Citrus Sinensis ID: 031298

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MVVVEQSHMENSHLQSRFSASHSSLNMGIDPHAQAHAVSEFQLYSGGASGTSGSDKAKQSGKKGDHKGTKKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQILLKACTTS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEcccccccccccEEcccccccEEEEcEEcccccccccccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHcccEEEccccccccEEEcccccccccEEEEEccccccEEEEEEcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MVVVEqshmenshlqsrfsashsslnmgidphaqahavsefqlysggasgtsgsdkakqsgkkgdhkgtkkhryAFQTRSQVDILDDGYRWRKYGqkvvknskfprsyykcthkgcnvkkqvqrntkdeEIVVTTYeglhthpigkiTDSFEQILLKACTTS
Flexible Loop (DISEMBL)
MVVVEqshmenshLQSRFSASHSSLNMGIDPHAQAHAVSEFQLYSGGASgtsgsdkakqsgkkgdhkgtkkhryafqtrsqvdilddgyRWRKYgqkvvknskfprsyykcthkgcnvkkqvqrntkdeEIVVTTyeglhthpigkitDSFEQILLKACTTS
Low Complexity Region (SEG)
MVVVEQSHMENSHLQSRFSASHSSLNMGIDPHAQAHAVSEFQLYSGGASGTSGSDKAKQSgkkgdhkgtkkhRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQILLKACTTS
Disordered region (IsUnstruct)
*************************************************************************YAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQILLKAC***
Disordered Region (DISOPRED)
*V*************************************************************************FQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHT*********************
Disordered Region (DISEMBL)
**********************SSLNMGIDPHAQAHAVSEFQLYSG*************************HRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQILLKACTTS
Disordered Region (DISPRO)
*********************************************************************KKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLH**********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVVEQSHMENSHLQSRFSASHSSLNMGIDPHAQAHAVSEFQLYSGGASGTSGSDKAKQSGKKGDHKGTKKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQILLKACTTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q9FYA2	145	Probable WRKY transcripti	yes	no	0.512	0.572	0.807	3e-36
Q9S763	147	Probable WRKY transcripti	no	no	0.512	0.564	0.746	3e-32
Q8VWQ4	195	Probable WRKY transcripti	no	no	0.512	0.425	0.638	1e-27
Q9FFS3	179	Probable WRKY transcripti	no	no	0.629	0.569	0.553	1e-27
Q8GY11	109	Probable WRKY transcripti	no	no	0.549	0.816	0.595	7e-27
Q9FGZ4	399	Probable WRKY transcripti	no	no	0.462	0.187	0.653	1e-26
O22900	337	Probable WRKY transcripti	no	no	0.567	0.272	0.591	2e-26
Q8VWJ2	318	Probable WRKY transcripti	no	no	0.512	0.261	0.602	1e-25
Q9C983	287	Probable WRKY transcripti	no	no	0.5	0.282	0.617	1e-25
Q93WV4	282	Probable WRKY transcripti	no	no	0.444	0.255	0.666	3e-25

>sp|Q9FYA2|WRK75_ARATH Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1

 Score =  150 bits (379), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/83 (80%), Positives = 76/83 (91%)

Query: 73  RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
           RYAFQTRSQVDILDDGYRWRKYGQK VKN+KFPRSYY+CT+ GCNVKKQVQR T D+E+V
Sbjct: 54  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVV 113

Query: 133 VTTYEGLHTHPIGKITDSFEQIL 155
           VTTYEG+H+HPI K T++FE IL
Sbjct: 114 VTTYEGVHSHPIEKSTENFEHIL 136

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9S763|WRK45_ARATH Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1

 Score =  137 bits (345), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 70/83 (84%)

Query: 73  RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
           RYAFQTRSQVDILDDGYRWRKYGQK VKN+ FPRSYYKCT +GC VKKQVQR   DE +V
Sbjct: 52  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVV 111

Query: 133 VTTYEGLHTHPIGKITDSFEQIL 155
           VTTY+G+HTH + K +D+F  IL
Sbjct: 112 VTTYQGVHTHAVDKPSDNFHHIL 134

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWQ4|WRK56_ARATH Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 63/83 (75%)

