Citrus Sinensis ID: 031302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVFSL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEcccEEEEEcccccccccccccccEEccEEEEEccccccHHHHHHHHccccccccEEEHHHHHHHHHHcccccHHHHHHHccccEEEEEEEccccEEEEEEcccccccEEEc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccHHHccccccccccccccHHHHHHHHHHcccccEEEEEEcccEEEEEEcccccccccccEEEEcccHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHcccccEEEEEEEccccEEEEEEccccccEEEcc
Coil and Loop (DISEMBL)
mlaifnkglvnppqelhspaslsssrkpkhpeeIFNEFLisqssnafsinfgnaaalayvppenpnsvsqrwFCGLHNVYCMFMgslnnlsslnkqyglskgsnEAMFVIEAYRTlrdrgpypahqvlrdldgsfgfvlyDCKAGTIFAALAsplnsfvfsl
Flexible Loop (DISEMBL)
mlaifnkglvnppqelhspaslsssrkPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVFSL
Low Complexity Region (SEG)
MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVFSL
Disordered region (IsUnstruct)
*********************************IFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF**
Disordered Region (DISOPRED)
MLAIFNKGLVNP*************************FLISQSSNAFSINFGNAAALAYVPP*****VSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVFSL
Disordered Region (DISEMBL)
MLAIFNKGLVNPPQE**************HPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVFSL
Disordered Region (DISPRO)
ML**FNKGLVNPPQELHS**********KHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVFSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVFSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
P24805	149	Stem-specific protein TSJ	N/A	no	0.907	0.986	0.397	3e-26

>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1

 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 4/151 (2%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLI-SQSSNAFSINFGNAAALAY 59
           MLA+F + +  PP EL  P +    ++ K  EEI   F    Q S  + +  GN  A ++
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSH 60

Query: 60  VPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDR 119
               N N +  R    + +V+C+F G+L+N   L K YGLS+ + EAM ++EAY+ LRDR
Sbjct: 61  ---GNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDR 117

Query: 120 GPYPAHQVLRDLDGSFGFVLYDCKAGTIFAA 150
            PYP  QV+++L+G F F+L+D KA T+F A
Sbjct: 118 APYPPDQVIKELEGKFAFILFDSKASTLFLA 148

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
255556005	255	Stem-specific protein TSJT1, putative [R	0.944	0.6	0.725	8e-62
118489868	255	unknown [Populus trichocarpa x Populus d	0.938	0.596	0.717	5e-58
224125458	255	predicted protein [Populus trichocarpa]	0.938	0.596	0.717	5e-58
151347488	252	unknown [Carica papaya]	0.944	0.607	0.699	6e-58
224077142	255	predicted protein [Populus trichocarpa]	0.944	0.6	0.699	2e-57
359497046	266	PREDICTED: stem-specific protein TSJT1-l	0.944	0.575	0.679	4e-56
359497096	256	PREDICTED: stem-specific protein TSJT1-l	0.944	0.597	0.679	6e-56
224114988	255	predicted protein [Populus trichocarpa]	0.944	0.6	0.673	1e-55
356543282	254	PREDICTED: stem-specific protein TSJT1-l	0.944	0.602	0.660	2e-54
449446945	254	PREDICTED: stem-specific protein TSJT1-l	0.944	0.602	0.647	2e-53

>gi|255556005|ref|XP_002519037.1| Stem-specific protein TSJT1, putative [Ricinus communis] gi|223541700|gb|EEF43248.1| Stem-specific protein TSJT1, putative [Ricinus communis]

 Score =  241 bits (615), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 111/153 (72%), Positives = 138/153 (90%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
           MLAIFNKGLVNPPQEL+SPASL+SSRKP+ PE+I  +F  S  SNAFSI+FG++A+LAY+
Sbjct: 1   MLAIFNKGLVNPPQELNSPASLASSRKPQLPEQILKDFASSDLSNAFSISFGDSASLAYI 60

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
           PP+NP  + QR FCGL++VYC+F+GSLNNL SLN+QYGLSKG+NEAMFVIEAY+TLRDRG
Sbjct: 61  PPKNPFPIHQRLFCGLNDVYCIFLGSLNNLCSLNRQYGLSKGTNEAMFVIEAYKTLRDRG 120

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALAS 153
           PYPAHQVL++L+G+FGFV+YD K+G +FAAL +
Sbjct: 121 PYPAHQVLKELEGTFGFVVYDTKSGHVFAALGA 153

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489868|gb|ABK96732.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 126/152 (82%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
           MLAIFNKGLVNPPQEL+SPASL SSRKPK PEEI  +F+ +   NAFS++FG+AA LAY+
Sbjct: 1   MLAIFNKGLVNPPQELYSPASLCSSRKPKLPEEIVKDFVSANPPNAFSLSFGDAALLAYI 60

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
            P N     QR  CGL  +YC+F+GSLNNL SLNKQYGLSK +NEAMF+IEAYRTLRDRG
Sbjct: 61  QPGNSYPRHQRLLCGLDGIYCIFLGSLNNLCSLNKQYGLSKCTNEAMFIIEAYRTLRDRG 120

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALA 152
           PYPAH+VL+DLDG FGFV+YD KAG +FAAL 
Sbjct: 121 PYPAHKVLQDLDGRFGFVVYDTKAGQVFAALG 152

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125458|ref|XP_002329810.1| predicted protein [Populus trichocarpa] gi|222870872|gb|EEF08003.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/152 (71%), Positives = 126/152 (82%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
           MLAIFNKGLVNPPQEL+SPASL SSRKPK PEEI  +F+ +   NAFS++FG+AA LAY+
Sbjct: 1   MLAIFNKGLVNPPQELYSPASLCSSRKPKLPEEIVKDFVSANPPNAFSLSFGDAALLAYI 60

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
            P N     QR  CGL  +YC+F+GSLNNL SLNKQYGLSK +NEAMF+IEAYRTLRDRG
Sbjct: 61  QPGNSYPRHQRLLCGLDGIYCIFLGSLNNLCSLNKQYGLSKCTNEAMFIIEAYRTLRDRG 120

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALA 152
           PYPAH+VL+DLDG FGFV+YD KAG +FAAL 
Sbjct: 121 PYPAHKVLQDLDGRFGFVVYDTKAGQVFAALG 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|151347488|gb|ABS01353.1| unknown [Carica papaya]

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 107/153 (69%), Positives = 128/153 (83%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
           MLA+FNKGLVNPP+EL SPASL SS+KPK P+EI N+F  S  +NAFS+ FG+AA LAY 
Sbjct: 1   MLAVFNKGLVNPPEELRSPASLGSSKKPKLPQEILNDFSSSHPTNAFSVCFGDAALLAYS 60

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
           P +N +S SQR FCG ++V+C+F+GSLNNL SLNKQYGLSKG +EA+F IEAYRTLRDRG
Sbjct: 61  PSQNSHSKSQRLFCGYNDVHCIFLGSLNNLCSLNKQYGLSKGGDEAVFAIEAYRTLRDRG 120

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALAS 153
           PYPAHQVL+DLDG FGFV+YD KA  +F AL +
Sbjct: 121 PYPAHQVLKDLDGDFGFVIYDAKAQNVFVALGA 153

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077142|ref|XP_002305151.1| predicted protein [Populus trichocarpa] gi|222848115|gb|EEE85662.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/153 (69%), Positives = 127/153 (83%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
           MLAIFNKGLVNPPQEL+SPASL SSRKPK PEEI  +F+ S  SNAF+++FG++A LA +
Sbjct: 1   MLAIFNKGLVNPPQELYSPASLCSSRKPKLPEEIVKDFVSSNPSNAFTMSFGDSALLACI 60

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
              N     QR FCGL  +YC+F+GSLNN+ SLNKQYGLSKG+NEAM VIEAYRTLRDRG
Sbjct: 61  SQGNSYPRQQRLFCGLDGIYCIFLGSLNNVCSLNKQYGLSKGTNEAMLVIEAYRTLRDRG 120

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALAS 153
           PYPAH+VL+D+DG FGFV+YD KAG +FAAL +
Sbjct: 121 PYPAHKVLQDMDGRFGFVVYDSKAGQVFAALGA 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497046|ref|XP_003635407.1| PREDICTED: stem-specific protein TSJT1-like [Vitis vinifera] gi|296088194|emb|CBI35710.3| unnamed protein product [Vitis vinifera]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 104/153 (67%), Positives = 125/153 (81%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
           MLAIFNKGLV PPQEL+SPAS+  S KPK PEE   +F    S+NAF I+ G+AA L+Y+
Sbjct: 1   MLAIFNKGLVEPPQELNSPASVKVSVKPKVPEETLKDFQSCHSTNAFLISLGDAALLSYI 60

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
           PP  P S   R+FCGL ++YC+F+G+LNNL SL +QYGLSKG+NEAM VIEAYRTLRDRG
Sbjct: 61  PPCPPYSTQHRFFCGLDDIYCIFLGTLNNLCSLIRQYGLSKGTNEAMLVIEAYRTLRDRG 120

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALAS 153
           PYPA QVL+D+DGSFGFVL+D KAGT+FAAL +
Sbjct: 121 PYPADQVLKDMDGSFGFVLFDSKAGTVFAALGA 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497096|ref|XP_003635423.1| PREDICTED: stem-specific protein TSJT1-like [Vitis vinifera] gi|296090652|emb|CBI41052.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 104/153 (67%), Positives = 125/153 (81%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
           MLAIFNKGLV PPQEL+SPAS+  S KPK PEE   +F    S+NAF I+ G+AA L+Y+
Sbjct: 1   MLAIFNKGLVEPPQELNSPASVKVSVKPKVPEETLKDFQSCHSTNAFLISLGDAALLSYI 60

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
           PP  P S   R+FCGL ++YC+F+G+LNNL SL +QYGLSKG+NEAM VIEAYRTLRDRG
Sbjct: 61  PPCPPYSTQHRFFCGLDDIYCIFLGTLNNLCSLIRQYGLSKGTNEAMLVIEAYRTLRDRG 120

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALAS 153
           PYPA QVL+D+DGSFGFVL+D KAGT+FAAL +
Sbjct: 121 PYPADQVLKDMDGSFGFVLFDSKAGTVFAALGA 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114988|ref|XP_002316911.1| predicted protein [Populus trichocarpa] gi|222859976|gb|EEE97523.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/153 (67%), Positives = 122/153 (79%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
           MLAIF+K   NPP+EL+SPAS  S+RKPK P+E  +EFL       FSINFG AA LAYV
Sbjct: 1   MLAIFHKAFANPPEELNSPASQRSTRKPKLPDETLSEFLSHHPQKTFSINFGEAAVLAYV 60

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
           P ++P S  QR FCG   +YC+F GSLNNL +LNKQYGL+KG+NEAMFVIEA++TLRDRG
Sbjct: 61  PQDSPFSPQQRLFCGFEGIYCLFSGSLNNLCTLNKQYGLTKGTNEAMFVIEAFKTLRDRG 120

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALAS 153
           PYPA QV++DLDGSF FV+YD KAGT+FAAL S
Sbjct: 121 PYPADQVVKDLDGSFAFVIYDSKAGTVFAALGS 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543282|ref|XP_003540091.1| PREDICTED: stem-specific protein TSJT1-like [Glycine max]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/153 (66%), Positives = 124/153 (81%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
           ML+IF+KG  +PP+EL SPAS S S KPK PEE   EFL     N FS++FG++A LAY 
Sbjct: 1   MLSIFHKGFAHPPEELKSPASNSGSNKPKIPEETLREFLSHHPHNTFSLSFGHSAVLAYT 60

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
            P+ P+ V QR FCG+ ++YC+F+GSLNNL SLNKQYGL+KG+NEAMFVIEAY+TLRDRG
Sbjct: 61  RPDPPSFVHQRLFCGIDDIYCIFLGSLNNLCSLNKQYGLAKGTNEAMFVIEAYKTLRDRG 120

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALAS 153
           PYPA QV++DLDGSFGFV+YD K G++FAAL S
Sbjct: 121 PYPADQVVKDLDGSFGFVVYDSKVGSVFAALGS 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446945|ref|XP_004141230.1| PREDICTED: stem-specific protein TSJT1-like [Cucumis sativus]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/153 (64%), Positives = 122/153 (79%)

Query: 1   MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
           MLAIF++   +PP+EL SPAS S S+ PK P+E  N+F+     N FSINFG AA LAYV
Sbjct: 1   MLAIFHQTFAHPPEELKSPASFSGSKAPKLPQETLNDFISRHPQNTFSINFGQAAVLAYV 60

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
            P++ + V QR FCG  ++YC+F+GSLNNL +LNKQYGLSKGSNEAMF+IEAYRTLRDRG
Sbjct: 61  SPQSFSLVHQRLFCGFDDIYCLFLGSLNNLCALNKQYGLSKGSNEAMFLIEAYRTLRDRG 120

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALAS 153
           PYPA QVL++LDGSF FV+YD +AG +FAAL +
Sbjct: 121 PYPADQVLKELDGSFAFVVYDSRAGAVFAALGA 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2123994	250	AT4G27450 "AT4G27450" [Arabido	0.944	0.612	0.633	1.2e-49
TAIR|locus:2090116	253	AT3G15450 "AT3G15450" [Arabido	0.932	0.596	0.616	6.2e-46
TAIR|locus:2170822	251	AT5G43830 "AT5G43830" [Arabido	0.907	0.585	0.44	3.9e-28
TAIR|locus:2182137	234	AILP1 "AT5G19140" [Arabidopsis	0.907	0.628	0.42	7.3e-27
TAIR|locus:2084598	248	AT3G22850 "AT3G22850" [Arabido	0.895	0.584	0.410	1.8e-23

TAIR|locus:2123994 AT4G27450 "AT4G27450" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 97/153 (63%), Positives = 119/153 (77%)

Query:     1 MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
             MLAIF++   +PP+EL+SPAS   S++PK PEE  N+FL+    N FS++FG AA LAYV
Sbjct:     1 MLAIFHEAFAHPPEELNSPASEKCSKQPKLPEETLNDFLLRYPLNTFSMSFGQAAVLAYV 60

Query:    61 PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
              P    S+ QR FCG  ++YC+F GSLNNL  LNKQYGL+K +NEAMFVIEAYRTLRDRG
Sbjct:    61 RPSASFSIHQRLFCGFDDIYCLFFGSLNNLCQLNKQYGLTKTTNEAMFVIEAYRTLRDRG 120

Query:   121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAALAS 153
             PYPA QV++DLDGSF FV+YD KAG++F AL S
Sbjct:   121 PYPADQVVKDLDGSFSFVVYDSKAGSVFTALGS 153

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:2090116 AT3G15450 "AT3G15450" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 95/154 (61%), Positives = 117/154 (75%)

Query:     1 MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
             MLAIF K   +PP+EL+SPAS  S + PK P E  ++FL    +NAFS+NFG++A LAY 
Sbjct:     1 MLAIFQKAFAHPPEELNSPASHFSGKTPKLPGETLSDFLSHHQNNAFSMNFGDSAVLAYA 60

Query:    61 PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLS-KGSNEAMFVIEAYRTLRDR 119
               E   S+ QR FCGL  +YCMF+G LNNL +LN+QYGLS K SNEAMFVIEAYRTLRDR
Sbjct:    61 RQET--SLRQRLFCGLDGIYCMFLGRLNNLCTLNRQYGLSGKNSNEAMFVIEAYRTLRDR 118

Query:   120 GPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALAS 153
             GPYPA QVLR L+GSF FV+YD +  ++F+AL+S
Sbjct:   119 GPYPADQVLRGLEGSFAFVVYDTQTSSVFSALSS 152

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2170822 AT5G43830 "AT5G43830" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 66/150 (44%), Positives = 95/150 (63%)

Query:     1 MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
             MLA+F K + N P+ L SP S  S+   K    +   F  S + N+ ++NFG++  +AY 
Sbjct:     1 MLAVFEKTVANSPEALQSPHSSESAFALKDGS-LATHFA-SVNPNSVTLNFGSSGFVAY- 57

Query:    61 PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
               +NP+    R F  + +++C+F G + NL  L +QYGL+K +NEA+ VIEAYRTLRDRG
Sbjct:    58 SLDNPDPRVPRLFAVVDDIFCLFQGHIENLPFLKQQYGLNKITNEAIIVIEAYRTLRDRG 117

Query:   121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAA 150
             PYP  +V+RD  G F F+L+D    T+FAA
Sbjct:   118 PYPVDKVVRDFHGKFAFILFDSVKKTVFAA 147

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2182137 AILP1 "AT5G19140" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 63/150 (42%), Positives = 92/150 (61%)

Query:     1 MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
             ML IF+  +V+PP+EL +  S + S K      + N F + ++ +A S+  G+   LAY 
Sbjct:     1 MLGIFSGAIVSPPEELVAAGSRTPSPKTTG-STLVNRF-VEKNPSAVSVQVGDYVQLAY- 57

Query:    61 PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
                N + +  R F     ++C+F GSL+NL SL +QYGL+K +NE + VIEAY+TLRDR 
Sbjct:    58 SHHNESPLRPRSFGAKDEIFCLFQGSLDNLGSLKQQYGLAKNANEVLLVIEAYKTLRDRA 117

