EEEEEecCCChhhhhhhHhHHHHHHHh-CCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285          106 VIIVWMASWCRKCIYLKPKLEKLAADY-HPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus       106 vlV~F~a~WC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ++-.|-|.--+........+.++.+++ ++.+.+--||+.++++ +|+.++|-.+||+
T Consensus         3 ~L~LyVaG~tp~S~~ai~nl~~i~e~~l~~~y~LeVIDv~~qP~-lAe~~~IvATPtL   59 (90)
T d1r5pa_           3 VLKLYVAGNTPNSVRALKTLKNILEQEFQGIYALKVIDVLKNPQ-LAEEDKILATPTL   59 (90)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTSCS-CCTTCCEECHHHH
T ss_pred             EEEEEEcCCChhHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh-HHhhCCEEeehHH
Confidence            455566777777888778888888877 6679999999999999 9999999999974

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=89.02  E-value=0.52  Score=31.82  Aligned_cols=44  Identities=16%  Similarity=0.281  Sum_probs=30.6

Q ss_pred             CCCeEEEEEe-cCCChhh-hhhhHhHHHHHHHh--CCCeEEEEEECCC
Q 031285          102 LDESVIIVWM-ASWCRKC-IYLKPKLEKLAADY--HPRLRFYNVDVNA  145 (162)
Q Consensus       102 ~~~~vlV~F~-a~WC~~C-~~~~p~l~~l~~~~--~~~v~~~~vd~d~  145 (162)
                      +++.||+.|| +.|++.| ....+.+.+..+++  .+...++.+.++.
T Consensus        34 ~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd~   81 (162)
T d1tp9a1          34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND   81 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeeccc
Confidence            5788888888 9999999 56777777766654  2334555555543

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=88.87  E-value=0.76  Score=28.99  Aligned_cols=67  Identities=15%  Similarity=0.209  Sum_probs=50.0

Q ss_pred             eecCCHHHHHHHHHHHhc-CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCcccccC
Q 031285           84 TPIGSESQFDRVIAEAQQ-LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLMI  162 (162)
Q Consensus        84 ~~i~~~~~f~~~l~~~~~-~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pti  162 (162)
                      ..|++..++++.+    + .+.++||=|+.+--++   ....|.++++.+.+++.|+..   .+.+ +++++||. .|+|
T Consensus         2 ~~i~~~~e~~~F~----~~~d~v~VvGfF~~~~~~---~~~~F~~~A~~~rd~~~F~~t---~d~~-va~~~~v~-~~~v   69 (102)
T d1a8ya2           2 ELIEGERELQAFE----NIEDEIKLIGYFKNKDSE---HYKAFKEAAEEFHPYIPFFAT---FDSK-VAKKLTLK-LNEI   69 (102)
T ss_dssp             EEECSHHHHHHHT----TCCSSCEEEEECSSTTCH---HHHHHHHHHHHHTTTSCEEEE---CCHH-HHHHHCCC-TTCE
T ss_pred             eeecCHHHHHHHh----ccCCCEEEEEEECCCCcH---HHHHHHHHHHHcCCCceEEEE---CCHH-HHHHcCCC-CCCE
Confidence            4577888899998    4 5678899998764444   456788899988778888654   4566 99999995 4653

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=84.49  E-value=0.81  Score=32.98  Aligned_cols=41  Identities=15%  Similarity=0.221  Sum_probs=32.5

Q ss_pred             CCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECC
Q 031285          102 LDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVN  144 (162)
Q Consensus       102 ~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d  144 (162)
                      .-+.||=.|.+.||..|=.....|++|++.  ++|..+..-+|
T Consensus         4 ~~~aVVElFTSqgCssCPpAd~~L~~L~~~--~~Vi~La~HVd   44 (225)
T d2axoa1           4 AVKGVVELFTSQGCASCPPADEALRKMIQK--GDVVGLSYHVD   44 (225)
T ss_dssp             CCCCEEEEEECTTCTTCHHHHHHHHHHHHH--TSSEEEEEECS
T ss_pred             CCCcEEEEeeCCCCCCCHHHHHHHHHhhCC--CCEEEEEeccc
Confidence            445566678899999999999999999775  67777777665

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.93  E-value=2.3  Score=26.54  Aligned_cols=65  Identities=8%  Similarity=0.045  Sum_probs=48.1

Q ss_pred             eecCCHHHHHHHHHHHhcCCCeEEEEEecCCChhhhhhhHhHHHHHHHhCCCeEEEEEECCCChHHHHHHcCCccccc
Q 031285           84 TPIGSESQFDRVIAEAQQLDESVIIVWMASWCRKCIYLKPKLEKLAADYHPRLRFYNVDVNAVPHKLVARAGVMVSLM  161 (162)
Q Consensus        84 ~~i~~~~~f~~~l~~~~~~~~~vlV~F~a~WC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~la~~~~I~~~Pt  161 (162)
                      ..+.+...++.++    ..+..+||-|+.+--+.   ....|.++++.+ +++.|+.+   ...+ +++++++.. |+
T Consensus         3 ~~l~~~~~~e~f~----~~~~v~VVGfF~~~~~~---~~~~F~~~A~~~-~d~~F~~t---~~~~-v~~~~~v~~-~~   67 (110)
T d1bjxa_           3 TTLPDGAAAESLV----ESSEVAVIGFFKDVESD---SAKQFLQAAEAI-DDIPFGIT---SNSD-VFSKYQLDK-DG   67 (110)
T ss_dssp             EECCSHHHHHHHH----HHSSEEEEEECTTTTSH---HHHHHHHHHHHC-SSSCEEEE---CCSH-HHHHTTCSS-CE
T ss_pred             eEcCCHHHHHHHh----ccCCeEEEEEEcCCCch---HHHHHHHHHHhC-cCceEEEE---CCHH-HHHHcCCCC-Ce
Confidence            4677889999999    67899999998764333   455788999998 66777654   3345 788998865 54