Citrus Sinensis ID: 031290

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRHFLLLSVFRFVIFSSSL
Secondary Structure (PSIPRED)
ccHHHHHHHccccccccccccccccccccHHHHHHcccccccccccccccccccEEEcHHHHHHHHHHHHHccccccccEEEEEEccccccEEEcEEEccccccccEEEEEccEEEEEEcccHHHccccEEEccccccccccEEEccccccEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccEEEcHHHHHHHHHHHHHcccccccEEEEEEEcccccccEEEEEEccccccccEEEEcccEEEEEccccHHHEcccEEEcccccccccEEEEHEEHEHHEEEEEEEccc
Coil and Loop (DISEMBL)
MSRSLIQRLAPYFAARLRQNhrllssspsSAAAALNeassspsssespspsldsihMTDNFIKRMKELQASETSDNKAMLRLGVetggcsgfqyafdldykinpddrifekdGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRHFLLLSVFRFVIFSSSL
Flexible Loop (DISEMBL)
MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEAssspsssespspslDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRHFLLLSVFRFVIFSSSL
Low Complexity Region (SEG)
MSRSLIQRLAPYFAARLRQNHRllssspssaaaalneassspsssespspslDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRHFLLLSVFRFVIFSSSL
Disordered region (IsUnstruct)
*********APYFA****************************************************************MLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRHFLLLSVFRFVIF****
Disordered Region (DISOPRED)
*******RLAPYFAARLR*************************************HMTDNFIKRMKEL********KAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRHFLLLSVFRFVIFSSSL
Disordered Region (DISEMBL)
MSRSLIQRLAPYFAARLRQNHRL*****************************DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRHFLLLSVFRFVIFSSSL
Disordered Region (DISPRO)
**RSLIQRLAPYFAARLRQNHRLLSS*************************LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRHFLLLSVFRFVIFSS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRHFLLLSVFRFVIFSSSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q8LCY2	158	Iron-sulfur assembly prot	yes	no	0.851	0.873	0.645	6e-44
Q2TBG7	152	Iron-sulfur cluster assem	yes	no	0.697	0.743	0.496	2e-24
Q5R788	154	Iron-sulfur cluster assem	yes	no	0.666	0.701	0.486	3e-24
Q86U28	154	Iron-sulfur cluster assem	yes	no	0.660	0.694	0.482	8e-24
Q9DCB8	154	Iron-sulfur cluster assem	yes	no	0.598	0.629	0.490	3e-22
Q2S8Y5	117	Iron-sulfur cluster inser	yes	no	0.580	0.803	0.464	5e-17
Q60AU6	130	Iron-sulfur cluster inser	yes	no	0.586	0.730	0.437	1e-16
A4T031	124	Putative iron--sulfur clu	yes	no	0.660	0.862	0.385	2e-16
A1TYH3	110	Iron-sulfur cluster inser	yes	no	0.555	0.818	0.473	2e-16
Q1QES5	126	Iron-sulfur cluster inser	yes	no	0.635	0.817	0.396	2e-16

>sp|Q8LCY2|ISAM2_ARATH Iron-sulfur assembly protein IscA-like 2, mitochondrial OS=Arabidopsis thaliana GN=At5g03905 PE=2 SV=2

 Score =  176 bits (446), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 93/144 (64%), Positives = 114/144 (79%), Gaps = 6/144 (4%)

Query: 1   MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDN 60
           MSRSL++R+APY A R+R+NHRLL+ S +SA    + +SSS   S S     D +H++DN
Sbjct: 1   MSRSLVKRVAPYLAGRIRENHRLLNFSSASAIKEASSSSSSQPESSSN----DVVHLSDN 56

Query: 61  FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120
            I+RMKELQ+SE    K MLRLGVETGGCSGFQY F+LD + NPDDR+FEK+GVKLVVDN
Sbjct: 57  CIRRMKELQSSEPE--KKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKNGVKLVVDN 114

Query: 121 ISYDFVKGATVDYVEELIRSAFVV 144
           +SYD VKGAT+DY EELIR+AFVV
Sbjct: 115 VSYDLVKGATIDYEEELIRAAFVV 138

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2TBG7|ISCA2_BOVIN Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Bos taurus GN=ISCA2 PE=2 SV=1

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/127 (49%), Positives = 81/127 (63%), Gaps = 14/127 (11%)

Query: 19  QNHRLLSSSPSSAAAALNEAS-SSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNK 77
           Q  RLL++S      AL E S SSP + E        IH+TD+ ++R+ E+     ++  
Sbjct: 19  QRSRLLAAS--RGPRALREVSFSSPEAGEG------QIHLTDSCVQRLLEI-----TEGS 65

Query: 78  AMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEEL 137
             LRL VE GGCSGFQY F LD  INPDDR+FEK G ++VVD+ S  FVKGA VD+ +EL
Sbjct: 66  EFLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEKGGARVVVDSDSLAFVKGAHVDFSQEL 125

Query: 138 IRSAFVV 144
           IRS+F V
Sbjct: 126 IRSSFQV 132

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Bos taurus (taxid: 9913)

>sp|Q5R788|ISCA2_PONAB Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Pongo abelii GN=ISCA2 PE=2 SV=1

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 74/113 (65%), Gaps = 5/113 (4%)

Query: 32  AAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSG 91
           AA+L   +   +SS SP      I +TD+ ++R+ E+     ++    LRL VE GGCSG
Sbjct: 27  AASLGPQARREASSSSPEAGEGQIRLTDSCVQRLLEI-----TEGSEFLRLQVEGGGCSG 81

Query: 92  FQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVV 144
           FQY F LD  INPDDR+FE+ G ++VVD+ S  FVKGA VD+ +ELIRS+F V
Sbjct: 82  FQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQV 134

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Pongo abelii (taxid: 9601)

>sp|Q86U28|ISCA2_HUMAN Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Homo sapiens GN=ISCA2 PE=1 SV=2

 Score =  109 bits (272), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 73/112 (65%), Gaps = 5/112 (4%)

Query: 33  AALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGF 92
           A+L   +   +SS SP      I +TD+ ++R+ E+     ++    LRL VE GGCSGF
Sbjct: 28  ASLGPQARREASSSSPEAGEGQIRLTDSCVQRLLEI-----TEGSEFLRLQVEGGGCSGF 82

Query: 93  QYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVV 144
           QY F LD  INPDDR+FE+ G ++VVD+ S  FVKGA VD+ +ELIRS+F V
Sbjct: 83  QYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQV 134

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Homo sapiens (taxid: 9606)

>sp|Q9DCB8|ISCA2_MOUSE Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Mus musculus GN=Isca2 PE=2 SV=2

 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 68/102 (66%), Gaps = 5/102 (4%)

Query: 43  SSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKI 102
           ++S  P      I +TD+ ++R+ E+     ++    LRL VE GGCSGFQY F LD  I
Sbjct: 38  TTSSIPEAGEGQIRLTDSCVQRLLEI-----TEGSEFLRLQVEGGGCSGFQYKFSLDTVI 92

Query: 103 NPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVV 144
           NPDDR+FE+ G ++VVD+ S  FVKGA VD+ +ELIRS+F V
Sbjct: 93  NPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQV 134

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Mus musculus (taxid: 10090)

>sp|Q2S8Y5|ERPA_HAHCH Iron-sulfur cluster insertion protein ErpA OS=Hahella chejuensis (strain KCTC 2396) GN=erpA PE=3 SV=1

 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 63/99 (63%), Gaps = 5/99 (5%)

Query: 48  PSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDR 107
           P+P    I  TDN   ++K L   E +D +  LR+ V  GGCSGFQY F  D  +N DD 
Sbjct: 9   PTP----IIFTDNAAAKVKSLIEDEGND-ELSLRVFVTGGGCSGFQYGFSFDEAVNEDDT 63

Query: 108 IFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRH 146
           I EKDGV+LVVD++SY ++ GA VD+ E L  + FV+++
Sbjct: 64  IVEKDGVRLVVDSLSYQYLVGAEVDFREGLEGAQFVIKN 102

Required for insertion of 4Fe-4S clusters for at least IspG.

Hahella chejuensis (strain KCTC 2396) (taxid: 349521)

>sp|Q60AU6|ERPA2_METCA Iron-sulfur cluster insertion protein ErpA 2 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=erpA2 PE=3 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 61/96 (63%), Gaps = 1/96 (1%)

Query: 51  SLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFE 110
           S ++I  TD+  +R+ EL A E  D    LR+ V  GGCSGFQY F  D  +N DD + E
Sbjct: 21  SAETIKFTDSAAQRVSELLAEE-GDQNLKLRVYVTGGGCSGFQYGFTFDEVVNEDDTVVE 79

Query: 111 KDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRH 146
           K+GV ++VD +S  +++GA +DY E +  S FV+R+
Sbjct: 80  KNGVSVLVDPMSLQYLQGAEIDYTENVSGSQFVIRN 115

Required for insertion of 4Fe-4S clusters for at least IspG.

Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233)

>sp|A4T031|ERPA_POLSQ Putative iron--sulfur cluster insertion protein ErpA OS=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) GN=erpA PE=3 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 72/114 (63%), Gaps = 7/114 (6%)

Query: 35  LNEASSSPSS--SESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGF 92
           + E ++ P+   +E P P    +  TDN   ++ +L A E  + +  LR+ V+ GGCSGF
Sbjct: 1   MTELATQPAQDLAEPPIP----LVFTDNAAAKVADLIAEE-GNPELKLRVFVQGGGCSGF 55

Query: 93  QYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRH 146
           QY F  D  +N DD +FEK+GV L+VD++S+ ++ GA +DY E++  S FV+++
Sbjct: 56  QYGFTFDDAVNEDDTLFEKNGVTLLVDSMSFQYLVGAEIDYKEDINGSQFVIKN 109

Required for insertion of 4Fe-4S clusters.

Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) (taxid: 312153)

>sp|A1TYH3|ERPA_MARAV Iron-sulfur cluster insertion protein ErpA OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=erpA PE=3 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 3/93 (3%)

Query: 55  IHMTDNFIKRMKEL-QASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           +  TDN + +++EL +  E  D K  LR+ V  GGCSGFQY F  D     DD + E+DG
Sbjct: 5   LFFTDNAVAKVRELIEEEENPDLK--LRVFVTGGGCSGFQYGFSFDESQEEDDTVIERDG 62

Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVRH 146
           VKL+VD++SY ++ GAT+DY E L  S FVV++
Sbjct: 63  VKLLVDSMSYQYLVGATIDYQEGLQGSQFVVQN 95

Required for insertion of 4Fe-4S clusters for at least IspG.

Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348)

>sp|Q1QES5|ERPA_PSYCK Iron-sulfur cluster insertion protein ErpA OS=Psychrobacter cryohalolentis (strain K5) GN=erpA PE=3 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 71/106 (66%), Gaps = 3/106 (2%)

Query: 41  SPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDY 100
           +PSSS+   P++  +++TD+  ++++ L+  E  D+  MLR+ V  GGCSGF Y F+   
Sbjct: 9   NPSSSQPVDPTV--LNLTDSAAQKVRRLREEE-GDSNLMLRVYVTGGGCSGFSYGFNFAN 65

Query: 101 KINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRH 146
           ++N DD  F+ + V LVVD++SY +++G+TVDY E L  + F+V +
Sbjct: 66  ELNEDDANFDNNDVTLVVDSLSYQYLQGSTVDYTEGLEGARFIVTN 111

Required for insertion of 4Fe-4S clusters for at least IspG.