Query:   121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAA 150
             PYPA+ V+  L G F FV++D    T+F A
Sbjct:   118 PYPANHVVAHLSGDFAFVVFDKSTSTLFVA 147

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010044 "response to aluminum ion" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2084598 AT3G22850 "AT3G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 62/151 (41%), Positives = 86/151 (56%)

Query:     1 MLAIFNKGLVNPPQELHSPASLS-SSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAY 59
             MLAIF+K +   P+ L      S  + K +    + N F  S    A +IN G++  +A 
Sbjct:     1 MLAIFDKNVAKTPEALQGQEGGSVCALKDRF---LPNHFS-SVYPGAVTINLGSSGFIA- 55

Query:    60 VPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDR 119
                E  N +  R F  + +++C+F G + N+  L +QYGL+K + E   VIEAYRTLRDR
Sbjct:    56 CSLEKQNPLLPRLFAVVDDMFCIFQGHIENVPILKQQYGLTKTATEVTIVIEAYRTLRDR 115

Query:   120 GPYPAHQVLRDLDGSFGFVLYDCKAGTIFAA 150
             GPY A QV+RD  G FGF+LYDC    +F A
Sbjct:   116 GPYSAEQVVRDFQGKFGFMLYDCSTQNVFLA 146


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      162       162   0.00079  107 3  11 22  0.36    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  145 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.63u 0.13s 15.76t   Elapsed:  00:00:01
  Total cpu time:  15.63u 0.13s 15.76t   Elapsed:  00:00:01
  Start:  Mon May 20 21:35:50 2013   End:  Mon May 20 21:35:51 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
pfam12481	228	pfam12481, DUF3700, Aluminium induced protein	5e-82
cd01910	224	cd01910, Wali7, This domain is present in Wali7, a	2e-68
cd00352	220	cd00352, Gn_AT_II, Glutamine amidotransferases cla	7e-09

>gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein

 Score =  240 bits (616), Expect = 5e-82
 Identities = 86/151 (56%), Positives = 112/151 (74%), Gaps = 3/151 (1%)

Query: 2   LAIFNKGLVNPPQELHSPAS-LSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYV 60
           LA+F+K +  PP+EL+SPAS L SS K K PEE+  +F+ S + NA S+NFG++A LAY 
Sbjct: 1   LAVFHKSVAKPPEELNSPASRLPSSAKKKGPEELLKDFV-SANPNAVSVNFGDSAFLAYS 59

Query: 61  PPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRG 120
                + +  R F  + +++C+F G L NL+SL +QYGLSK +NEAM VIEAYRTLRDRG
Sbjct: 60  H-SKQSPLLPRLFAVVDDIFCLFQGHLENLASLRQQYGLSKTANEAMLVIEAYRTLRDRG 118

Query: 121 PYPAHQVLRDLDGSFGFVLYDCKAGTIFAAL 151
           PYPA QV++DL+GSF FVLYD K GT+F AL
Sbjct: 119 PYPADQVVKDLEGSFAFVLYDSKTGTVFVAL 149

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228

>gnl|CDD|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum

 Score =  206 bits (527), Expect = 2e-68
 Identities = 75/150 (50%), Positives = 95/150 (63%), Gaps = 5/150 (3%)

Query: 2   LAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVP 61
           LA+F+K +  PP+EL S  S       K  EE+   FL +  S  F  + G A  LAY  
Sbjct: 1   LAVFSKAVAKPPEELVSAGS---RTPAKTAEELLKRFLSANPSAVFV-HLGAAGFLAYSH 56

Query: 62  PENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGP 121
             N + +  R F    +++C+F G L+NL SL +QYGLSK +NEAM VIEAYRTLRDRGP
Sbjct: 57  -HNQSPLHPRLFAVKDDIFCLFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGP 115

Query: 122 YPAHQVLRDLDGSFGFVLYDCKAGTIFAAL 151
           YPA QV++DL+GSF FVLYD K  T+F A 
Sbjct: 116 YPADQVVKDLEGSFAFVLYDKKTSTVFVAS 145

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits. Length = 224

>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase)

 Score = 52.5 bits (126), Expect = 7e-09
 Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 17/101 (16%)

Query: 78  NVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPY------PAHQVLRDL 131
            +  +  G + N   L ++        E     E    L +R              L+ L
Sbjct: 97  RIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRL 156

Query: 132 DGSFGFVLYDCKAGTIFAAL----ASPL-------NSFVFS 161
           DG F F L+D K   +FAA       PL          VF+
Sbjct: 157 DGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFA 197

The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer. Length = 220

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
PF12481	228	DUF3700: Aluminium induced protein ; InterPro: IPR	100.0
cd01910	224	Wali7 This domain is present in Wali7, a protein o	100.0
COG0367	542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	99.94
cd01909	199	betaLS_CarA_N Glutamine amidotransferases class-II	99.93
PTZ00077	586	asparagine synthetase-like protein; Provisional	99.93
TIGR01536	467	asn_synth_AEB asparagine synthase (glutamine-hydro	99.93
PRK09431	554	asnB asparagine synthetase B; Provisional	99.93
PLN02549	578	asparagine synthase (glutamine-hydrolyzing)	99.92
TIGR03104	589	trio_amidotrans asparagine synthase family amidotr	99.92
TIGR03108	628	eps_aminotran_1 exosortase 1 system-associated ami	99.91
PF13537	125	GATase_7: Glutamine amidotransferase domain; PDB:	99.91
cd03766	181	Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn	99.9
cd00712	220	AsnB Glutamine amidotransferases class-II (GATase)	99.88
cd00714	215	GFAT Glutamine amidotransferases class-II (Gn-AT)_	99.8
PF13522	133	GATase_6: Glutamine amidotransferase domain	99.79
PRK08525	445	amidophosphoribosyltransferase; Provisional	99.77
KOG0571	543	consensus Asparagine synthase (glutamine-hydrolyzi	99.76
cd00352	220	Gn_AT_II Glutamine amidotransferases class-II (GAT	99.73
PRK07631	475	amidophosphoribosyltransferase; Provisional	99.71
PRK09123	479	amidophosphoribosyltransferase; Provisional	99.71
PRK06388	474	amidophosphoribosyltransferase; Provisional	99.71
cd01907	249	GlxB Glutamine amidotransferases class-II (Gn-AT)_	99.71
PRK00331	604	glucosamine--fructose-6-phosphate aminotransferase	99.7
TIGR01135	607	glmS glucosamine--fructose-6-phosphate aminotransf	99.69
cd00715	252	GPATase_N Glutamine amidotransferases class-II (GN	99.69
PRK07349	500	amidophosphoribosyltransferase; Provisional	99.69
PRK08341	442	amidophosphoribosyltransferase; Provisional	99.68
PRK07272	484	amidophosphoribosyltransferase; Provisional	99.68
PRK07847	510	amidophosphoribosyltransferase; Provisional	99.67
PRK06781	471	amidophosphoribosyltransferase; Provisional	99.65
PLN02440	479	amidophosphoribosyltransferase	99.64
PTZ00295	640	glucosamine-fructose-6-phosphate aminotransferase;	99.63
PRK05793	469	amidophosphoribosyltransferase; Provisional	99.62
PTZ00394	670	glucosamine-fructose-6-phosphate aminotransferase;	99.6
PRK09246	501	amidophosphoribosyltransferase; Provisional	99.58
TIGR01134	442	purF amidophosphoribosyltransferase. Alternate nam	99.56
PLN02981	680	glucosamine:fructose-6-phosphate aminotransferase	99.52
COG0449	597	GlmS Glucosamine 6-phosphate synthetase, contains	99.11
COG0034	470	PurF Glutamine phosphoribosylpyrophosphate amidotr	98.91
KOG0573	520	consensus Asparagine synthase [Amino acid transpor	98.49
cd00713	413	GltS Glutamine amidotransferases class-II (Gn-AT),	98.43
KOG0572	474	consensus Glutamine phosphoribosylpyrophosphate am	98.34
cd01908	257	YafJ Glutamine amidotransferases class-II (Gn-AT)_	98.26
PF00310	361	GATase_2: Glutamine amidotransferases class-II; In	97.96
KOG1268	670	consensus Glucosamine 6-phosphate synthetases, con	97.85
TIGR03442	251	conserved hypothetical protein TIGR03442. Members	97.46
PF09147	201	DUF1933: Domain of unknown function (DUF1933); Int	95.98
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	88.69
PF13230	271	GATase_4: Glutamine amidotransferases class-II; PD	87.28

>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length

Probab=100.00  E-value=1.6e-61  Score=404.14  Aligned_cols=157  Identities=59%  Similarity=1.024  Sum_probs=151.7

Q ss_pred             eeeecCCCCCCCcCCCCCCCC-CCCCCCCChHHHHHHhhhcCCCCcEEEEeCCceeEEeeCCCCCCCCCcceeecCCcEE
Q 031302            2 LAIFNKGLVNPPQELHSPASL-SSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVY   80 (162)
Q Consensus         2 LavF~k~va~~PeeL~sp~~~-~~~~~~~~~~~l~~~F~~~~~~~a~s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~   80 (162)
                      ||||+|+||++||||+||++. .+++++|+++||+++|+++|| +||||+||++++|||||++|+ +++||+|++.|||+
T Consensus         1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p-~a~s~~~g~~~~lAys~~~~~-~l~pR~F~~~DdIf   78 (228)
T PF12481_consen    1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANP-NAFSMNFGDSAALAYSHSNQS-SLHPRLFAGVDDIF   78 (228)
T ss_pred             CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCC-CeEEEEcCCCEEEEEecCCCC-ccccccccccCCEE
Confidence            899999999999999999975 445679999999999999999 999999999999999999999 99999999999999


Q ss_pred             EEEcceecCHHHHHHHhCCCCCCchHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302           81 CMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus        81 ~vFNGeIyN~~eLr~q~G~~ks~sE~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      |+|.|.|.|+..||||||++|++||+++||||||+||||||||+||||++|+|.|||||||+++++||+|||++|.-+++
T Consensus        79 CiF~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLy  158 (228)
T PF12481_consen   79 CIFLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLY  158 (228)
T ss_pred             EEEecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987653

There are two conserved sequence motifs: YGL and LRDR.

>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum

Probab=100.00  E-value=2e-57  Score=379.73  Aligned_cols=154  Identities=47%  Similarity=0.808  Sum_probs=148.1

Q ss_pred             eeeecCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHhhhcCCCCcEEEEeCCceeEEeeCCCCCCCCCcceeecCCcEEE
Q 031302            2 LAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYC   81 (162)
Q Consensus         2 LavF~k~va~~PeeL~sp~~~~~~~~~~~~~~l~~~F~~~~~~~a~s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~   81 (162)
                      ||||+|+||++||||+||++.+   .+++++||+++|+++|| ++|||+||+++.|||+|++|+ +++||+|+++++++|
T Consensus         1 laif~~~~~~~p~el~~~~~~~---~~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~a~~~~~~~-~~~~rl~~~~~~~~~   75 (224)
T cd01910           1 LAVFSKAVAKPPEELVSAGSRT---PAKTAEELLKRFLSANP-SAVFVHLGAAGFLAYSHHNQS-PLHPRLFAVKDDIFC   75 (224)
T ss_pred             CcccccccCCCChHHcCCCccc---cCCCHHHHHHHHHhcCC-CcEEEEcCCceEEEEecCCCC-cccCcEECCCCCEEE
Confidence            8999999999999999998742   36788899999999999 799999999999999999999 999999999999999


Q ss_pred             EEcceecCHHHHHHHhCCCCCCchHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302           82 MFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus        82 vFNGeIyN~~eLr~q~G~~ks~sE~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      +|||||||+.+||+|||+.+++||+|+||++|++||||||||+++++++|+|||||||||++++++|+|||++|+|+++
T Consensus        76 vfnGeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLY  154 (224)
T cd01910          76 LFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLY  154 (224)
T ss_pred             EEEeEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceE
Confidence            9999999999999999988999999999999999999999999999999999999999999999999999999999975

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

Probab=99.94  E-value=2e-26  Score=211.35  Aligned_cols=101  Identities=18%  Similarity=0.280  Sum_probs=91.0

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCch
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYPA  124 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp~  124 (162)
                      +.||+ .+|+++...+.   +||+....++++++||||||||.|||+++   |+ .+|++|+|||+++|++|+       
T Consensus        43 ~~~gh-~rL~i~d~~~g---~QP~~~~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvil~~y~~~g-------  111 (542)
T COG0367          43 ALLGH-RRLSIVDLSGG---RQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYEEWG-------  111 (542)
T ss_pred             ceeee-eEEEEeccccC---CCCcccCCCcEEEEECCEeeeHHHHHHHHHhcCceeccccchHHHHHHHHHHH-------
Confidence            56777 89999998875   67888877789999999999999999998   45 599999999999999975       


Q ss_pred             hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          125 HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       125 ~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      .+|+++|+|||||||||.++++||+|||++|+|+++
T Consensus       112 ~~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLy  147 (542)
T COG0367         112 EDCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLY  147 (542)
T ss_pred             HHHHHHhccceEEEEEECCCCEEEEEecCCCccccE
Confidence            479999999999999999999999999999999975

>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type

Probab=99.93  E-value=5.8e-26  Score=186.48  Aligned_cols=80  Identities=19%  Similarity=0.192  Sum_probs=72.3

Q ss_pred             eecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECCCCeEE
Q 031302           73 FCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIF  148 (162)
Q Consensus        73 f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~~~~lf  148 (162)
                      .+..+++++||||||||+.|||+++   |. .++.||+|||+++|++||       .+++++|+|||||+|||++ ++|+
T Consensus        46 ~~~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~~G-------~~~l~~L~G~FAfai~D~~-~~L~  117 (199)
T cd01909          46 VARSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTRLG-------LHAFRLAEGDFCFFIEDGN-GRLT  117 (199)
T ss_pred             EeeCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHh-------HHHHHHcCEEEEEEEEcCC-CEEE
Confidence            3555689999999999999999997   33 489999999999999864       4899999999999999999 9999


Q ss_pred             EEecCCCccccc
Q 031302          149 AALASPLNSFVF  160 (162)
Q Consensus       149 lARD~~G~k~~~  160 (162)
                      +||||+|+|++.
T Consensus       118 laRDr~GikPLY  129 (199)
T cd01909         118 LATDHAGSVPVY  129 (199)
T ss_pred             EEECCCCCcCeE
Confidence            999999999975

Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (

>PTZ00077 asparagine synthetase-like protein; Provisional

Probab=99.93  E-value=7.8e-26  Score=209.22  Aligned_cols=101  Identities=24%  Similarity=0.306  Sum_probs=89.3

Q ss_pred             EeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCchh
Q 031302           50 NFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYPAH  125 (162)
Q Consensus        50 ~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp~~  125 (162)
                      .+|+ .+||++.....   +||+++.+++++++|||||||+.+||++|   |+ .+|.||+|||+++|++|   |+   +
T Consensus        50 ~lgh-~RLsIvd~~~g---~QP~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~~---G~---~  119 (586)
T PTZ00077         50 ILAH-ERLAIVDLSDG---KQPLLDDDETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKEY---GP---K  119 (586)
T ss_pred             EEEe-ccceecCCCCC---CCCcCCCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHh---CH---H
Confidence            4666 78999987433   68888988899999999999999999998   45 48999999999999985   52   3


Q ss_pred             hhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          126 QVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       126 ~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      +++++|+|||||+|||++++++++|||++|+|+++
T Consensus       120 ~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLy  154 (586)
T PTZ00077        120 DFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLY  154 (586)
T ss_pred             HHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeE
Confidence            79999999999999999999999999999999985

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)

Probab=99.93  E-value=1.8e-25  Score=198.51  Aligned_cols=101  Identities=21%  Similarity=0.335  Sum_probs=90.8

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhHhcCCCch
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GLS-KGSNEAMFVIEAYRTLRDRGPYPA  124 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-ks~sE~eviieaY~~~~drGpyp~  124 (162)
                      +.||+ ++|++++.+..   .||+.+..+++++||||||||+.|||++|   |+. ++.||+|+|+++|++||       
T Consensus        42 ~~lgh-~rl~i~d~~~~---~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~~D~e~il~~y~~~g-------  110 (467)
T TIGR01536        42 AILGH-RRLAIIDLSGG---AQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHLYEEWG-------  110 (467)
T ss_pred             EEEEE-EEeEEeCCCCC---CCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccCCCCHHHHHHHHHHHHH-------
Confidence            56788 89999987443   78888888899999999999999999997   553 88999999999999875       


Q ss_pred             hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          125 HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       125 ~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      .+++++|+|||||+|||++++++++|||++|+|+++
T Consensus       111 ~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLy  146 (467)
T TIGR01536       111 EECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLY  146 (467)
T ss_pred             HHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeE
Confidence            589999999999999999999999999999999985

This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.