Query: 73  RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
           R AF TRS  D+LDDGYRWRKYGQK VKN+  PRSYY+CT+  CNVKKQVQR  KD  +V
Sbjct: 101 RIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVV 160

Query: 133 VTTYEGLHTHPIGKITDSFEQIL 155
           VTTYEG+H HP  K+ ++   +L
Sbjct: 161 VTTYEGVHNHPCEKLMETLSPLL 183

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS3|WRK24_ARATH Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 74/103 (71%), Gaps = 1/103 (0%)

Query: 54  SDKAKQSGKKGDHKGTKK-HRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCT 112
           +D+  + GK+   K ++K  R AF TRS  D+LDDGYRWRKYGQK VK++  PRSYY+CT
Sbjct: 65  NDQIGEKGKELKEKRSRKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCT 124

Query: 113 HKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQIL 155
           +  CNVKKQVQR  KD  +VVTTYEG+H HP  K+ ++   +L
Sbjct: 125 YHTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLNPLL 167

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY11|WRK43_ARATH Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1

 Score =  119 bits (299), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%)

Query: 67  KGTKKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNT 126
           K  K  R++F+T+S  DILDDGYRWRKYGQK VKNS +PRSYY+CT   CNVKKQVQR +
Sbjct: 11  KKMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQRLS 70

Query: 127 KDEEIVVTTYEGLHTHPIGKITDSFEQIL 155
           K+  IV TTYEG+H HP  ++  +   +L
Sbjct: 71  KETSIVETTYEGIHNHPCEELMQTLTPLL 99

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGZ4|WRK48_ARATH Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 61/75 (81%)

Query: 70  KKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDE 129
           ++ R+AF T+S +D LDDGYRWRKYGQK VKNS +PRSYY+CT  GC VKK+V+R++ D 
Sbjct: 205 REARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDP 264

Query: 130 EIVVTTYEGLHTHPI 144
            IV+TTYEG HTHP 
Sbjct: 265 SIVMTTYEGQHTHPF 279

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22900|WRK23_ARATH Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 68/93 (73%), Gaps = 1/93 (1%)

Query: 56  KAKQSGKKGDHKGTKKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKG 115
           K +   KK + K  ++ R AF T+S+VD L+DGYRWRKYGQK VKNS FPRSYY+CT   
Sbjct: 144 KKQLKAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTAS 203

Query: 116 CNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKIT 148
           CNVKK+V+R+ +D   VVTTYEG HTH I  +T
Sbjct: 204 CNVKKRVERSFRDPSTVVTTYEGQHTH-ISPLT 235

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 66/83 (79%)

Query: 62  KKGDHKGTKKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQ 121
           KK + K  ++ R +F T+S+VD L+DGYRWRKYGQK VKNS +PRSYY+CT + CNVKK+
Sbjct: 148 KKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKR 207

Query: 122 VQRNTKDEEIVVTTYEGLHTHPI 144
           V+R+ +D  +V+TTYEG H HPI
Sbjct: 208 VERSFQDPTVVITTYEGQHNHPI 230

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C983|WRK57_ARATH Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 62/81 (76%)

Query: 62  KKGDHKGTKKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQ 121
           KK   K  ++ R+AF T+S VD L+DGYRWRKYGQK VKNS FPRSYY+CT+  C VKK+
Sbjct: 123 KKKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKR 182

Query: 122 VQRNTKDEEIVVTTYEGLHTH 142
           V+R++ D  IV+TTYEG H H
Sbjct: 183 VERSSDDPSIVITTYEGQHCH 203

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV4|WRK71_ARATH Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1

 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 60/72 (83%)

Query: 73  RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
           R AF T+S++D L+DGYRWRKYGQK VKNS +PRSYY+CT + CNVKK+V+R+ +D  IV
Sbjct: 123 RVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIV 182