Psychrobacter cryohalolentis (strain K5) (taxid: 335284)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
224087407	153	predicted protein [Populus trichocarpa]	0.790	0.836	0.657	2e-45
449459108	155	PREDICTED: iron-sulfur assembly protein	0.814	0.851	0.676	6e-44
297806359	158	hypothetical protein ARALYDRAFT_908267 [	0.851	0.873	0.673	2e-43
449470384	157	PREDICTED: iron-sulfur assembly protein	0.827	0.853	0.654	4e-43
388499000	161	unknown [Lotus japonicus]	0.845	0.850	0.659	3e-42
18414394	158	Iron-sulfur assembly protein IscA-like 2	0.851	0.873	0.645	3e-42
7406400	757	putative protein [Arabidopsis thaliana]	0.851	0.182	0.645	5e-42
388513365	153	unknown [Lotus japonicus]	0.808	0.856	0.626	6e-42
357511065	160	Iron-sulfur assembly protein IscA-like p	0.858	0.868	0.613	6e-42
21592451	158	unknown [Arabidopsis thaliana]	0.851	0.873	0.638	8e-42

>gi|224087407|ref|XP_002308154.1| predicted protein [Populus trichocarpa] gi|118489149|gb|ABK96381.1| unknown [Populus trichocarpa x Populus deltoides] gi|222854130|gb|EEE91677.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/143 (65%), Positives = 108/143 (75%), Gaps = 15/143 (10%)

Query: 2   SRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNF 61
           S SLI+R+ P F + +RQNHRLLSSS      AL EAS+            DSIH+TDN 
Sbjct: 6   SSSLIKRVTPLFTSWIRQNHRLLSSS------ALREASTLVD---------DSIHLTDNC 50

Query: 62  IKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNI 121
           I+R+KELQ SE S    MLRLGVETGGCSGFQY FDLD K NPDDR+FE +GV+LVVDNI
Sbjct: 51  IRRLKELQTSEGSAKDKMLRLGVETGGCSGFQYVFDLDDKTNPDDRVFETEGVRLVVDNI 110

Query: 122 SYDFVKGATVDYVEELIRSAFVV 144
           SYDF+KGATVDYVEELIR+AF+V
Sbjct: 111 SYDFLKGATVDYVEELIRAAFIV 133

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459108|ref|XP_004147288.1| PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial-like [Cucumis sativus]

 Score =  182 bits (461), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 96/142 (67%), Positives = 109/142 (76%), Gaps = 10/142 (7%)

Query: 3   RSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFI 62
           R LIQRL PY  A +R+N RLLSSS S    A  EASSS  +   PS  +D+IHM+DN I
Sbjct: 4   RFLIQRLTPYLGAHIRKNQRLLSSSVS----AYQEASSSLIT---PSAGIDTIHMSDNCI 56

Query: 63  KRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNIS 122
           +RMKELQ  E  + K MLRL VE GGCSGFQY F+LD K NPDDR+ EK+GVKLVVDNIS
Sbjct: 57  RRMKELQ--EPMEEK-MLRLSVENGGCSGFQYVFNLDDKTNPDDRVCEKEGVKLVVDNIS 113

Query: 123 YDFVKGATVDYVEELIRSAFVV 144
           YDFVKGAT+DYVEELIRSAF+V
Sbjct: 114 YDFVKGATIDYVEELIRSAFIV 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806359|ref|XP_002871063.1| hypothetical protein ARALYDRAFT_908267 [Arabidopsis lyrata subsp. lyrata] gi|297316900|gb|EFH47322.1| hypothetical protein ARALYDRAFT_908267 [Arabidopsis lyrata subsp. lyrata]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/144 (67%), Positives = 119/144 (82%), Gaps = 6/144 (4%)

Query: 1   MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDN 60
           MSRSL++R+APY   R+R+NHRLL+ S +SA       +SS SSS+S S S+D +H++DN
Sbjct: 1   MSRSLVKRVAPYLVGRIRENHRLLNFSSASALKE----ASSSSSSQSESSSIDVVHLSDN 56

Query: 61  FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120
            I+RMKELQ+SE    K +LRLGVETGGCSGFQY F+LD + NPDDR+FEK+GVKLVVDN
Sbjct: 57  CIRRMKELQSSEPE--KKLLRLGVETGGCSGFQYVFELDNRTNPDDRVFEKNGVKLVVDN 114

Query: 121 ISYDFVKGATVDYVEELIRSAFVV 144
           +SYDFVKGATVDYVEELIR+AFVV
Sbjct: 115 VSYDFVKGATVDYVEELIRAAFVV 138

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470384|ref|XP_004152897.1| PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial-like [Cucumis sativus] gi|449505888|ref|XP_004162595.1| PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial-like [Cucumis sativus]

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 109/142 (76%), Gaps = 8/142 (5%)

Query: 3   RSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFI 62
           RSLIQR+ PY  AR+++N RLLSSS    A+A  EA     S    +  +D+IHMTD+ I
Sbjct: 4   RSLIQRVTPYLVARIKENQRLLSSS----ASAYQEALPLSPSPSPSA-PVDTIHMTDSCI 58

Query: 63  KRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNIS 122
           +RMKELQ  +    + MLRL VETGGCSGFQY F+LD K NPDDRI+EK+GVKLVVDNIS
Sbjct: 59  RRMKELQDPK---EEKMLRLSVETGGCSGFQYVFNLDGKTNPDDRIYEKEGVKLVVDNIS 115

Query: 123 YDFVKGATVDYVEELIRSAFVV 144
           YDFVKGAT+DYVEELIRSAFVV
Sbjct: 116 YDFVKGATIDYVEELIRSAFVV 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499000|gb|AFK37566.1| unknown [Lotus japonicus]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/141 (65%), Positives = 114/141 (80%), Gaps = 4/141 (2%)

Query: 4   SLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIK 63
           SL +RLAP  AAR RQN +L S S SS+++ L++A++S SSS    P    +HMT+N ++
Sbjct: 5   SLFRRLAPSLAARFRQNQKLTSFSSSSSSSVLHDATTSSSSSSHVEP----VHMTENCLR 60

Query: 64  RMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISY 123
           RMKEL+ASE++     LRL VETGGCSGFQYAFDLD +IN DDR+FE++G+KLVVDNISY
Sbjct: 61  RMKELEASESATAPKTLRLSVETGGCSGFQYAFDLDDRINSDDRVFEREGIKLVVDNISY 120

Query: 124 DFVKGATVDYVEELIRSAFVV 144
           DFVKGATVDYVEELIRSAFVV
Sbjct: 121 DFVKGATVDYVEELIRSAFVV 141

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414394|ref|NP_568130.1| Iron-sulfur assembly protein IscA-like 2 [Arabidopsis thaliana] gi|88909164|sp|Q8LCY2.2|ISAM2_ARATH RecName: Full=Iron-sulfur assembly protein IscA-like 2, mitochondrial; Flags: Precursor gi|9758020|dbj|BAB08617.1| unnamed protein product [Arabidopsis thaliana] gi|62318546|dbj|BAD94909.1| hypothetical protein [Arabidopsis thaliana] gi|332003287|gb|AED90670.1| Iron-sulfur assembly protein IscA-like 2 [Arabidopsis thaliana]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/144 (64%), Positives = 114/144 (79%), Gaps = 6/144 (4%)

Query: 1   MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDN 60
           MSRSL++R+APY A R+R+NHRLL+ S +SA    + +SSS   S S     D +H++DN
Sbjct: 1   MSRSLVKRVAPYLAGRIRENHRLLNFSSASAIKEASSSSSSQPESSSN----DVVHLSDN 56

Query: 61  FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120
            I+RMKELQ+SE    K MLRLGVETGGCSGFQY F+LD + NPDDR+FEK+GVKLVVDN
Sbjct: 57  CIRRMKELQSSEPE--KKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKNGVKLVVDN 114

Query: 121 ISYDFVKGATVDYVEELIRSAFVV 144
           +SYD VKGAT+DY EELIR+AFVV
Sbjct: 115 VSYDLVKGATIDYEEELIRAAFVV 138

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7406400|emb|CAB85510.1| putative protein [Arabidopsis thaliana]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 93/144 (64%), Positives = 114/144 (79%), Gaps = 6/144 (4%)

Query: 1   MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDN 60
           MSRSL++R+APY A R+R+NHRLL+ S +SA    + +SSS   S S     D +H++DN
Sbjct: 600 MSRSLVKRVAPYLAGRIRENHRLLNFSSASAIKEASSSSSSQPESSSN----DVVHLSDN 655

Query: 61  FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120
            I+RMKELQ+SE    K MLRLGVETGGCSGFQY F+LD + NPDDR+FEK+GVKLVVDN
Sbjct: 656 CIRRMKELQSSEPE--KKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKNGVKLVVDN 713

Query: 121 ISYDFVKGATVDYVEELIRSAFVV 144
           +SYD VKGAT+DY EELIR+AFVV
Sbjct: 714 VSYDLVKGATIDYEEELIRAAFVV 737

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513365|gb|AFK44744.1| unknown [Lotus japonicus]

 Score =  175 bits (444), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 89/142 (62%), Positives = 112/142 (78%), Gaps = 11/142 (7%)

Query: 4   SLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIK 63
           SLI+RLAP  AAR RQN R L+ S SS+   L+ A+SS          ++ +H+T+N ++
Sbjct: 2   SLIRRLAPSLAARFRQNERFLNFSSSSSV--LHHATSSSY--------VEPVHITENCVR 51

Query: 64  RMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDY-KINPDDRIFEKDGVKLVVDNIS 122
           RMKEL+ASE++ ++ MLRL VETGGCSGFQYAFDLD   +N DDR+FEK+G+KLVVD++S
Sbjct: 52  RMKELEASESTTSRKMLRLSVETGGCSGFQYAFDLDDDSVNSDDRVFEKEGIKLVVDSVS 111

Query: 123 YDFVKGATVDYVEELIRSAFVV 144
           YDFVKGATVDYVEELIRSAFVV
Sbjct: 112 YDFVKGATVDYVEELIRSAFVV 133

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511065|ref|XP_003625821.1| Iron-sulfur assembly protein IscA-like protein [Medicago truncatula] gi|355500836|gb|AES82039.1| Iron-sulfur assembly protein IscA-like protein [Medicago truncatula] gi|388506884|gb|AFK41508.1| unknown [Medicago truncatula]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 89/145 (61%), Positives = 115/145 (79%), Gaps = 6/145 (4%)

Query: 1   MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAA-ALNEASSSPSSSESPSPSLDSIHMTD 59
           M  SL +RLAP  AAR ++N  ++SS  SS+++  L+ A+SSPSS     P ++ +H+T+
Sbjct: 1   MQTSLFRRLAPLLAARFQRNQNIISSFSSSSSSSVLHHATSSPSS-----PDVEPVHITE 55

Query: 60  NFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVD 119
           N +++MKEL A+E+S    MLRL VETGGCSGFQYAF+LD + N DDR+FEK+G+KLVVD
Sbjct: 56  NCVRKMKELDANESSSGGKMLRLSVETGGCSGFQYAFNLDDRFNSDDRVFEKEGIKLVVD 115

Query: 120 NISYDFVKGATVDYVEELIRSAFVV 144
           NISYDFVKGATVDYVEELIRSAF+V
Sbjct: 116 NISYDFVKGATVDYVEELIRSAFIV 140

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592451|gb|AAM64402.1| unknown [Arabidopsis thaliana]

 Score =  174 bits (442), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 114/144 (79%), Gaps = 6/144 (4%)

Query: 1   MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDN 60
           MSRSL++R++PY A R+R+NHRLL+ S +SA    + +SSS   S S     D +H++DN
Sbjct: 1   MSRSLVKRVSPYLAGRIRENHRLLNFSSASAIKEASSSSSSQPESSSN----DVVHLSDN 56

