Citrus Sinensis ID: 031308

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENELRQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccEEEEEEccccccccccEEEEEEEcccHHHHccccccccccccccccccHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHcEEEEEHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHcHHHHccccccccEEEEEccccccccccEEEEEEEEcccHHHcccccccccHHHHHccccHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mtkfrklnrptghrmSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSrirvgdaapmaYIDRFVDREnelrqskpavpqpppraaldpwtrsrltknfappkqekssdaei
Flexible Loop (DISEMBL)
mtkfrklnrptghrmsmLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAyrykdraggytrllrsrirvgdaapMAYIDRFVDRENELrqskpavpqpppraaldpwtrsrltknfappkqekssdaei
Low Complexity Region (SEG)
MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENELRQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI
Disordered region (IsUnstruct)
***********************QLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFV***********************************************
Disordered Region (DISOPRED)
**KFRK*NRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDR*********************************************
Disordered Region (DISEMBL)
MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENE**************AALDPWTRSRLTKNF*************
Disordered Region (DISPRO)
************HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRE********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENELRQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q749B4	175	50S ribosomal protein L17	yes	no	0.770	0.708	0.488	9e-29
A0L5Z9	126	50S ribosomal protein L17	yes	no	0.695	0.888	0.535	3e-28
A0LIL8	151	50S ribosomal protein L17	yes	no	0.782	0.834	0.484	7e-28
B3E858	124	50S ribosomal protein L17	yes	no	0.664	0.862	0.542	2e-27
A1ALW8	127	50S ribosomal protein L17	yes	no	0.664	0.842	0.542	8e-27
Q250K3	112	50S ribosomal protein L17	yes	no	0.670	0.964	0.537	1e-26
B8G1Z5	112	50S ribosomal protein L17	yes	no	0.670	0.964	0.537	1e-26
Q39XX8	178	50S ribosomal protein L17	yes	no	0.708	0.640	0.491	2e-26
C6E4M9	168	50S ribosomal protein L17	yes	no	0.664	0.636	0.514	3e-26
B6IRT1	139	50S ribosomal protein L17	yes	no	0.708	0.820	0.504	7e-26

>sp|Q749B4|RL17_GEOSL 50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rplQ PE=3 SV=1

 Score =  125 bits (315), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 89/125 (71%), Gaps = 1/125 (0%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+L R T HR++M R MV+ L  HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAA 67

Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDR-ENELRQS 123
           +++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD AP++ I+   ++ E ++++S
Sbjct: 68  SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDCAPLSVIELVEEQFEKKVKKS 127

Query: 124 KPAVP 128
           KP  P
Sbjct: 128 KPTAP 132

Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231)

>sp|A0L5Z9|RL17_MAGSM 50S ribosomal protein L17 OS=Magnetococcus sp. (strain MC-1) GN=rplQ PE=3 SV=1

 Score =  124 bits (310), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/114 (53%), Positives = 87/114 (76%), Gaps = 2/114 (1%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+L+R T HR +M++ M+  L KHERIETTV +AKE+R +A+ ++ LGK G L A R+A 
Sbjct: 8   RRLSRDTSHRQAMIKNMLVSLFKHERIETTVPRAKELRPVAEKVITLGKRGDLHARRQAL 67

Query: 65  AFVRGD-DVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRE 117
           + + GD +V+HKLFT+LA R KDR GGYTR+L++R R GD APM++I+  V+R+
Sbjct: 68  SILNGDKEVVHKLFTDLAERNKDRQGGYTRILKTRFRYGDCAPMSFIE-LVERD 120

Magnetococcus sp. (strain MC-1) (taxid: 156889)

>sp|A0LIL8|RL17_SYNFM 50S ribosomal protein L17 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplQ PE=3 SV=1

 Score =  122 bits (307), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 83/126 (65%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           RKLNR T HR++M R MV+ L++HERI TT+ KAKE+RR AD M+ LGK G L A R+  
Sbjct: 8   RKLNRATSHRLAMFRNMVTSLLQHERIFTTLPKAKELRRWADWMISLGKRGDLHARRQVM 67

Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENELRQSK 124
           A VR  + + K+F EL  RY+ R GGYTR++++  R GDA+PM  I+   + +   R+ K
Sbjct: 68  ACVREKETVQKIFAELGPRYQSRPGGYTRIVKAGYRRGDASPMCLIELITEAKQPPRKEK 127

