Citrus Sinensis ID: 031294

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH
ccccccHHHHcHHHHHHccccccccccccccccccccccccccccEEEEEccEEEEcccHHHHHHcccEEEEEccccccEEEccccEEEEEEEEEcccccccccEEEEEEcccccccccccccccccccEEEEEEEccHHHHHccccHHHHHHHHHHHHccc
cHHHHHHHHHHHHccccccccccHHHHHHHHcccccccEEccccEEEEEEccEEEEEEcHHHHHHHccEEEEEccccccEEcEccEEEEEEEcccEEEEEEcccEEEEEEccHHHHcccHHHHccccccccEEEEEccHHHHHHcEcHHHHHHHHHHHHccc
MALRMWASSTANALRISCAsktpafalSRCFSSVLDGlkyasshewvkhegsvatVGITDHAQDHLGEVVFVElpetgasvkqgggfGVVESVkatsdvnspisgeVIEVNtkltetpglvnsspyeegwlikvkpsspsdleslmdpqaYTKFCEEENAAH
MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVkatsdvnspisgevievntkltetpglvnsspyeegWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH
MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH
*********TANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKA*******ISGEVIEVNTKLTET*GLV****YEEGWLIK*****************************
*****************CA***PAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYT**********
***********NALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH
*****WASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query162 2.2.26 [Sep-21-2011]
Q39732162 Glycine cleavage system H N/A no 1.0 1.0 0.790 6e-73
P49359162 Glycine cleavage system H N/A no 1.0 1.0 0.777 6e-72
A3C6G9164 Glycine cleavage system H yes no 0.987 0.975 0.760 3e-70
A2Z9B8164 Glycine cleavage system H N/A no 0.987 0.975 0.760 3e-70
P46485165 Glycine cleavage system H N/A no 0.993 0.975 0.773 2e-69
P16048165 Glycine cleavage system H N/A no 1.0 0.981 0.775 1e-68
Q9LQL0166 Probable glycine cleavage yes no 1.0 0.975 0.765 2e-68
P49360152 Glycine cleavage system H N/A no 0.938 1.0 0.789 6e-67
P93255163 Glycine cleavage system H N/A no 0.981 0.975 0.754 1e-66
P25855165 Glycine cleavage system H no no 1.0 0.981 0.739 2e-65
>sp|Q39732|GCSH_FLAAN Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1 Back     alignment and function desciption
 Score =  272 bits (696), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 128/162 (79%), Positives = 147/162 (90%)

Query: 1   MALRMWASSTANALRISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITD 60
           MALRMWASSTANALR+S A++     LSRCFSSVLDGLKYA+SHEWVKHEGSVAT+GITD
Sbjct: 1   MALRMWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITD 60

Query: 61  HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGL 120
           HAQDHLGEVVFV+LPE G SV +  GFG VESVKATSDVNSPISGE++EVN+KL+ETPGL
Sbjct: 61  HAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGL 120

Query: 121 VNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 162
           +NSSPYE+GW+IKVKPS+PS+L+SLM  + YTKFCEEE+AAH
Sbjct: 121 INSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162
The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
Flaveria anomala (taxid: 35877)
>sp|P49359|GCSH_FLAPR Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1 Back     alignment and function description
>sp|A3C6G9|GCSH_ORYSJ Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1 Back     alignment and function description
>sp|A2Z9B8|GCSH_ORYSI Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1 Back     alignment and function description
>sp|P46485|GCSH_FLATR Glycine cleavage system H protein, mitochondrial OS=Flaveria trinervia GN=GDCSH PE=2 SV=1 Back     alignment and function description
>sp|P16048|GCSH_PEA Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 SV=1 Back     alignment and function description
>sp|Q9LQL0|GCSH2_ARATH Probable glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=At1g32470 PE=1 SV=1 Back     alignment and function description
>sp|P49360|GCSH_FLAPU Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria pubescens GN=GDCSH PE=2 SV=1 Back     alignment and function description
>sp|P93255|GCSH_MESCR Glycine cleavage system H protein, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCSH PE=2 SV=1 Back     alignment and function description
>sp|P25855|GCSH1_ARATH Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSH PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query162
225427234165 PREDICTED: glycine cleavage system H pro 1.0 0.981 0.830 2e-76
147770018165 hypothetical protein VITISV_038357 [Viti 1.0 0.981 0.824 3e-76
255557631165 glycine cleavage system h protein, putat 1.0 0.981 0.806 6e-73
388509560166 unknown [Lotus japonicus] 1.0 0.975 0.783 2e-72
449461527165 PREDICTED: glycine cleavage system H pro 1.0 0.981 0.781 6e-72
437993162 H-protein [Flaveria cronquistii] gi|4379 1.0 1.0 0.796 9e-72
3688309162 H-Protein precursor [Flaveria pringlei] 1.0 1.0 0.796 2e-71
2499417162 RecName: Full=Glycine cleavage system H 1.0 1.0 0.790 3e-71
547500161 H-protein [Flaveria pringlei] 0.993 1.0 0.795 1e-70
351721381199 uncharacterized protein LOC100306654 [Gl 1.0 0.814 0.769 1e-70
>gi|225427234|ref|XP_002280707.1| PREDICTED: glycine cleavage system H protein, mitochondrial isoform 1 [Vitis vinifera] gi|297742112|emb|CBI33899.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/165 (83%), Positives = 154/165 (93%), Gaps = 3/165 (1%)