Query: 61  FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120
            I+RMKELQ+SE    K MLRLGVETGGCSGFQY F+LD + NPDDR+FEK+GVKLVVDN
Sbjct: 57  CIRRMKELQSSEPE--KKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKNGVKLVVDN 114

Query: 121 ISYDFVKGATVDYVEELIRSAFVV 144
           +SYD VKGAT+DY EELIR+AFVV
Sbjct: 115 VSYDLVKGATIDYEEELIRAAFVV 138

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:505006581	158	AT5G03905 [Arabidopsis thalian	0.851	0.873	0.576	4.8e-39
UNIPROTKB|Q2TBG7	152	ISCA2 "Iron-sulfur cluster ass	0.524	0.559	0.577	8e-21
UNIPROTKB|F1S3F3	154	ISCA2 "Uncharacterized protein	0.524	0.551	0.566	1.7e-20
UNIPROTKB|J9P4R1	154	ISCA2 "Uncharacterized protein	0.524	0.551	0.566	2.7e-20
UNIPROTKB|Q86U28	154	ISCA2 "Iron-sulfur cluster ass	0.524	0.551	0.555	1.2e-19
MGI|MGI:1921566	154	Isca2 "iron-sulfur cluster ass	0.524	0.551	0.555	1.2e-19
RGD|1563216	154	RGD1563216 "similar to HESB li	0.524	0.551	0.544	2.5e-19
RGD|1309506	154	Isca2 "iron-sulfur cluster ass	0.524	0.551	0.533	5.1e-19
UNIPROTKB|E1C786	170	ISCA2 "Uncharacterized protein	0.524	0.5	0.522	1.4e-18
UNIPROTKB|Q60AU6	130	erpA2 "Iron-sulfur cluster ins	0.574	0.715	0.436	8.6e-17

TAIR|locus:505006581 AT5G03905 [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 83/144 (57%), Positives = 100/144 (69%)

Query:     1 MSRSLIQRLAPYFAARLRQNHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSIHMTDN 60
             MSRSL++R+APY A R+R+NHR                              D +H++DN
Sbjct:     1 MSRSLVKRVAPYLAGRIRENHRLLNFSSASAIKEASSSSSSQPESSSN----DVVHLSDN 56

Query:    61 FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120
              I+RMKELQ+SE    K MLRLGVETGGCSGFQY F+LD + NPDDR+FEK+GVKLVVDN
Sbjct:    57 CIRRMKELQSSEPE--KKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKNGVKLVVDN 114

Query:   121 ISYDFVKGATVDYVEELIRSAFVV 144
             +SYD VKGAT+DY EELIR+AFVV
Sbjct:   115 VSYDLVKGATIDYEEELIRAAFVV 138

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|Q2TBG7 ISCA2 "Iron-sulfur cluster assembly 2 homolog, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 52/90 (57%), Positives = 67/90 (74%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             IH+TD+ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FEK G 
Sbjct:    48 IHLTDSCVQRLLEI--TEGSE---FLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEKGGA 102

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVV 144
             ++VVD+ S  FVKGA VD+ +ELIRS+F V
Sbjct:   103 RVVVDSDSLAFVKGAHVDFSQELIRSSFQV 132

GO:0005739 "mitochondrion" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F1S3F3 ISCA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 51/90 (56%), Positives = 67/90 (74%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             IH+TD+ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    50 IHLTDSCVQRLLEI--TEGSE---FLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 104

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVV 144
             ++VVD+ S  FVKGA VD+ +ELIRS+F V
Sbjct:   105 RVVVDSDSLAFVKGAQVDFSQELIRSSFQV 134

GO:0005739 "mitochondrion" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|J9P4R1 ISCA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 51/90 (56%), Positives = 67/90 (74%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             IH+T++ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    50 IHLTNSCVQRLLEI--TEGSE---FLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 104

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVV 144
             K+VVD+ S  FVKGA VD+ +ELIRS+F V
Sbjct:   105 KVVVDSDSLAFVKGAQVDFSQELIRSSFQV 134

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|Q86U28 ISCA2 "Iron-sulfur cluster assembly 2 homolog, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 50/90 (55%), Positives = 66/90 (73%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             I +TD+ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    50 IRLTDSCVQRLLEI--TEGSE---FLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 104

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVV 144
             ++VVD+ S  FVKGA VD+ +ELIRS+F V
Sbjct:   105 RVVVDSDSLAFVKGAQVDFSQELIRSSFQV 134

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1921566 Isca2 "iron-sulfur cluster assembly 2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 50/90 (55%), Positives = 66/90 (73%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             I +TD+ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    50 IRLTDSCVQRLLEI--TEGSE---FLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 104

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVV 144
             ++VVD+ S  FVKGA VD+ +ELIRS+F V
Sbjct:   105 RVVVDSDSLAFVKGAQVDFSQELIRSSFQV 134

GO:0003674 "molecular_function" evidence=ND

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

RGD|1563216 RGD1563216 "similar to HESB like domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 49/90 (54%), Positives = 66/90 (73%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             I +TD+ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    50 IRLTDSCVQRLLEI--TEGSE---FLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 104

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVV 144
             ++VVD+ S  +VKGA VD+ +ELIRS+F V
Sbjct:   105 RVVVDSDSLAYVKGAQVDFSQELIRSSFQV 134

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

RGD|1309506 Isca2 "iron-sulfur cluster assembly 2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/90 (53%), Positives = 66/90 (73%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             I +TD+ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    50 IRLTDSCVQRLLEI--TEGSE---FLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 104

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVV 144
             ++VVD+ +  +VKGA VD+ +ELIRS+F V
Sbjct:   105 RVVVDSDNLAYVKGAQVDFSQELIRSSFQV 134

GO:0005739 "mitochondrion" evidence=ISO

UNIPROTKB|E1C786 ISCA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 47/90 (52%), Positives = 66/90 (73%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             ++++++ +KR+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    66 VYLSESCVKRLLEI--AEGSE---FLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 120

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVV 144
             ++VVD  S  FVKG+ VD+ +ELIRS+F V
Sbjct:   121 RVVVDVDSLAFVKGSMVDFSQELIRSSFQV 150

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q60AU6 erpA2 "Iron-sulfur cluster insertion protein ErpA 2" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 41/94 (43%), Positives = 60/94 (63%)

Query:    53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKD 112
             ++I  TD+  +R+ EL A E  D    LR+ V  GGCSGFQY F  D  +N DD + EK+
Sbjct:    23 ETIKFTDSAAQRVSELLAEE-GDQNLKLRVYVTGGGCSGFQYGFTFDEVVNEDDTVVEKN 81

Query:   113 GVKLVVDNISYDFVKGATVDYVEELIRSAFVVRH 146
             GV ++VD +S  +++GA +DY E +  S FV+R+
Sbjct:    82 GVSVLVDPMSLQYLQGAEIDYTENVSGSQFVIRN 115

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LCY2	ISAM2_ARATH	No assigned EC number	0.6458	0.8518	0.8734	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
PLN03082	163	PLN03082, PLN03082, Iron-sulfur cluster assembly;	8e-74
TIGR00049	105	TIGR00049, TIGR00049, Iron-sulfur cluster assembly	5e-37
COG0316	110	COG0316, sufA, Fe-S cluster assembly scaffold prot	2e-33
PRK13623	115	PRK13623, PRK13623, iron-sulfur cluster insertion	4e-30
pfam01521	91	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosy	3e-26
TIGR02011	105	TIGR02011, IscA, iron-sulfur cluster assembly prot	5e-16
PRK09504	122	PRK09504, sufA, iron-sulfur cluster assembly scaff	1e-14
TIGR01997	107	TIGR01997, sufA_proteo, FeS assembly scaffold SufA	6e-14
PRK09502	107	PRK09502, iscA, iron-sulfur cluster assembly prote	1e-13

>gnl|CDD|215564 PLN03082, PLN03082, Iron-sulfur cluster assembly; Provisional

 Score =  218 bits (556), Expect = 8e-74
 Identities = 103/144 (71%), Positives = 116/144 (80%), Gaps = 4/144 (2%)

Query: 1   MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDN 60
           MSRSL++R+AP  A R+RQNHRLL+ S SSA       +S+ SSS S S SLD++HMTDN
Sbjct: 5   MSRSLLRRVAPLLAGRIRQNHRLLNFSSSSALKE----ASTSSSSPSSSASLDAVHMTDN 60

Query: 61  FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120
            I+R+KELQ SE S    MLRL VETGGCSGFQY F+LD K N DDR+FEKDGVKLVVDN
Sbjct: 61  CIRRLKELQTSEPSAEDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDN 120

Query: 121 ISYDFVKGATVDYVEELIRSAFVV 144
           ISYDFVKGATVDYVEELIRSAFVV
Sbjct: 121 ISYDFVKGATVDYVEELIRSAFVV 144

Length = 163

>gnl|CDD|232799 TIGR00049, TIGR00049, Iron-sulfur cluster assembly accessory protein

 Score =  122 bits (309), Expect = 5e-37
 Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 1/88 (1%)

Query: 58  TDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLV 117
           TD+  KR+K L A E   N   LR+GV+ GGCSG QY  + D + N DD +FE+DGVK+V
Sbjct: 3   TDSAAKRIKALLAGEGEPNL-GLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVV 61

Query: 118 VDNISYDFVKGATVDYVEELIRSAFVVR 145
           VD  S  ++ G+ +DYVEEL+ S F   
Sbjct: 62  VDPKSLPYLDGSEIDYVEELLGSGFTFT 89

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|223393 COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

 Score =  113 bits (286), Expect = 2e-33
 Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
           I +TD    R+K L A E  +N   LR+GV+ GGCSGFQY  + D +IN DD +FE+DGV
Sbjct: 5   ITLTDAAAARVKALLAKEGEENLG-LRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGV 63

Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVR 145
           K+VVD  S  +++G  +DYVE+L+ S F  +
Sbjct: 64  KVVVDPKSLPYLEGTEIDYVEDLLGSGFTFK 94

Length = 110

>gnl|CDD|184186 PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional

 Score =  105 bits (264), Expect = 4e-30
 Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 5/104 (4%)

Query: 42  PSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYK 101
             S + P P    +  TD    ++KEL   E + +   LR+ +  GGCSGFQY F  D +
Sbjct: 1   MMSDDVPLP----LVFTDAAAAKVKELIEEEGNPD-LKLRVYITGGGCSGFQYGFTFDEQ 55

Query: 102 INPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVR 145
           +N DD   EK GV LVVD +S  ++ GA VDY E L  S FV++
Sbjct: 56  VNEDDTTIEKQGVTLVVDPMSLQYLVGAEVDYTEGLEGSRFVIK 99

Length = 115

>gnl|CDD|110518 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis

 Score = 94.6 bits (236), Expect = 3e-26
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
           I +TD   K +K+L   E    +  LR+GV  GGCSGF Y    + + +  D +FE+DGV
Sbjct: 1   ITLTDAAAKHIKKLLDLE--GGENGLRIGVRYGGCSGFSYGLTFEDEPDEGDEVFEQDGV 58

Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFV 143
            +VVD  S  +++G  +D+VEEL+ S F 
Sbjct: 59  TVVVDEKSLPYLEGTEIDFVEELLGSGFT 87

This family is involved in iron-sulphur cluster biosynthesis. Its members include proteins that are involved in nitrogen fixation such as the HesB and HesB-like proteins. Length = 91

>gnl|CDD|213674 TIGR02011, IscA, iron-sulfur cluster assembly protein IscA

 Score = 69.1 bits (169), Expect = 5e-16
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAM-LRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           I +TD+   R+    A+     K   LRLGV+T GCSG  Y  +   +  PDD +FE  G
Sbjct: 1   ITLTDSAAARVNTFLANR---GKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKG 57

Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAF 142
           VK+V+D  S  ++ G  +D+V+E +   F
Sbjct: 58  VKIVIDGKSLQYLDGTQLDFVKEGLNEGF 86

This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|181915 PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
           + +T      ++EL A +       +RLGV+  GC+GF Y  D   + + DD +FE DG 
Sbjct: 18  LTLTPAAAAHIRELMAKQPG--MKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGA 75

Query: 115 KLVVDNISYDFVKGATVDYVEE 136
           KL V   +  F+ G  VDYV E
Sbjct: 76  KLFVPLQAMPFIDGTEVDYVRE 97

Length = 122

>gnl|CDD|131052 TIGR01997, sufA_proteo, FeS assembly scaffold SufA

 Score = 63.7 bits (155), Expect = 6e-14
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
           I +TD     ++EL A         +RLGV+  GC+G +Y  DL  +   DD + E DG 
Sbjct: 3   ITLTDAAAIHIRELVAKRP--EAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGA 60

Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFV 143
           K+ V   +  F+ G  VD+V   +R  F 
Sbjct: 61  KVFVAPEAVLFILGTQVDFVRTTLRQGFK 89

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 107

>gnl|CDD|181914 PRK09502, iscA, iron-sulfur cluster assembly protein; Provisional

 Score = 63.0 bits (153), Expect = 1e-13
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 54  SIHMTDNFIKRMKELQASETSDNKAM-LRLGVETGGCSGFQYAFDLDYKINPDDRIFEKD 112
           SI ++D+   R+    A+     K   LRLGV T GCSG  Y  +   +  P+D +FE  
Sbjct: 2   SITLSDSAAARVNTFLANR---GKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDK 58

Query: 113 GVKLVVDNISYDFVKGATVDYVEELIRSAF 142
           GVK+VVD  S  F+ G  +D+V+E +   F
Sbjct: 59  GVKVVVDGKSLQFLDGTQLDFVKEGLNEGF 88

Length = 107

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
PLN03082	163	Iron-sulfur cluster assembly; Provisional	100.0
COG0316	110	sufA Fe-S cluster assembly scaffold protein [Postt	99.97
PRK13623	115	iron-sulfur cluster insertion protein ErpA; Provis	99.96
PRK09502	107	iscA iron-sulfur cluster assembly protein; Provisi	99.96
PRK09504	122	sufA iron-sulfur cluster assembly scaffold protein	99.96
TIGR01997	107	sufA_proteo FeS assembly scaffold SufA. This model	99.96
TIGR02011	105	IscA iron-sulfur cluster assembly protein IscA. Th	99.95
TIGR01911	92	HesB_rel_seleno HesB-like selenoprotein. This mode	99.95
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.94
TIGR00049	105	Iron-sulfur cluster assembly accessory protein. Pr	99.94
KOG1119	199	consensus Mitochondrial Fe-S cluster biosynthesis	99.94
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.93
KOG1120	134	consensus Fe-S cluster biosynthesis protein ISA1 (	99.92
PF01521	112	Fe-S_biosyn: Iron-sulphur cluster biosynthesis; In	99.85
COG4841	95	Uncharacterized protein conserved in bacteria [Fun	99.64
COG4918	114	Uncharacterized protein conserved in bacteria [Fun	98.76
COG3564	116	Uncharacterized protein conserved in bacteria [Fun	96.94
PF05610	95	DUF779: Protein of unknown function (DUF779); Inte	96.01

>PLN03082 Iron-sulfur cluster assembly; Provisional

Probab=100.00  E-value=1.1e-38  Score=250.07  Aligned_cols=149  Identities=68%  Similarity=0.968  Sum_probs=123.7

Q ss_pred             CchhhhhhhhHHHHHHHhhhcccccCCccchhhhcccCCCCCCCCCCCCCCCceeeeCHHHHHHHHHHHhccCCCCCceE
Q 031290            1 MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAML   80 (162)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ItIT~~Aa~~lk~ll~~~~~~~~~~L   80 (162)
                      |||+|+||++|++++|+|+|||+|.+++++.....+.+    ...+.+....+.|+|||+|+++|++++++++..++.+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~I~lTd~A~~~ik~l~~~~~~~~~~~L   80 (163)
T PLN03082          5 MSRSLLRRVAPLLAGRIRQNHRLLNFSSSSALKEASTS----SSSPSSSASLDAVHMTDNCIRRLKELQTSEPSAEDKML   80 (163)
T ss_pred             cchhhhhccccceeecccchhhHHHhhhhhhhhhhccc----ccCccccccCCceEECHHHHHHHHHHHHhCCCCCCceE
Confidence            68999999999999999999999965333221112111    11122223346899999999999999987653235789


Q ss_pred             EEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEEeeecCCcceEEE-ecCccceeE
Q 031290           81 RLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVV-RHFLLLSVF  153 (162)
Q Consensus        81 Rl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tIDy~e~~~g~gF~i-~np~~~~~~  153 (162)
                      ||+|++|||+||+|.|.++++++++|.+++.+|++|+||+.++.||+|++|||++++++++|+| +|||...-|
T Consensus        81 Rl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~IDYve~l~~~gF~f~~NPna~~~C  154 (163)
T PLN03082         81 RLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGC  154 (163)
T ss_pred             EEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCEEEeecCCCCCeeEEecCCCCCCCc
Confidence            9999999999999999999988899999999999999999999999999999999999999999 999987655

>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-31  Score=198.21  Aligned_cols=101  Identities=44%  Similarity=0.708  Sum_probs=95.7

Q ss_pred             CceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEE
Q 031290           52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV  131 (162)
Q Consensus        52 ~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tI  131 (162)
                      +++|+|||+|++++++++++++ .++.+|||+|+++||+|++|.|.|+++++++|.+++.+|++++||+.++.||+|++|
T Consensus         2 ~~~itlT~~Aa~~v~~ll~~~~-~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~~I   80 (110)
T COG0316           2 AMMITLTDAAAARVKALLAKEG-EENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGTEI   80 (110)
T ss_pred             CCceeeCHHHHHHHHHHHHhcc-CCCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCCEE
Confidence            4799999999999999999885 357899999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecCCcceEEEecCccceeE
Q 031290          132 DYVEELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       132 Dy~e~~~g~gF~i~np~~~~~~  153 (162)
                      ||+++++|++|+|+|||...-|
T Consensus        81 Dyv~~~~g~~F~~~NPNA~~~C  102 (110)
T COG0316          81 DYVEDLLGSGFTFKNPNAKSSC  102 (110)
T ss_pred             EEEEcCcCCceEEECCCCCccc
Confidence            9999999999999999987654

>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional

Probab=99.96  E-value=8.9e-30  Score=188.68  Aligned_cols=101  Identities=40%  Similarity=0.608  Sum_probs=93.8

Q ss_pred             CceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEE
Q 031290           52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV  131 (162)
Q Consensus        52 ~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tI  131 (162)
                      .|+|+||++|+++|+++++.++ .++.+|||+|+++||+|++|.|.++++++++|++++.+|++|+||+.+++||+|++|
T Consensus         7 ~~~i~iT~~A~~~i~~~~~~~~-~~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g~~I   85 (115)
T PRK13623          7 PLPLVFTDAAAAKVKELIEEEG-NPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVGAEV   85 (115)
T ss_pred             CcceEECHHHHHHHHHHHhhCC-CCceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCCCEE
Confidence            4899999999999999997654 245679999999999999999999998899999999999999999999999999999


Q ss_pred             EeeecCCcceEEEecCccceeE
Q 031290          132 DYVEELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       132 Dy~e~~~g~gF~i~np~~~~~~  153 (162)
                      ||++++.+++|+|+|||..+-|
T Consensus        86 Dy~~~~~~~~F~f~NPn~~~~C  107 (115)
T PRK13623         86 DYTEGLEGSRFVIKNPNAKTTC  107 (115)
T ss_pred             EeecCCCcceEEEECCCCCcCC
Confidence            9999999999999999987765

>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional

Probab=99.96  E-value=1.2e-29  Score=185.97  Aligned_cols=99  Identities=33%  Similarity=0.551  Sum_probs=92.5

Q ss_pred             ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEE
Q 031290           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD  132 (162)
Q Consensus        53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tID  132 (162)
                      |+|+|||+|+++|++++++++  +..+|||+|+++||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++||
T Consensus         1 m~i~iT~~A~~~i~~l~~~~~--~~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~ID   78 (107)
T PRK09502          1 MSITLSDSAAARVNTFLANRG--KGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLD   78 (107)
T ss_pred             CeEEECHHHHHHHHHHHhCcC--CCceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEE
Confidence            579999999999999998664  356899999999999999999998889999999999999999999999999999999


Q ss_pred             eeecCCcceEEEecCccceeE
Q 031290          133 YVEELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       133 y~e~~~g~gF~i~np~~~~~~  153 (162)
                      |++++.+++|+|+|||...-|
T Consensus        79 y~~~~~~~~F~f~NPna~~~C   99 (107)
T PRK09502         79 FVKEGLNEGFKFTNPNVKDEC   99 (107)
T ss_pred             EeeCCCCceEEEECCCCCCcc
Confidence            999999999999999987665

>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional

Probab=99.96  E-value=1.9e-29  Score=189.34  Aligned_cols=102  Identities=30%  Similarity=0.482  Sum_probs=95.1

Q ss_pred             CCCceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCc
Q 031290           50 PSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGA  129 (162)
Q Consensus        50 ~~~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~  129 (162)
                      -.||+|+|||+|+++|++++++++  +..+|||.|+++||+|++|.|.++++++++|++++.+|++|+||+.++.||+|+
T Consensus        13 ~~~~~I~iT~~A~~~i~~l~~~~~--~~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L~g~   90 (122)
T PRK09504         13 FAWQGLTLTPAAAAHIRELMAKQP--GMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFIDGT   90 (122)
T ss_pred             CCcCCEEECHHHHHHHHHHHhcCC--CCceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhhCCc
Confidence            457999999999999999998664  346899999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeecCCcceEEEecCccceeE
Q 031290          130 TVDYVEELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       130 tIDy~e~~~g~gF~i~np~~~~~~  153 (162)
                      +|||++++++++|+|.|||...-|
T Consensus        91 ~IDy~~~~~~~gF~f~NPna~~~C  114 (122)
T PRK09504         91 EVDYVREGLNQIFKFHNPKAQNEC  114 (122)
T ss_pred             EEEeecCCCcceEEEECCCCCCCc
Confidence            999999999999999999987766

>TIGR01997 sufA_proteo FeS assembly scaffold SufA

Probab=99.96  E-value=1.2e-28  Score=180.74  Aligned_cols=98  Identities=32%  Similarity=0.510  Sum_probs=92.1

Q ss_pred             eeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEEe
Q 031290           54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDY  133 (162)
Q Consensus        54 ~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tIDy  133 (162)
                      +|+|||+|+++|++++++++  +..+|||+|+++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||
T Consensus         2 ~i~iT~~A~~~i~~l~~~~~--~~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy   79 (107)
T TIGR01997         2 VITLTDAAAIHIRELVAKRP--EAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQVDF   79 (107)
T ss_pred             eEEECHHHHHHHHHHHhcCC--CCcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEEEE
Confidence            69999999999999998764  3468999999999999999999988899999999999999999999999999999999


Q ss_pred             eecCCcceEEEecCccceeE
Q 031290          134 VEELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       134 ~e~~~g~gF~i~np~~~~~~  153 (162)
                      ++++++++|+|+|||..+-|
T Consensus        80 ~~~~~~~~F~~~NPn~~~~C   99 (107)
T TIGR01997        80 VRTTLRQGFKFNNPNATSAC   99 (107)
T ss_pred             EEcCCcceEEEECCCCCCcc
Confidence            99999999999999997655

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.