>PRK09431 asnB asparagine synthetase B; Provisional

Probab=99.93  E-value=1.3e-25  Score=206.38  Aligned_cols=100  Identities=20%  Similarity=0.284  Sum_probs=88.9

Q ss_pred             EeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhC--C-CCCCchHHHHHHHHHHhHhcCCCchhh
Q 031302           50 NFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG--L-SKGSNEAMFVIEAYRTLRDRGPYPAHQ  126 (162)
Q Consensus        50 ~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G--~-~ks~sE~eviieaY~~~~drGpyp~~~  126 (162)
                      .||+ .+||+++....   .||+++.+++++++|||||||+.|||+++.  + .++.||+|||+++|++||       .+
T Consensus        45 ~lgh-~RLsIid~~~g---~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Evil~ly~~~G-------~~  113 (554)
T PRK09431         45 ILGH-ERLSIVDVNGG---AQPLYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSDCEVILALYQEKG-------PD  113 (554)
T ss_pred             EEEE-EEeeecCCCCC---CCCCCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCCCHHHHHHHHHHHHH-------HH
Confidence            4666 88999987433   688888889999999999999999999984  3 489999999999999865       47


Q ss_pred             hhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          127 VLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       127 ~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      ++++|+|||||||||.+++++++|||++|+|+++
T Consensus       114 ~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLy  147 (554)
T PRK09431        114 FLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLY  147 (554)
T ss_pred             HHHhCCCceEEEEEECCCCEEEEEeCCCCCcceE
Confidence            9999999999999999999999999999999985

>PLN02549 asparagine synthase (glutamine-hydrolyzing)

Probab=99.92  E-value=7.7e-25  Score=202.45  Aligned_cols=100  Identities=19%  Similarity=0.273  Sum_probs=88.8

Q ss_pred             EeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhC-C-CCCCchHHHHHHHHHHhHhcCCCchhhh
Q 031302           50 NFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG-L-SKGSNEAMFVIEAYRTLRDRGPYPAHQV  127 (162)
Q Consensus        50 ~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G-~-~ks~sE~eviieaY~~~~drGpyp~~~~  127 (162)
                      .||+ .+|++.....   -.||+++.+++++++|||||||+.+||++++ + .+|.||+|||+++|++||       .++
T Consensus        45 ~Lgh-~RLsI~d~~~---g~QP~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evil~ly~~~G-------~~~  113 (578)
T PLN02549         45 YLAH-ERLAIMDPES---GDQPLYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGSDCEVIAHLYEEHG-------EEF  113 (578)
T ss_pred             EEEE-eeeeEeCCCC---CCCCcCcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-------HHH
Confidence            4666 7888888633   3688888888999999999999999999985 3 589999999999999865       489


Q ss_pred             hhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          128 LRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       128 l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      +++|+|||||||||.+++++++|||++|+|+++
T Consensus       114 ~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLy  146 (578)
T PLN02549        114 VDMLDGMFSFVLLDTRDNSFIAARDHIGITPLY  146 (578)
T ss_pred             HHhCCCceEEEEEECCCCEEEEEECCCCCCCeE
Confidence            999999999999999999999999999999985

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase

Probab=99.92  E-value=9.7e-25  Score=200.89  Aligned_cols=102  Identities=15%  Similarity=0.296  Sum_probs=89.9

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCch
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYPA  124 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp~  124 (162)
                      +.+|+ ++|++++....  -+||+.+..+++++||||||||+.|||+++   |+ .++.||+|||+++|++||       
T Consensus        43 ~~lgh-~rl~i~~~~~~--~~QP~~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evil~~y~~~G-------  112 (589)
T TIGR03104        43 VALGH-RRLKIIDLSEA--SQQPMVDAELGLALVFNGCIYNYRELRAELEALGYRFFSDGDTEVILKAYHAWG-------  112 (589)
T ss_pred             EEEEE-EeeEecCCCcC--CCCCeECCCCCEEEEECCEecCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHH-------
Confidence            56777 88999876432  367788888899999999999999999997   55 488999999999999875       


Q ss_pred             hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          125 HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       125 ~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      .+++++|+|||||+|||..++++++||||+|+|+++
T Consensus       113 ~~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLy  148 (589)
T TIGR03104       113 RDCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLY  148 (589)
T ss_pred             HHHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeE
Confidence            589999999999999999999999999999999975

Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1

Probab=99.91  E-value=4.6e-24  Score=196.12  Aligned_cols=101  Identities=20%  Similarity=0.336  Sum_probs=89.6

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhHhcCCCch
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GLS-KGSNEAMFVIEAYRTLRDRGPYPA  124 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~~-ks~sE~eviieaY~~~~drGpyp~  124 (162)
                      +.+|+ ++|++++....   .||+.+..++++|||||||||+.|||+++   |+. ++.||+|+|+++|++||       
T Consensus        44 ~~lgh-~rl~i~d~~~~---~qP~~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi~~~~~~~g-------  112 (628)
T TIGR03108        44 IGLGH-RRLSIIDLSGG---QQPLFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWEEWG-------  112 (628)
T ss_pred             EEEEE-EeeeecCCCCC---CCCcCcCCCCEEEEECCeECCHHHHHHHHHhcCCccCCCChHHHHHHHHHHHH-------
Confidence            56777 88999976433   67788888899999999999999999997   553 88999999999999975       


Q ss_pred             hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          125 HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       125 ~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      .+++++|+|||||+|||+.++++++|||++|+|+++
T Consensus       113 ~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLy  148 (628)
T TIGR03108       113 EACVERFRGMFAFALWDRNQETLFLARDRLGIKPLY  148 (628)
T ss_pred             HHHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceE
Confidence            589999999999999999999999999999999975

The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.

>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A

Probab=99.91  E-value=1.5e-24  Score=162.79  Aligned_cols=99  Identities=19%  Similarity=0.346  Sum_probs=57.0

Q ss_pred             eeEEeeCCCCCCCCCccee-ecCCcEEEEEcceecCHHHHHHHhC---C-CCCCchHHHHHHHHHHhHhcCCCchhhhhh
Q 031302           55 AALAYVPPENPNSVSQRWF-CGLHNVYCMFMGSLNNLSSLNKQYG---L-SKGSNEAMFVIEAYRTLRDRGPYPAHQVLR  129 (162)
Q Consensus        55 ~~lAys~~~~~~~~~~~~f-~~~~~i~~vFNGeIyN~~eLr~q~G---~-~ks~sE~eviieaY~~~~drGpyp~~~~l~  129 (162)
                      .+|+...+...   .||+. +..++++++|||||||+.||++++.   . .++.+|+|+++++|+++.+||    .++++
T Consensus         2 ~rl~~~~~~~~---~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~----~~~~~   74 (125)
T PF13537_consen    2 VRLSTDDSDEG---AQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWG----EDFLK   74 (125)
T ss_dssp             --------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HG----GGGGG
T ss_pred             ccccccccccc---ccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HHHHH
Confidence            35555444433   56666 6778999999999999999999983   3 378999999999999866667    58999


Q ss_pred             ccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          130 DLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       130 ~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      +|+|+|||++||+++++|++|||++|+|+++
T Consensus        75 ~l~G~fa~v~~d~~~~~l~~~rD~~G~rpLy  105 (125)
T PF13537_consen   75 RLDGPFAFVIWDKDKKRLFLARDRFGIRPLY  105 (125)
T ss_dssp             T--EEEEEEEEETTE--EEEEE-TT--S--E
T ss_pred             hCCceEEEEEEeCCCcEEEEEECCCCCCCeE
Confidence            9999999999999999999999999999975

>cd03766 Gn_AT_II_novel Gn_AT_II_novel

Probab=99.90  E-value=2.3e-23  Score=167.04  Aligned_cols=101  Identities=15%  Similarity=0.247  Sum_probs=82.3

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhCCCCCCchHHHHHHHHHHhHhcCCCchhhhh
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVL  128 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G~~ks~sE~eviieaY~~~~drGpyp~~~~l  128 (162)
                      +.||+ .+|++....   .-.||+....++++++|||||||+.+||+      ++||+|+|+++|+++++- .....+++
T Consensus        48 ~~l~~-~rL~i~~~~---~~~QP~~~~~~~~~lv~NGeIyN~~~l~~------s~sDtEvi~~l~~~~g~~-~~~i~~~~  116 (181)
T cd03766          48 LLFTS-SVLSLRGDH---VTRQPLVDQSTGNVLQWNGELYNIDGVED------EENDTEVIFELLANCSSE-SQDILDVL  116 (181)
T ss_pred             EEEEe-eEEEecCCC---CCCCCCEeCCCCEEEEECCEEECcccccC------CCCHHHHHHHHHHHHhhh-HHHHHHHH
Confidence            45565 788888853   23566776667899999999999999996      789999999999986520 00013799


Q ss_pred             hccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          129 RDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       129 ~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      ++|+|+|||||||++++++++|||++|+|++.
T Consensus       117 ~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~  148 (181)
T cd03766         117 SSIEGPFAFIYYDASENKLYFGRDCLGRRSLL  148 (181)
T ss_pred             HhcccceEEEEEeCCCCEEEEEECCCCCcCcE
Confidence            99999999999999999999999999999975

This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet

>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type

Probab=99.88  E-value=2.5e-22  Score=162.51  Aligned_cols=99  Identities=17%  Similarity=0.279  Sum_probs=84.1

Q ss_pred             eCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhC---C-CCCCchHHHHHHHHHHhHhcCCCchhh
Q 031302           51 FGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG---L-SKGSNEAMFVIEAYRTLRDRGPYPAHQ  126 (162)
Q Consensus        51 ~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G---~-~ks~sE~eviieaY~~~~drGpyp~~~  126 (162)
                      +|+ ++++.+....   -.||+....+++++++||||||+.+|+++++   . .++.||+|+|+++|++|+       .+
T Consensus        44 lgh-~rl~~~~~~~---~~qP~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~sD~e~l~~~~~~~g-------~~  112 (220)
T cd00712          44 LGH-RRLSIIDLSG---GAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTEVILHLYEEWG-------ED  112 (220)
T ss_pred             EEE-EeeeecCccc---CCCCeEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCChHHHHHHHHHHHh-------HH
Confidence            344 5566555442   3677788778999999999999999999983   3 378999999999999864       58


Q ss_pred             hhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          127 VLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       127 ~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      ++++|+|+|||++||.+++++++|||++|+|+++
T Consensus       113 ~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy  146 (220)
T cd00712         113 CLERLNGMFAFALWDKRKRRLFLARDRFGIKPLY  146 (220)
T ss_pred             HHHHhhheEEEEEEECCCCEEEEEECCCCCEeeE
Confidence            9999999999999999999999999999999975

Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.

>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type

Probab=99.80  E-value=2.9e-19  Score=145.68  Aligned_cols=108  Identities=14%  Similarity=0.183  Sum_probs=84.9

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCc
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYP  123 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp  123 (162)
                      .+-+|| .++|....... .-.||+....+++.+++||+|||+.+||+++   |+ .+++||+|+|+++|.+++..|+-+
T Consensus        65 ~~~igH-~R~at~g~~~~-~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~  142 (215)
T cd00714          65 HVGIGH-TRWATHGEPTD-VNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDL  142 (215)
T ss_pred             cEEEEE-EEccCCCCCCc-cCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCH
Confidence            466777 77777765322 2356666666789999999999999999997   55 488999999999999886544311


Q ss_pred             h---hhhhhccCccEEEEEEECCCC-eEEEEecCCCccccc
Q 031302          124 A---HQVLRDLDGSFGFVLYDCKAG-TIFAALASPLNSFVF  160 (162)
Q Consensus       124 ~---~~~l~~L~GmFAF~iyD~~~~-~lflARD~~G~k~~~  160 (162)
                      .   .+++++|+|||||+|||+.++ ++++|||   +||++
T Consensus       143 ~~ai~~~~~~l~G~fa~~~~d~~~~~~l~~~RD---~~PL~  180 (215)
T cd00714         143 LEAVKKALKRLEGAYALAVISKDEPDEIVAARN---GSPLV  180 (215)
T ss_pred             HHHHHHHHHHhccceEEEEEEeCCCCEEEEEEC---CCCcE
Confidence            1   169999999999999999875 9999999   47764

This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.

>PF13522 GATase_6: Glutamine amidotransferase domain

Probab=99.79  E-value=1.3e-18  Score=132.64  Aligned_cols=103  Identities=17%  Similarity=0.268  Sum_probs=85.4

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCch
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYPA  124 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp~  124 (162)
                      +-+|| .++|-.-....... ||.-...+++++++||+|+|+.+||+++   |+ .++.||+|+|++++++++       
T Consensus        14 ~~lgH-~R~AT~G~~~~~~~-hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li~~~g-------   84 (133)
T PF13522_consen   14 AALGH-TRYATVGSPTEENN-HPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALIHRWG-------   84 (133)
T ss_pred             EEEEE-eecCCCCCCCCcCC-CCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHH-------
Confidence            56677 67887776622123 5555566789999999999999999998   44 388999999999997654       


Q ss_pred             hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          125 HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       125 ~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      .+++++|+|+|+|++||+..++++++||+.|+++++
T Consensus        85 ~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~  120 (133)
T PF13522_consen   85 EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLY  120 (133)
T ss_pred             HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEE
Confidence            579999999999999999999999999999999874

>PRK08525 amidophosphoribosyltransferase; Provisional

Probab=99.77  E-value=2e-18  Score=155.52  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=84.7

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCC
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGP  121 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGp  121 (162)
                      .+-+|| +++|....... --.||+..  ..+++++||||+|||+.+||++|   |+ .+|+||+|||+++|.++++..+
T Consensus        66 ~~~iGH-~R~at~g~~~~-~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~~~~  143 (445)
T PRK08525         66 EIAIGH-NRYSTAGNDSI-LDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKKESL  143 (445)
T ss_pred             cEEEee-cccccCCCCCC-CCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcCCCH
Confidence            467788 78887764321 22466665  55789999999999999999997   65 4899999999999987642100


Q ss_pred             C-chhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          122 Y-PAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       122 y-p~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      . -..+++++|+|+|||+++|+  ++++++||++|+||++
T Consensus       144 ~ea~~~~~~~L~G~fa~vi~~~--~~l~~~RD~~GirPL~  181 (445)
T PRK08525        144 KDRIIEALKKIIGAYCLVLLSR--SKMFAIRDPHGVRPLS  181 (445)
T ss_pred             HHHHHHHHHhcCCceEEEEEeC--CEEEEEECCCCCCCeE
Confidence            0 01368999999999999995  7899999999999975

>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

Probab=99.76  E-value=7.9e-19  Score=159.70  Aligned_cols=101  Identities=25%  Similarity=0.303  Sum_probs=89.3

Q ss_pred             EeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhC-C-CCCCchHHHHHHHHHHhHhcCCCchhhh
Q 031302           50 NFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG-L-SKGSNEAMFVIEAYRTLRDRGPYPAHQV  127 (162)
Q Consensus        50 ~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G-~-~ks~sE~eviieaY~~~~drGpyp~~~~  127 (162)
                      .||+ -+||++...   +--||++++...++|..||||||+++||+..- + .+|.||+|+||++|++.|  |    .|+
T Consensus        44 ~l~h-eRLAIvdp~---sg~QPi~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvIi~lY~khg--~----~~~  113 (543)
T KOG0571|consen   44 ILGH-ERLAIVDPT---SGAQPIVGEDGTYVVTVNGEIYNHKKLREHCKDFEFQTGSDCEVIIHLYEKHG--G----EQA  113 (543)
T ss_pred             cccc-cceeEecCC---cCCcccccCCCcEEEEECceeccHHHHHHHhhhcccccCCCceeeeehHhhcC--c----hhH
Confidence            6777 789999974   34789999999999999999999999999873 5 377889999999999975  3    689


Q ss_pred             hhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          128 LRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       128 l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      +..|+|||||+++|.+.+++.+|||+.|++++.
T Consensus       114 ~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY  146 (543)
T KOG0571|consen  114 ICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLY  146 (543)
T ss_pred             HHHhhhheEEEEecCCCCeEEeccCCcCceeeE
Confidence            999999999999999999999999999998764

>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase)

Probab=99.73  E-value=3.9e-17  Score=128.39  Aligned_cols=111  Identities=20%  Similarity=0.294  Sum_probs=84.7

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhC----CCCCCchHHHHHHHHHHhHhcCC--
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG----LSKGSNEAMFVIEAYRTLRDRGP--  121 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G----~~ks~sE~eviieaY~~~~drGp--  121 (162)
                      .+-+|| .++|-...... ...||.....+++++++||+|+|+.+||+++.    ..++.||+|+|+++|..|++.+.  
T Consensus        69 ~~~i~H-~R~at~g~~~~-~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~  146 (220)
T cd00352          69 GVALGH-VRLATNGLPSE-ANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLF  146 (220)
T ss_pred             CEEEEE-eEeeecCCCCC-CCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHH
Confidence            344555 55555543222 33455555557999999999999999999873    25889999999999998763221  


Q ss_pred             CchhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          122 YPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       122 yp~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      .-..+++++++|.|+|+|||..+++++++||+.|.++++
T Consensus       147 ~~~~~~~~~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL~  185 (220)
T cd00352         147 EAVEDALKRLDGPFAFALWDGKPDRLFAARDRFGIRPLY  185 (220)
T ss_pred             HHHHHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeE
Confidence            001479999999999999999999999999999999874

The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format

>PRK07631 amidophosphoribosyltransferase; Provisional

Probab=99.71  E-value=3.9e-17  Score=148.88  Aligned_cols=108  Identities=15%  Similarity=0.123  Sum_probs=80.8