Query: 125 PAVPQP 130
              P P
Sbjct: 128 AKKPAP 133

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

>sp|B3E858|RL17_GEOLS 50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplQ PE=3 SV=1

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 80/107 (74%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+L R T HR++M R MV+ L+ HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLLNHERIVTTDAKAKEIRSVAEKMITLGKRGDLHAHRQAA 67

Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYID 111
           A++R   V+ KLF+ +A RYKDRAGGYTR+++   R+GDAA ++ I+
Sbjct: 68  AYIREKSVVTKLFSTIAPRYKDRAGGYTRIIKLGQRLGDAASLSVIE 114

Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) (taxid: 398767)

>sp|A1ALW8|RL17_PELPD 50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379) GN=rplQ PE=3 SV=1

 Score =  119 bits (298), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 77/107 (71%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+L R T HR +M R MV+ L  HE+I TT AKAKE+R +A+ M+ LGK G L + R AA
Sbjct: 8   RRLGRKTSHREAMFRNMVTSLFAHEKITTTDAKAKEIRSVAEKMITLGKRGDLHSTRIAA 67

Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYID 111
           AF+R   V+ KLF+ +A RYK+RAGGYTR+++   R GDAAPM+ I+
Sbjct: 68  AFIREKSVVTKLFSTIAPRYKERAGGYTRIIKVGSRNGDAAPMSIIE 114

Pelobacter propionicus (strain DSM 2379) (taxid: 338966)

>sp|Q250K3|RL17_DESHY 50S ribosomal protein L17 OS=Desulfitobacterium hafniense (strain Y51) GN=rplQ PE=3 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 78/108 (72%)

Query: 4   FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
           +RKL R TGHR SMLR + + L+KHERI+TT A+AKEV  +A+ M+ LGK+G L A R A
Sbjct: 3   YRKLGRNTGHRGSMLRNLATSLLKHERIQTTEARAKEVNAIAEKMITLGKQGDLAARRNA 62

Query: 64  AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYID 111
             ++  +DV+ KLFTE+A +Y DR GGYTR+++   R GDAA M  I+
Sbjct: 63  LTYLLEEDVVTKLFTEIAPKYADRQGGYTRVIKVGPRRGDAAEMVLIE 110

Desulfitobacterium hafniense (strain Y51) (taxid: 138119)

>sp|B8G1Z5|RL17_DESHD 50S ribosomal protein L17 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplQ PE=3 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 78/108 (72%)

Query: 4   FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
           +RKL R TGHR SMLR + + L+KHERI+TT A+AKEV  +A+ M+ LGK+G L A R A
Sbjct: 3   YRKLGRNTGHRGSMLRNLATSLLKHERIQTTEARAKEVNAIAEKMITLGKQGDLAARRNA 62

Query: 64  AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYID 111
             ++  +DV+ KLFTE+A +Y DR GGYTR+++   R GDAA M  I+
Sbjct: 63  LTYLLEEDVVTKLFTEIAPKYADRQGGYTRVIKVGPRRGDAAEMVLIE 110

Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) (taxid: 272564)

>sp|Q39XX8|RL17_GEOMG 50S ribosomal protein L17 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplQ PE=3 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 82/114 (71%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+L R T HR++M R MV+  ++HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSFLEHERITTTDAKAKELRSIAEKMITLGKRGDLHAQRQAA 67

Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDREN 118
           +++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD AP++ I+   ++ N
Sbjct: 68  SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDNAPLSVIELVEEQVN 121

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)

>sp|C6E4M9|RL17_GEOSM 50S ribosomal protein L17 OS=Geobacter sp. (strain M21) GN=rplQ PE=3 SV=1

 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 79/107 (73%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+L R T HR++M R MV+  ++HE+I TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSFLQHEKITTTDAKAKELRSIAEKMITLGKRGDLHATRQAA 67

Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYID 111
           A++R   V+ KLFTE+A RY +R GGYTR+++  IR GD AP++ ++
Sbjct: 68  AYIRDKKVVTKLFTEIAPRYTERPGGYTRIIKLGIRPGDNAPVSVLE 114

Geobacter sp. (strain M21) (taxid: 443144)

>sp|B6IRT1|RL17_RHOCS 50S ribosomal protein L17 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplQ PE=3 SV=1