>TIGR02011 IscA iron-sulfur cluster assembly protein IscA

Probab=99.95  E-value=2.6e-28  Score=178.33  Aligned_cols=97  Identities=33%  Similarity=0.574  Sum_probs=90.6

Q ss_pred             eeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEEee
Q 031290           55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYV  134 (162)
Q Consensus        55 ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tIDy~  134 (162)
                      |+||++|+++|++++++++  +..+|||+|+++||+|++|.|.++++++++|++++.+|++|+||+.++.||+|++|||+
T Consensus         1 I~iT~~A~~~i~~~~~~~~--~~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~   78 (105)
T TIGR02011         1 ITLTDSAAARVNTFLANRG--KGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFV   78 (105)
T ss_pred             CEECHHHHHHHHHHHhccC--CCceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEe
Confidence            6899999999999998764  34689999999999999999999888999999999999999999999999999999999


Q ss_pred             ecCCcceEEEecCccceeE
Q 031290          135 EELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       135 e~~~g~gF~i~np~~~~~~  153 (162)
                      +++++++|+|+|||...-|
T Consensus        79 ~~~~~~~F~~~nPna~~~C   97 (105)
T TIGR02011        79 KEGLNEGFKFTNPNVKDEC   97 (105)
T ss_pred             cCCCcceEEEECCCCCccC
Confidence            9999999999999987654

This clade is limited to the proteobacteria.

>TIGR01911 HesB_rel_seleno HesB-like selenoprotein

Probab=99.95  E-value=1.5e-27  Score=171.20  Aligned_cols=91  Identities=18%  Similarity=0.320  Sum_probs=84.1

Q ss_pred             ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEE
Q 031290           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD  132 (162)
Q Consensus        53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tID  132 (162)
                      .+|+|||+|+++|++++++++. +..+|||+|+++||+|++|.|.+++ ++++|.+++.+|++|+||+.+++||.|++||
T Consensus         2 ~~i~lT~~A~~~i~~ll~~~~~-~~~~LRi~v~~gGCsG~~Y~~~ld~-~~~~D~v~~~~gv~v~vD~~s~~~l~G~~iD   79 (92)
T TIGR01911         2 KIVAMSDDAYEEFKDFLKENDI-DNDVIRIHFAGMGCMGPMFNLIADE-EKEGDEIEKIHDLTFLIDKNLIDQFGGFSIE   79 (92)
T ss_pred             CceEECHHHHHHHHHHHHhCCC-CCceEEEEEeCCCccCcccceEecC-CCCCCEEEEeCCEEEEECHHHHHHhCCCEEE
Confidence            5899999999999999987653 3457999999999999999999987 4899999999999999999999999999999


Q ss_pred             eeecCCcceEEEe
Q 031290          133 YVEELIRSAFVVR  145 (162)
Q Consensus       133 y~e~~~g~gF~i~  145 (162)
                      |++++.+++|+|.
T Consensus        80 y~~~~~g~gF~~~   92 (92)
T TIGR01911        80 CAEENFGAGFSLD   92 (92)
T ss_pred             EecCCCCCcEEeC
Confidence            9999999999984

This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.94  E-value=5.2e-27  Score=188.43  Aligned_cols=96  Identities=19%  Similarity=0.267  Sum_probs=89.9

Q ss_pred             eeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEe--cCCCCCCcEEEEECCeEEEEcCCcccccCCcEE
Q 031290           54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDL--DYKINPDDRIFEKDGVKLVVDNISYDFVKGATV  131 (162)
Q Consensus        54 ~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l--~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tI  131 (162)
                      ||+||++|+++|++++++++  .+.+|||+|+++||+|++|+|.|  +++++++|.+++.+|++|+||+.+++||+|++|
T Consensus         1 ~i~iTd~A~~~i~~ll~~~~--~~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~I   78 (192)
T PRK11190          1 MITISDAAQAHFAKLLANQE--EGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEI   78 (192)
T ss_pred             CcEECHHHHHHHHHHHhcCC--CCceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEE
Confidence            68999999999999998764  34689999999999999999999  677889999999999999999999999999999


Q ss_pred             EeeecCCcceEEEecCccce
Q 031290          132 DYVEELIRSAFVVRHFLLLS  151 (162)
Q Consensus       132 Dy~e~~~g~gF~i~np~~~~  151 (162)
                      ||++++++++|+|+|||..+
T Consensus        79 Dyve~~~g~gF~f~NPNa~~   98 (192)
T PRK11190         79 DFVTDQLGSQLTLKAPNAKM   98 (192)
T ss_pred             EEeecCCCCceEEECCCCCC
Confidence            99999999999999999875

>TIGR00049 Iron-sulfur cluster assembly accessory protein

Probab=99.94  E-value=2.1e-26  Score=167.11  Aligned_cols=97  Identities=43%  Similarity=0.700  Sum_probs=90.3

Q ss_pred             eeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEEeee
Q 031290           56 HMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVE  135 (162)
Q Consensus        56 tIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tIDy~e  135 (162)
                      +||++|+++|+++++.++. ++.+|||+++.+||+|++|.|.++++++++|++++.+|++|+||+.+++||+|++|||++
T Consensus         1 ~iT~~A~~~l~~~~~~~~~-~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~~   79 (105)
T TIGR00049         1 TLTDSAAKRIKALLAGEGE-PNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDYVE   79 (105)
T ss_pred             CcCHHHHHHHHHHHhcCCC-CceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEEee
Confidence            6899999999999987653 357899999999999999999999888899999999999999999999999999999999


Q ss_pred             cCCcceEEEecCccceeE
Q 031290          136 ELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       136 ~~~g~gF~i~np~~~~~~  153 (162)
                      +..+++|+|+|||....|
T Consensus        80 ~~~~~~f~i~nPn~~~~c   97 (105)
T TIGR00049        80 ELLGSGFTFTNPNAKGTC   97 (105)
T ss_pred             cCCcceEEEECCCCCccC
Confidence            999999999999987765

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.

>KOG1119 consensus Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain) [Energy production and conversion; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.2e-26  Score=181.70  Aligned_cols=141  Identities=43%  Similarity=0.612  Sum_probs=123.9

Q ss_pred             chhhhhhhhHHHHHHHhhhcccccCCccchhhhcccCCCCCCCCCCCCCCCceeeeCHHHHHHHHHHHhccCCCCCceEE
Q 031290            2 SRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLR   81 (162)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LR   81 (162)
                      .+++.+++++++..+++++++..   ...+++...++..+++..++..++ -.++|+|.|.++++++....+    ..||
T Consensus        45 ~~~~~~~~T~~~~~~l~e~~~~~---~f~s~~~~ke~~ss~~~~~e~~~~-~~~~lsds~~krl~EI~~~~p----e~LR  116 (199)
T KOG1119|consen   45 RRSFRRTVTTLAQFPLTELFIKK---AFYSASATKEAFSSSSRIPEKSPG-FNLHLSDSCSKRLKEIYENSP----EFLR  116 (199)
T ss_pred             HHhhhchhhhhhhhhhHHHHHHh---hhccHHHHhhhhcCcccCCccCCC-ceEEehhHHHHHHHHHHhCCc----ceEE
Confidence            46788889999999988887776   456667777888888888777777 489999999999999987653    5899


Q ss_pred             EEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEEeeecCCcceEEEec-Cccc
Q 031290           82 LGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVRH-FLLL  150 (162)
Q Consensus        82 l~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tIDy~e~~~g~gF~i~n-p~~~  150 (162)
                      |.|++|||+||||.|.+|...++||.+++.+|.+|+||..++.|++|+||||.+++++++|++-| |...
T Consensus       117 l~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatvdy~~ELIrSsF~ivnNP~A~  186 (199)
T KOG1119|consen  117 LTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATVDYTNELIRSSFRIVNNPSAK  186 (199)
T ss_pred             EEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCceeehHHHHhhhhheeecCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999874 4443

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.93  E-value=1.2e-25  Score=180.23  Aligned_cols=94  Identities=19%  Similarity=0.267  Sum_probs=87.6

Q ss_pred             eeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEe--cCCCCCCcEEEEECCeEEEEcCCcccccCCcEEE
Q 031290           55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDL--DYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD  132 (162)
Q Consensus        55 ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l--~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tID  132 (162)
                      |+||++|+++|++++++++  ++.+|||+|+++||+|++|+|.+  +++++++|.+++.+|++|+||+.+++||+|++||
T Consensus         1 I~IT~~A~~~l~~ll~~~~--~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~ID   78 (190)
T TIGR03341         1 ITITEAAQAYLAKLLAKQN--EGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVID   78 (190)
T ss_pred             CEECHHHHHHHHHHHhhCC--CCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEE
Confidence            6899999999999998764  34689999999999999999999  5678899999999999999999999999999999


Q ss_pred             eeecCCcceEEEecCccc
Q 031290          133 YVEELIRSAFVVRHFLLL  150 (162)
Q Consensus       133 y~e~~~g~gF~i~np~~~  150 (162)
                      |++++++++|+|+|||..
T Consensus        79 yve~~~g~gF~f~NPna~   96 (190)
T TIGR03341        79 FVTDRMGGQLTLKAPNAK   96 (190)
T ss_pred             EeecCCCceeEEeCCccC
Confidence            999999999999999965

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]

Probab=99.92  E-value=7.8e-25  Score=164.00  Aligned_cols=105  Identities=23%  Similarity=0.468  Sum_probs=97.1

Q ss_pred             CCCCCCceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCccccc
Q 031290           47 SPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFV  126 (162)
Q Consensus        47 ~~~~~~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L  126 (162)
                      ..++.+..|++||.|+++|++++++++  +...|||.|+..||+|++|.|.+.+++...|++++.+|++|+||++++..+
T Consensus        22 ~~~~~k~~ltLTp~Av~~ik~ll~~~~--e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~KA~l~l   99 (134)
T KOG1120|consen   22 KLAPRKAALTLTPSAVNHIKQLLSDKP--EDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPKALLTL   99 (134)
T ss_pred             cccccccccccCHHHHHHHHHHHHhCC--cCceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCcEEEEcccceeee
Confidence            334567899999999999999999764  578999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEeeecCCcceEEEecCccceeE
Q 031290          127 KGATVDYVEELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       127 ~G~tIDy~e~~~g~gF~i~np~~~~~~  153 (162)
                      -|+++||+++.++++|+|.|||...-|
T Consensus       100 iGteMDyvddkL~Sefvf~npna~gtc  126 (134)
T KOG1120|consen  100 IGTEMDYVDDKLSSEFVFSNPNAKGTC  126 (134)
T ss_pred             ccceehhhhhhhcCceEeeCCCccccc
Confidence            999999999999999999999977544

>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein

Probab=99.85  E-value=1.2e-20  Score=138.10  Aligned_cols=97  Identities=34%  Similarity=0.504  Sum_probs=87.8

Q ss_pred             ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCC--------CC-CcEEEEEecCCC-CCCcEEEEECCeEEEEcCCc
Q 031290           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGG--------CS-GFQYAFDLDYKI-NPDDRIFEKDGVKLVVDNIS  122 (162)
Q Consensus        53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gG--------Cs-G~~Y~l~l~~~~-~~dD~v~e~~Gi~v~VD~~s  122 (162)
                      |.|+||++|+++|++++..++.   . |||+++.+|        |+ |++|.|.+++++ +++|.+++.+|++|+||+.+
T Consensus         1 M~I~iT~~A~~~l~~~~~~~~~---~-irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~   76 (112)
T PF01521_consen    1 MKITITDAAAERLKQLLKEDPK---K-IRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYS   76 (112)
T ss_dssp             -EEEE-HHHHHHHHHHHHCTTE---S-EEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGG
T ss_pred             CEEEECHHHHHHHHHHHhcCCC---E-EEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccH
Confidence            7899999999999999998741   2 999999999        99 999999999877 89999999999999999999


Q ss_pred             cccc-CCcEEEeeecCCcceEEEecCccceeE
Q 031290          123 YDFV-KGATVDYVEELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       123 ~~~L-~G~tIDy~e~~~g~gF~i~np~~~~~~  153 (162)
                      .+|| +|++|||+++..+.+|++.||+...=|
T Consensus        77 ~~~l~~~~~iD~~~~~~~~~f~~~~~~~~~~~  108 (112)
T PF01521_consen   77 LWYLDEGLTIDYVEDLGGFGFKSDNPNLDSNC  108 (112)
T ss_dssp             HHHH-TTEEEEEEEETTEEEEEEETTTEEEEE
T ss_pred             hhhhhCCCEEEEEEccCccEEEECCCCcCcee
Confidence            9999 999999999999999999999876544

They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.