Q ss_pred             EEeCCceeEEeeCCCCCCCCCccee--ecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCC
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWF--CGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPY  122 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f--~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpy  122 (162)
                      +-+|| .++|-.-.... .-.||++  +..+++.+++||+|||+.+||++|   |+ .+++||+|||+++|.+++.....
T Consensus        77 ~gIGH-~RysT~G~~~~-~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~~~  154 (475)
T PRK07631         77 AAIGH-VRYATAGGGGY-ENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPTLK  154 (475)
T ss_pred             EEEEE-eeccccCCCCc-CCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHH
Confidence            55666 55555543322 2245553  445789999999999999999997   65 48999999999999986421100


Q ss_pred             -chhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          123 -PAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       123 -p~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                       -..+++++|+|+|||++||.  +++++|||+.|+||+.
T Consensus       155 eai~~~~~~l~G~yalvi~~~--~~l~aaRDp~GirPL~  191 (475)
T PRK07631        155 EQIKNALSMLKGAYAFLLMTE--TELYVALDPNGLRPLS  191 (475)
T ss_pred             HHHHHHHHhCCCCceeeEEeC--CEEEEEECCCCCCCEE
Confidence             00258999999999999996  6799999999999975

>PRK09123 amidophosphoribosyltransferase; Provisional

Probab=99.71  E-value=3.9e-17  Score=148.77  Aligned_cols=107  Identities=13%  Similarity=0.183  Sum_probs=82.3

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCC
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPY  122 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpy  122 (162)
                      +-+|| .++|....... ...||++.  ..+++++++||+|||+.+||++|   |+ .+++||+|||+++|.++.. +.+
T Consensus        88 ~~IGH-~R~sT~G~~~~-~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~-~~~  164 (479)
T PRK09123         88 RAIGH-VRYSTTGETIL-RNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRK-ASF  164 (479)
T ss_pred             EEEEE-EecccCCCCCc-CCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcc-CCH
Confidence            45677 66766664322 23466655  35789999999999999999997   54 4899999999999987541 100


Q ss_pred             c--hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          123 P--AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       123 p--~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      .  ..+++++|+|+|||++||.  ++++++||++|+||+.
T Consensus       165 ~eai~~~~~~L~G~ya~vil~~--~~l~a~RD~~GirPL~  202 (479)
T PRK09123        165 LDRFIDALRQVEGAYSLVALTN--TKLIGARDPLGIRPLV  202 (479)
T ss_pred             HHHHHHHHHHhhcceeEEEEEC--CEEEEEECCCCCCceE
Confidence            0  0468999999999999997  6899999999999974

>PRK06388 amidophosphoribosyltransferase; Provisional

Probab=99.71  E-value=8.4e-17  Score=146.60  Aligned_cols=109  Identities=10%  Similarity=0.133  Sum_probs=83.4

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCccee--ecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhH-hcC
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWF--CGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLR-DRG  120 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f--~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~-drG  120 (162)
                      .+-+|| .++|....... ...||+.  +..+++.+++||+|||+.+||++|   |+ .+|+||+|||+++|.... .+|
T Consensus        83 ~~gIGH-~RyaT~G~~~~-~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~  160 (474)
T PRK06388         83 IVGVGH-TRYSTAGSKGV-ENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYG  160 (474)
T ss_pred             cEEEee-eeeeecCCCCc-cCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCC
Confidence            467888 88888775432 2234443  345789999999999999999997   65 489999999999996432 234


Q ss_pred             CCc-hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          121 PYP-AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       121 pyp-~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      ..- ..+++++|+|+|||+|+++  ++|+++||+.|+||+.
T Consensus       161 ~~eai~~~~~~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~  199 (474)
T PRK06388        161 LKEGFERSMERLRGAYACALMIN--DRLYAIRDPNGIRPLV  199 (474)
T ss_pred             HHHHHHHHHHhccCceeEEEEEC--CEEEEEECCCCCCceE
Confidence            200 0358999999999999975  7899999999999975

>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type

Probab=99.71  E-value=9.7e-17  Score=134.16  Aligned_cols=122  Identities=14%  Similarity=0.102  Sum_probs=86.2

Q ss_pred             ChHHHHHHhhhcCCCCcEEEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCch
Q 031302           30 HPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNE  105 (162)
Q Consensus        30 ~~~~l~~~F~~~~~~~a~s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE  105 (162)
                      ...++.+.+.. .+ -.-.+-+|| +++|..-.... ...||+...  ++.+++||+|||+.+||+++   |+ ..++||
T Consensus        62 ~~~~v~~~~~~-~~-~~~~~~igH-~R~aT~g~~~~-~n~qP~~~~--~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sD  135 (249)
T cd01907          62 YPEDIARRYDL-EE-YKGYHWIAH-TRQPTNSAVWW-YGAHPFSIG--DIAVVHNGEISNYGSNREYLERFGYKFETETD  135 (249)
T ss_pred             CHHHHHhhcCc-hh-eEEEEEEEE-EeccCCCCCCc-cCCCCeecC--CEEEEeCCeecCHHHHHHHHHhcCCCCCCCCH
Confidence            45556554432 11 123466777 66665433222 234565543  89999999999999999987   54 488999


Q ss_pred             HHHHHHHHHHhH-hcCCCchh----------------------hhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          106 AMFVIEAYRTLR-DRGPYPAH----------------------QVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       106 ~eviieaY~~~~-drGpyp~~----------------------~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      +|+|+++|+.+. .+|. |.+                      .++++|+|+|||+++|.  +.++++||++|+||+.
T Consensus       136 sEvi~~ll~~~~~~~g~-~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~  210 (249)
T cd01907         136 TEVIAYYLDLLLRKGGL-PLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAV  210 (249)
T ss_pred             HHHHHHHHHHHHHhCCC-hHHHHHHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEE
Confidence            999999987543 2342 212                      47899999999999996  4589999999999975

GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed

Probab=99.70  E-value=5.4e-17  Score=148.75  Aligned_cols=108  Identities=16%  Similarity=0.192  Sum_probs=84.5

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCc
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYP  123 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp  123 (162)
                      .+-+|| .++|....... ...||+....+++.+++||+|||+.+||+++   |+ .+++||+|||+++|.++.+.|.-+
T Consensus        66 ~~~igH-~R~at~g~~~~-~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~  143 (604)
T PRK00331         66 TTGIGH-TRWATHGKPTE-RNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDL  143 (604)
T ss_pred             cEEEEE-EecCCCCCCcc-ccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCH
Confidence            455677 66777664322 3356666666899999999999999999998   55 488999999999999876555211


Q ss_pred             h---hhhhhccCccEEEEEEECCC-CeEEEEecCCCccccc
Q 031302          124 A---HQVLRDLDGSFGFVLYDCKA-GTIFAALASPLNSFVF  160 (162)
Q Consensus       124 ~---~~~l~~L~GmFAF~iyD~~~-~~lflARD~~G~k~~~  160 (162)
                      .   .+++++|+|+|||+|||+.+ +++++|||.   ||++
T Consensus       144 ~~a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~  181 (604)
T PRK00331        144 LEAVRKALKRLEGAYALAVIDKDEPDTIVAARNG---SPLV  181 (604)
T ss_pred             HHHHHHHHHhccCeeEEEEEecCCCCEEEEEECC---CceE
Confidence            1   35899999999999999997 999999995   6653

>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

Probab=99.69  E-value=8.3e-17  Score=147.60  Aligned_cols=108  Identities=13%  Similarity=0.182  Sum_probs=83.4

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCc
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYP  123 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp  123 (162)
                      .+-+|| .++|....... .-.||+....+++.+++||+||||.+||+++   |+ .+++||+|||+++|.++++.|+-+
T Consensus        65 ~~~igH-~R~at~g~~~~-~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~  142 (607)
T TIGR01135        65 GVGIGH-TRWATHGKPTE-ENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDL  142 (607)
T ss_pred             cEEEEE-eeccCCCCCCc-cCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCH
Confidence            456777 77777764322 2356666666789999999999999999998   55 488999999999999887544211


Q ss_pred             h---hhhhhccCccEEEEEEECCC-CeEEEEecCCCccccc
Q 031302          124 A---HQVLRDLDGSFGFVLYDCKA-GTIFAALASPLNSFVF  160 (162)
Q Consensus       124 ~---~~~l~~L~GmFAF~iyD~~~-~~lflARD~~G~k~~~  160 (162)
                      .   .+++++|+|||||+|||+.+ ++++++||.   ||++
T Consensus       143 ~~ai~~~~~~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~  180 (607)
T TIGR01135       143 LEAVQKALKQLRGAYALAVLHADHPETLVAARSG---SPLI  180 (607)
T ss_pred             HHHHHHHHHHhcCceEEEEEecCCCCEEEEEECC---CceE
Confidence            1   26899999999999999887 469999994   6653

The member from Methanococcus jannaschii contains an intein.

>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type

Probab=99.69  E-value=1.8e-16  Score=131.63  Aligned_cols=109  Identities=13%  Similarity=0.198  Sum_probs=82.4

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcC-
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRG-  120 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drG-  120 (162)
                      .+-+|| .++|....... ...||+..  ..+++++++||+|||+.+||+++   |. .+++||+|+|+++|..+++.+ 
T Consensus        65 ~~~lgH-~R~at~g~~~~-~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~  142 (252)
T cd00715          65 NIAIGH-VRYSTAGSSSL-ENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDD  142 (252)
T ss_pred             cEEEEE-EEcccCCCCCc-cCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCC
Confidence            356677 66666654332 23455554  34689999999999999999997   33 378899999999999875321 


Q ss_pred             CCch-hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          121 PYPA-HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       121 pyp~-~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      +.-+ .+++++|+|+|||++||.  ++|+++||+.|+|+++
T Consensus       143 ~~~al~~~~~~l~G~~a~~~~d~--~~l~~~RD~~G~~PL~  181 (252)
T cd00715         143 LFEAIIDALERVKGAYSLVIMTA--DGLIAVRDPHGIRPLV  181 (252)
T ss_pred             HHHHHHHHHHhccCceEEEEEEC--CEEEEEECCCCCCCeE
Confidence            0000 258999999999999998  9999999999999864

This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.

>PRK07349 amidophosphoribosyltransferase; Provisional

Probab=99.69  E-value=1.5e-16  Score=145.94  Aligned_cols=108  Identities=13%  Similarity=0.100  Sum_probs=82.1

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceeec--CCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCC
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFCG--LHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPY  122 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~~--~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpy  122 (162)
                      +-+|| .++|.+-.... ...||+...  .+++.+++||+|||+.+||++|   |+ .+++||+|||+++|..+.+.|.-
T Consensus       100 i~IGH-vRysT~G~~~~-~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~  177 (500)
T PRK07349        100 LAVGH-TRYSTTGSSRK-ANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKD  177 (500)
T ss_pred             EEEEE-eecccCCCCCc-cCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCC
Confidence            56677 66666654322 235666543  4789999999999999999997   55 48999999999999864433311


Q ss_pred             ch---hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          123 PA---HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       123 p~---~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      +.   .+++++|+|+|||+|.|.  ++|+++||++|+||++
T Consensus       178 ~~eai~~~~~~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~  216 (500)
T PRK07349        178 WLEAAISAFQRCQGAFSLVIGTP--EGLMGVRDPNGIRPLV  216 (500)
T ss_pred             HHHHHHHHHHHhhhhEEEEEEeC--CEEEEEECCCCCCCeE
Confidence            11   358899999999999875  6799999999999964

>PRK08341 amidophosphoribosyltransferase; Provisional

Probab=99.68  E-value=2.3e-16  Score=142.61  Aligned_cols=107  Identities=14%  Similarity=0.184  Sum_probs=79.7

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceeec--CCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHH-hHhcC
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFCG--LHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRT-LRDRG  120 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~~--~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~-~~drG  120 (162)
                      .+.+|| .++|......+   .||+...  .+++.+++||+|||+.+||++|   |+ .+|+||+|||++++.. +.++|
T Consensus        67 ~~~IGH-~R~sT~G~~~~---~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~  142 (442)
T PRK08341         67 NLAIGH-VRYSTSGSLSE---VQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETG  142 (442)
T ss_pred             CEEEEE-eeccccCCCcC---cCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcC
Confidence            366777 77777664333   4554443  4689999999999999999997   55 4889999999776432 22334


Q ss_pred             CC--chhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          121 PY--PAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       121 py--p~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      ..  -..+++++|+|+|||+|.+.  ++++++||+.|+||+.
T Consensus       143 ~~~~ai~~~~~~l~G~yal~i~~~--~~l~a~RD~~GirPL~  182 (442)
T PRK08341        143 DEFEAMREVFNEVKGAYSVAILFD--GKIIVARDPVGFRPLS  182 (442)
T ss_pred             CHHHHHHHHHHhccCceEEEEEEC--CEEEEEEcCCCceEEE
Confidence            21  01247899999999999986  7899999999999974

>PRK07272 amidophosphoribosyltransferase; Provisional

Probab=99.68  E-value=1.9e-16  Score=144.76  Aligned_cols=108  Identities=18%  Similarity=0.212  Sum_probs=82.4

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCC
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGP  121 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGp  121 (162)
                      .+-+|| .++|..-.... -..||+..  ..+++.+++||+|||+.+||+++   |+ .+|+||+|||+++|.++.. +.
T Consensus        77 ~~~IGH-~RysT~G~~~~-~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~-~~  153 (484)
T PRK07272         77 QAAIGH-VRYATAGSASI-ENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHN-PT  153 (484)
T ss_pred             cEEEEE-eeccccCCCCc-CCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcC-CC
Confidence            356677 66666654321 22566654  45789999999999999999997   65 4899999999999987531 10


Q ss_pred             C--chhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          122 Y--PAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       122 y--p~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      .  -..+++++|+|+|||+|+|.  ++|+++||+.|+||+.
T Consensus       154 ~~eai~~~~~~l~G~ya~~i~~~--~~l~a~RDp~GirPL~  192 (484)
T PRK07272        154 FMGKLKEALNTVKGGFAYLLLTE--DKLIAALDPNGFRPLS  192 (484)
T ss_pred             HHHHHHHHHHHccCceeEEEEEC--CEEEEEECCCCCCcEE
Confidence            0  01368999999999999996  6899999999999974

>PRK07847 amidophosphoribosyltransferase; Provisional

Probab=99.67  E-value=2.1e-16  Score=145.19  Aligned_cols=108  Identities=19%  Similarity=0.173  Sum_probs=81.2

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceeec---CCcEEEEEcceecCHHHHHHHh---CC------CCCCchHHHHHHHHHHh
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFCG---LHNVYCMFMGSLNNLSSLNKQY---GL------SKGSNEAMFVIEAYRTL  116 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~~---~~~i~~vFNGeIyN~~eLr~q~---G~------~ks~sE~eviieaY~~~  116 (162)
                      +-+|| .++|.+..... ...||+...   .+++.+++||+|||+.+||+++   |.      .+++||+|||++++..+
T Consensus        90 i~IGH-vR~sT~G~~~~-~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~  167 (510)
T PRK07847         90 VAIGH-CRYSTTGASTW-ENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHG  167 (510)
T ss_pred             EEEEe-ccCCcCCCCcc-cCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHh
Confidence            44666 55555443321 224555532   5789999999999999999997   54      58999999999999876


Q ss_pred             HhcCCCc--hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          117 RDRGPYP--AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       117 ~drGpyp--~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      .+.|...  ..+++++|+|+|||++||.  ++|+++||++|+||+.
T Consensus       168 ~~~~~~~eai~~~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~  211 (510)
T PRK07847        168 AADSTLEQAALELLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLV  211 (510)
T ss_pred             ccCCCHHHHHHHHHHHhhhheEEEEEEC--CEEEEEECCCCCCCcE
Confidence            5322110  0258999999999999996  6899999999999974

>PRK06781 amidophosphoribosyltransferase; Provisional

Probab=99.65  E-value=9.6e-16  Score=139.54  Aligned_cols=106  Identities=15%  Similarity=0.181  Sum_probs=80.1

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCC
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPY  122 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpy  122 (162)
                      +-+|| .++|-+-.... ...||++.  ..+++.+++||+|||+.+||++|   |. .+++||+|||+++|..+.. + -
T Consensus        77 ~~IGH-vRyaT~G~~~~-~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~-~-~  152 (471)
T PRK06781         77 SAIGH-VRYATAGGSEV-ANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTK-D-S  152 (471)
T ss_pred             EEEEE-eEcccCCCCCc-CCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcC-C-C
Confidence            45566 55555554322 22455532  35689999999999999999997   54 4899999999999987542 1 0


Q ss_pred             c---hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          123 P---AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       123 p---~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      +   ..+++++|+|+|||+++|.  +++++|||+.|+||++
T Consensus       153 ~~eai~~~~~~l~G~ya~vi~~~--~~l~aaRD~~GirPL~  191 (471)
T PRK06781        153 LIESVKEALNKVKGAFAYLLLTG--NEMIVALDPNGFRPLS  191 (471)
T ss_pred             HHHHHHHHHHhCCCcEEEEEEEC--CEEEEEECCCCCCCeE
Confidence            1   0357899999999999995  7899999999999975