 Score =  116 bits (290), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 80/115 (69%), Gaps = 1/115 (0%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           RK NR T HR++M   M + L+KHE+I+TT+ KAK++R + + ++ LGK+G L   R A 
Sbjct: 8   RKFNRTTSHRLAMFSNMANALIKHEQIKTTLPKAKDLRPIVERLITLGKKGGLANKRLAY 67

Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENE 119
           A +R  D++ KLFT LA RYK R GGYTR+L++  R GDAAPM  I+  VDR+ E
Sbjct: 68  AELRDHDMVEKLFTTLAERYKGRPGGYTRVLKAGFRYGDAAPMGVIE-LVDRDPE 121

Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
224095978	160	predicted protein [Populus trichocarpa]	0.993	1.0	0.881	1e-78
297811075	160	ribosomal protein L17 family protein [Ar	0.993	1.0	0.863	1e-76
297797483	160	ribosomal protein L17 family protein [Ar	0.993	1.0	0.857	4e-76
225431527	160	PREDICTED: 50S ribosomal protein L17 [Vi	0.993	1.0	0.906	1e-75
224083430	160	predicted protein [Populus trichocarpa]	0.993	1.0	0.888	2e-75
18424850	160	large subunit ribosomal protein L17 [Ara	0.993	1.0	0.832	5e-75
18416086	160	Ribosomal protein L17 family protein [Ar	0.993	1.0	0.844	2e-74
21555473	160	50S ribosomal protein L17 [Arabidopsis t	0.993	1.0	0.826	3e-74
255552384	160	ribosomal protein L17, putative [Ricinus	0.993	1.0	0.869	3e-73
351723995	159	uncharacterized protein LOC100305861 [Gl	0.968	0.981	0.859	6e-73

>gi|224095978|ref|XP_002310514.1| predicted protein [Populus trichocarpa] gi|222853417|gb|EEE90964.1| predicted protein [Populus trichocarpa]

 Score =  297 bits (760), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 142/161 (88%), Positives = 153/161 (95%), Gaps = 1/161 (0%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKLNRPTGHRMSMLRTMVSQL+KHERIETTVAKAKE+RRLADNMVQLGKEGSLCA+
Sbjct: 1   MTKFRKLNRPTGHRMSMLRTMVSQLIKHERIETTVAKAKEIRRLADNMVQLGKEGSLCAS 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENEL 120
           RRAAAFVRGDDVIHKLF+ELAYRYKDRAGGYTR+LR+RIRVGDAAPMAYI+ F+DRENEL
Sbjct: 61  RRAAAFVRGDDVIHKLFSELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIE-FIDRENEL 119

Query: 121 RQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI 161
           RQSKP  PQPP RA +DPWTRSRLT+  APPK+EKSSD EI
Sbjct: 120 RQSKPPTPQPPQRAPMDPWTRSRLTRQCAPPKEEKSSDPEI 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811075|ref|XP_002873421.1| ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata] gi|297319258|gb|EFH49680.1| ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  290 bits (742), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 139/161 (86%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RP GHRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNMVQLGKEG+L AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMVQLGKEGTLAAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENEL 120
           RRAA FVRGDDV+HK+FTELAYRYKDRAGGYTR+LR+RIRVGDAAPMAYI+ F+DRENEL
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIE-FIDRENEL 119

Query: 121 RQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI 161
           RQSKPA PQPP R  LDPW RSRLTK FAPPK+EKSSD+E+
Sbjct: 120 RQSKPATPQPPQRVPLDPWERSRLTKQFAPPKEEKSSDSEL 160

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797483|ref|XP_002866626.1| ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata] gi|297312461|gb|EFH42885.1| ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  288 bits (738), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 138/161 (85%), Positives = 150/161 (93%), Gaps = 1/161 (0%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RP GHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSL AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLAAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENEL 120
           RRAA FVRGDDV+HK+FTELAYRYKDRAGGYTR+LR+RIRVGDAAPMAYI+ F+DRENEL
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIE-FIDRENEL 119

Query: 121 RQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI 161
           RQSKPA PQPPPR  LDPW RSRLT+ +APPK+EKS D+++
Sbjct: 120 RQSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKSWDSDL 160

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431527|ref|XP_002281739.1| PREDICTED: 50S ribosomal protein L17 [Vitis vinifera] gi|296088573|emb|CBI37564.3| unnamed protein product [Vitis vinifera]