>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.64  E-value=9.3e-16  Score=108.65  Aligned_cols=88  Identities=25%  Similarity=0.333  Sum_probs=73.8

Q ss_pred             ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCC----CcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCC
Q 031290           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCS----GFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKG  128 (162)
Q Consensus        53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCs----G~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G  128 (162)
                      |.|+||+.|.+|+++.+..++   +..||++|+.|||+    ||+.++..+. |++--..-+.+|++|+|..+++||+++
T Consensus         1 Mni~vtd~A~~wfk~E~~l~~---g~~vrffvRyGG~~~~~~GFS~gv~~e~-PkE~g~~q~~Dgltffiee~DlWYF~d   76 (95)
T COG4841           1 MNIEVTDQALKWFKEELDLEE---GNKVRFFVRYGGCSSLQQGFSLGVAKEV-PKEIGYKQEYDGLTFFIEEKDLWYFDD   76 (95)
T ss_pred             CceEEcHHHHHHHHHhcCCCC---CCEEEEEEEEcCcccccCCcceeeeccC-chhhchheeecCeEEEEecCceEEEcC
Confidence            789999999999999998763   67899999999998    6666665442 455445567899999999999999999


Q ss_pred             --cEEEeeecCCcceEEE
Q 031290          129 --ATVDYVEELIRSAFVV  144 (162)
Q Consensus       129 --~tIDy~e~~~g~gF~i  144 (162)
                        ++|||.++.....|..
T Consensus        77 ~d~~v~y~~~~Dei~fs~   94 (95)
T COG4841          77 HDLKVDYSPDTDEISFSY   94 (95)
T ss_pred             CcEEEeccCCCCcceeec
Confidence              9999999988887764

>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.76  E-value=3.4e-08  Score=72.04  Aligned_cols=90  Identities=16%  Similarity=0.181  Sum_probs=68.1

Q ss_pred             ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCC-cEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCC-cE
Q 031290           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSG-FQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKG-AT  130 (162)
Q Consensus        53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG-~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G-~t  130 (162)
                      |.||+|++|+++|+.....+.. ....+|...++.||.| --+.++++.+....|..++.++.+++|-.-..-|+++ ++
T Consensus         1 M~Itftd~a~~~l~~a~d~nl~-~~~hl~ydtEgc~Ca~SGi~t~rlvae~tg~d~~idsn~gPiyik~~~~~Ff~D~mt   79 (114)
T COG4918           1 MKITFTDKAADKLKAAGDVNLV-FDDHLLYDTEGCACAGSGISTYRLVAEETGFDASIDSNFGPIYIKDYGSYFFQDEMT   79 (114)
T ss_pred             CeEEecHHHHHHHHHhhccCcC-ccceEEEeccccccccCCcceEEEEEeccCcccccccCCCcEEEEecceeEecceee
Confidence            7899999999999988776542 2356676666677754 2355666666677888999999999999988888886 89


Q ss_pred             EEeeecCCcceEEEe
Q 031290          131 VDYVEELIRSAFVVR  145 (162)
Q Consensus       131 IDy~e~~~g~gF~i~  145 (162)
                      |||.+..  ....++
T Consensus        80 idyN~~~--ktl~Lk   92 (114)
T COG4918          80 IDYNPSY--KTLELK   92 (114)
T ss_pred             eecCCcc--ceEEEc
Confidence            9998764  344444

>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.94  E-value=0.011  Score=43.19  Aligned_cols=94  Identities=21%  Similarity=0.266  Sum_probs=65.2

Q ss_pred             ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecC---CCCCCcEEE-EECCeEEEEcCCcccccCC
Q 031290           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDY---KINPDDRIF-EKDGVKLVVDNISYDFVKG  128 (162)
Q Consensus        53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~---~~~~dD~v~-e~~Gi~v~VD~~s~~~L~G  128 (162)
                      ..++.|++|+.-|.++..+.+     .+ ++-..|||+.-+--|-+..   -..++|+.. +.+|++|+|...++.+-+-
T Consensus         5 ~~V~aT~aAl~Li~~l~~~hg-----pv-mFHQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWKH   78 (116)
T COG3564           5 ARVLATPAALDLIAELQAEHG-----PV-MFHQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWKH   78 (116)
T ss_pred             cceecCHHHHHHHHHHHHhcC-----CE-EEeccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhhc
Confidence            468999999999999887664     23 4556778862232232221   123566554 6799999999999988886


Q ss_pred             --cEEEeeecCCcceEEEecCccceeEEeE
Q 031290          129 --ATVDYVEELIRSAFVVRHFLLLSVFRFV  156 (162)
Q Consensus       129 --~tIDy~e~~~g~gF~i~np~~~~~~~~~  156 (162)
                        ..||-+.. -|..|.+.|...   -||+
T Consensus        79 TqLIIDVVpG-RGGmFSLdng~E---~RFL  104 (116)
T COG3564          79 TQLIIDVVPG-RGGMFSLDNGRE---KRFL  104 (116)
T ss_pred             cEEEEEEecC-CCceeEccCCcc---eeee
Confidence              58888764 578899997665   4555

>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function

Probab=96.01  E-value=0.04  Score=39.87  Aligned_cols=72  Identities=19%  Similarity=0.281  Sum_probs=51.0

Q ss_pred             EEEecCCCCCcEEEEEecC---CCCCCcEEE-EECCeEEEEcCCcccccCC--cEEEeeecCCcceEEEecCccceeEEe
Q 031290           82 LGVETGGCSGFQYAFDLDY---KINPDDRIF-EKDGVKLVVDNISYDFVKG--ATVDYVEELIRSAFVVRHFLLLSVFRF  155 (162)
Q Consensus        82 l~v~~gGCsG~~Y~l~l~~---~~~~dD~v~-e~~Gi~v~VD~~s~~~L~G--~tIDy~e~~~g~gF~i~np~~~~~~~~  155 (162)
                      ++-..|||..-+-=|-+..   ...+.|+.+ +.+|++|+|++....|.+.  .+||-++ +.|.+|.+.+|...   ||
T Consensus        14 mFhQSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~-GrG~~FSLE~~~G~---rF   89 (95)
T PF05610_consen   14 MFHQSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVP-GRGGGFSLEAPEGK---RF   89 (95)
T ss_pred             EEEeCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEe-cCCCeeeccCCCCc---EE
Confidence            3445778862233333332   234567654 6799999999999999998  5899876 56799999999874   66


Q ss_pred             Ee
Q 031290          156 VI  157 (162)
Q Consensus       156 ~~  157 (162)
                      +|
T Consensus        90 ~~   91 (95)
T PF05610_consen   90 LT   91 (95)
T ss_pred             EE
Confidence            55

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
1nwb_A	124	Solution Nmr Structure Of Protein Aq_1857 From Aqui		4e-14
2apn_A	114	Hi1723 Solution Structure Length = 114		9e-14
1r94_A	118	Crystal Structure Of Isca (mercury Derivative) Leng		1e-09
1s98_A	107	E.Coli Isca Crystal Structure To 2.3 A Length = 107		1e-09
2d2a_A	145	Crystal Structure Of Escherichia Coli Sufa Involved		2e-07

>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex Aeolicus: Northeast Structural Genomics Consortium Target Qr6 Length = 124

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 57  MTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKL 116
           +TD  ++ +K++ A E +    +LR+ V  GGCSGFQYA   D  +   D +FE DGVK+
Sbjct: 12  VTDKAVEEIKKV-AQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKV 70
Query: 117 VVDNISYDFVKGATVDYVEELIRSAFVVRH 146
           V+D  S  +V GA +DYV + +   F +R+
Sbjct: 71  VIDPFSMPYVNGAELDYVVDFMGGGFTIRN 100

>pdb|2APN|A Chain A, Hi1723 Solution Structure Length = 114

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
           +  TD    ++K L  SE  +    LR+ +  GGCSGFQY F  D K+N  D   EK GV
Sbjct: 9   LTFTDAAANKVKSL-ISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGV 67
Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVRH 146
           +LV+D +S  ++ G TVDY E L  S F V +
Sbjct: 68  QLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNN 99

>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative) Length = 118

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 54  SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           SI ++D+   R+    A+        LRLGV T GCSG  Y  +   +  P+D +FE  G
Sbjct: 2   SITLSDSAAARVNTFLANRG--KGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59
Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAF 142
           VK+VVD  S  F+ G  +D+V+E +   F
Sbjct: 60  VKVVVDGKSLQFLDGTQLDFVKEGLNEGF 88

>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A Length = 107

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 54  SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           SI ++D+   R+    A+        LRLGV T GCSG  Y  +   +  P+D +FE  G
Sbjct: 2   SITLSDSAAARVNTFLANRGK--GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59
Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAF 142
           VK+VVD  S  F+ G  +D+V+E +   F
Sbjct: 60  VKVVVDGKSMQFLDGTQLDFVKEGLNEGF 88

>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In Biosynthesis Of Iron-Sulfur Clusters Length = 145

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 80  LRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIR 139
           +RLGV+  GC+GF Y  D   + + DD +FE DG KL V   +  F+ G  VD+V E + 
Sbjct: 64  VRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLN 123
Query: 140 SAF 142
             F
Sbjct: 124 QIF 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	4e-36
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	4e-36
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	1e-35
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	8e-33
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	2e-31
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	9e-31

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1 Length = 124

 Score =  120 bits (303), Expect = 4e-36
 Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             +TD  ++ +K++      +N  +LR+ V  GGCSGFQYA   D  +   D +FE DGV
Sbjct: 10  FKVTDKAVEEIKKVAQENNIEN-PILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGV 68

Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVR 145
           K+V+D  S  +V GA +DYV + +   F +R
Sbjct: 69  KVVIDPFSMPYVNGAELDYVVDFMGGGFTIR 99

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} Length = 112

 Score =  120 bits (302), Expect = 4e-36
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 55  IHMTDNFIKRMKELQASETSDNKA-MLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           + +T   I+ ++ LQ       +A +LR+ V+   C  ++Y   L  +  P D + +  G
Sbjct: 2   VELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQG 61

Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVR 145
             + +   + + ++G  VDY+E+L+  AF   
Sbjct: 62  WTIAIAAEAAELLRGLRVDYIEDLMGGAFRFH 93

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} Length = 114

 Score =  118 bits (299), Expect = 1e-35
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 54  SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
            +  TD    ++K L + E + +   LR+ +  GGCSGFQY F  D K+N  D   EK G
Sbjct: 8   PLTFTDAAANKVKSLISEEENTD-LKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSG 66

Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVR 145
           V+LV+D +S  ++ G TVDY E L  S F V 
Sbjct: 67  VQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVN 98