Query: 133 VTTYEGLHTHPI 144
           +TTYEG H HPI
Sbjct: 183 ITTYEGKHNHPI 194

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
224122078	186	predicted protein [Populus trichocarpa]	0.648	0.564	0.742	5e-40
302399123	139	WRKY domain class transcription factor [	0.641	0.748	0.75	1e-39
225456341	151	PREDICTED: probable WRKY transcription f	0.839	0.900	0.584	2e-39
383288273	166	WRKY transcription factor [Gossypium bar	0.876	0.855	0.543	8e-39
198449163	190	WRKY DNA binding protein [Fragaria x ana	0.654	0.557	0.716	2e-38
356561712	195	PREDICTED: probable WRKY transcription f	0.672	0.558	0.707	3e-38
355320024	145	WRKY transcription factor [Humulus lupul	0.648	0.724	0.719	7e-38
58200407	170	WRKY transcription factor-b [Capsicum an	0.512	0.488	0.843	2e-37
413920815	229	putative WRKY DNA-binding domain superfa	0.635	0.449	0.699	2e-37
24745606	172	WRKY-type DNA binding protein [Solanum t	0.512	0.482	0.843	2e-37

>gi|224122078|ref|XP_002318747.1| predicted protein [Populus trichocarpa] gi|222859420|gb|EEE96967.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/105 (74%), Positives = 88/105 (83%)

Query: 56  KAKQSGKKGDHKGTKKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKG 115
           K K   + GD+   +KH+YAFQTRSQVDILDDGYRWRKYGQK VKNSKFPRSYY+CT+ G
Sbjct: 70  KVKPGVRGGDNNEFRKHKYAFQTRSQVDILDDGYRWRKYGQKTVKNSKFPRSYYRCTNNG 129

Query: 116 CNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQILLKACT 160
           CNVKKQVQRN+KDEEIVVTTYEG+HTHPI K TD+ E IL +  T
Sbjct: 130 CNVKKQVQRNSKDEEIVVTTYEGMHTHPIEKCTDNIEDILRQMQT 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399123|gb|ADL36856.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 86/104 (82%)

Query: 52  SGSDKAKQSGKKGDHKGTKKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKC 111
           SG    +   KKGD K  +K RYAFQTRSQVDILDDGYRWRKYGQK VKN+KFPRSYY+C
Sbjct: 27  SGEATVRLGMKKGDQKKIRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRC 86

Query: 112 THKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQIL 155
           TH GCNVKKQVQR TKDE +VVTTYEG+H+HPI K TD+FE IL
Sbjct: 87  THHGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIEKSTDNFEHIL 130

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456341|ref|XP_002283872.1| PREDICTED: probable WRKY transcription factor 75 [Vitis vinifera] gi|50953502|gb|AAT90397.1| WRKY-type DNA binding protein 1 [Vitis vinifera] gi|297734430|emb|CBI15677.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/142 (58%), Positives = 103/142 (72%), Gaps = 6/142 (4%)

Query: 15  QSRFSASHSSLNMGIDPH-AQAHAVSEFQLYSGGASGTSGSDKAKQSGKKGDHKGTKKHR 73
           Q  F  S  S      P+ A  HA++ ++     ++G   S+  ++ GKK   K  +KHR
Sbjct: 5   QILFPGSSKSPANPFPPNMANFHAMNIYK-----SAGFDASETKEKPGKKEGQKKIRKHR 59

Query: 74  YAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVV 133
           +AFQTRS VDILDDGYRWRKYGQK VKN+KFPRSYY+CT+K CNVKKQVQR +KDEEIVV
Sbjct: 60  FAFQTRSHVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYKDCNVKKQVQRLSKDEEIVV 119

Query: 134 TTYEGLHTHPIGKITDSFEQIL 155
           TTYEG+HTHP+ K T++FE IL
Sbjct: 120 TTYEGIHTHPVEKPTENFEHIL 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383288273|gb|AFH02532.1| WRKY transcription factor [Gossypium barbadense]

 Score =  165 bits (417), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 88/162 (54%), Positives = 105/162 (64%), Gaps = 20/162 (12%)