>PLN02440 amidophosphoribosyltransferase

Probab=99.64  E-value=1.1e-15  Score=139.01  Aligned_cols=104  Identities=13%  Similarity=0.160  Sum_probs=79.8

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhH-----
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLR-----  117 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~-----  117 (162)
                      +-+|| .++|-+..... .-.||+..  ..+++++++||+|+|+.+||++|   |. .+++||+|+|+++|.++.     
T Consensus        67 ~~IGH-vRysT~G~~~~-~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~  144 (479)
T PLN02440         67 IAIGH-VRYSTAGASSL-KNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFF  144 (479)
T ss_pred             EEEEE-EeccccCCCCc-cCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHH
Confidence            45666 55555543222 23556554  34679999999999999999997   44 489999999999997652     


Q ss_pred             hcCCCchhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          118 DRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       118 drGpyp~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      +++    .+++++|+|+|||++||+  ++|+++||+.|+||+.
T Consensus       145 ~a~----~~~~~~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~  181 (479)
T PLN02440        145 SRI----VDACEKLKGAYSMVFLTE--DKLVAVRDPHGFRPLV  181 (479)
T ss_pred             HHH----HHHHHHhccceeeeEEEC--CEEEEEECCCCCCceE
Confidence            122    479999999999999996  4699999999999975

>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=99.63  E-value=1e-15  Score=142.08  Aligned_cols=108  Identities=12%  Similarity=0.195  Sum_probs=82.7

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCc
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYP  123 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp  123 (162)
                      .+-+|| .++|..-.... .-.||+....+++.+|+||+|||+.+||+++   |+ .+++||+|||+++|..+.++|.-+
T Consensus        96 ~~~igH-~R~at~g~~~~-~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~  173 (640)
T PTZ00295         96 TIGIAH-TRWATHGGKTD-ENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDF  173 (640)
T ss_pred             cEEEEE-eccccCCCCCc-CCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCH
Confidence            466777 77887754322 2245555555799999999999999999997   65 489999999999987554455211


Q ss_pred             ---hhhhhhccCccEEEEEEECC-CCeEEEEecCCCccccc
Q 031302          124 ---AHQVLRDLDGSFGFVLYDCK-AGTIFAALASPLNSFVF  160 (162)
Q Consensus       124 ---~~~~l~~L~GmFAF~iyD~~-~~~lflARD~~G~k~~~  160 (162)
                         ..+++++|+|+|||++||+. .++++++||+   ||++
T Consensus       174 ~~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~  211 (640)
T PTZ00295        174 QEAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPLL  211 (640)
T ss_pred             HHHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---CceE
Confidence               12589999999999999987 5899999996   6653

>PRK05793 amidophosphoribosyltransferase; Provisional

Probab=99.62  E-value=1.7e-15  Score=137.50  Aligned_cols=108  Identities=11%  Similarity=0.136  Sum_probs=81.1

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCC
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPY  122 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpy  122 (162)
                      +-+|| .++|.+-.... ...||...  ..+++.+++||+|||+.+||+++   |+ .+++||+|+|++++.++...++.
T Consensus        82 ~~iGH-vR~sT~G~~~~-~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~  159 (469)
T PRK05793         82 SAIGH-VRYSTTGASDL-DNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLE  159 (469)
T ss_pred             EEEEE-eecccCCCCCC-CCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHH
Confidence            55666 55555543222 22455554  35789999999999999999997   54 48899999999999876432210


Q ss_pred             c-hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          123 P-AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       123 p-~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      - -.+++++|+|+|||+++|.  ++++++||+.|+||+.
T Consensus       160 ~ai~~~~~~l~G~ya~vi~~~--~~l~a~RD~~GirPL~  196 (469)
T PRK05793        160 KALVDAIQAIKGSYALVILTE--DKLIGVRDPHGIRPLC  196 (469)
T ss_pred             HHHHHHHHHhhhhceEEEEEC--CEEEEEECCCCCCCcE
Confidence            0 0258999999999999986  7899999999999974

>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=99.60  E-value=4.7e-15  Score=139.37  Aligned_cols=104  Identities=12%  Similarity=0.103  Sum_probs=78.1

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHH-hHhcCCC
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRT-LRDRGPY  122 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~-~~drGpy  122 (162)
                      .+-+|| .++|....... -..||+....+++.+|+||+||||.+||++|   |+ .+|+||+|||+++.+. |.+||..
T Consensus        98 ~~~igH-~R~at~g~~~~-~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~~  175 (670)
T PTZ00394         98 HVGIAH-TRWATHGGVCE-RNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIH  175 (670)
T ss_pred             CEEEEE-eeceecCCCCc-CCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCCC
Confidence            367787 88888775322 2245666667899999999999999999997   66 4899999999976432 2224521


Q ss_pred             ch----hhhhhccCccEEEEEEEC-CCCeEEEEecC
Q 031302          123 PA----HQVLRDLDGSFGFVLYDC-KAGTIFAALAS  153 (162)
Q Consensus       123 p~----~~~l~~L~GmFAF~iyD~-~~~~lflARD~  153 (162)
                      ..    .+++++|+|||||++.+. ..+++++|||+
T Consensus       176 ~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~  211 (670)
T PTZ00394        176 NFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG  211 (670)
T ss_pred             CHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC
Confidence            11    269999999999999965 45899999998

>PRK09246 amidophosphoribosyltransferase; Provisional

Probab=99.58  E-value=7.4e-15  Score=134.18  Aligned_cols=108  Identities=13%  Similarity=0.177  Sum_probs=77.5

Q ss_pred             EeCCceeEEeeCCCCCCCCCccee-ecCCcEEEEEcceecCHHHHHHHh----C-CCCCCchHHHHHHHHHHhHhc--CC
Q 031302           50 NFGNAAALAYVPPENPNSVSQRWF-CGLHNVYCMFMGSLNNLSSLNKQY----G-LSKGSNEAMFVIEAYRTLRDR--GP  121 (162)
Q Consensus        50 ~~g~~~~lAys~~~~~~~~~~~~f-~~~~~i~~vFNGeIyN~~eLr~q~----G-~~ks~sE~eviieaY~~~~dr--Gp  121 (162)
                      -+|| .++|.+-.... ...||+. ...+++.+++||+|||+.+||+++    | ..+++||+|||+++|.++...  |.
T Consensus        68 ~IGH-vRysT~G~~~~-~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~  145 (501)
T PRK09246         68 GIGH-VRYPTAGSSSS-AEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGL  145 (501)
T ss_pred             EEEE-EcCCcCCCCCc-ccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhcccc
Confidence            4555 44444443222 2245554 444569999999999999999987    2 248999999999999876432  20


Q ss_pred             --Cch------hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          122 --YPA------HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       122 --yp~------~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                        -+.      .+++++|+|+|||++|.. .++++++||++|+||+.
T Consensus       146 ~~~~~~l~eai~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~  191 (501)
T PRK09246        146 PLTPEDIFAAVAAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLV  191 (501)
T ss_pred             ccCccCHHHHHHHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeE
Confidence              011      158999999999999843 45699999999999975

>TIGR01134 purF amidophosphoribosyltransferase

Probab=99.56  E-value=2.5e-14  Score=128.91  Aligned_cols=108  Identities=13%  Similarity=0.140  Sum_probs=79.6

Q ss_pred             EEeCCceeEEeeCCCCCCCCCccee-ecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCc
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWF-CGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYP  123 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f-~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp  123 (162)
                      +-+|| .++|-+-.... ...||+. ...+++.+++||+|+|+.+||+++   |. .++.||+|+|+++|..++..+.-.
T Consensus        67 ~~IgH-vR~aT~G~~~~-~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~  144 (442)
T TIGR01134        67 VGIGH-VRYSTAGSSSL-SNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDL  144 (442)
T ss_pred             EEEEE-EEecCCCCCCc-cCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCH
Confidence            55666 55655554222 2245555 333469999999999999999997   44 488999999999998864111000


Q ss_pred             h---hhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          124 A---HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       124 ~---~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      .   .+++++|+|+|||++||.  ++++++||+.|+|++.
T Consensus       145 ~~ai~~~~~~l~G~falvi~~~--~~L~a~RD~~G~rPL~  182 (442)
T TIGR01134       145 FEAIARVLKRVRGAYALVIMIG--DGLIAVRDPHGIRPLV  182 (442)
T ss_pred             HHHHHHHHHHhCccceEEEEEC--CEEEEEECCCCCCCcE
Confidence            0   358999999999999974  6899999999999874

Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.

>PLN02981 glucosamine:fructose-6-phosphate aminotransferase

Probab=99.52  E-value=5e-14  Score=132.50  Aligned_cols=102  Identities=13%  Similarity=0.199  Sum_probs=73.7

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceee-cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHH-hHhcCCC
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFC-GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRT-LRDRGPY  122 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~-~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~-~~drGpy  122 (162)
                      +-+|| .++|-.-.... -..||+.. ..+++.+|+||+||||.+||++|   |+ .+|+||+|||+++.+. +..+|+.
T Consensus        88 ~~IGH-~R~at~g~~~~-~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~  165 (680)
T PLN02981         88 AGIAH-TRWATHGPPAP-RNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEE  165 (680)
T ss_pred             EEEEE-cccccCCCCCc-CCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccc
Confidence            55666 66666553211 11344443 34689999999999999999997   66 4899999999998332 2234431


Q ss_pred             ----ch----hhhhhccCccEEEEEEECCC-CeEEEEec
Q 031302          123 ----PA----HQVLRDLDGSFGFVLYDCKA-GTIFAALA  152 (162)
Q Consensus       123 ----p~----~~~l~~L~GmFAF~iyD~~~-~~lflARD  152 (162)
                          ..    .+++++|+|+|||+|.++.. +++++|||
T Consensus       166 ~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~  204 (680)
T PLN02981        166 EGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKR  204 (680)
T ss_pred             cCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEec
Confidence                00    14899999999999999775 99999999

>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]

Probab=99.11  E-value=2.5e-10  Score=107.24  Aligned_cols=117  Identities=15%  Similarity=0.215  Sum_probs=82.5

Q ss_pred             ChHHHHHHhhhcCCCCcEEEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCch
Q 031302           30 HPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNE  105 (162)
Q Consensus        30 ~~~~l~~~F~~~~~~~a~s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE  105 (162)
                      +-.++ +.-....| -.-.+-+|| .++| +|-..+.-.-+|.++  +++.+|.||-|.||.+||++|   |+ .+|+||
T Consensus        51 kv~~l-~~~~~~~~-~~~~~gIgH-TRWA-THG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TD  124 (597)
T COG0449          51 KISNL-EELLNKEP-LIGGVGIAH-TRWA-THGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTD  124 (597)
T ss_pred             CHHHH-Hhhhcccc-cCCceeeee-cccc-CCCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCc
Confidence            34444 33333333 234566677 6666 333322223344444  899999999999999999998   77 499999


Q ss_pred             HHHHHHHHHHhHhcCCCch-hhhhhccCccEEEEEEECCC-CeEEEEec
Q 031302          106 AMFVIEAYRTLRDRGPYPA-HQVLRDLDGSFGFVLYDCKA-GTIFAALA  152 (162)
Q Consensus       106 ~eviieaY~~~~drGpyp~-~~~l~~L~GmFAF~iyD~~~-~~lflARD  152 (162)
                      ||||.++.+..-+.|..-+ ..++++|+|.||+++-|+.. +++++||-
T Consensus       125 TEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~ar~  173 (597)
T COG0449         125 TEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAARK  173 (597)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEecCCCCeEEEEcC
Confidence            9999999976543332111 35899999999999999997 79999985

>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]

Probab=98.91  E-value=6.1e-09  Score=95.57  Aligned_cols=108  Identities=14%  Similarity=0.236  Sum_probs=79.9

Q ss_pred             EEEeCCceeEEeeCCCCC-CCCCcceeecCC--cEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHh-c
Q 031302           48 SINFGNAAALAYVPPENP-NSVSQRWFCGLH--NVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRD-R  119 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~-~~~~~~~f~~~~--~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~d-r  119 (162)
                      ++-+||   .-|+-...+ ....||.+....  .+.+++||.|-|..+||++|   |. ..|++|+|||++++..-.+ .
T Consensus        72 ~~~IGH---vRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~  148 (470)
T COG0034          72 NVGIGH---VRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDED  148 (470)
T ss_pred             cceeeE---eeecCCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccc
Confidence            445565   566655533 133466666544  58999999999999999997   55 4889999999999985332 1


Q ss_pred             CCCc-hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          120 GPYP-AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       120 Gpyp-~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      +... ..+++++++|-||+++-.+.  .|+++||+.|+||+.
T Consensus       149 ~~~~a~~~~~~~v~G~ys~v~~~~~--~lia~RDP~GiRPL~  188 (470)
T COG0034         149 DIFEAVKEVLRRVKGAYALVALIKD--GLIAVRDPNGIRPLV  188 (470)
T ss_pred             cHHHHHHHHHhhcCCcEEEEEEECC--eEEEEECCCCCccce
Confidence            1110 13577899999999999764  999999999999974

>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]

Probab=98.49  E-value=2.4e-07  Score=85.55  Aligned_cols=77  Identities=16%  Similarity=0.305  Sum_probs=60.3

Q ss_pred             ecCCcEEEEEcceecCHHHHHHHhCCCCCCchHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECCCCeEEEEecC
Q 031302           74 CGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAALAS  153 (162)
Q Consensus        74 ~~~~~i~~vFNGeIyN~~eLr~q~G~~ks~sE~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~~~~lflARD~  153 (162)
                      .++++++..|||||||-.       .+.+..|+..|.+....+++-|-  -.+.++.++|-|||++||.++++||..||+
T Consensus        66 v~d~~~vfl~NGeIyn~~-------~s~~~~d~~~l~~~l~~~~e~~~--Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~  136 (520)
T KOG0573|consen   66 VEDDRYVFLFNGEIYNGE-------KSDTLFDTDILAEELSNLKESGD--ILDIIKSLQGPWAFIYYDVRSDKLYFGRDD  136 (520)
T ss_pred             ecccceEEEecceeccCC-------CccccchHHHHHHHHhcCCcccc--HHHHHHhccCCceEEEEEccCcEEEEeccc
Confidence            344568999999999943       24556688878887777653331  245778899999999999999999999999


Q ss_pred             CCcccc
Q 031302          154 PLNSFV  159 (162)
Q Consensus       154 ~G~k~~  159 (162)
                      +|++-+
T Consensus       137 ~GRrSL  142 (520)
T KOG0573|consen  137 IGRRSL  142 (520)
T ss_pred             ccceee
Confidence            999854

>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type

Probab=98.43  E-value=2.5e-06  Score=77.54  Aligned_cols=79  Identities=15%  Similarity=0.176  Sum_probs=60.6

Q ss_pred             EEEEcceecCHHHHHHHh------------C---------CCCCCchHHHHHHHHHHhHhcCCCchh-------------
Q 031302           80 YCMFMGSLNNLSSLNKQY------------G---------LSKGSNEAMFVIEAYRTLRDRGPYPAH-------------  125 (162)
Q Consensus        80 ~~vFNGeIyN~~eLr~q~------------G---------~~ks~sE~eviieaY~~~~drGpyp~~-------------  125 (162)
                      +++.||||+|+..+|+.+            |         ...+.||++++.++.+.+-..|....+             
T Consensus       226 ~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ld~~le~l~~~g~~l~~A~~mliPeaw~~~  305 (413)
T cd00713         226 YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRSGRSLPEAMMMLIPEAWQNN  305 (413)
T ss_pred             eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHhCChhhccC
Confidence            589999999999998764            1         124689999898888766544532222             


Q ss_pred             ---------------hhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          126 ---------------QVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       126 ---------------~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                                     .+.+.++|-||+++-|.  +.+.++|||.|.||+.
T Consensus       306 ~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRPl~  353 (413)
T cd00713         306 PTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRPAR  353 (413)
T ss_pred             ccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcceE
Confidence                           23477999999999985  7899999999999863

GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.