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} Length = 145

 Score =  112 bits (283), Expect = 8e-33
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 18  RQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNK 77
             +H   SS          +  S   + +  +     + +T      ++EL A +     
Sbjct: 6   HHHHHHHSSGHIDDDDLHMDMHSGTFNPQDFAWQ--GLTLTPAAAIHIRELVAKQ--PGM 61

Query: 78  AMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEEL 137
             +RLGV+  GC+GF Y  D   + + DD +FE DG KL V   +  F+ G  VD+V E 
Sbjct: 62  VGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREG 121

Query: 138 IRSAFVVR 145
           +   F   
Sbjct: 122 LNQIFKFH 129

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A Length = 118

 Score =  108 bits (272), Expect = 2e-31
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 54  SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           SI ++D+   R+    A+        LRLGV T GCSG  Y  +   +  P+D +FE  G
Sbjct: 2   SITLSDSAAARVNTFLANR--GKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59

Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFV 143
           VK+VVD  S  F+ G  +D+V+E +   F 
Sbjct: 60  VKVVVDGKSLQFLDGTQLDFVKEGLNEGFK 89

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} Length = 125

 Score =  107 bits (268), Expect = 9e-31
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 3/104 (2%)

Query: 43  SSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKI 102
           SS   P  S     +T    +++ +      ++    LRL           Y    D  +
Sbjct: 11  SSGLVPRGSHMMFKLTPAAAEQVLKAAKQGGTEG-MCLRLAAGRNPDGSIDYRMGFD-DL 68

Query: 103 NPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELI-RSAFVVR 145
             DD     +GV++V+       +   T+DYVE    +  F+  
Sbjct: 69  TEDDIRLTSEGVEIVIAPDYVSLLDQTTLDYVELEPGQFHFIFL 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	99.97
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	99.97
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	99.97
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	99.96
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	99.96
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	99.95
2p2e_A	128	Putative Fe-S biosynthesis protein; hypothetical p	99.85
2qgo_A	141	Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC	99.84

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A

Probab=99.97  E-value=3.8e-31  Score=195.99  Aligned_cols=99  Identities=33%  Similarity=0.551  Sum_probs=92.1

Q ss_pred             ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEE
Q 031290           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD  132 (162)
Q Consensus        53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tID  132 (162)
                      |+|+|||+|+++|+++++.++  ++.+|||+|+++||+||+|.|.++++++++|.+++.+|++|+||+.+++||+|++||
T Consensus         1 M~I~iT~~A~~~l~~ll~~~~--~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L~g~~ID   78 (118)
T 1r94_A            1 MSITLSDSAAARVNTFLANRG--KGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLD   78 (118)
T ss_dssp             CCCEECHHHHHHHHHHHHHHC--CCSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEE
T ss_pred             CceEECHHHHHHHHHHHhhCC--CCceEEEEEECCCCCCeEEEEEEccCCCCCceEEEECCEEEEEEHHHHHHhCCCEEE
Confidence            789999999999999998774  357899999999999999999999888999999999999999999999999999999


Q ss_pred             eeecCCcceEEEecCccceeE
Q 031290          133 YVEELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       133 y~e~~~g~gF~i~np~~~~~~  153 (162)
                      |++++++++|+|.|||..+-|
T Consensus        79 y~~~~~g~gF~~~NPna~~~C   99 (118)
T 1r94_A           79 FVKEGLNEGFKFTNPNVKDEC   99 (118)
T ss_dssp             EEEETTEEEEEEECTTCCC--
T ss_pred             EEcCCCcCceEEeCCCCCCCC
Confidence            999999999999999997765

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1

Probab=99.97  E-value=6.1e-31  Score=196.50  Aligned_cols=101  Identities=34%  Similarity=0.623  Sum_probs=89.7

Q ss_pred             CceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEE
Q 031290           52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV  131 (162)
Q Consensus        52 ~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tI  131 (162)
                      .|+|+||++|+++|+++++.++. ++.+|||+|+++||+||+|.|.++++++++|.+++.+|++|+||+.+++||+|++|
T Consensus         7 ~m~I~iT~~A~~~l~~ll~~~~~-~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~I   85 (124)
T 1nwb_A            7 QFIFKVTDKAVEEIKKVAQENNI-ENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAEL   85 (124)
T ss_dssp             CCCCEECHHHHHHHHHHHHTTTC-SSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEE
T ss_pred             CceEEECHHHHHHHHHHHhhCCC-CCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeCCEEEEEehHHHHHhCCCEE
Confidence            38999999999999999987752 46789999999999999999999998888999999999999999999999999999


Q ss_pred             EeeecCCcceEEEecCccceeE
Q 031290          132 DYVEELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       132 Dy~e~~~g~gF~i~np~~~~~~  153 (162)
                      ||++++++++|+|+|||..+-|
T Consensus        86 Dy~~~~~g~gF~~~NPna~~~C  107 (124)
T 1nwb_A           86 DYVVDFMGGGFTIRNPNATGSC  107 (124)
T ss_dssp             EEEEETTEEEEEEECC------
T ss_pred             EEEcCCCcceEEEeCCCCCcCC
Confidence            9999999999999999987655

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}

Probab=99.97  E-value=2.9e-30  Score=197.98  Aligned_cols=101  Identities=30%  Similarity=0.484  Sum_probs=94.5

Q ss_pred             CCceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcE
Q 031290           51 SLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGAT  130 (162)
Q Consensus        51 ~~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~t  130 (162)
                      .||.|+|||+|+++|++++++++  ++.+|||+|+++||+||+|.|.++++++++|.+++.+|++|+||+.+++||+|++
T Consensus        37 ~~m~ItiTe~Aa~~lk~ll~~~~--~~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~  114 (145)
T 2d2a_A           37 AWQGLTLTPAAAIHIRELVAKQP--GMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTE  114 (145)
T ss_dssp             CCCCCEECHHHHHHHHHHHHHST--TCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCE
T ss_pred             ccceEEECHHHHHHHHHHHhcCC--CCceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEECCEEEEEeHHHHHhhCCCE
Confidence            36889999999999999998764  3578999999999999999999998888999999999999999999999999999


Q ss_pred             EEeeecCCcceEEEecCccceeE
Q 031290          131 VDYVEELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       131 IDy~e~~~g~gF~i~np~~~~~~  153 (162)
                      |||++++++++|+|+|||..+-|
T Consensus       115 IDy~e~l~g~gF~f~NPna~~~C  137 (145)
T 2d2a_A          115 VDFVREGLNQIFKFHNPKAQNEC  137 (145)
T ss_dssp             EEEEEETTEEEEEEECTTTCSCC
T ss_pred             EEEEcCCCcceEEEeCCCCCccc
Confidence            99999999999999999987655

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}

Probab=99.96  E-value=1e-30  Score=191.68  Aligned_cols=99  Identities=22%  Similarity=0.433  Sum_probs=87.6

Q ss_pred             eeeeCHHHHHHHHHHHhcc-CCCC-CceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEE
Q 031290           54 SIHMTDNFIKRMKELQASE-TSDN-KAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV  131 (162)
Q Consensus        54 ~ItIT~~Aa~~lk~ll~~~-~~~~-~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tI  131 (162)
                      ||+||++|+++|+++++.+ +. + +.+|||+|+++||+||+|.|.++++++++|.+++.+|++|+||+.+++||+|++|
T Consensus         1 mi~iT~~A~~~l~~ll~~~~~~-~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~l~g~~I   79 (112)
T 1x0g_A            1 MVELTPAAIQELERLQTHGVRR-GQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRV   79 (112)
T ss_dssp             CCEECHHHHHHTCCCC-----------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSSSCCEEECGGGHHHHTTCEE
T ss_pred             CeEECHHHHHHHHHHHhhccCC-CCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeCCEEEEEeHHHHHHhCCCEE
Confidence            6999999999999999876 42 3 5689999999999999999999998889999999999999999999999999999


Q ss_pred             EeeecCCcceEEEecCccceeE
Q 031290          132 DYVEELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       132 Dy~e~~~g~gF~i~np~~~~~~  153 (162)
                      ||++++++++|+|+|||..+-|
T Consensus        80 Dy~~~~~g~gF~~~nPna~~~C  101 (112)
T 1x0g_A           80 DYIEDLMGGAFRFHNPNASQTC  101 (112)
T ss_dssp             EEEEETTEEEEEEECTTCSEEC
T ss_pred             EEEecCCCCEEEEeCCCCCcCC
Confidence            9999999999999999987765

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}

Probab=99.96  E-value=3.5e-30  Score=189.24  Aligned_cols=100  Identities=39%  Similarity=0.604  Sum_probs=93.0

Q ss_pred             ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEE
Q 031290           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD  132 (162)
Q Consensus        53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tID  132 (162)
                      |+|+|||+|+++|+++++.++. ++.+|||+|+++||+|++|.|.++++++++|++++.+|++|+||+.+++||+|++||
T Consensus         7 ~~i~iT~~A~~~i~~l~~~~~~-~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~id~~s~~~l~g~~ID   85 (114)
T 2apn_A            7 VPLTFTDAAANKVKSLISEEEN-TDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVD   85 (114)
T ss_dssp             CSCEECSHHHHHHHHHHHHHTC-SSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTCEEE
T ss_pred             CcEEECHHHHHHHHHHHHhCCC-CCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEECCEEEEEehHHHHHhCCCEEE
Confidence            6799999999999999987752 467999999999999999999999987889999999999999999999999999999


Q ss_pred             eeecCCcceEEEecCccceeE
Q 031290          133 YVEELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       133 y~e~~~g~gF~i~np~~~~~~  153 (162)
                      |++++.+++|+|+|||..+-|
T Consensus        86 y~~~~~g~~F~~~nPna~~~C  106 (114)
T 2apn_A           86 YTEGLEGSRFTVNNPNATSTC  106 (114)
T ss_dssp             EECSSSCCEEEEECHHHHCCC
T ss_pred             EEcCCCcceEEEeCCCCCcCC
Confidence            999999999999999987654

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}

Probab=99.95  E-value=1.4e-27  Score=178.78  Aligned_cols=100  Identities=20%  Similarity=0.228  Sum_probs=91.4

Q ss_pred             CCCceeeeCHHHHHHHHHHHhccCCCCCceEEEEEe--cCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccC
Q 031290           50 PSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVE--TGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVK  127 (162)
Q Consensus        50 ~~~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~--~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~  127 (162)
                      +.+|+|+||++|+++|++++++++. ++.+|||+|+  ++|  ||+|.|.++++ +++|.+++.+|++|+||+.+++||+
T Consensus        18 ~~~m~ItiT~~Aa~~ik~ll~~~~~-~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~Gv~v~VD~~s~~~L~   93 (125)
T 2k4z_A           18 GSHMMFKLTPAAAEQVLKAAKQGGT-EGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSEGVEIVIAPDYVSLLD   93 (125)
T ss_dssp             CCSSCEEECHHHHHHHHHHHHHSSS-TTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECSSCEEECCTTTHHHHT
T ss_pred             CCCCEEEECHHHHHHHHHHHhhCCC-CCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEECCEEEEEeHHHHHhhC
Confidence            4459999999999999999987752 4578999999  888  99999999987 8899999999999999999999999


Q ss_pred             CcEEEeee-cCCcceEEEecCccceeE
Q 031290          128 GATVDYVE-ELIRSAFVVRHFLLLSVF  153 (162)
Q Consensus       128 G~tIDy~e-~~~g~gF~i~np~~~~~~  153 (162)
                      |++|||++ ++.+++|+|+|||..+.|
T Consensus        94 G~~IDy~~~~l~g~gF~~~NPna~~~~  120 (125)
T 2k4z_A           94 QTTLDYVELEPGQFHFIFLNPRDPTYR  120 (125)
T ss_dssp             TEEEEEEEEETTEEEEEEECSSSCSSC
T ss_pred             CCEEEEEeCCCCcCeEEECCCCCCccC
Confidence            99999999 999999999999987643