 Score =  286 bits (733), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 146/161 (90%), Positives = 152/161 (94%), Gaps = 1/161 (0%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEGSLCAA
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSLCAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENEL 120
           RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLR+RIRVGDAAPMAYI+ F+DRENEL
Sbjct: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIE-FIDRENEL 119

Query: 121 RQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI 161
           RQSKPA PQPP R  LDPWTRSRL K FAPPK++KSSD EI
Sbjct: 120 RQSKPATPQPPQRVPLDPWTRSRLCKQFAPPKEDKSSDPEI 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083430|ref|XP_002307023.1| predicted protein [Populus trichocarpa] gi|222856472|gb|EEE94019.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/161 (88%), Positives = 154/161 (95%), Gaps = 1/161 (0%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKLNRPTGHRMSMLRT+VSQL+KHERIETTVAKAKE+RRLADNMVQLGKEGSLCAA
Sbjct: 1   MTKFRKLNRPTGHRMSMLRTLVSQLIKHERIETTVAKAKEIRRLADNMVQLGKEGSLCAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENEL 120
           RRAAAFVRGDDVIHKLF+E+AYRYKDRAGGYTR+LR+RIRVGDAAPMAYI+ F+DRENEL
Sbjct: 61  RRAAAFVRGDDVIHKLFSEMAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIE-FIDRENEL 119

Query: 121 RQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI 161
           RQSKP  PQPP RA LDPWTRSRLT+ FAPPK+EKSSD EI
Sbjct: 120 RQSKPPTPQPPQRAPLDPWTRSRLTRQFAPPKEEKSSDPEI 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424850|ref|NP_568992.1| large subunit ribosomal protein L17 [Arabidopsis thaliana] gi|107738052|gb|ABF83622.1| At5g64650 [Arabidopsis thaliana] gi|332010549|gb|AED97932.1| large subunit ribosomal protein L17 [Arabidopsis thaliana]

 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 150/161 (93%), Gaps = 1/161 (0%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RP GHRMSMLRTMVSQLV+HERIETTV KAKEVRRLADNM+QLGKEGSL AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENEL 120
           RRAA FVRGDDV+HK+FTELA+RYKDRAGGYTR+LR+RIRVGDAAPMAYI+ F+DRENEL
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIE-FIDRENEL 119

Query: 121 RQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI 161
           RQSKPA PQPPPR  LDPW RSRLT+ +APPK+EK+SD+++
Sbjct: 120 RQSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416086|ref|NP_568216.1| Ribosomal protein L17 family protein [Arabidopsis thaliana] gi|21592350|gb|AAM64301.1| ribsomal protein-like [Arabidopsis thaliana] gi|27808520|gb|AAO24540.1| At5g09770 [Arabidopsis thaliana] gi|110736202|dbj|BAF00072.1| ribsomal protein - like [Arabidopsis thaliana] gi|332004061|gb|AED91444.1| Ribosomal protein L17 family protein [Arabidopsis thaliana]

 Score =  283 bits (723), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/161 (84%), Positives = 147/161 (91%), Gaps = 1/161 (0%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RP GHRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNM+QLGKEGSL AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENEL 120
           RRAA FVRGDDV+HK+FTELA+RYKDRAGGYTRLLR+RIRVGDAAPMAYI+ F+DRENEL
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIE-FIDRENEL 119

Query: 121 RQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI 161
           RQSKPA PQPP R  LDPW RSRLT+ FAPPK+EK  D+E+
Sbjct: 120 RQSKPATPQPPQRVPLDPWERSRLTRQFAPPKEEKIPDSEL 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21555473|gb|AAM63867.1| 50S ribosomal protein L17 [Arabidopsis thaliana]

 Score =  282 bits (722), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RP GHRMSMLRTMVSQLV+HERIETTV KA EVRRLADNM+QLGKEGSL AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAIEVRRLADNMIQLGKEGSLAAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENEL 120
           RRAA FVRGDDV+HK+FTELA+RYKDRAGGYTR+LR+RIRVGDAAPMAYI+ F+DRENEL
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIE-FIDRENEL 119

Query: 121 RQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI 161
           RQSKPA PQPPPR  LDPW RSRLT+ +APPK+EK+SD+++
Sbjct: 120 RQSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552384|ref|XP_002517236.1| ribosomal protein L17, putative [Ricinus communis] gi|223543607|gb|EEF45136.1| ribosomal protein L17, putative [Ricinus communis]