Query: 1   MALRMWASSTANALRISCASK---TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
           MALRMWASSTANALR+SCASK   +PAF+LSRCFSSVLDGLKYA+SHEWVKHEGSVAT+G
Sbjct: 1   MALRMWASSTANALRVSCASKAHVSPAFSLSRCFSSVLDGLKYATSHEWVKHEGSVATIG 60

Query: 58  ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
           ITDHAQDHLGEVVFVE+PE G SV +G GFG VESVKATSDVNSPISGEV+EVN+KL+E 
Sbjct: 61  ITDHAQDHLGEVVFVEIPEPGGSVSKGNGFGAVESVKATSDVNSPISGEVVEVNSKLSEA 120

Query: 118 PGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 162
           PGL+NSSPYE+GW+IKVKPS+PS+LESLM P+ YTKFCEEE+AAH
Sbjct: 121 PGLINSSPYEDGWMIKVKPSNPSELESLMGPKEYTKFCEEEDAAH 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147770018|emb|CAN76620.1| hypothetical protein VITISV_038357 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255557631|ref|XP_002519845.1| glycine cleavage system h protein, putative [Ricinus communis] gi|223540891|gb|EEF42449.1| glycine cleavage system h protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388509560|gb|AFK42846.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449461527|ref|XP_004148493.1| PREDICTED: glycine cleavage system H protein, mitochondrial-like [Cucumis sativus] gi|449513621|ref|XP_004164375.1| PREDICTED: glycine cleavage system H protein, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|437993|emb|CAA81073.1| H-protein [Flaveria cronquistii] gi|437999|emb|CAA81074.1| H-protein [Flaveria pringlei] gi|3688299|emb|CAB16912.1| H-protein [Flaveria pringlei] Back     alignment and taxonomy information
>gi|3688309|emb|CAB16914.1| H-Protein precursor [Flaveria pringlei] Back     alignment and taxonomy information
>gi|2499417|sp|Q39732.1|GCSH_FLAAN RecName: Full=Glycine cleavage system H protein, mitochondrial; Flags: Precursor gi|547558|emb|CAA85761.1| H-protein [Flaveria anomala] Back     alignment and taxonomy information
>gi|547500|emb|CAA85759.1| H-protein [Flaveria pringlei] Back     alignment and taxonomy information
>gi|351721381|ref|NP_001238231.1| uncharacterized protein LOC100306654 [Glycine max] gi|255629191|gb|ACU14940.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query162
UNIPROTKB|P16048165 GDCSH "Glycine cleavage system 1.0 0.981 0.775 1.1e-66
TAIR|locus:2033802166 AT1G32470 "AT1G32470" [Arabido 1.0 0.975 0.783 1.1e-66
TAIR|locus:2062435165 GDCH "AT2G35370" [Arabidopsis 1.0 0.981 0.751 3.3e-63
TAIR|locus:2063464156 AT2G35120 "AT2G35120" [Arabido 0.950 0.987 0.640 5.2e-49
POMBASE|SPBP19A11.01169 gcv3 "glycine decarboxylase co 0.993 0.952 0.469 9.5e-34
TIGR_CMR|CHY_0490130 CHY_0490 "glycine cleavage sys 0.783 0.976 0.503 2.3e-32
WB|WBGene00009918146 F52A8.5 [Caenorhabditis elegan 0.777 0.863 0.515 1.6e-31
UNIPROTKB|P0A6T9129 gcvH [Escherichia coli K-12 (t 0.783 0.984 0.515 3.3e-31
TIGR_CMR|SO_0780129 SO_0780 "glycine cleavage syst 0.783 0.984 0.531 8.8e-31
WB|WBGene00008354148 gcsh-1 [Caenorhabditis elegans 0.783 0.858 0.480 1.1e-30
UNIPROTKB|P16048 GDCSH "Glycine cleavage system H protein, mitochondrial" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms
 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 128/165 (77%), Positives = 147/165 (89%)

Query:     1 MALRMWASSTANALRISCASK---TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVG 57
             MALRMWASSTANAL++S +S+   +P F++SRCFS+VLDGLKYA SHEWVKHEGSVAT+G
Sbjct:     1 MALRMWASSTANALKLSSSSRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIG 60

Query:    58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117
             ITDHAQDHLGEVVFVELPE G SV +G GFG VESVKATSDVNSPISGEVIEVNT LT  
Sbjct:    61 ITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGK 120