>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1

Probab=99.85  E-value=6.9e-22  Score=148.42  Aligned_cols=97  Identities=11%  Similarity=0.051  Sum_probs=87.4

Q ss_pred             ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecC-------CCCC-cEEEEEecCCCCC----CcEEEEECCeEEEEcC
Q 031290           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETG-------GCSG-FQYAFDLDYKINP----DDRIFEKDGVKLVVDN  120 (162)
Q Consensus        53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~g-------GCsG-~~Y~l~l~~~~~~----dD~v~e~~Gi~v~VD~  120 (162)
                      |.|+||++|+++|+++++.++  ...+||+. +++       ||+| ++|.|.+++++++    +|++++.+|++|+||+
T Consensus         3 M~ItlT~~A~~~l~~~l~~~~--~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~g~~v~vd~   79 (128)
T 2p2e_A            3 LKITVTDDAAKKLQRYTDDSN--AVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKG   79 (128)
T ss_dssp             CEEEECHHHHHHHHHHHTCTT--EEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECG
T ss_pred             cEEEECHHHHHHHHHHHhcCC--ceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeCCEEEEECc
Confidence            789999999999999998764  23689999 666       7999 5999999988877    8999999999999999


Q ss_pred             CcccccCC-cEEEeeecC----Ccce-EEEecCcccee
Q 031290          121 ISYDFVKG-ATVDYVEEL----IRSA-FVVRHFLLLSV  152 (162)
Q Consensus       121 ~s~~~L~G-~tIDy~e~~----~g~g-F~i~np~~~~~  152 (162)
                      .++.||+| ++|||+++.    ++++ |.|.|||...+
T Consensus        80 ~s~~~ldgg~~iDy~~~~~~l~L~s~~f~~~NPN~~~~  117 (128)
T 2p2e_A           80 YSKMYMDDNMKISLNTNNSLLRLTGDNSGELMPALSIQ  117 (128)
T ss_dssp             GGGGGSCSEEEEEECSSSSCEEEEETTTEEEEEEECEE
T ss_pred             chHHhhCCCeEEEEeCCCceEEecCCccEEECCCCeec
Confidence            99999996 999999998    8999 99999998753

>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}

Probab=99.84  E-value=1.1e-21  Score=149.74  Aligned_cols=92  Identities=21%  Similarity=0.342  Sum_probs=74.7

Q ss_pred             CCceeeeCHHHHHHHHHHHhccCCCCCceE-------EEEEecCCCC-CcEEEEEecCCCCCC-cEEEEEC-CeEEEEcC
Q 031290           51 SLDSIHMTDNFIKRMKELQASETSDNKAML-------RLGVETGGCS-GFQYAFDLDYKINPD-DRIFEKD-GVKLVVDN  120 (162)
Q Consensus        51 ~~~~ItIT~~Aa~~lk~ll~~~~~~~~~~L-------Rl~v~~gGCs-G~~Y~l~l~~~~~~d-D~v~e~~-Gi~v~VD~  120 (162)
                      .||.|+||++|++||++++..++   ..+|       |+.+++|||+ |++|.|.+++++.++ |.+++.+ |++|+||+
T Consensus         2 ~~M~ItlTd~Aa~~ik~~l~~~~---~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~gGv~v~Vd~   78 (141)
T 2qgo_A            2 SLLNIKFTDNAVDYLKRREILDK---ILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSD   78 (141)
T ss_dssp             --CBEEECHHHHHHHHHTTCTTS---EEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECH
T ss_pred             cceEEEECHHHHHHHHHHHhhcc---ceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeCCCEEEEECc
Confidence            47999999999999999998763   5689       9999999999 999999999988889 9999999 59999999


Q ss_pred             CcccccC-CcEEEeeecCCcceEEEecCcc
Q 031290          121 ISYDFVK-GATVDYVEELIRSAFVVRHFLL  149 (162)
Q Consensus       121 ~s~~~L~-G~tIDy~e~~~g~gF~i~np~~  149 (162)
                      .+++||+ |++|||+++    .|.+++|..
T Consensus        79 ~sl~yLd~G~~IDy~~~----~l~Lks~sg  104 (141)
T 2qgo_A           79 FDKTMLGPNMVMDYNAG----SLSLSSDEG  104 (141)
T ss_dssp             HHHTTSCSSEEEEEETT----EEEEEETTE
T ss_pred             hHHHHhcCCCEEeEECC----EEEEcCCCc
Confidence            9999999 999999964    888887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1s98a_	97	b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {	9e-22
d1nwba_	101	b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquif	5e-21

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

 Score = 81.9 bits (202), Expect = 9e-22
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 54  SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           SI ++D+   R+    A+        LRLGV T GCSG  Y  +   +  P+D +FE  G
Sbjct: 1   SITLSDSAAARVNTFLANR--GKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 58

Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVR 145
           VK+VVD  S  F+ G  +D+V+E +   F   
Sbjct: 59  VKVVVDGKSMQFLDGTQLDFVKEGLNEGFKFT 90

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

 Score = 80.2 bits (197), Expect = 5e-21
 Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             +TD  ++ +K++      +N  +LR+ V  GGCSGFQYA   D  +   D +FE DGV
Sbjct: 10  FKVTDKAVEEIKKVAQENNIENP-ILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGV 68

Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVR 145
           K+V+D  S  +V GA +DYV + +   F +R
Sbjct: 69  KVVIDPFSMPYVNGAELDYVVDFMGGGFTIR 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1s98a_	97	Fe-S scaffold protein IscA (YfhF) {Escherichia col	99.97
d1nwba_	101	Hypothetical protein Aq_1857 {Aquifex aeolicus [Ta	99.96
d2p2ea1	118	Putative Fe-S biosynthesis protein LSL1730 {Lactob	98.95

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2e-30  Score=184.35  Aligned_cols=96  Identities=34%  Similarity=0.587  Sum_probs=90.5

Q ss_pred             eeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEEEe
Q 031290           54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDY  133 (162)
Q Consensus        54 ~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tIDy  133 (162)
                      .|+||++|+++|++++++++  ++.+|||+|+++||+||+|.|.++++++++|.+++.+|++|+||+.++.||+|++|||
T Consensus         1 ~I~iT~~A~~~i~~ll~~~~--~~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~G~~IDy   78 (97)
T d1s98a_           1 SITLSDSAAARVNTFLANRG--KGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDF   78 (97)
T ss_dssp             CCEECHHHHHHHHHHHHTTC--CCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEE
T ss_pred             CEEECHHHHHHHHHHHHhCC--CCcEEEEEEEcCCCCcceEEeeecccCCCCcEEEEcCCCEEEEeHHHHHHhCCCEEEE
Confidence            38999999999999998775  4678999999999999999999999889999999999999999999999999999999


Q ss_pred             eecCCcceEEEecCccce
Q 031290          134 VEELIRSAFVVRHFLLLS  151 (162)
Q Consensus       134 ~e~~~g~gF~i~np~~~~  151 (162)
                      ++++++++|+|+|||..+
T Consensus        79 ~~~~~~~gF~f~NPNak~   96 (97)
T d1s98a_          79 VKEGLNEGFKFTNPNVKD   96 (97)
T ss_dssp             ECSSTTCEEEEECTTSCC
T ss_pred             eecCCcCceEEECCCCCC
Confidence            999999999999999764

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.96  E-value=8.2e-30  Score=182.07  Aligned_cols=95  Identities=36%  Similarity=0.680  Sum_probs=89.9

Q ss_pred             CceeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCcEEEEEecCCCCCCcEEEEECCeEEEEcCCcccccCCcEE
Q 031290           52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV  131 (162)
Q Consensus        52 ~~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~~gGCsG~~Y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~G~tI  131 (162)
                      ..||+||++|+++|+++++.++ .++.+|||.|+++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|
T Consensus         7 ~~mi~iT~~A~~~i~~l~~~~~-~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~D~v~~~~g~~i~id~~s~~~L~G~~I   85 (101)
T d1nwba_           7 QFIFKVTDKAVEEIKKVAQENN-IENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAEL   85 (101)
T ss_dssp             CCCCEECHHHHHHHHHHHHTTT-CSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEE
T ss_pred             CCcEEECHHHHHHHHHHHHhcC-CCCceEEEEEeCCCCCceeEEEeeccccccCceEEecCCeeEEECHHHHhHhCCCEE
Confidence            4799999999999999998775 356899999999999999999999988889999999999999999999999999999


Q ss_pred             EeeecCCcceEEEecC
Q 031290          132 DYVEELIRSAFVVRHF  147 (162)
Q Consensus       132 Dy~e~~~g~gF~i~np  147 (162)
                      ||++++.+++|+|+||
T Consensus        86 Dy~~~~~~~~F~f~NP  101 (101)
T d1nwba_          86 DYVVDFMGGGFTIRNP  101 (101)
T ss_dssp             EEEEETTEEEEEEECC
T ss_pred             EEeecCCCCeEEEeCc
Confidence            9999999999999998

>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Putative Fe-S biosynthesis protein LSL1730
species: Lactobacillus salivarius [TaxId: 1624]

Probab=98.95  E-value=3.4e-09  Score=76.54  Aligned_cols=90  Identities=16%  Similarity=0.181  Sum_probs=72.4

Q ss_pred             ceeeeCHHHHHHHHHHHhccCCCCCceEEEEEe--------cCCCC-CcEEEEEecCC----CCCCcEEEEECCeEEEEc
Q 031290           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVE--------TGGCS-GFQYAFDLDYK----INPDDRIFEKDGVKLVVD  119 (162)
Q Consensus        53 ~~ItIT~~Aa~~lk~ll~~~~~~~~~~LRl~v~--------~gGCs-G~~Y~l~l~~~----~~~dD~v~e~~Gi~v~VD  119 (162)
                      |.||||++|+++|++.+...    .+.|.|.++        +|||+ |-.|.|.+.++    ..+.|+.++.+-.+|++.
T Consensus         1 M~ItiT~~A~~~L~~~~~~~----~~~L~L~~dDG~g~yS~gggC~i~g~f~L~~v~~~~~~~~~yd~~iesn~g~i~~~   76 (118)
T d2p2ea1           1 LKITVTDDAAKKLQRYTDDS----NAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYK   76 (118)
T ss_dssp             CEEEECHHHHHHHHHHHTCT----TEEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEEC
T ss_pred             CEEEECHHHHHHHHHhhCCC----CCEEEEEEeCCCCccccCCccccCCEEEEEEEeCCCCCCcccceeecCCCccEEEc
Confidence            78999999999999998754    246777766        57887 55788888754    235679999987799999


Q ss_pred             CCcccccCC-cEEEeeecCCcceEEEecCc
Q 031290          120 NISYDFVKG-ATVDYVEELIRSAFVVRHFL  148 (162)
Q Consensus       120 ~~s~~~L~G-~tIDy~e~~~g~gF~i~np~  148 (162)
                      +....|+++ ++|||.+..  ..|.+++|+
T Consensus        77 ~~~~~ffd~~m~ld~~~~~--~~l~LkSd~  104 (118)
T d2p2ea1          77 GYSKMYMDDNMKISLNTNN--SLLRLTGDN  104 (118)
T ss_dssp             GGGGGGSCSEEEEEECSSS--SCEEEEETT
T ss_pred             ccchhhcCCCcEEEEcCCC--CEEEEeCCC
Confidence            999999986 899998753  678888764