 Score =  279 bits (713), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 140/161 (86%), Positives = 152/161 (94%), Gaps = 1/161 (0%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL+RPTGHRMS+LRTMVSQLVKHERIETT+AKAKE+RRLADNMVQLGKEGSLCAA
Sbjct: 1   MTKFRKLSRPTGHRMSLLRTMVSQLVKHERIETTIAKAKEIRRLADNMVQLGKEGSLCAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENEL 120
           RRAAAFVRGDDV+HKLFTELAYRYKDR GGYTRLLR+RIRVGDAAPMAYI+ F+DRENEL
Sbjct: 61  RRAAAFVRGDDVLHKLFTELAYRYKDREGGYTRLLRTRIRVGDAAPMAYIE-FIDRENEL 119

Query: 121 RQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI 161
           R+SKP  PQPP R  LDPWTRSRL+K FAPPK+EKSS+ EI
Sbjct: 120 RKSKPPTPQPPQRDPLDPWTRSRLSKQFAPPKEEKSSEPEI 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723995|ref|NP_001237810.1| uncharacterized protein LOC100305861 [Glycine max] gi|255626807|gb|ACU13748.1| unknown [Glycine max]

 Score =  278 bits (710), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 135/157 (85%), Positives = 146/157 (92%), Gaps = 1/157 (0%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEGS  AA
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSQHAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENEL 120
           R+AA+FVRGDDVIHKLFTELAYRYKDRAGGYTRLLR+RIRVGDAAPMAYI+ F+DRENEL
Sbjct: 61  RQAASFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIE-FIDRENEL 119

Query: 121 RQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSS 157
           RQ+K   PQPP RA LDPWTRSRL++ FAPPK++KS 
Sbjct: 120 RQAKAPTPQPPQRAPLDPWTRSRLSRQFAPPKEDKSG 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2174804	160	AT5G64650 [Arabidopsis thalian	0.993	1.0	0.832	2.1e-70
TAIR|locus:2144821	160	AT5G09770 [Arabidopsis thalian	0.993	1.0	0.844	8.9e-70
TIGR_CMR|GSU_2830	175	GSU_2830 "ribosomal protein L1	0.770	0.708	0.488	5e-28
TIGR_CMR|SO_0257	131	SO_0257 "ribosomal protein L17	0.664	0.816	0.532	3.6e-25
TIGR_CMR|SPO_0512	140	SPO_0512 "ribosomal protein L1	0.701	0.807	0.491	1.2e-24
UNIPROTKB|P0AG44	127	rplQ "50S ribosomal subunit pr	0.708	0.897	0.478	1.4e-23
TIGR_CMR|CPS_0627	134	CPS_0627 "ribosomal protein L1	0.689	0.828	0.508	2.3e-23
UNIPROTKB|Q9KP09	128	rplQ "50S ribosomal protein L1	0.689	0.867	0.491	1.3e-22
TIGR_CMR|VC_2570	128	VC_2570 "ribosomal protein L17	0.689	0.867	0.491	1.3e-22
DICTYBASE|DDB_G0281435	182	mrpl17 "ribosomal protein L17,	0.714	0.631	0.474	1.6e-22

TAIR|locus:2174804 AT5G64650 [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 134/161 (83%), Positives = 150/161 (93%)

Query:     1 MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
             MTKFRKL RP GHRMSMLRTMVSQLV+HERIETTV KAKEVRRLADNM+QLGKEGSL AA
Sbjct:     1 MTKFRKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAA 60

Query:    61 RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENEL 120
             RRAA FVRGDDV+HK+FTELA+RYKDRAGGYTR+LR+RIRVGDAAPMAYI+ F+DRENEL
Sbjct:    61 RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIE-FIDRENEL 119

Query:   121 RQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI 161
             RQSKPA PQPPPR  LDPW RSRLT+ +APPK+EK+SD+++
Sbjct:   120 RQSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 160

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2144821 AT5G09770 [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 136/161 (84%), Positives = 147/161 (91%)

Query:     1 MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
             MTKFRKL RP GHRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNM+QLGKEGSL AA
Sbjct:     1 MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAA 60

Query:    61 RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENEL 120
             RRAA FVRGDDV+HK+FTELA+RYKDRAGGYTRLLR+RIRVGDAAPMAYI+ F+DRENEL
Sbjct:    61 RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIE-FIDRENEL 119