Query:   118 PGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 162
             PGL+NSSPYE+GW+IK+KP+SP +LESL+  + YTKFCEEE+AAH
Sbjct:   121 PGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH 165
GO:0005960 "glycine cleavage complex" evidence=IDA
TAIR|locus:2033802 AT1G32470 "AT1G32470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062435 GDCH "AT2G35370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063464 AT2G35120 "AT2G35120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBP19A11.01 gcv3 "glycine decarboxylase complex subunit H (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0490 CHY_0490 "glycine cleavage system H protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
WB|WBGene00009918 F52A8.5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6T9 gcvH [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0780 SO_0780 "glycine cleavage system H protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
WB|WBGene00008354 gcsh-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39732GCSH_FLAANNo assigned EC number0.79011.01.0N/Ano
Q6GB23GCSH_STAASNo assigned EC number0.50400.75920.9761yesno
A7FF20GCSH_YERP3No assigned EC number0.52340.78390.9921yesno
P49359GCSH_FLAPRNo assigned EC number0.77771.01.0N/Ano
Q1CEZ8GCSH_YERPNNo assigned EC number0.52340.78390.9921yesno
A1S966GCSH_SHEAMNo assigned EC number0.52710.79010.9922yesno
Q5I0P2GCSH_RATNo assigned EC number0.46340.95060.9058yesno
P46485GCSH_FLATRNo assigned EC number0.77300.99380.9757N/Ano
A2Z9B8GCSH_ORYSINo assigned EC number0.76070.98760.9756N/Ano
B2K0Q4GCSH_YERPBNo assigned EC number0.52340.78390.9921yesno
Q9LQL0GCSH2_ARATHNo assigned EC number0.76501.00.9759yesno
B8JDY7GCSH_ANAD2No assigned EC number0.53960.77770.9843yesno
P49360GCSH_FLAPUNo assigned EC number0.78940.93821.0N/Ano
A7HQX9GCSH_PARL1No assigned EC number0.51260.73450.952yesno
Q6GII3GCSH_STAARNo assigned EC number0.51210.75920.9761yesno
A4TIA6GCSH_YERPPNo assigned EC number0.52340.78390.9921yesno
Q9WY55GCSH_THEMANo assigned EC number0.53330.74070.9677yesno
Q1AR90GCSH_RUBXDNo assigned EC number0.54260.77771.0yesno
A5IR11GCSH_STAA9No assigned EC number0.51210.75920.9761yesno
A7X019GCSH_STAA1No assigned EC number0.51210.75920.9761yesno
P93255GCSH_MESCRNo assigned EC number0.75460.98140.9754N/Ano
Q9HDV9GCSH_SCHPONo assigned EC number0.54470.75920.7278yesno
A1JPN4GCSH_YERE8No assigned EC number0.54680.78390.9921yesno
A6TZT7GCSH_STAA2No assigned EC number0.51210.75920.9761yesno
B1JNS7GCSH_YERPYNo assigned EC number0.52340.78390.9921yesno
A3C6G9GCSH_ORYSJNo assigned EC number0.76070.98760.9756yesno
Q1QWJ4GCSH_CHRSDNo assigned EC number0.54910.74690.9236yesno
Q1CB43GCSH_YERPANo assigned EC number0.52340.78390.9921yesno
Q6D975GCSH_ERWCTNo assigned EC number0.53480.79010.9846yesno
A9R4K7GCSH_YERPGNo assigned EC number0.52340.78390.9921yesno
Q8NXH7GCSH_STAAWNo assigned EC number0.50400.75920.9761yesno
P16048GCSH_PEANo assigned EC number0.77571.00.9818N/Ano
Q8ZHI7GCSH_YERPENo assigned EC number0.52340.78390.9921yesno
Q67N37GCSH_SYMTHNo assigned EC number0.550.74070.9375yesno
Q8D7G6GCSH_VIBVUNo assigned EC number0.51630.74690.9603yesno
P64214GCSH_STAANNo assigned EC number0.51210.75920.9761yesno
Q2YWP4GCSH_STAABNo assigned EC number0.51210.75920.9761yesno
B4UGZ2GCSH_ANASKNo assigned EC number0.53960.77770.9843yesno
P64213GCSH_STAAMNo assigned EC number0.51210.75920.9761yesno
Q0VLA7GCSH_ALCBSNo assigned EC number0.54540.74690.9453yesno
A7N5C3GCSH_VIBHBNo assigned EC number0.52450.74690.9603yesno
C5BM96GCSH_TERTTNo assigned EC number0.55380.79620.9923yesno
B7NHW5GCSH_ECO7INo assigned EC number0.51930.79010.9922yesno
Q7MEH8GCSH_VIBVYNo assigned EC number0.51630.74690.9603yesno
P25855GCSH1_ARATHNo assigned EC number0.73931.00.9818nono
Q666R6GCSH_YERPSNo assigned EC number0.52340.78390.9921yesno
B3DZN7GCSH_METI4No assigned EC number0.50420.73450.9296yesno
C6D8X0GCSH_PECCPNo assigned EC number0.52450.74690.9307yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query162
PRK01202127 PRK01202, PRK01202, glycine cleavage system protei 8e-72
COG0509131 COG0509, GcvH, Glycine cleavage system H protein ( 6e-60
pfam01597122 pfam01597, GCV_H, Glycine cleavage H-protein 2e-59
cd0684896 cd06848, GCS_H, Glycine cleavage H-protein 1e-50
TIGR00527128 TIGR00527, gcvH, glycine cleavage system H protein 1e-47
PRK13380144 PRK13380, PRK13380, glycine cleavage system protei 2e-43
PRK00624114 PRK00624, PRK00624, glycine cleavage system protei 4e-23
TIGR03077110 TIGR03077, not_gcvH, glycine cleavage protein H-li 2e-21
cd0666373 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_ 9e-18
>gnl|CDD|234918 PRK01202, PRK01202, glycine cleavage system protein H; Provisional Back     alignment and domain information 
 Score =  211 bits (540), Expect = 8e-72
 Identities = 75/126 (59%), Positives = 92/126 (73%)

Query: 32  SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91
            ++   LKY  SHEWV+ EG  ATVGITDHAQ+ LG++VFVELPE G  VK G  FGVVE
Sbjct: 2   MNIPADLKYTKSHEWVRVEGDTATVGITDHAQEQLGDIVFVELPEVGDEVKAGETFGVVE 61

Query: 92  SVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 151
           SVKA SD+ +P+SGEV+EVN  L ++P LVN  PY EGWL K+KPS  S+L+ L+D +AY
Sbjct: 62  SVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSDESELDDLLDAEAY 121

Query: 152 TKFCEE 157
               EE
Sbjct: 122 EALIEE 127

Length = 127
>gnl|CDD|223583 COG0509, GcvH, Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|201881 pfam01597, GCV_H, Glycine cleavage H-protein Back     alignment and domain information
>gnl|CDD|133457 cd06848, GCS_H, Glycine cleavage H-protein Back     alignment and domain information
>gnl|CDD|200024 TIGR00527, gcvH, glycine cleavage system H protein Back     alignment and domain information
>gnl|CDD|237370 PRK13380, PRK13380, glycine cleavage system protein H; Provisional Back     alignment and domain information
>gnl|CDD|167014 PRK00624, PRK00624, glycine cleavage system protein H; Provisional Back     alignment and domain information
>gnl|CDD|132121 TIGR03077, not_gcvH, glycine cleavage protein H-like protein, Chlamydial Back     alignment and domain information
>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 162
COG0509131 GcvH Glycine cleavage system H protein (lipoate-bi 100.0
PRK01202127 glycine cleavage system protein H; Provisional 100.0
TIGR00527127 gcvH glycine cleavage system H protein. The genome 100.0
PRK13380144 glycine cleavage system protein H; Provisional 100.0
KOG3373172 consensus Glycine cleavage system H protein (lipoa 100.0
PF01597122 GCV_H: Glycine cleavage H-protein; InterPro: IPR00 100.0
TIGR03077110 not_gcvH glycine cleavage protein H-like protein, 100.0
PRK00624114 glycine cleavage system protein H; Provisional 100.0
cd0684896 GCS_H Glycine cleavage H-protein. Glycine cleavage 100.0
cd0666373 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar 99.35
KOG3266172 consensus Predicted glycine cleavage system H prot 98.7
PRK0822570 acetyl-CoA carboxylase biotin carboxyl carrier pro 98.44
COG0511140 AccB Biotin carboxyl carrier protein [Lipid metabo 98.42
PRK0588971 putative acetyl-CoA carboxylase biotin carboxyl ca 98.35
PF0036474 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: 98.07
PRK0674883 hypothetical protein; Validated 98.05
cd0685067 biotinyl_domain The biotinyl-domain or biotin carb 97.91
PRK0705180 hypothetical protein; Validated 97.91
PRK06549130 acetyl-CoA carboxylase biotin carboxyl carrier pro 97.83
PRK14875 371 acetoin dehydrogenase E2 subunit dihydrolipoyllysi 97.81
PRK06302155 acetyl-CoA carboxylase biotin carboxyl carrier pro 97.78
TIGR00531156 BCCP acetyl-CoA carboxylase, biotin carboxyl carri 97.77
PLN02983274 biotin carboxyl carrier protein of acetyl-CoA carb 97.61
PRK05641153 putative acetyl-CoA carboxylase biotin carboxyl ca 97.61
PTZ00144 418 dihydrolipoamide succinyltransferase; Provisional 97.44
PLN02226 463 2-oxoglutarate dehydrogenase E2 component 97.41
PRK14042596 pyruvate carboxylase subunit B; Provisional 97.35
TIGR01108582 oadA oxaloacetate decarboxylase alpha subunit. Thi 97.31
PRK14040593 oxaloacetate decarboxylase; Provisional 97.28
COG0508 404 AceF Pyruvate/2-oxoglutarate dehydrogenase complex 97.22
COG4770645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 97.21
TIGR027121201 urea_carbox urea carboxylase. Members of this fami 97.12
TIGR012351143 pyruv_carbox pyruvate carboxylase. This enzyme pla 97.09
COG10381149 PycA Pyruvate carboxylase [Energy production and c 97.07
PRK09282592 pyruvate carboxylase subunit B; Validated 97.02
PRK05704 407 dihydrolipoamide succinyltransferase; Validated 97.01
PRK129991146 pyruvate carboxylase; Reviewed 96.97
TIGR01347 403 sucB 2-oxoglutarate dehydrogenase complex dihydrol 96.82
cd0684974 lipoyl_domain Lipoyl domain of the dihydrolipoyl a 96.74
PRK11854 633 aceF pyruvate dehydrogenase dihydrolipoyltransacet 96.65
TIGR02927 590 SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo 96.63
PF13375101 RnfC_N: RnfC Barrel sandwich hybrid domain 96.59
PRK11854 633 aceF pyruvate dehydrogenase dihydrolipoyltransacet 96.59
PF09891150 DUF2118: Uncharacterized protein conserved in arch 96.43
TIGR01348 546 PDHac_trf_long pyruvate dehydrogenase complex dihy 96.41
KOG0559 457 consensus Dihydrolipoamide succinyltransferase (2- 96.37
PRK11855 547 dihydrolipoamide acetyltransferase; Reviewed 96.3
PRK11855 547 dihydrolipoamide acetyltransferase; Reviewed 96.25
PLN02528 416 2-oxoisovalerate dehydrogenase E2 component 96.13
TIGR01348 546 PDHac_trf_long pyruvate dehydrogenase complex dihy 96.11
PRK11856 411 branched-chain alpha-keto acid dehydrogenase subun 96.02
TIGR01349 435 PDHac_trf_mito pyruvate dehydrogenase complex dihy 95.71
PLN02744 539 dihydrolipoyllysine-residue acetyltransferase comp 95.46
TIGR02927 590 SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo 95.09
TIGR01945 435 rnfC electron transport complex, RnfABCDGE type, C 95.01
PRK05352 448 Na(+)-translocating NADH-quinone reductase subunit 94.83
PRK11892 464 pyruvate dehydrogenase subunit beta; Provisional 94.8
PF05896 257 NQRA: Na(+)-translocating NADH-quinone reductase s 94.71
KOG03691176 consensus Pyruvate carboxylase [Energy production 94.51
KOG0557 470 consensus Dihydrolipoamide acetyltransferase [Ener 94.43
PRK05035 695 electron transport complex protein RnfC; Provision 94.42
PRK09783 409 copper/silver efflux system membrane fusion protei 94.09
TIGR01936 447 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo 93.78
KOG0558 474 consensus Dihydrolipoamide transacylase (alpha-ket 93.43
COG3608331 Predicted deacylase [General function prediction o 93.09
cd06251287 M14_ASTE_ASPA_like_1 A functionally uncharacterize 93.05
cd06253298 M14_ASTE_ASPA_like_3 A functionally uncharacterize 92.07
TIGR03309256 matur_yqeB selenium-dependent molybdenum hydroxyla 92.05
COG4656 529 RnfC Predicted NADH:ubiquinone oxidoreductase, sub 91.62
cd06255293 M14_ASTE_ASPA_like_5 A functionally uncharacterize 91.16
TIGR02994325 ectoine_eutE ectoine utilization protein EutE. Mem 90.72
cd06252316 M14_ASTE_ASPA_like_2 A functionally uncharacterize 90.33
TIGR01730 322 RND_mfp RND family efflux transporter, MFP subunit 90.23
PF1353350 Biotin_lipoyl_2: Biotin-lipoyl like 90.18
cd06254288 M14_ASTE_ASPA_like_4 A functionally uncharacterize 89.99
KOG0238670 consensus 3-Methylcrotonyl-CoA carboxylase, biotin 89.9
PRK09859 385 multidrug efflux system protein MdtE; Provisional 89.74
COG4072161 Uncharacterized protein conserved in archaea [Func 89.17
PRK09578 385 periplasmic multidrug efflux lipoprotein precursor 88.63
PRK11578 370 macrolide transporter subunit MacA; Provisional 88.58
COG1726 447 NqrA Na+-transporting NADH:ubiquinone oxidoreducta 87.74
PRK11556 415 multidrug efflux system subunit MdtA; Provisional 87.57
cd06250359 M14_PaAOTO_like An uncharacterized subgroup of the 85.05
KOG0368 2196 consensus Acetyl-CoA carboxylase [Lipid transport 81.38
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-47  Score=290.97  Aligned_cols=126  Identities=58%  Similarity=1.013  Sum_probs=121.9