>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]

Probab=98.34  E-value=3.2e-06  Score=77.16  Aligned_cols=107  Identities=21%  Similarity=0.324  Sum_probs=74.7

Q ss_pred             EEEeCCceeEEeeCCCCCC-CCCcceeec--CCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHH-----
Q 031302           48 SINFGNAAALAYVPPENPN-SVSQRWFCG--LHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRT-----  115 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~-~~~~~~f~~--~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~-----  115 (162)
                      +|-+||   +-|+-...+- .-.||....  .+.+.+..||++-|+++||+++   |. -.|+||+|+|++.+..     
T Consensus        69 ~~gIGH---~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~  145 (474)
T KOG0572|consen   69 SIGIGH---TRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDV  145 (474)
T ss_pred             ceeeee---eecccccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhh
Confidence            455555   6777554331 334665443  4568999999999999999997   54 3778888888887642     


Q ss_pred             hHhcCC-Cch--hhhhhccCccEEEEEEECCCCeEEEEecCCCcccc
Q 031302          116 LRDRGP-YPA--HQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFV  159 (162)
Q Consensus       116 ~~drGp-yp~--~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~  159 (162)
                      +|..+| +++  .++.++++|.|+.++-=.  +.|++.||++|+||+
T Consensus       146 ~~~~~~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL  190 (474)
T KOG0572|consen  146 YRVDAPDWFARIRDVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPL  190 (474)
T ss_pred             hcccCccHHHHHHHHHHhcCCceeEEEEEc--cEEEEEecCCCCccc
Confidence            121222 111  247889999999888743  559999999999986

>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type

Probab=98.26  E-value=3.6e-06  Score=70.28  Aligned_cols=82  Identities=20%  Similarity=0.261  Sum_probs=60.6

Q ss_pred             CcceeecCCcEEEEEcceecCHHHHHHHh---C--CCCCCchHHHHHHHHHHhHh-cCCC------ch-hhhhhccC---
Q 031302           69 SQRWFCGLHNVYCMFMGSLNNLSSLNKQY---G--LSKGSNEAMFVIEAYRTLRD-RGPY------PA-HQVLRDLD---  132 (162)
Q Consensus        69 ~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G--~~ks~sE~eviieaY~~~~d-rGpy------p~-~~~l~~L~---  132 (162)
                      .||...  ++++++.||.|+|+.+||+.+   |  ..+++||+|++.++.....+ .++-      .+ .+.+++|+   
T Consensus       100 ~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~~~~~~al~~~~~~l~~~~  177 (257)
T cd01908         100 CHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPAELLDAILQTLRELAALA  177 (257)
T ss_pred             CCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhC
Confidence            444444  389999999999999999886   3  24788899988888765432 2221      01 34777888   


Q ss_pred             --ccEEEEEEECCCCeEEEEecCC
Q 031302          133 --GSFGFVLYDCKAGTIFAALASP  154 (162)
Q Consensus       133 --GmFAF~iyD~~~~~lflARD~~  154 (162)
                        |.++|++-|.  .+++++||+.
T Consensus       178 ~~~~~n~~~~dg--~~l~a~r~~~  199 (257)
T cd01908         178 PPGRLNLLLSDG--EYLIATRYAS  199 (257)
T ss_pred             cCeEEEEEEECC--CEEEEEEeCC
Confidence              7899999886  7799999986

YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group

Probab=97.96  E-value=8.1e-05  Score=66.44  Aligned_cols=118  Identities=16%  Similarity=0.183  Sum_probs=71.1

Q ss_pred             CChHHHHHHhhhcCCCCcEE--EEeCCceeEEeeCCCCC-CCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CC
Q 031302           29 KHPEEIFNEFLISQSSNAFS--INFGNAAALAYVPPENP-NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SK  101 (162)
Q Consensus        29 ~~~~~l~~~F~~~~~~~a~s--~~~g~~~~lAys~~~~~-~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~k  101 (162)
                      ..+++|.+-|....- ..+.  +.+||   .-|+-...+ ...-||..      +++-||||.|+..+|+.+   +. .+
T Consensus       176 ~~~~~l~~~y~Dl~~-~~~~s~~~i~H---~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~  245 (361)
T PF00310_consen  176 GTPEQLAEFYPDLQD-EDFKSHFAIGH---QRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLN  245 (361)
T ss_dssp             C-GGGHHHHCCGGGC-TTEEBSEEEEE---EEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBS
T ss_pred             cCHHHHHHHHHhhcc-ccccceEEEEE---EecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhccccc
Confidence            466777777755322 2222  22233   334432221 13344444      899999999999999875   32 23


Q ss_pred             C----------------CchHHHHHHHHHHhHhcCCCch-----------------------------hhhhhccCccEE
Q 031302          102 G----------------SNEAMFVIEAYRTLRDRGPYPA-----------------------------HQVLRDLDGSFG  136 (162)
Q Consensus       102 s----------------~sE~eviieaY~~~~drGpyp~-----------------------------~~~l~~L~GmFA  136 (162)
                      +                .||++++.++.+.+-.+| ++.                             ..+.+.++|-||
T Consensus       246 ~~~~~~~~~~~pi~~~~~SDS~~l~~~le~l~~~g-~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaa  324 (361)
T PF00310_consen  246 SPLFGDLKELLPIVNPGGSDSEVLDNLLELLLRRG-RSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAA  324 (361)
T ss_dssp             STTCGHHHCC-SSS-TTS-HHHHHHHHHHHHHHTT-SSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEE
T ss_pred             CccccchhhcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceE
Confidence            3                899999989888877777 111                             124677999999


Q ss_pred             EEEEECCCCeEEEEecCCCcccc
Q 031302          137 FVLYDCKAGTIFAALASPLNSFV  159 (162)
Q Consensus       137 F~iyD~~~~~lflARD~~G~k~~  159 (162)
                      +++-|..  .++++|||.|.||.
T Consensus       325 i~~~~g~--~~~a~~Dr~GLRP~  345 (361)
T PF00310_consen  325 IIFTDGN--GVGAFLDRNGLRPL  345 (361)
T ss_dssp             EEEECSS--EEEEEE-TT--S--
T ss_pred             EEEEeCC--EEEEEECCCCCcce
Confidence            9998764  59999999999986

This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....

>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]

Probab=97.85  E-value=1.2e-05  Score=75.84  Aligned_cols=85  Identities=19%  Similarity=0.360  Sum_probs=63.8

Q ss_pred             CcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCC------chhhhhhccCccEEEE
Q 031302           69 SQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPY------PAHQVLRDLDGSFGFV  138 (162)
Q Consensus        69 ~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpy------p~~~~l~~L~GmFAF~  138 (162)
                      ||-.....+..++|.||-|-||++||+-+   |+ ..++||+|+|-++|...-|.-|.      -.++++++|+|-||++
T Consensus       100 HP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~F~~lv~~v~k~lEGaFalv  179 (670)
T KOG1268|consen  100 HPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGLL  179 (670)
T ss_pred             CCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCcccHHHHHHHHHHHhhhHHHHH
Confidence            45455666788899999999999999886   77 47789999898988866443330      0478999999999998


Q ss_pred             EEECC-CCeEEEEecC
Q 031302          139 LYDCK-AGTIFAALAS  153 (162)
Q Consensus       139 iyD~~-~~~lflARD~  153 (162)
                      +=-+. -+++.+.|+.
T Consensus       180 fkS~hfP~e~Va~Rrg  195 (670)
T KOG1268|consen  180 FKSSHFPGEVVAARKG  195 (670)
T ss_pred             HHhhcCCcceeeeccC
Confidence            74332 3677777763

>TIGR03442 conserved hypothetical protein TIGR03442

Probab=97.46  E-value=0.00041  Score=58.66  Aligned_cols=82  Identities=15%  Similarity=0.138  Sum_probs=58.7

Q ss_pred             CcceeecCCcEEEEEcceecCHH-----HHHHHh---CC--CCCCchHHHHHHHHHHhH-hcCCCch----hhhhhccCc
Q 031302           69 SQRWFCGLHNVYCMFMGSLNNLS-----SLNKQY---GL--SKGSNEAMFVIEAYRTLR-DRGPYPA----HQVLRDLDG  133 (162)
Q Consensus        69 ~~~~f~~~~~i~~vFNGeIyN~~-----eLr~q~---G~--~ks~sE~eviieaY~~~~-drGpyp~----~~~l~~L~G  133 (162)
                      .||...  +++.++.||.|-|+.     +||+++   |+  .+++||+|++.+++.... +..|...    .++++.|.|
T Consensus       103 ~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~~~~~~ai~~~~~~l~~  180 (251)
T TIGR03442       103 CAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRLLENDPRALEEALAEVLLILFS  180 (251)
T ss_pred             CCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Confidence            445443  689999999999998     566655   32  478889998888887653 3222221    246677787


Q ss_pred             c-------EEEEEEECCCCeEEEEecCC
Q 031302          134 S-------FGFVLYDCKAGTIFAALASP  154 (162)
Q Consensus       134 m-------FAF~iyD~~~~~lflARD~~  154 (162)
                      .       |.|++=|.  .+|++.||+.
T Consensus       181 ~~~~~~~~~n~~~sdg--~~l~a~R~~~  206 (251)
T TIGR03442       181 AAAAPRVRLNLLLTDG--SRLVATRWAD  206 (251)
T ss_pred             HhhCcccceEEEEEcC--CEEEEEEeCC
Confidence            7       99999984  8888889975

Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).

>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices

Probab=95.98  E-value=0.036  Score=46.50  Aligned_cols=80  Identities=24%  Similarity=0.255  Sum_probs=55.4

Q ss_pred             cceeecCCcEEEEEcceecCHHHHHHHhCC----CCCCchHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECCCC
Q 031302           70 QRWFCGLHNVYCMFMGSLNNLSSLNKQYGL----SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAG  145 (162)
Q Consensus        70 ~~~f~~~~~i~~vFNGeIyN~~eLr~q~G~----~ks~sE~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~~~  145 (162)
                      |-+-......+++  |.|||-.-||.-.|.    .-.-||+|+++-.|..+|       ...+.--+|.|.|.|=| +++
T Consensus        42 qk~~~~~~tayLI--GsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~lG-------~~aLsLAEGdfcffiE~-kng  111 (201)
T PF09147_consen   42 QKMRFERGTAYLI--GSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRLG-------NSALSLAEGDFCFFIED-KNG  111 (201)
T ss_dssp             EEEEETTEEEEEE--S--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH--------GGGGGG--SSEEEEEEE-TTS
T ss_pred             eEEEecCccEEEE--EEeccHHHHHHhhheeeccceeeccHHHHHHHHHHhh-------hhhhhhhcCceEEEEec-CCC
Confidence            4444444455555  999999999977664    467899999999999886       57999999999999876 578


Q ss_pred             eEEEEecCCCcccc
Q 031302          146 TIFAALASPLNSFV  159 (162)
Q Consensus       146 ~lflARD~~G~k~~  159 (162)
                      +|.+-.|+-|-.+|
T Consensus       112 ~L~l~Tds~G~~pv  125 (201)
T PF09147_consen  112 ELTLITDSRGFNPV  125 (201)
T ss_dssp             EEEEEE-SSSSS-E
T ss_pred             cEEEEecCCCCceE
Confidence            99999999998776

Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=88.69  E-value=4.3  Score=42.97  Aligned_cols=121  Identities=12%  Similarity=0.068  Sum_probs=71.0

Q ss_pred             CChHHHHHHhhhcCCCCcEEEEeCCceeEEeeCCCCCCCCCcceeec-CCcEEEEEcceecCHHHHHHH-----h--C--
Q 031302           29 KHPEEIFNEFLISQSSNAFSINFGNAAALAYVPPENPNSVSQRWFCG-LHNVYCMFMGSLNNLSSLNKQ-----Y--G--   98 (162)
Q Consensus        29 ~~~~~l~~~F~~~~~~~a~s~~~g~~~~lAys~~~~~~~~~~~~f~~-~~~i~~vFNGeIyN~~eLr~q-----~--G--   98 (162)
                      ..+++|.+-|..-.- ..+.      +.+|..|+.-+ -...+.|.- .---+++.||||.-+.--|.-     +  .  
T Consensus       193 l~~~ql~~fY~DL~d-~~~~------s~~al~HsRFS-TNT~PsW~~AqPFR~laHNGEINTi~gN~nwm~are~~l~s~  264 (1485)
T PRK11750        193 MMPADLPRFYLDLAD-LRLE------SAICVFHQRFS-TNTLPRWPLAQPFRYLAHNGEINTITGNRQWARARAYKFQTP  264 (1485)
T ss_pred             ccHHHHHHhhhhhCC-ccee------EEEEEEECcCC-CCCCCCCCcCCCceeeeeccccccHHHHHHHHHHHHHhccCC
Confidence            567778777775422 1221      34666666544 223444432 223368999999866554322     1  1  


Q ss_pred             ----------C-CCCCchHHHHHHHHHHhHhcCCCch----------------------------hhhhhccCccEEEEE
Q 031302           99 ----------L-SKGSNEAMFVIEAYRTLRDRGPYPA----------------------------HQVLRDLDGSFGFVL  139 (162)
Q Consensus        99 ----------~-~ks~sE~eviieaY~~~~drGpyp~----------------------------~~~l~~L~GmFAF~i  139 (162)
                                . ....||++++=.+.+-|-..|-...                            .-+.+-++|-||+++
T Consensus       265 ~~~~~~~~~Pii~~~~SDSa~lDn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~  344 (1485)
T PRK11750        265 LIPDLQEAAPFVNETGSDSSSLDNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVM  344 (1485)
T ss_pred             CcchHHhhCCcCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEE
Confidence                      0 2456676665454443332221000                            014455699999999


Q ss_pred             EECCCCeEEEEecCCCcccc
Q 031302          140 YDCKAGTIFAALASPLNSFV  159 (162)
Q Consensus       140 yD~~~~~lflARD~~G~k~~  159 (162)
                      -|.  +.+.+.|||.|.||+
T Consensus       345 ~~g--~~i~A~~DrnGlRPl  362 (1485)
T PRK11750        345 TDG--RYAACNLDRNGLRPA  362 (1485)
T ss_pred             EeC--CEEEEecCCCCCccc
Confidence            985  899999999999986

>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D

Probab=87.28  E-value=1.5  Score=37.56  Aligned_cols=73  Identities=22%  Similarity=0.419  Sum_probs=42.4

Q ss_pred             CcEEEEEcceecCHHHHHHH-hCCCCCCchHHHHHHHHH-HhHhcCC---Cchhh-------hhhccC--ccEEEEEEEC
Q 031302           77 HNVYCMFMGSLNNLSSLNKQ-YGLSKGSNEAMFVIEAYR-TLRDRGP---YPAHQ-------VLRDLD--GSFGFVLYDC  142 (162)
Q Consensus        77 ~~i~~vFNGeIyN~~eLr~q-~G~~ks~sE~eviieaY~-~~~drGp---yp~~~-------~l~~L~--GmFAF~iyD~  142 (162)
                      ++++.+.||.|+++..++.. |- -.++||.|.+..+.- .+++.++   ...++       .+++++  |.+.|++.|-
T Consensus       101 ~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~N~~lsDG  179 (271)
T PF13230_consen  101 RRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPPALEELFEALRELAKEINEYGSLNFLLSDG  179 (271)
T ss_dssp             TTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS-SSSEEEEEEEE-S
T ss_pred             CcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhccCeeEEEEEECC
Confidence            58999999999999887733 32 355666665555543 3444332   11111       234444  7899999996


Q ss_pred             CCCeEEEEec
Q 031302          143 KAGTIFAALA  152 (162)
Q Consensus       143 ~~~~lflARD  152 (162)
                        ..||+-|+
T Consensus       180 --~~l~a~~~  187 (271)
T PF13230_consen  180 --ERLFAHRY  187 (271)
T ss_dssp             --S-EEEEEE
T ss_pred             --ceEEEEEc
Confidence              68888887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 14/147 (9%), Positives = 41/147 (27%), Gaps = 51/147 (34%)

Query: 1   MLAIFNKGLVN-PPQELHSPASLSSSRKPKHPEEIFNEF----LISQSSNAFSINFGNAA 55
            L++F     + P   L   + +           + N+     L+ +     +I      
Sbjct: 377 RLSVFPPS-AHIPTILL---SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI------ 426

Query: 56  ALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRT 115
                               + ++Y      L N  +L++             +++ Y  
Sbjct: 427 -------------------SIPSIYLELKVKLENEYALHRS------------IVDHYNI 455

Query: 116 LRDRGPYPAHQVLRD-LDG-SFGFVLY 140
            +    + +  ++   LD   +  + +
Sbjct: 456 PKT---FDSDDLIPPYLDQYFYSHIGH 479

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
1ct9_A	553	Asparagine synthetase B; amidotransferase, substra	99.89
1jgt_A	513	Beta-lactam synthetase; asparagine synthetase, cla	99.86
1q15_A	503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	99.83
1xff_A	240	D-fructose-6-, glucosamine--fructose-6-phosphate a	99.81
1ao0_A	459	Glutamine phosphoribosylpyrophosphate amidotransfe	99.78
2bpl_A	608	Glucosamine--fructose-6-phosphate aminotransferase	99.72
1ecf_A	504	Glutamine phosphoribosylpyrophosphate amidotransf;	99.71
3mdn_A	274	Glutamine aminotransferase class-II domain protei;	99.58
1te5_A	257	Conserved hypothetical protein; glutamine amidotra	98.53
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	97.93
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	97.79

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1

Probab=99.89  E-value=3.4e-23  Score=187.61  Aligned_cols=99  Identities=19%  Similarity=0.324  Sum_probs=83.9

Q ss_pred             eCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhC--C-CCCCchHHHHHHHHHHhHhcCCCchhhh
Q 031302           51 FGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYG--L-SKGSNEAMFVIEAYRTLRDRGPYPAHQV  127 (162)
Q Consensus        51 ~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G--~-~ks~sE~eviieaY~~~~drGpyp~~~~  127 (162)
                      +|+ .+||.....   .-.||+.+..++++++|||||||+.+||+++.  + .+|.||+|||+++|++|   |    .++
T Consensus        45 lgh-~Rlsi~~~~---~~~QP~~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~sDtEvil~l~~~~---g----~~~  113 (553)
T 1ct9_A           45 LAH-ERLSIVDVN---AGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEK---G----PEF  113 (553)
T ss_dssp             EEE-EECCCSCTT---TCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHHHH---T----TTT
T ss_pred             EEE-EeeeeeCCC---CCCCCeEeCCCCEEEEEEEEEECHHHHHHHHhccCccCCCCcHHHHHHHHHHH---H----HHH
Confidence            444 556655543   23688888888999999999999999999984  2 47889999999999986   5    479