Query:   121 RQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI 161
             RQSKPA PQPP R  LDPW RSRLT+ FAPPK+EK  D+E+
Sbjct:   120 RQSKPATPQPPQRVPLDPWERSRLTRQFAPPKEEKIPDSEL 160

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TIGR_CMR|GSU_2830 GSU_2830 "ribosomal protein L17" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 61/125 (48%), Positives = 89/125 (71%)

Query:     5 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
             R+L R T HR++M R MV+ L  HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct:     8 RRLGRTTSHRIAMFRNMVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAA 67

Query:    65 AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDR-ENELRQS 123
             +++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD AP++ I+   ++ E ++++S
Sbjct:    68 SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDCAPLSVIELVEEQFEKKVKKS 127

Query:   124 KPAVP 128
             KP  P
Sbjct:   128 KPTAP 132

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|SO_0257 SO_0257 "ribosomal protein L17" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 57/107 (53%), Positives = 76/107 (71%)

Query:     5 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
             R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A 
Sbjct:     8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAF 67

Query:    65 AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYID 111
             A  R  +V+ KLFTEL  RY++R GGYTR+L+  +R GD APMAYI+
Sbjct:    68 ARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIE 114

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SPO_0512 SPO_0512 "ribosomal protein L17" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 56/114 (49%), Positives = 79/114 (69%)

Query:     4 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
             +R+LNR   HR ++   M   L++HE+I+TT+ KAKE+R + + ++ LGK G L A R+A
Sbjct:     7 YRRLNRTHEHRKALFANMAGSLIEHEQIKTTLPKAKELRPIVEKLITLGKRGDLHARRQA 66

Query:    64 AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRE 117
             AA ++ D  + KLF  LA RYKDR GGY R+L++  R GD APMA I+ FVDR+
Sbjct:    67 AAQLKEDKDVAKLFDVLAERYKDRQGGYVRILKAGFRYGDMAPMAIIE-FVDRD 119

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

UNIPROTKB|P0AG44 rplQ "50S ribosomal subunit protein L17" [Escherichia coli K-12 (taxid:83333)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 55/115 (47%), Positives = 76/115 (66%)

Query:     5 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
             R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A 
Sbjct:     8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAF 67

Query:    65 AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENE 119
             A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYI+  VDR  +
Sbjct:    68 ARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE-LVDRSEK 121

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

TIGR_CMR|CPS_0627 CPS_0627 "ribosomal protein L17" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 57/112 (50%), Positives = 75/112 (66%)

Query:     5 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
             R+LNR + HR +M R M S LVKH  I+TTVAKAKE+RR+ + ++ L K  S+   R A 
Sbjct:     8 RQLNRNSSHRQAMFRNMASSLVKHGVIKTTVAKAKELRRVLEPLITLAKTDSVANRRLAF 67

Query:    65 AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDR 116
             A  +  +V+  LF EL  RY++R GGYTR+L+   R GD APMAYI+  VDR
Sbjct:    68 ARTQDKEVVGILFNELGARYQERPGGYTRILKCGFRTGDKAPMAYIE-LVDR 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

UNIPROTKB|Q9KP09 rplQ "50S ribosomal protein L17" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 55/112 (49%), Positives = 74/112 (66%)

Query:     5 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
             R+LNR + HR +M   M S LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A 
Sbjct:     8 RQLNRNSSHRKAMFSNMASSLVRHEVIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAF 67

Query:    65 AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDR 116
             A  R ++V+ KLF EL  R+  R GGYTR+L+   R GD APMAYI+  VDR
Sbjct:    68 ARTRDNEVVAKLFNELGPRFAARQGGYTRILKCGFRAGDKAPMAYIE-LVDR 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2570 VC_2570 "ribosomal protein L17" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 55/112 (49%), Positives = 74/112 (66%)

Query:     5 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
             R+LNR + HR +M   M S LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A 
Sbjct:     8 RQLNRNSSHRKAMFSNMASSLVRHEVIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAF 67

Query:    65 AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDR 116
             A  R ++V+ KLF EL  R+  R GGYTR+L+   R GD APMAYI+  VDR
Sbjct:    68 ARTRDNEVVAKLFNELGPRFAARQGGYTRILKCGFRAGDKAPMAYIE-LVDR 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

DICTYBASE|DDB_G0281435 mrpl17 "ribosomal protein L17, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/118 (47%), Positives = 80/118 (67%)