Q ss_pred             cccCCcceeeCCceEEEEeC-CEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEee
Q 031294           32 SSVLDGLKYASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEV  110 (162)
Q Consensus        32 ~~~p~~~~Ys~~H~Wv~~e~-~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~v  110 (162)
                      +.+|++++|+.+|+||+.++ ++++||||+|||++||+|+||+||++|+++++|+++++|||.|++++++||++|+|++|
T Consensus         3 ~~~p~~l~Y~~~heWvr~e~d~~~tvGiT~~aq~~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvev   82 (131)
T COG0509           3 CNIPDDLKYTAEHEWVRVEGDGTATVGITDYAQDQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEV   82 (131)
T ss_pred             ccccccceeccceEEEEecCCCEEEEeCCHHHHHhcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEe
Confidence            57899999999999999986 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCcCCCCCCCCcEEEEEeCCh-hhhhcCCCHHHHHHHHHH
Q 031294          111 NTKLTETPGLVNSSPYEEGWLIKVKPSSP-SDLESLMDPQAYTKFCEE  157 (162)
Q Consensus       111 N~~l~~~P~lln~dpy~~GWl~~i~~~~~-~~~~~Lm~~~~Y~~~~~~  157 (162)
                      |++|.++|++||+||||+|||++|+++++ ++++.||++++|.+++++
T Consensus        83 N~~l~~~PeliN~dPyg~gWi~klk~~d~~~~~~~L~~~~~y~~~~~~  130 (131)
T COG0509          83 NEALVDSPELINSDPYGEGWIVKLKPADPSEELEALLDAEAYAELLKE  130 (131)
T ss_pred             chhhhcChhhhccCCCCCceEEEEeeCChHHHHHhccCHHHHHHHhhc
Confidence            99999999999999999999999999997 559999999999999864