Q ss_pred             hhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          128 LRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       128 l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      +++|+|||||+|||+++++|++|||++|+|+++
T Consensus       114 l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy  146 (553)
T 1ct9_A          114 LDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLY  146 (553)
T ss_dssp             GGGCCEEEEEEEEETTTTEEEEEECTTCCSCCE
T ss_pred             HHhCCccEEEEEEECCCCEEEEEECCCCCCCeE
Confidence            999999999999999999999999999999974

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*

Probab=99.86  E-value=3.3e-22  Score=179.67  Aligned_cols=83  Identities=12%  Similarity=0.139  Sum_probs=72.5

Q ss_pred             CcceeecC----CcEEEEEcceecCHHHHHHHhCC-CCCCchHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECC
Q 031302           69 SQRWFCGL----HNVYCMFMGSLNNLSSLNKQYGL-SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCK  143 (162)
Q Consensus        69 ~~~~f~~~----~~i~~vFNGeIyN~~eLr~q~G~-~ks~sE~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~  143 (162)
                      .||+....    ++++++|||||||+.|||+++++ .+|.||+|||+++|++||       .+++++|+|||||+|||.+
T Consensus        57 ~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvil~l~~~~g-------~~~~~~l~G~fA~~i~d~~  129 (513)
T 1jgt_A           57 APDRAVARSLTGAPTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLERYD-------LHAFRLVNGRFATVVRTGD  129 (513)
T ss_dssp             CGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHHHG-------GGGGGTCCEEEEEEEEETT
T ss_pred             CCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHHHHHHHHHh-------HHhHhhcCeeEEEEEEECC
Confidence            35554443    68999999999999999999864 489999999999999864       4799999999999999987


Q ss_pred             CCeEEEEecCCCccccc
Q 031302          144 AGTIFAALASPLNSFVF  160 (162)
Q Consensus       144 ~~~lflARD~~G~k~~~  160 (162)
                      +  |++|||++|+|+++
T Consensus       130 ~--l~~aRD~~G~kPLy  144 (513)
T 1jgt_A          130 R--VLLATDHAGSVPLY  144 (513)
T ss_dssp             E--EEEEECTTCCSCCE
T ss_pred             E--EEEEECCCCCceeE
Confidence            6  99999999999874

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*

Probab=99.83  E-value=1.5e-20  Score=168.43  Aligned_cols=98  Identities=21%  Similarity=0.196  Sum_probs=84.1

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHH---HHHHHh-CCCCCCchHHHHHHHHHHhHhcCCCc
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLS---SLNKQY-GLSKGSNEAMFVIEAYRTLRDRGPYP  123 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~---eLr~q~-G~~ks~sE~eviieaY~~~~drGpyp  123 (162)
                      .+.+|| .++|.... .+   .||+++..++++++  |||||+.   |||++| |..++.||+|||+++|++|   |   
T Consensus        27 ~~~igh-~R~~t~~~-~~---~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g~f~s~sDtEvil~l~~~~---g---   93 (503)
T 1q15_A           27 GEALSN-GYLFIEQN-GH---YQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTRL---G---   93 (503)
T ss_dssp             EEEETT-EEEEEETT-CC---EEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHHH---C---
T ss_pred             ceeEee-eeEEEcCC-CC---CCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhCCCCCCChHHHHHHHHHHH---H---
Confidence            578888 88988743 33   58888877778777  9999999   999998 4347899999999999986   5   


Q ss_pred             hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          124 AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       124 ~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                       .+++++|+|||||+|||+.++ |++|||++|+|+++
T Consensus        94 -~~~l~~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~  128 (503)
T 1q15_A           94 -ANALALAEGDFCFFIDEPNGE-LTVITESRGFSPVH  128 (503)
T ss_dssp             -GGGGGGCCSSEEEEEECTTSC-EEEEECSSSSSCCE
T ss_pred             -HHHHHHcCEEEEEEEEeCCCC-EEEEECCCCCeeEE
Confidence             479999999999999999999 99999999999874

>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*

Probab=99.81  E-value=1.3e-19  Score=147.40  Aligned_cols=104  Identities=14%  Similarity=0.209  Sum_probs=78.8

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCch
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYPA  124 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp~  124 (162)
                      +-+|| .++|....... ...||+..  +++++++||||||+.+||+++   |+ .++.||+|+|+++|+.+++.|+-+.
T Consensus        67 ~~igH-~R~at~g~~~~-~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~  142 (240)
T 1xff_A           67 TGIAH-TRWATHGEPSE-VNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLR  142 (240)
T ss_dssp             EEEEE-EECCSSSCSST-TTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHH
T ss_pred             EEEEE-EeccCCCCCCc-ccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHH
Confidence            34444 44554432212 23566665  789999999999999999997   65 4889999999999999865453211


Q ss_pred             ---hhhhhccCccEEEEEEECC-CCeEEEEecCCCcccc
Q 031302          125 ---HQVLRDLDGSFGFVLYDCK-AGTIFAALASPLNSFV  159 (162)
Q Consensus       125 ---~~~l~~L~GmFAF~iyD~~-~~~lflARD~~G~k~~  159 (162)
                         .+++++|+|||||+|||.+ .++||+|||+   |++
T Consensus       143 ~ai~~~~~~l~G~fa~~i~d~~~~~~l~~~Rd~---~PL  178 (240)
T 1xff_A          143 EAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPL  178 (240)
T ss_dssp             HHHHHHGGGCCEEEEEEEEETTCTTCEEEEEEB---SCC
T ss_pred             HHHHHHHHhcccceEEEEEecCCCCEEEEEECC---Cce
Confidence               1699999999999999986 6899999998   664

>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*

Probab=99.78  E-value=4.8e-19  Score=156.62  Aligned_cols=91  Identities=15%  Similarity=0.131  Sum_probs=74.0

Q ss_pred             CCcceee---cCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCc-hhhhhhccCccEEEEE
Q 031302           68 VSQRWFC---GLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYP-AHQVLRDLDGSFGFVL  139 (162)
Q Consensus        68 ~~~~~f~---~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp-~~~~l~~L~GmFAF~i  139 (162)
                      ..||+..   ..+++++++||+|||+.+||+++   |+ .+++||+|+|+++|.+|++..+.. ..+++++|+|||||+|
T Consensus        83 n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~~~~~a~~~~~~~l~G~fa~~i  162 (459)
T 1ao0_A           83 NVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLI  162 (459)
T ss_dssp             GSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhccceEEEE
Confidence            3567665   45789999999999999999997   65 589999999999998763111000 0369999999999999


Q ss_pred             EECCCCeEEEEecCCCccccc
Q 031302          140 YDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       140 yD~~~~~lflARD~~G~k~~~  160 (162)
                      ||  .++|+++||++|+|++.
T Consensus       163 ~d--~~~l~~~RD~~G~rPL~  181 (459)
T 1ao0_A          163 MT--ETEMIVALDPNGLRPLS  181 (459)
T ss_dssp             EC--SSEEEEEECTTCCSCCE
T ss_pred             Ee--CCEEEEEECCCCCCCeE
Confidence            99  48999999999999874

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*

Probab=99.72  E-value=1.7e-17  Score=150.91  Aligned_cols=104  Identities=14%  Similarity=0.206  Sum_probs=80.5

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCch
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYPA  124 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp~  124 (162)
                      +-+|| .++|....... ...||+..  +++++++||+|||+.+||+++   |+ .+++||+|||+++|+.|.++|+-+.
T Consensus        67 ~~igH-~R~at~g~~~~-~n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~  142 (608)
T 2bpl_A           67 TGIAH-TRWATHGEPSE-VNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLR  142 (608)
T ss_dssp             EEEEE-EECCCSSSCCG-GGCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHH
T ss_pred             EEEEE-EccCCCCCCCc-cCCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHH
Confidence            44555 55554432211 23566666  789999999999999999997   66 4899999999999998755574111


Q ss_pred             ---hhhhhccCccEEEEEEECCC-CeEEEEecCCCcccc
Q 031302          125 ---HQVLRDLDGSFGFVLYDCKA-GTIFAALASPLNSFV  159 (162)
Q Consensus       125 ---~~~l~~L~GmFAF~iyD~~~-~~lflARD~~G~k~~  159 (162)
                         .+++++|+|||||++||..+ ++|++|||+   |++
T Consensus       143 ~av~~~~~~l~G~fa~~i~d~~~~~~l~~aRd~---~PL  178 (608)
T 2bpl_A          143 EAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPL  178 (608)
T ss_dssp             HHHHHHGGGCCSSEEEEEEETTCTTCEEEEEEB---SCC
T ss_pred             HHHHHHHHhhcCceEEEEEecCCCCEEEEEECC---Cce
Confidence               15899999999999999998 999999997   664

>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*

Probab=99.71  E-value=4.2e-17  Score=146.10  Aligned_cols=92  Identities=12%  Similarity=0.097  Sum_probs=72.9

Q ss_pred             CCcceeec-CCcEEEEEcceecCHHHHHHHh---C-C-CCCCchHHHHHHHHHHhHh-cCC---Cchh------hhhhcc
Q 031302           68 VSQRWFCG-LHNVYCMFMGSLNNLSSLNKQY---G-L-SKGSNEAMFVIEAYRTLRD-RGP---YPAH------QVLRDL  131 (162)
Q Consensus        68 ~~~~~f~~-~~~i~~vFNGeIyN~~eLr~q~---G-~-~ks~sE~eviieaY~~~~d-rGp---yp~~------~~l~~L  131 (162)
                      ..||++.. ..++++++||+|||+.+||+++   | . .+++||+|||+++|.++.+ +|+   .+.+      +++++|
T Consensus        84 n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~~~~~~~l  163 (504)
T 1ecf_A           84 EAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLI  163 (504)
T ss_dssp             CCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHC
T ss_pred             ccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHHHHhhhhc
Confidence            35666643 3569999999999999999987   2 3 5899999999999987643 342   1111      579999


Q ss_pred             CccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          132 DGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       132 ~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      +|+|||++||.. ++||++||++|+||+.
T Consensus       164 ~G~fa~v~~~~~-~~l~a~RD~~GirPL~  191 (504)
T 1ecf_A          164 RGAYACVAMIIG-HGMVAFRDPNGIRPLV  191 (504)
T ss_dssp             CEEEEEEEEETT-TEEEEEECTTCCSCCE
T ss_pred             CccceEEEEEcC-CeEEEEECCCCCCceE
Confidence            999999999864 4799999999999974

>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}

Probab=99.58  E-value=1.7e-15  Score=127.14  Aligned_cols=105  Identities=14%  Similarity=0.099  Sum_probs=73.4

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC------CCCCchHHHHHHHHHHhHh
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL------SKGSNEAMFVIEAYRTLRD  118 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~------~ks~sE~eviieaY~~~~d  118 (162)
                      .+-+|+ .++|....... ...||+..  +++.+++||+|||+.+||+++   |.      .+++||+|+|+++|.+++.
T Consensus        82 ~~~igH-vR~AT~g~~s~-~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~~  157 (274)
T 3mdn_A           82 GLFLSH-VRASTGSCISR-NNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGL  157 (274)
T ss_dssp             EEEEEE-C-------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTTT
T ss_pred             CEEEEE-EccccCCCCcc-cCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhhh
Confidence            456777 77777543222 23566665  689999999999999999986   41      2789999999999966432


Q ss_pred             cCCCch---hhhhhccCcc-----------EEEEEEECCCCeEEEEecC-CCcccc
Q 031302          119 RGPYPA---HQVLRDLDGS-----------FGFVLYDCKAGTIFAALAS-PLNSFV  159 (162)
Q Consensus       119 rGpyp~---~~~l~~L~Gm-----------FAF~iyD~~~~~lflARD~-~G~k~~  159 (162)
                      .+ -|.   .+++++|+||           |+|+++|.  ++|+++||+ +|+|++
T Consensus       158 ~~-~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pl  210 (274)
T 3mdn_A          158 EH-DPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPS  210 (274)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCC
T ss_pred             cC-CHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCe
Confidence            11 111   2689999999           99999985  689999998 999984

>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1

Probab=98.53  E-value=4e-08  Score=81.16  Aligned_cols=107  Identities=13%  Similarity=0.032  Sum_probs=72.5

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceeec--CCcEEEEEcceecCHHHHHHHhCCCCCCchHHHHHHHHHHhHh-cCC-Cc
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFCG--LHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRD-RGP-YP  123 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~~--~~~i~~vFNGeIyN~~eLr~q~G~~ks~sE~eviieaY~~~~d-rGp-yp  123 (162)
                      .+-+|| .+.|=.-.... ...||....  .+++.++.||.|.|+.+ |++++...++||+|+|.++.....+ .+. .|
T Consensus        72 ~~~IgH-vR~AT~G~~~~-~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~~~~~~s~TDSEvi~~li~~~~~~~~~~~~  148 (257)
T 1te5_A           72 ETVIGH-IRQANVGKVGL-SNTHPFIRELGGRYWTFAHNGQLADFQP-KPGFYRPVGETDSEAAFCDLLNRVRRAFPEPV  148 (257)
T ss_dssp             EEEEEE-EEECCCSCCSG-GGCSCEEEEETTEEEEEEEESCBSSCCC-CCCSSCCSSCCHHHHHHHHHHHHHHHHCSSCC
T ss_pred             cEEEEE-eecCCCCCCCc-CcCCCcEecCCCCeEEEEecCcccCchh-hhccCCcccCCHHHHHHHHHHHHHHHhcCCCc
Confidence            355666 44442221111 345666654  35799999999999999 8775556899999999998875332 111 11


Q ss_pred             -h---hhhhhccC------ccEEEEEEECCCCeEEEEec----------CCCcccc
Q 031302          124 -A---HQVLRDLD------GSFGFVLYDCKAGTIFAALA----------SPLNSFV  159 (162)
Q Consensus       124 -~---~~~l~~L~------GmFAF~iyD~~~~~lflARD----------~~G~k~~  159 (162)
                       .   .+.++++.      |.|+|++-|.  .+|++.||          ++|++++
T Consensus       149 ~~~a~~~al~~l~~~~~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL  202 (257)
T 1te5_A          149 PVEVLLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARL  202 (257)
T ss_dssp             CHHHHHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCccccc
Confidence             1   23555555      9999999985  78999999          8988765

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=97.93  E-value=2.7e-05  Score=78.48  Aligned_cols=121  Identities=11%  Similarity=0.077  Sum_probs=74.7

Q ss_pred             CCChHHHHHHhhhcC-CCCcEEEEeCCceeEEeeCCCCC-CCCCcceeecCCcEEEEEcceecCHHHHHHHh--------
Q 031302           28 PKHPEEIFNEFLISQ-SSNAFSINFGNAAALAYVPPENP-NSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY--------   97 (162)
Q Consensus        28 ~~~~~~l~~~F~~~~-~~~a~s~~~g~~~~lAys~~~~~-~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~--------   97 (162)
                      -..++++.+.|..-. +.=.-.+.+||   --||-...+ ..+-||+.      +++.||||.|+..+|+.+        
T Consensus       182 mgl~~~v~~~y~dL~d~~~~g~~aigH---~RySTnt~p~w~~AQPf~------~laHNGeInn~~~nr~~m~are~~~~  252 (1479)
T 1ea0_A          182 MFLAEQLTTFYPDLLDERFESDFAIYH---QRYSTNTFPTWPLAQPFR------MLAHNGEINTVKGNVNWMKAHETRME  252 (1479)
T ss_dssp             SSCGGGHHHHCGGGGSTTCCBSEEEEE---ECCCSCSCCCSTTSSCCS------SEEEEECCTTHHHHHHHHHHHGGGCC
T ss_pred             CcCHHHhhhhhhhhcccccceeEEEee---ecccCCCCCCcccCCccE------EEEECChhhCHHHHHHHHHHhHhhhc
Confidence            456788888776432 21111233444   123321111 02334442      289999999999999542        


Q ss_pred             ----C--------C-CCCCchHHHHHHHHHHhHhcCCCchh----------------------------hhhhccCccEE
Q 031302           98 ----G--------L-SKGSNEAMFVIEAYRTLRDRGPYPAH----------------------------QVLRDLDGSFG  136 (162)
Q Consensus        98 ----G--------~-~ks~sE~eviieaY~~~~drGpyp~~----------------------------~~l~~L~GmFA  136 (162)
                          |        . ..+.||+|+|.++.+.+...|.-..+                            .+++.++|-||
T Consensus       253 ~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~g~~l~~A~~~liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~s  332 (1479)
T 1ea0_A          253 HPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAA  332 (1479)
T ss_dssp             CSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEE
T ss_pred             CchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHhCchhhcccccCCHHHHHHHHHHHHhhccCCCcEE
Confidence                2        2 57899999994444433222311111                            23579999999