Query: 9   MENSHLQSRFSASHS---SLNMGIDPHAQAHAVSEFQLYSG----GASGTSGSDKAKQSG 61
           MEN  +    SA  +   SL + + P++QA     F  + G    G  G   ++   Q  
Sbjct: 1   MENYQMFFPISAPSTAAQSLPLNMAPNSQA-----FNSFHGNSVDGFLGLKSTEDLIQKP 55

Query: 62  KKGD--------HKGTKKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTH 113
           +  D         K  +K RYAFQTRSQVDILDDGYRWRKYGQK VKN+KFPRSYY+CTH
Sbjct: 56  EAKDFMKSSQKMEKKIRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTH 115

Query: 114 KGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQIL 155
           +GC VKKQVQR TKDE +VVTTYEG+HTHPI K TD+FE IL
Sbjct: 116 EGCKVKKQVQRLTKDESVVVTTYEGMHTHPIQKPTDNFEHIL 157

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|198449163|gb|ACH88751.1| WRKY DNA binding protein [Fragaria x ananassa]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 87/106 (82%)

Query: 50  GTSGSDKAKQSGKKGDHKGTKKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYY 109
           G   S+ A + G K   K  +K RYAFQTRSQVDILDDGYRWRKYGQK VKN+KFPRSYY
Sbjct: 76  GEGESNTAVRLGMKKGDKKIRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYY 135

Query: 110 KCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQIL 155
           +CTH+GCNVKKQVQR T+DE +VVTTYEG+H+HPI K TD+FE IL
Sbjct: 136 RCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHSHPIEKSTDNFEHIL 181

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561712|ref|XP_003549123.1| PREDICTED: probable WRKY transcription factor 56-like [Glycine max]

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/113 (70%), Positives = 90/113 (79%), Gaps = 4/113 (3%)

Query: 47  GASGTSGSDKAKQSGKKGDHKGTKKH----RYAFQTRSQVDILDDGYRWRKYGQKVVKNS 102
           G S T+ SD+   SG   + K  +K     RYAFQTRSQVDILDDGYRWRKYGQK VKN+
Sbjct: 74  GGSNTNVSDELGGSGNSNNKKKGEKKVKKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNN 133

Query: 103 KFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQIL 155
           KFPRSYY+CTH+GCNVKKQVQR TKDE +VVTTYEG+HTHPI K TD+FE IL
Sbjct: 134 KFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHIL 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355320024|emb|CBY88801.1| WRKY transcription factor [Humulus lupulus]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 77/107 (71%), Positives = 89/107 (83%), Gaps = 2/107 (1%)

Query: 58  KQSGKKGDHKGTKKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCN 117
           K+ G   ++K  +K RYAFQTRSQVDILDDGYRWRKYGQK VKN+KFPRSYY+CTH+GCN
Sbjct: 38  KRKGDNSNNKKARKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCN 97

Query: 118 VKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQIL--LKACTTS 162
           VKKQVQR TKDE IVVTTYEG+H+H I K TD+FE IL  ++  TTS
Sbjct: 98  VKKQVQRLTKDEGIVVTTYEGMHSHTIDKSTDNFEHILSQMQIYTTS 144

Source: Humulus lupulus

Species: Humulus lupulus

Genus: Humulus

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58200407|gb|AAW66459.1| WRKY transcription factor-b [Capsicum annuum]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 78/83 (93%)

Query: 73  RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
           RYAFQTRSQVDILDDGYRWRKYGQK VKN+KFPRSYY+CTH+GCNVKKQVQR +KDE +V
Sbjct: 79  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSKDEGVV 138

Query: 133 VTTYEGLHTHPIGKITDSFEQIL 155
           VTTYEG+H+HPI K TD+FEQIL
Sbjct: 139 VTTYEGMHSHPIDKSTDNFEQIL 161

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413920815|gb|AFW60747.1| putative WRKY DNA-binding domain superfamily protein [Zea mays]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 85/103 (82%)

Query: 55  DKAKQSGKKGDHKGTKKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHK 114
           D   Q+GK+   K  ++ R+AFQTRSQVDILDDGYRWRKYGQK VKN+KFPRSYY+CTH+
Sbjct: 107 DGRLQAGKRKGEKKERRPRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQ 166