>PRK01202 glycine cleavage system protein H; Provisional Back     alignment and domain information
>TIGR00527 gcvH glycine cleavage system H protein Back     alignment and domain information
>PRK13380 glycine cleavage system protein H; Provisional Back     alignment and domain information
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] Back     alignment and domain information
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial Back     alignment and domain information
>PRK00624 glycine cleavage system protein H; Provisional Back     alignment and domain information
>cd06848 GCS_H Glycine cleavage H-protein Back     alignment and domain information
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) Back     alignment and domain information
>KOG3266 consensus Predicted glycine cleavage system H protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] Back     alignment and domain information
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional Back     alignment and domain information
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid Back     alignment and domain information
>PRK06748 hypothetical protein; Validated Back     alignment and domain information
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase Back     alignment and domain information
>PRK07051 hypothetical protein; Validated Back     alignment and domain information
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional Back     alignment and domain information
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein Back     alignment and domain information
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>PLN02226 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PRK09282 pyruvate carboxylase subunit B; Validated Back     alignment and domain information
>PRK05704 dihydrolipoamide succinyltransferase; Validated Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) Back     alignment and domain information
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases Back     alignment and domain information
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain Back     alignment and domain information
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function Back     alignment and domain information
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion] Back     alignment and domain information
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>PLN02528 2-oxoisovalerate dehydrogenase E2 component Back     alignment and domain information
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed Back     alignment and domain information
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex Back     alignment and domain information
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit Back     alignment and domain information
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins Back     alignment and domain information
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion] Back     alignment and domain information
>PRK05035 electron transport complex protein RnfC; Provisional Back     alignment and domain information
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional Back     alignment and domain information
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit Back     alignment and domain information
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion] Back     alignment and domain information
>COG3608 Predicted deacylase [General function prediction only] Back     alignment and domain information
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family Back     alignment and domain information
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion] Back     alignment and domain information
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>TIGR02994 ectoine_eutE ectoine utilization protein EutE Back     alignment and domain information
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit Back     alignment and domain information
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like Back     alignment and domain information
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>PRK09859 multidrug efflux system protein MdtE; Provisional Back     alignment and domain information
>COG4072 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed Back     alignment and domain information
>PRK11578 macrolide transporter subunit MacA; Provisional Back     alignment and domain information
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion] Back     alignment and domain information
>PRK11556 multidrug efflux system subunit MdtA; Provisional Back     alignment and domain information
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases Back     alignment and domain information
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query162
1hpc_A131 Refined Structures At 2 Angstroms And 2.2 Angstroms 1e-58
2ka7_A124 Nmr Solution Structure Of Tm0212 At 40 C Length = 1 2e-33
3a7a_B128 Crystal Structure Of E. Coli Lipoate-protein Ligase 3e-32
1zko_A136 Crystal Structure Of Glycine Cleavage System H Prot 3e-32
3a8i_E129 Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Len 1e-31
1onl_A128 Crystal Structure Of Thermus Thermophilus Hb8 H-Pro 2e-31
2edg_A130 Solution Structure Of The Gcv_h Domain From Mouse G 3e-31
3klr_A125 Bovine H-Protein At 0.88 Angstrom Resolution Length 8e-31
3mxu_A143 Crystal Structure Of Glycine Cleavage System Protei 3e-28
3ift_A142 Crystal Structure Of Glycine Cleavage System Protei 1e-25
3hgb_A155 Crystal Structure Of Glycine Cleavage System Protei 1e-25
3tzu_A137 Crystal Structure Of A Glycine Cleavage System H Pr 9e-18
>pdb|1HPC|A Chain A, Refined Structures At 2 Angstroms And 2.2 Angstroms Of The Two Forms Of The H-Protein, A Lipoamide-Containing Protein Of The Glycine Decarboxylase Length = 131 Back     alignment and structure 
Iteration: 1

 Score =  221 bits (564), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/131 (80%), Positives = 118/131 (90%)
Query: 32  SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91
           S+VLDGLKYA SHEWVKHEGSVAT+GITDHAQDHLGEVVFVELPE G SV +G GFG VE
Sbjct: 1   SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVE 60
Query: 92  SVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 151
           SVKATSDVNSPISGEVIEVNT LT  PGL+NSSPYE+GW+IK+KP+SP +LESL+  + Y
Sbjct: 61  SVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEY 120
Query: 152 TKFCEEENAAH 162
           TKFCEEE+AAH
Sbjct: 121 TKFCEEEDAAH 131
>pdb|2KA7|A Chain A, Nmr Solution Structure Of Tm0212 At 40 C Length = 124 Back     alignment and structure
>pdb|3A7A|B Chain B, Crystal Structure Of E. Coli Lipoate-protein Ligase A In Complex With Octyl-amp And Apoh-protein Length = 128 Back     alignment and structure
>pdb|1ZKO|A Chain A, Crystal Structure Of Glycine Cleavage System H Protein (Tm0212) From Thermotoga Maritima At 1.65 A Resolution Length = 136 Back     alignment and structure
>pdb|3A8I|E Chain E, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Length = 129 Back     alignment and structure
>pdb|1ONL|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 H-Protein Of The Glycine Cleavage System Length = 128 Back     alignment and structure
>pdb|2EDG|A Chain A, Solution Structure Of The Gcv_h Domain From Mouse Glycine Length = 130 Back     alignment and structure
>pdb|3KLR|A Chain A, Bovine H-Protein At 0.88 Angstrom Resolution Length = 125 Back     alignment and structure
>pdb|3MXU|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H From Henselae Length = 143 Back     alignment and structure
>pdb|3IFT|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H From Mycobacterium Tuberculosis, Using X-Rays From The Compact L Source Length = 142 Back     alignment and structure
>pdb|3HGB|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H From Mycobacterium Tuberculosis Length = 155 Back     alignment and structure
>pdb|3TZU|A Chain A, Crystal Structure Of A Glycine Cleavage System H Protein (Gcvh) From Mycobacterium Marinum Length = 137 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query162
1hpc_A131 H protein of the glycine cleavage system; transit 2e-76
1zko_A136 Glycine cleavage system H protein; TM0212, structu 1e-73
1onl_A128 Glycine cleavage system H protein; hybrid barrel-s 6e-73
3klr_A125 Glycine cleavage system H protein; antiparallel be 6e-72
3a7l_A128 H-protein, glycine cleavage system H protein; lipo 2e-71
3mxu_A143 Glycine cleavage system H protein; seattle structu 1e-69
3hgb_A155 Glycine cleavage system H protein; ssgcid, niaid, 6e-68
3tzu_A137 GCVH, glycine cleavage system H protein 1; ssgcid, 2e-63
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* Length = 131 Back     alignment and structure
 Score =  223 bits (570), Expect = 2e-76
 Identities = 106/131 (80%), Positives = 118/131 (90%)

Query: 32  SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91
           S+VLDGLKYA SHEWVKHEGSVAT+GITDHAQDHLGEVVFVELPE G SV +G GFG VE
Sbjct: 1   SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVE 60