Q ss_pred             EEEEECCCCeEEEEecCCCcccc
Q 031302          137 FVLYDCKAGTIFAALASPLNSFV  159 (162)
Q Consensus       137 F~iyD~~~~~lflARD~~G~k~~  159 (162)
                      +++-|.  +.+.++|||+|.||+
T Consensus       333 lv~~dg--~~l~a~~DrnGlRPl  353 (1479)
T 1ea0_A          333 LAMTDG--RWVVGGMDRNGLRPM  353 (1479)
T ss_dssp             EEECSS--SEEEEECCTTCCSCC
T ss_pred             EEEEeC--CEEEEEecCCCCcce
Confidence            999765  899999999999986

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=97.79  E-value=7.5e-05  Score=75.56  Aligned_cols=77  Identities=17%  Similarity=0.129  Sum_probs=57.1

Q ss_pred             EEEcceecCHHHHH------HH------h--------C--CCCCCchHHHHHHHHHHhHhcCCCchh-------------
Q 031302           81 CMFMGSLNNLSSLN------KQ------Y--------G--LSKGSNEAMFVIEAYRTLRDRGPYPAH-------------  125 (162)
Q Consensus        81 ~vFNGeIyN~~eLr------~q------~--------G--~~ks~sE~eviieaY~~~~drGpyp~~-------------  125 (162)
                      ++.||||.|+..+|      ++      +        +  ...+.||+|+|.++.+-+-..|.-..+             
T Consensus       224 LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g~~l~~A~~~liPeaw~~~  303 (1520)
T 1ofd_A          224 LGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAMILVPEAYKNQ  303 (1520)
T ss_dssp             EEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCTTC
T ss_pred             eEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcCCCHHHHHHHhCcchhccc
Confidence            89999999999998      32      1        3  258899999986555533222311111             


Q ss_pred             -----------------hhhhccCccEEEEEEECCCCeEEEEecCCCcccc
Q 031302          126 -----------------QVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFV  159 (162)
Q Consensus       126 -----------------~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~  159 (162)
                                       .+++.++|-||+++-|.  +.+.++|||+|.||+
T Consensus       304 ~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~DrnGlRPl  352 (1520)
T 1ofd_A          304 PALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGLRPA  352 (1520)
T ss_dssp             GGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCCSCC
T ss_pred             ccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCCCCCce
Confidence                             13688999999999876  899999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1q15a2	204	beta-Lactam synthetase {Pectobacterium carotovorum	99.93
d1ct9a2	192	Asparagine synthetase B, N-terminal domain {Escher	99.93
d1jgta2	206	beta-Lactam synthetase {Streptomyces clavuligerus	99.91
d1gph12	234	Glutamine PRPP amidotransferase, N-terminal domain	99.67
d1ecfa2	249	Glutamine PRPP amidotransferase, N-terminal domain	99.47
d1xffa_	238	Glucosamine 6-phosphate synthase, N-terminal domai	99.47
d1te5a_	253	Hypothetical protein YafJ (PA1307) {Pseudomonas ae	96.39

>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]

Probab=99.93  E-value=4.4e-27  Score=190.74  Aligned_cols=83  Identities=22%  Similarity=0.189  Sum_probs=71.7

Q ss_pred             cceeecCCcEEEEEcceecCHHHHHHHhC---C-CCCCchHHHHHHHHHHhHhcCCCchhhhhhccCccEEEEEEECCCC
Q 031302           70 QRWFCGLHNVYCMFMGSLNNLSSLNKQYG---L-SKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAG  145 (162)
Q Consensus        70 ~~~f~~~~~i~~vFNGeIyN~~eLr~q~G---~-~ks~sE~eviieaY~~~~drGpyp~~~~l~~L~GmFAF~iyD~~~~  145 (162)
                      |.-....++++++|||||||+.+||++++   . .++.||+|||+++|+.||       .+++++|+|||||+|||+ ++
T Consensus        41 ~~~~~~~~ry~~~~nGEIYN~~~lr~~l~~~~~~~~~~sDtEvll~~~~~~G-------~~~l~~l~G~Faf~i~~~-~~  112 (204)
T d1q15a2          41 HYQKCEMERGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTRLG-------ANALALAEGDFCFFIDEP-NG  112 (204)
T ss_dssp             CEEEEECSSSEEEEEECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHHHC-------GGGGGGCCSSEEEEEECT-TS
T ss_pred             CCCcccCCcEEEEEEEEEcCHHHHHHHHHHcCCCccCCChHHHHHHHHHHHH-------HHHHHhhCCceEEEEecC-Cc
Confidence            33335667999999999999999999973   3 478999999999999864       589999999999999775 57


Q ss_pred             eEEEEecCCCccccc
Q 031302          146 TIFAALASPLNSFVF  160 (162)
Q Consensus       146 ~lflARD~~G~k~~~  160 (162)
                      ++++||||+|+||+.
T Consensus       113 ~l~l~RD~~G~KPLy  127 (204)
T d1q15a2         113 ELTVITESRGFSPVH  127 (204)
T ss_dssp             CEEEEECSSSSSCCE
T ss_pred             eEEEEECCCCccceE
Confidence            899999999999985

>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=5.2e-26  Score=179.70  Aligned_cols=100  Identities=19%  Similarity=0.299  Sum_probs=83.6

Q ss_pred             EeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhCC---CCCCchHHHHHHHHHHhHhcCCCchhh
Q 031302           50 NFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGL---SKGSNEAMFVIEAYRTLRDRGPYPAHQ  126 (162)
Q Consensus        50 ~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G~---~ks~sE~eviieaY~~~~drGpyp~~~  126 (162)
                      .+|+ .+||.+..+..   .|+.+...++++++|||||||+.+|++++..   ..++||+|+++++|++|   |    .+
T Consensus        44 ~lgh-~Rlsi~~~~~~---~~~~~~~~~~~~lv~NGeI~N~~~l~~~l~~~~~~~s~sDtevll~~~~~~---g----~~  112 (192)
T d1ct9a2          44 ILAH-ERLSIVDVNAG---AQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEK---G----PE  112 (192)
T ss_dssp             EEEE-EECCCSCTTTC---CSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHHHH---T----TT
T ss_pred             EEEE-EEEEEccccCC---cccccccCCceEEEecCccchhHHHHHHHhcCcccCCCCcHHHHHHHhhhc---c----hh
Confidence            4455 66777664433   3445567789999999999999999999832   37789999999999986   4    47


Q ss_pred             hhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          127 VLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       127 ~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      ++++|+|||||||||.++++|++|||++|+|+++
T Consensus       113 ~~~~l~G~fa~~i~d~~~~~l~~aRD~~G~kPLy  146 (192)
T d1ct9a2         113 FLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLY  146 (192)
T ss_dssp             TGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCE
T ss_pred             hhhhhhhheEEEEEecCcceeEEEEccccceeEE
Confidence            9999999999999999999999999999999985

>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.91  E-value=1.4e-25  Score=181.34  Aligned_cols=97  Identities=11%  Similarity=0.103  Sum_probs=79.4

Q ss_pred             EEEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHhCCC-CCCchHHHHHHHHHHhHhcCCCchhh
Q 031302           48 SINFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQYGLS-KGSNEAMFVIEAYRTLRDRGPYPAHQ  126 (162)
Q Consensus        48 s~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~G~~-ks~sE~eviieaY~~~~drGpyp~~~  126 (162)
                      .+.++| +.+++.+...+    ||+..  .+..+||||||||+.|||+++|+. ++.||+|||+++|++||       .+
T Consensus        44 ~~~l~h-~~~~~~~~~~~----qp~~~--~~~~~v~NGeIyN~~eL~~~lg~~~~s~sDtEvil~l~~~~G-------~~  109 (206)
T d1jgta2          44 AATLVH-APSVAPDRAVA----RSLTG--APTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLERYD-------LH  109 (206)
T ss_dssp             EEEEEE-CTTSCGGGGEE----EECSS--SSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHHHG-------GG
T ss_pred             ceeecc-cccccCCcccC----cccCC--CCEEEEEEEEecCHHHHHHHhCCCCCCCCchHHHHHHhhhhC-------HH
Confidence            345554 44555544333    55544  368999999999999999999884 88999999999999875       58


Q ss_pred             hhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          127 VLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       127 ~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                      ++++|+|||||+|||+  +++++|||++|+|++.
T Consensus       110 ~l~~l~G~Fa~vi~d~--~~l~laRD~~G~KPLy  141 (206)
T d1jgta2         110 AFRLVNGRFATVVRTG--DRVLLATDHAGSVPLY  141 (206)
T ss_dssp             GGGTCCEEEEEEEEET--TEEEEEECTTCCSCCE
T ss_pred             HHHHHHhhhheeeeec--ceEEEEEecccceeEE
Confidence            9999999999999996  5899999999999874

>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=3.3e-17  Score=130.24  Aligned_cols=83  Identities=16%  Similarity=0.134  Sum_probs=67.7

Q ss_pred             CCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCc-hhhhhhccCccEEEEEEECCCCeEEEE
Q 031302           76 LHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYP-AHQVLRDLDGSFGFVLYDCKAGTIFAA  150 (162)
Q Consensus        76 ~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp-~~~~l~~L~GmFAF~iyD~~~~~lflA  150 (162)
                      .+++++|+||+||||.|||+++   |. ..+++|+|+++++|+.++...... ..+++++|+|||||+++|+  +.++++
T Consensus        94 ~~~~~lvhNG~I~N~~eL~~~l~~~g~~f~~~td~e~~~~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~--~~~~~~  171 (234)
T d1gph12          94 NGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMTE--TEMIVA  171 (234)
T ss_dssp             TCCEEEEEEEEETTHHHHHHHHHHTTCCBSSCCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCEEEEEEEECS--SCEEEE
T ss_pred             cceEEEEecccccCHHHHHHHHHHcCCeeeeecchhHHHHHHHHHhhhhHHHHHHHHHHhcCCceEEEEeec--CceeEE
Confidence            4689999999999999999997   66 489999999999998653111000 1358999999999999985  679999


Q ss_pred             ecCCCccccc
Q 031302          151 LASPLNSFVF  160 (162)
Q Consensus       151 RD~~G~k~~~  160 (162)
                      ||+.|+||+.
T Consensus       172 rD~~G~~PL~  181 (234)
T d1gph12         172 LDPNGLRPLS  181 (234)
T ss_dssp             ECTTCCSCCE
T ss_pred             EcCCCCcCEE
Confidence            9999999974

>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.3e-13  Score=111.24  Aligned_cols=110  Identities=10%  Similarity=0.067  Sum_probs=78.0

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh----CC-CCCCchHHHHHHHHHHhHhcCCCc
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY----GL-SKGSNEAMFVIEAYRTLRDRGPYP  123 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~----G~-~ks~sE~eviieaY~~~~drGpyp  123 (162)
                      +-+|| .++|-.-.....-.||.......++.+|+||+|+||.||++++    |. .+++||+||+++++..+.+.....
T Consensus        67 ~gIGH-tR~aT~G~~~~~nahP~~~~~~~~~~lvhNG~I~Ny~eL~~~~l~~~g~~f~s~tDtEvi~~li~~~~~~~~~~  145 (249)
T d1ecfa2          67 MGIGH-VRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHY  145 (249)
T ss_dssp             EEEEE-EECCBTTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSS
T ss_pred             eeeeE-eecccCCCCchhcccccccCCCCcEEEEeeeeeccHHHHHHHHHHhcCccccccchHHHHHHHHHHHHhccccc
Confidence            44566 5555433222212355455555689999999999999997653    55 589999999999987766544321


Q ss_pred             ----------hhhhhhccCccEEEEEEECCCCeEEEEecCCCccccc
Q 031302          124 ----------AHQVLRDLDGSFGFVLYDCKAGTIFAALASPLNSFVF  160 (162)
Q Consensus       124 ----------~~~~l~~L~GmFAF~iyD~~~~~lflARD~~G~k~~~  160 (162)
                                ...++++|+|.|++++.. ....++++||+.|+||+.
T Consensus       146 ~~~~~~~~~~i~~~~~~l~Gs~~~~~~~-~~~~~~~~rD~~GirPL~  191 (249)
T d1ecfa2         146 PLEADNIFAAIAATNRLIRGAYACVAMI-IGHGMVAFRDPNGIRPLV  191 (249)
T ss_dssp             SCCHHHHHHHHHHHHHHCCEEEEEEEEE-TTTEEEEEECTTCCSCCE
T ss_pred             cchhhhHHHHHHHHHHhcCCCceEEEEe-cCCCceEEEecCCCccce
Confidence                      134778899999988775 446799999999999874

>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glucosamine 6-phosphate synthase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.8e-13  Score=108.99  Aligned_cols=100  Identities=14%  Similarity=0.193  Sum_probs=71.5

Q ss_pred             EEeCCceeEEeeCCCCCCCCCcceeecCCcEEEEEcceecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhHhcCCCch
Q 031302           49 INFGNAAALAYVPPENPNSVSQRWFCGLHNVYCMFMGSLNNLSSLNKQY---GL-SKGSNEAMFVIEAYRTLRDRGPYPA  124 (162)
Q Consensus        49 ~~~g~~~~lAys~~~~~~~~~~~~f~~~~~i~~vFNGeIyN~~eLr~q~---G~-~ks~sE~eviieaY~~~~drGpyp~  124 (162)
                      +-+|| .++|-...... ...||.  ..+++++|+||+||||.+||++|   |+ .++.||+|+|++++..+...+....
T Consensus        67 ~~igH-~R~aT~g~~~~-~n~~p~--~~~~~~~vhNG~I~N~~~L~~~L~~~g~~f~s~sDtEvi~~l~~~~~~~~~~~~  142 (238)
T d1xffa_          67 TGIAH-TRWATHGEPSE-VNAHPH--VSEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLR  142 (238)
T ss_dssp             EEEEE-EECCSSSCSST-TTSSCE--EETTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHH
T ss_pred             EEEee-ecccccccccc-cCCccc--cCCcEEEEEcCcccCHHHHHHHHHHcCCCcccCCcchhhhhhhhHhhhcCCCHH
Confidence            34565 55654433222 222333  34689999999999999999987   65 4889999999999977654432211


Q ss_pred             ---hhhhhccCccEEEEEEECCC-CeEEEEec
Q 031302          125 ---HQVLRDLDGSFGFVLYDCKA-GTIFAALA  152 (162)
Q Consensus       125 ---~~~l~~L~GmFAF~iyD~~~-~~lflARD  152 (162)
                         .+++++|+|||||+++|... ..++.+||
T Consensus       143 e~i~~~~~~l~G~~a~~i~~~~~~~~i~~~~~  174 (238)
T d1xffa_         143 EAVLRAIPQLRGAYGTVIMDSRHPDTLLAARS  174 (238)
T ss_dssp             HHHHHHGGGCCEEEEEEEEETTCTTCEEEEEE
T ss_pred             HHHHHHHHHccCchhhhhhhccCCCEEEEECC
Confidence               35899999999999999865 67777776

>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Hypothetical protein YafJ (PA1307)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.39  E-value=0.002  Score=49.73  Aligned_cols=94  Identities=17%  Similarity=0.164  Sum_probs=52.7

Q ss_pred             EEEEeCCceeEEeeCCCCCCCCCcceee--cCCcEEEEEcceecCHHHHHHHhCCCCCCchHHHHHHHHH-HhHhcCC--
Q 031302           47 FSINFGNAAALAYVPPENPNSVSQRWFC--GLHNVYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYR-TLRDRGP--  121 (162)
Q Consensus        47 ~s~~~g~~~~lAys~~~~~~~~~~~~f~--~~~~i~~vFNGeIyN~~eLr~q~G~~ks~sE~eviieaY~-~~~drGp--  121 (162)
                      -.+-+|| .+.|=.-.... ...||...  ..+++.++.||.|.|+.+|++.+- .+++||+|++..... .+++..+  
T Consensus        70 s~~~igH-vR~AT~G~~~~-~N~hPf~~~~~~~~~~f~HNG~i~n~~~l~~~~~-~~g~tDse~~~~~i~~~l~~~~~~~  146 (253)
T d1te5a_          70 SETVIGH-IRQANVGKVGL-SNTHPFIRELGGRYWTFAHNGQLADFQPKPGFYR-PVGETDSEAAFCDLLNRVRRAFPEP  146 (253)
T ss_dssp             EEEEEEE-EEECCCSCCSG-GGCSCEEEEETTEEEEEEEESCBSSCCCCCCSSC-CSSCCHHHHHHHHHHHHHHHHCSSC
T ss_pred             CcEEEEE-eeeccCCCCcc-ccCCceEEEcCCCCEEEEEeeeEechhhhhhhhc-ccCCCccchhHHHHHHHHHhccccC
Confidence            3555777 45553322221 22455432  235788999999999999987652 355666666554443 2222222  


Q ss_pred             Cchhhh---hhcc------CccEEEEEEECC
Q 031302          122 YPAHQV---LRDL------DGSFGFVLYDCK  143 (162)
Q Consensus       122 yp~~~~---l~~L------~GmFAF~iyD~~  143 (162)
                      .+.+.+   ++++      .+.+.|+++|-.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~dg~  177 (253)
T d1te5a_         147 VPVEVLLPVLISACDEYRKKGVFNALISDGD  177 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTBCCEEEEESSS
T ss_pred             CchHHHHHHHHHHHHhhccceEEEEEccCCC
Confidence            222222   2222      568889998864