Query: 115 GCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQILLK 157
           GCNVKKQVQR ++DE +VVTTYEG HTHPI K  D+FE IL +
Sbjct: 167 GCNVKKQVQRLSRDEGVVVTTYEGTHTHPIEKSNDNFEHILTQ 209

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24745606|dbj|BAC23031.1| WRKY-type DNA binding protein [Solanum tuberosum]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 78/83 (93%)

Query: 73  RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
           RYAFQTRSQVDILDDGYRWRKYGQK VKN+KFPRSYY+CTH+GCNVKKQVQR +KDEE+V
Sbjct: 81  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSKDEEVV 140

Query: 133 VTTYEGLHTHPIGKITDSFEQIL 155
           VTTYEG+H+HPI K TD+FE IL
Sbjct: 141 VTTYEGMHSHPIDKSTDNFEHIL 163

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2179862	145	WRKY75 "WRKY DNA-binding prote	0.512	0.572	0.807	1.7e-34
TAIR|locus:2078703	147	WRKY45 "WRKY DNA-binding prote	0.709	0.782	0.576	6e-32
TAIR|locus:2024583	195	WRKY56 "WRKY DNA-binding prote	0.679	0.564	0.517	4.5e-27
TAIR|locus:2160512	179	WRKY24 "WRKY DNA-binding prote	0.512	0.463	0.626	6.6e-26
TAIR|locus:2062949	109	WRKY43 "WRKY DNA-binding prote	0.512	0.761	0.614	1.4e-25
TAIR|locus:2157829	399	WRKY48 "WRKY DNA-binding prote	0.438	0.177	0.690	5.9e-25
TAIR|locus:2019382	282	WRKY71 "WRKY DNA-binding prote	0.802	0.460	0.459	9.7e-25
TAIR|locus:505006317	218	WRKY12 "WRKY DNA-binding prote	0.432	0.321	0.671	2.6e-24
TAIR|locus:2065124	337	WRKY23 "WRKY DNA-binding prote	0.462	0.222	0.671	3.3e-24
TAIR|locus:2141872	318	WRKY28 "WRKY DNA-binding prote	0.444	0.226	0.652	3.3e-24

TAIR|locus:2179862 WRKY75 "WRKY DNA-binding protein 75" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 67/83 (80%), Positives = 76/83 (91%)

Query:    73 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
             RYAFQTRSQVDILDDGYRWRKYGQK VKN+KFPRSYY+CT+ GCNVKKQVQR T D+E+V
Sbjct:    54 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVV 113

Query:   133 VTTYEGLHTHPIGKITDSFEQIL 155
             VTTYEG+H+HPI K T++FE IL
Sbjct:   114 VTTYEGVHSHPIEKSTENFEHIL 136

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0032107 "regulation of response to nutrient levels" evidence=IMP

GO:0043620 "regulation of DNA-dependent transcription in response to stress" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2078703 WRKY45 "WRKY DNA-binding protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 68/118 (57%), Positives = 82/118 (69%)

Query:    38 VSEFQLYSGGASGTSGSDKAKQSXXXXXXXXXXXXRYAFQTRSQVDILDDGYRWRKYGQK 97
             ++EF      A  T+ S++  +S            RYAFQTRSQVDILDDGYRWRKYGQK
Sbjct:    20 LTEFHGVDNSAQPTTSSEEKPRSKKKKKEREA---RYAFQTRSQVDILDDGYRWRKYGQK 76

Query:    98 VVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQIL 155
              VKN+ FPRSYYKCT +GC VKKQVQR   DE +VVTTY+G+HTH + K +D+F  IL
Sbjct:    77 AVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVVVTTYQGVHTHAVDKPSDNFHHIL 134

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2024583 WRKY56 "WRKY DNA-binding protein 56" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 58/112 (51%), Positives = 72/112 (64%)