Query: 92  SVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 151
           SVKATSDVNSPISGEVIEVNT LT  PGL+NSSPYE+GW+IK+KP+SP +LESL+  + Y
Sbjct: 61  SVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEY 120

Query: 152 TKFCEEENAAH 162
           TKFCEEE+AAH
Sbjct: 121 TKFCEEEDAAH 131
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A Length = 136 Back     alignment and structure
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1 Length = 128 Back     alignment and structure
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} PDB: 2edg_A Length = 125 Back     alignment and structure
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E* Length = 128 Back     alignment and structure
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae} Length = 143 Back     alignment and structure
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A Length = 155 Back     alignment and structure
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum} Length = 137 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query162
3klr_A125 Glycine cleavage system H protein; antiparallel be 100.0
3hgb_A155 Glycine cleavage system H protein; ssgcid, niaid, 100.0
3mxu_A143 Glycine cleavage system H protein; seattle structu 100.0
1hpc_A131 H protein of the glycine cleavage system; transit 100.0
3tzu_A137 GCVH, glycine cleavage system H protein 1; ssgcid, 100.0
1onl_A128 Glycine cleavage system H protein; hybrid barrel-s 100.0
3a7l_A128 H-protein, glycine cleavage system H protein; lipo 100.0
1zko_A136 Glycine cleavage system H protein; TM0212, structu 100.0
1gjx_A81 Pyruvate dehydrogenase; oxidoreductase, lipoyl dom 98.54
2kcc_A84 Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, 98.27
1bdo_A80 Acetyl-COA carboxylase; BCCPSC, carboxyl transfera 98.22
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 98.17
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 98.16
1z6h_A72 Biotin/lipoyl attachment protein; solution structu 98.15
1qjo_A80 Dihydrolipoamide acetyltransferase; lipoyl domain, 98.15
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 98.1
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 98.08
1dcz_A77 Transcarboxylase 1.3S subunit; antiparallel beta s 98.07
1iyu_A79 E2P, dihydrolipoamide acetyltransferase component 98.06
2d5d_A74 Methylmalonyl-COA decarboxylase gamma chain; bioti 98.03
2dnc_A98 Pyruvate dehydrogenase protein X component; lipoic 97.99
2dne_A108 Dihydrolipoyllysine-residue acetyltransferase comp 97.89
1y8o_B128 Dihydrolipoyllysine-residue acetyltransferase COM 97.88
2jku_A94 Propionyl-COA carboxylase alpha chain, mitochondri 97.88
2k7v_A85 Dihydrolipoyllysine-residue acetyltransferase comp 97.84
2ejm_A99 Methylcrotonoyl-COA carboxylase subunit alpha; bio 97.83
2dn8_A100 Acetyl-COA carboxylase 2; biotin required enzyme, 97.77
1pmr_A80 Dihydrolipoyl succinyltransferase; 2-oxoglutarate 97.73
3n6r_A681 Propionyl-COA carboxylase, alpha subunit; protein 97.63
3u9t_A675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 97.49
3va7_A1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 97.22
2k32_A116 A; NMR {Campylobacter jejuni} PDB: 2k33_A* 97.2
3hbl_A1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 97.12
1zy8_K 229 Pyruvate dehydrogenase protein X component, mitoch 96.92
3dva_I 428 Dihydrolipoyllysine-residue acetyltransferase comp 96.89
3bg3_A718 Pyruvate carboxylase, mitochondrial; TIM barrel, A 96.44
2qf7_A1165 Pyruvate carboxylase protein; multi-domain, multi- 96.31
3d4r_A169 Domain of unknown function from the PFAM-B_34464; 96.17
3na6_A331 Succinylglutamate desuccinylase/aspartoacylase; st 94.71
3ne5_B 413 Cation efflux system protein CUSB; transmembrane h 94.56
3fmc_A368 Putative succinylglutamate desuccinylase / aspart; 94.32
3cdx_A354 Succinylglutamatedesuccinylase/aspartoacylase; str 93.98
3fpp_A 341 Macrolide-specific efflux protein MACA; hexameric 93.91
2f1m_A 277 Acriflavine resistance protein A; helical hairpin, 93.75
3lnn_A 359 Membrane fusion protein (MFP) heavy metal cation Z 93.45
1vf7_A 369 Multidrug resistance protein MEXA; alpha hairpin, 92.06
2qj8_A332 MLR6093 protein; structural genomics, joint center 91.1
4dk0_A 369 Putative MACA; alpha-hairpin, lipoyl, beta-barrel, 89.85
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A Back     alignment and structure
Probab=100.00  E-value=2.3e-48  Score=293.51  Aligned_cols=123  Identities=50%  Similarity=0.857  Sum_probs=120.5