Query:    46 GG--ASGTSGSDKAKQSXXXXXXXXXXXXRYAFQTRSQVDILDDGYRWRKYGQKVVKNSK 103
             GG  ++ ++ SD  K              R AF TRS  D+LDDGYRWRKYGQK VKN+ 
Sbjct:    72 GGLVSNNSNNSDHNKNCNKGKGKRTLAMQRIAFHTRSDDDVLDDGYRWRKYGQKSVKNNA 131

Query:   104 FPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQIL 155
              PRSYY+CT+  CNVKKQVQR  KD  +VVTTYEG+H HP  K+ ++   +L
Sbjct:   132 HPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLSPLL 183

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2160512 WRKY24 "WRKY DNA-binding protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 52/83 (62%), Positives = 63/83 (75%)

Query:    73 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
             R AF TRS  D+LDDGYRWRKYGQK VK++  PRSYY+CT+  CNVKKQVQR  KD  +V
Sbjct:    85 RIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVV 144

Query:   133 VTTYEGLHTHPIGKITDSFEQIL 155
             VTTYEG+H HP  K+ ++   +L
Sbjct:   145 VTTYEGVHNHPCEKLMETLNPLL 167

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062949 WRKY43 "WRKY DNA-binding protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 51/83 (61%), Positives = 64/83 (77%)

Query:    73 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
             R++F+T+S  DILDDGYRWRKYGQK VKNS +PRSYY+CT   CNVKKQVQR +K+  IV
Sbjct:    17 RFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQRLSKETSIV 76

Query:   133 VTTYEGLHTHPIGKITDSFEQIL 155
              TTYEG+H HP  ++  +   +L
Sbjct:    77 ETTYEGIHNHPCEELMQTLTPLL 99

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2157829 WRKY48 "WRKY DNA-binding protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 49/71 (69%), Positives = 59/71 (83%)

Query:    73 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
             R+AF T+S +D LDDGYRWRKYGQK VKNS +PRSYY+CT  GC VKK+V+R++ D  IV
Sbjct:   208 RFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIV 267

Query:   133 VTTYEGLHTHP 143
             +TTYEG HTHP
Sbjct:   268 MTTYEGQHTHP 278

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0003677 "DNA binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2019382 WRKY71 "WRKY DNA-binding protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 62/135 (45%), Positives = 79/135 (58%)

Query:    13 HLQSRFSASHSSLNMGIDPHAQAHAVSE-FQLYSGGASGTSGSDK--AKQSXXXXXXXXX 69
             +L S      SS N G +P    +  S+  +   G   G   S K   KQ          
Sbjct:    62 NLTSNSPVVSSSSNEG-EPKENTNDKSDQMEDNEGDLHGVGESSKQLTKQGKKKGEKKER 120

Query:    70 XXXRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDE 129
                R AF T+S++D L+DGYRWRKYGQK VKNS +PRSYY+CT + CNVKK+V+R+ +D 
Sbjct:   121 EV-RVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDP 179

Query:   130 EIVVTTYEGLHTHPI 144
              IV+TTYEG H HPI
Sbjct:   180 SIVITTYEGKHNHPI 194

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:505006317 WRKY12 "WRKY DNA-binding protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 47/70 (67%), Positives = 58/70 (82%)

Query:    73 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
             R+ FQT+S VD+LDDGY+WRKYGQKVVKNS  PRSYY+CTH  C VKK+V+R ++D  +V
Sbjct:   132 RFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMV 191

Query:   133 VTTYEGLHTH 142
             +TTYEG H H
Sbjct:   192 ITTYEGRHNH 201

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2065124 WRKY23 "WRKY DNA-binding protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 51/76 (67%), Positives = 60/76 (78%)

Query:    73 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
             R AF T+S+VD L+DGYRWRKYGQK VKNS FPRSYY+CT   CNVKK+V+R+ +D   V
Sbjct:   161 RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTV 220

Query:   133 VTTYEGLHTHPIGKIT 148
             VTTYEG HTH I  +T
Sbjct:   221 VTTYEGQHTH-ISPLT 235

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

TAIR|locus:2141872 WRKY28 "WRKY DNA-binding protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 47/72 (65%), Positives = 60/72 (83%)

Query:    73 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
             R +F T+S+VD L+DGYRWRKYGQK VKNS +PRSYY+CT + CNVKK+V+R+ +D  +V
Sbjct:   159 RVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVV 218

Query:   133 VTTYEGLHTHPI 144
             +TTYEG H HPI
Sbjct:   219 ITTYEGQHNHPI 230

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FYA2	WRK75_ARATH	No assigned EC number	0.8072	0.5123	0.5724	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-35
smart00774	59	smart00774, WRKY, DNA binding domain	3e-33

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  117 bits (295), Expect = 2e-35
 Identities = 41/59 (69%), Positives = 46/59 (77%)

Query: 85  LDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHP 143
           LDDGY WRKYGQK VK S FPRSYY+CT  GC VKKQV+R++ D +IV  TYEG H HP
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  111 bits (281), Expect = 3e-33
 Identities = 39/59 (66%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 85  LDDGYRWRKYGQKVVKNSKFPRSYYKCTH-KGCNVKKQVQRNTKDEEIVVTTYEGLHTH 142
           LDDGY+WRKYGQKV+K S +PRSYY+CT+ +GC  KKQVQR+  D  +V  TYEG HTH
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	100.0
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	93.19
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	92.44

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=100.00  E-value=4.5e-34  Score=195.98  Aligned_cols=59  Identities=69%  Similarity=1.303  Sum_probs=52.6

Q ss_pred             CCCCccccccCceeccCCCCCcccccccccCcccccceeeecCCCCEEEEEEeccCCCC
Q 031298           85 LDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHP  143 (162)
Q Consensus        85 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~gC~akK~Vqr~~~D~~~~~ttY~G~H~h~  143 (162)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            58999999999999999999999999999999999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=1.1e-32  Score=189.27  Aligned_cols=58  Identities=69%  Similarity=1.241  Sum_probs=56.5

Q ss_pred             CCCCccccccCceeccCCCCCcccccccc-cCcccccceeeecCCCCEEEEEEeccCCC
Q 031298           85 LDDGYRWRKYGQKVVKNSKFPRSYYKCTH-KGCNVKKQVQRNTKDEEIVVTTYEGLHTH  142 (162)
Q Consensus        85 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~-~gC~akK~Vqr~~~D~~~~~ttY~G~H~h  142 (162)
                      ++|||.|||||||.|+|+++||+||||++ ++|+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            48999999999999999999999999999 99999999999989999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=93.19  E-value=0.089  Score=36.78  Aligned_cols=31  Identities=32%  Similarity=0.603  Sum_probs=26.5

Q ss_pred             cCcccccceeeecCCCCEEEEEEeccCCCCCC
Q 031298          114 KGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIG  145 (162)
Q Consensus       114 ~gC~akK~Vqr~~~D~~~~~ttY~G~H~h~~~  145 (162)
                      -+|+|+=.|-+.. |+...++.+..+|||+.-
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            5999998888755 888899999999999863

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.44  E-value=0.082  Score=33.96  Aligned_cols=50  Identities=26%  Similarity=0.610  Sum_probs=24.7

Q ss_pred             ccCCCCccccccCceeccCCCCCccccccccc---CcccccceeeecCCCCEEEEEEeccCCC
Q 031298           83 DILDDGYRWRKYGQKVVKNSKFPRSYYKCTHK---GCNVKKQVQRNTKDEEIVVTTYEGLHTH  142 (162)
Q Consensus        83 ~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~---gC~akK~Vqr~~~D~~~~~ttY~G~H~h  142 (162)
                      .++-|||.-.+....      ....|++|+..   +|+|+=.+.  .++. .+ +...++|||
T Consensus        10 ~L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~-~~~~~~HnH   62 (62)
T PF04500_consen   10 KLVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RV-VRTNGEHNH   62 (62)
T ss_dssp             EEEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EE-EE-S---SS
T ss_pred             EEEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EE-EECCCccCC
Confidence            367789876555444      35689999983   899977765  2333 33 334499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		5e-23
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		7e-20