Q ss_pred             cceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeecccccc
Q 031294           37 GLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE  116 (162)
Q Consensus        37 ~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN~~l~~  116 (162)
                      +++||++|+||+.+|+.++||||+|||++||+|+||+||++|++|++|++|++|||.|++++|+||++|+|++||.+|.+
T Consensus         2 ~l~Yt~~HeWv~~e~~~~~vGITd~Aq~~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~   81 (125)
T 3klr_A            2 VRKFTEKHEWVTTENGVGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE   81 (125)
T ss_dssp             CCEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred             CcEeCCCCEEEEEcCCEEEEeeCHHHHhhCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHHHhh
Q 031294          117 TPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN  159 (162)
Q Consensus       117 ~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~~e~  159 (162)
                      +|++||+|||++|||++|++++++++++||++++|+++|++.+
T Consensus        82 ~P~liN~dpy~~gWl~ki~~~~~~e~~~Ll~~~~Y~~~~~~~~  124 (125)
T 3klr_A           82 NPGLVNKSCYEDGWLIKMTFSNPSELDELMSEEAYEKYIKSIE  124 (125)
T ss_dssp             CTTHHHHCTTTTTCCEEEEESCGGGGGGSBCHHHHHHHHHHHH
T ss_pred             ChHhhcCCCCCCceEEEEEECCHHHHHhcCCHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999998764
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A Back     alignment and structure
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae} Back     alignment and structure
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* Back     alignment and structure
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum} Back     alignment and structure
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1 Back     alignment and structure
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E* Back     alignment and structure
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A Back     alignment and structure
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Back     alignment and structure
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Back     alignment and structure
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Back     alignment and structure
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Back     alignment and structure
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Back     alignment and structure
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Back     alignment and structure
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Back     alignment and structure
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Back     alignment and structure
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Back     alignment and structure
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Back     alignment and structure
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Back     alignment and structure
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Back     alignment and structure
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Back     alignment and structure
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis} Back     alignment and structure
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP} Back     alignment and structure
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B Back     alignment and structure
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A* Back     alignment and structure
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} Back     alignment and structure
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} Back     alignment and structure
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli} Back     alignment and structure
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans} Back     alignment and structure
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A Back     alignment and structure
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti} Back     alignment and structure
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 162
d1hpca_131 b.84.1.1 (A:) Protein H of glycine cleavage system 5e-56
d1onla_127 b.84.1.1 (A:) Protein H of glycine cleavage system 3e-54
>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]} Length = 131 Back     information, alignment and structure

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

 Score =  170 bits (431), Expect = 5e-56
 Identities = 106/131 (80%), Positives = 118/131 (90%)

Query: 32  SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91
           S+VLDGLKYA SHEWVKHEGSVAT+GITDHAQDHLGEVVFVELPE G SV +G GFG VE
Sbjct: 1   SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVE 60

Query: 92  SVKATSDVNSPISGEVIEVNTKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAY 151
           SVKATSDVNSPISGEVIEVNT LT  PGL+NSSPYE+GW+IK+KP+SP +LESL+  + Y
Sbjct: 61  SVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEY 120

Query: 152 TKFCEEENAAH 162
           TKFCEEE+AAH
Sbjct: 121 TKFCEEEDAAH 131
>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]} Length = 127 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query162
d1hpca_131 Protein H of glycine cleavage system {Pea (Pisum s 100.0
d1onla_127 Protein H of glycine cleavage system {Thermus ther 100.0
d1dcza_77 Biotin carboxyl carrier domain of transcarboxylase 98.41
d1bdoa_80 Biotinyl domain of acetyl-CoA carboxylase {Escheri 98.31
d1iyua_79 Lipoyl domain of dihydrolipoamide acetyltransferas 98.14
d1k8ma_87 Lipoyl domain of the mitochondrial branched-chain 98.14
d1ghja_79 Lipoyl domain of the 2-oxoglutarate dehydrogenase 98.12
d1laba_80 Lipoyl domain of dihydrolipoamide acetyltransferas 98.11
d1qjoa_80 Lipoyl domain of dihydrolipoamide acetyltransferas 98.07
d1gjxa_81 Lipoyl domain of dihydrolipoamide acetyltransferas 97.94
d1y8ob1102 Lipoyl domain of dihydrolipoamide acetyltransferas 97.91
d1pmra_80 Lipoyl domain of the 2-oxoglutarate dehydrogenase 97.74
>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=1.4e-48  Score=294.82  Aligned_cols=131  Identities=81%  Similarity=1.277  Sum_probs=128.6

Q ss_pred             cccCCcceeeCCceEEEEeCCEEEEeechhhhhhcCCeeEEEcCCCCceeecCCeEEEEEEecccceeecccceEEEeec
Q 031294           32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN  111 (162)
Q Consensus        32 ~~~p~~~~Ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~~G~~v~~g~~l~~IEs~K~v~~i~sPvsG~Vv~vN  111 (162)
                      +++|++++|+++|+|++.+|+.++||||+|||++||+|+||+||++|+.+++|++|++||+.|++.+|+||++|+|+++|
T Consensus         1 ~~v~~~~~Yt~~H~Wv~~e~~~~~vGit~~a~~~lG~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN   80 (131)
T d1hpca_           1 SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN   80 (131)
T ss_dssp             CCCCTTCEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC
T ss_pred             CCCcCcceeCCCeEEEEecCCEEEEEECHHHHhhhhhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeeh
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcCCCCCCCCcEEEEEeCChhhhhcCCCHHHHHHHHHHhhccC
Q 031294          112 TKLTETPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH  162 (162)
Q Consensus       112 ~~l~~~P~lln~dpy~~GWl~~i~~~~~~~~~~Lm~~~~Y~~~~~~e~~~~  162 (162)
                      .+|.++|++||++||++|||++|++++++++++||++++|.+++++++++|
T Consensus        81 ~~l~~~P~llN~dpy~~gWl~~i~~~d~~~~~~Ll~~~~Y~~~~~e~~~~~  131 (131)
T d1hpca_          81 TGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH  131 (131)
T ss_dssp             THHHHCTTHHHHCTTTTTCCEEEEESSGGGGGGSBCHHHHHHHHHHHHHCC
T ss_pred             hhhhhCHHHHhCCCCCCcEEEEEEECCHHHHHhCCCHHHHHHHHhhhhccC
Confidence            999999999999999999999999999999999999999999999999887
>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Back     information, alignment and structure