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  103 bits (256), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 52/68 (76%)
Query: 75  AFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVT 134
             QT S+VD+LDDGYRWRKYGQKVVK + +PRSYYKCT  GC V+K V+R   D + VVT
Sbjct: 7   GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66
Query: 135 TYEGLHTH 142
           TYEG H H
Sbjct: 67  TYEGKHNH 74

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 53/70 (75%)
Query: 73  RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
           R    T++  DI++DGYRWRKYGQK VK S +PRSYY+C+  GC VKK V+R++ D +++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 133 VTTYEGLHTH 142
           +TTYEG H H
Sbjct: 62  ITTYEGKHDH 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-42
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	3e-41

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  135 bits (342), Expect = 1e-42
 Identities = 45/75 (60%), Positives = 53/75 (70%)

Query: 70  KKHRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDE 129
                  QT S+VD+LDDGYRWRKYGQKVVK + +PRSYYKCT  GC V+K V+R   D 
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 130 EIVVTTYEGLHTHPI 144
           + VVTTYEG H H +
Sbjct: 62  KAVVTTYEGKHNHDL 76

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  132 bits (333), Expect = 3e-41
 Identities = 39/72 (54%), Positives = 54/72 (75%)

Query: 73  RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIV 132
           R    T++  DI++DGYRWRKYGQK VK S +PRSYY+C+  GC VKK V+R++ D +++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 133 VTTYEGLHTHPI 144
           +TTYEG H H +
Sbjct: 62  ITTYEGKHDHDM 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-37  Score=222.12  Aligned_cols=75  Identities=52%  Similarity=1.034  Sum_probs=72.3

Q ss_pred             cceeEEeecccccCCCCccccccCceeccCCCCCcccccccccCcccccceeeecCCCCEEEEEEeccCCCCCCC
Q 031298           72 HRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGK  146 (162)
Q Consensus        72 ~r~~~~t~s~~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~gC~akK~Vqr~~~D~~~~~ttY~G~H~h~~~~  146 (162)
                      .|++++|.+++++++|||.|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|.|||+.|.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            378999999999999999999999999999999999999999999999999999999999999999999999875

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=1.6e-37  Score=222.53  Aligned_cols=75  Identities=60%  Similarity=1.057  Sum_probs=69.2

Q ss_pred             cceeEEeecccccCCCCccccccCceeccCCCCCcccccccccCcccccceeeecCCCCEEEEEEeccCCCCCCC
Q 031298           72 HRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGK  146 (162)
Q Consensus        72 ~r~~~~t~s~~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~gC~akK~Vqr~~~D~~~~~ttY~G~H~h~~~~  146 (162)
                      .+++++|.+++++++|||.|||||||.|||+++||+|||||+++|+|+|+|||+.+|+.+++|||+|.|||+.|.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478899999999999999999999999999999999999999999999999999999999999999999999873

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	3e-32

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  107 bits (270), Expect = 3e-32
 Identities = 45/68 (66%), Positives = 53/68 (77%)

Query: 77  QTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTY 136
           QT S+VD+LDDGYRWRKYGQKVVK + +PRSYYKCT  GC V+K V+R   D + VVTTY
Sbjct: 2   QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTY 61

Query: 137 EGLHTHPI 144
           EG H H +
Sbjct: 62  EGKHNHDL 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.8e-37  Score=217.08  Aligned_cols=70  Identities=64%  Similarity=1.146  Sum_probs=66.8

Q ss_pred             EeecccccCCCCccccccCceeccCCCCCcccccccccCcccccceeeecCCCCEEEEEEeccCCCCCCC
Q 031298           77 QTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGK  146 (162)
Q Consensus        77 ~t~s~~~~~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~gC~akK~Vqr~~~D~~~~~ttY~G~H~h~~~~  146 (162)
                      +|.+++++++|||+|||||||.|+|+++||+||||++++|+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus         2 ~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           2 QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            5678889999999999999999999999999999999999999999999999999999999999999873