Query:     3 KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             K  KL R + HRM MLRTMV+QL++HERI+TT+AKAK +R+ AD ++ + K  +  +   
Sbjct:     6 KLAKLGRESHHRMLMLRTMVTQLIRHERIKTTLAKAKALRKEADRIITIAKRNTRLSHSL 65

Query:    63 AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENEL 120
               ++V    VI KLF EL  R+ DR GGYTR+L++  R+ D + MAYI+ +V  EN+L
Sbjct:    66 VYSYVTDKQVIPKLFKELRLRFGDRPGGYTRVLKAGSRLSDRSKMAYIE-YV--ENDL 120

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1KM34	RL17_SHEWM	No assigned EC number	0.5233	0.6645	0.8106	yes	no
A0KRQ0	RL17_SHESA	No assigned EC number	0.5327	0.6645	0.8167	yes	no
Q0I079	RL17_SHESR	No assigned EC number	0.5327	0.6645	0.8167	yes	no
A6WHV4	RL17_SHEB8	No assigned EC number	0.5233	0.6645	0.8167	yes	no
Q18CI8	RL17_CLOD6	No assigned EC number	0.5045	0.6894	0.9823	yes	no
B8CNF9	RL17_SHEPW	No assigned EC number	0.5046	0.6645	0.8230	yes	no
A1ALW8	RL17_PELPD	No assigned EC number	0.5420	0.6645	0.8425	yes	no
A8G1C4	RL17_SHESH	No assigned EC number	0.5140	0.6645	0.8106	yes	no
B6IRT1	RL17_RHOCS	No assigned EC number	0.5043	0.7080	0.8201	yes	no
B8G1Z5	RL17_DESHD	No assigned EC number	0.5370	0.6708	0.9642	yes	no
A4YBV7	RL17_SHEPC	No assigned EC number	0.5327	0.6645	0.8167	yes	no
A9KWC7	RL17_SHEB9	No assigned EC number	0.5233	0.6645	0.8167	yes	no
A0L5Z9	RL17_MAGSM	No assigned EC number	0.5350	0.6956	0.8888	yes	no
C6E4M9	RL17_GEOSM	No assigned EC number	0.5140	0.6645	0.6369	yes	no
Q3SSU1	RL17_NITWN	No assigned EC number	0.5130	0.7080	0.8260	yes	no
A3DA46	RL17_SHEB5	No assigned EC number	0.5233	0.6645	0.8167	yes	no
A3Q9A8	RL17_SHELP	No assigned EC number	0.5233	0.6645	0.8230	yes	no
B3E858	RL17_GEOLS	No assigned EC number	0.5420	0.6645	0.8629	yes	no
A8GZ01	RL17_SHEPA	No assigned EC number	0.5046	0.6645	0.8230	yes	no
Q250K3	RL17_DESHY	No assigned EC number	0.5370	0.6708	0.9642	yes	no
Q8ETV8	RL17_OCEIH	No assigned EC number	0.5221	0.6645	0.9145	yes	no
B0TLY7	RL17_SHEHH	No assigned EC number	0.5140	0.6645	0.8230	yes	no
Q9S0Q7	RL17_SHEVD	No assigned EC number	0.5233	0.6645	0.8167	yes	no
Q2RQY5	RL17_RHORT	No assigned EC number	0.5132	0.6956	0.8	yes	no
Q6AP42	RL17_DESPS	No assigned EC number	0.5140	0.6645	0.8294	yes	no
B6JEX2	RL17_OLICO	No assigned EC number	0.5132	0.6956	0.8057	yes	no
B8EBH9	RL17_SHEB2	No assigned EC number	0.5233	0.6645	0.8167	yes	no
Q0HNR1	RL17_SHESM	No assigned EC number	0.5327	0.6645	0.8167	yes	no
A1REE0	RL17_SHESW	No assigned EC number	0.5327	0.6645	0.8167	yes	no
Q8EK46	RL17_SHEON	No assigned EC number	0.5327	0.6645	0.8167	yes	no
Q1QN05	RL17_NITHX	No assigned EC number	0.5132	0.6956	0.8115	yes	no
Q134V4	RL17_RHOPS	No assigned EC number	0.4732	0.8012	0.9485	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
PRK05591	113	PRK05591, rplQ, 50S ribosomal protein L17; Validat	5e-52
COG0203	116	COG0203, RplQ, Ribosomal protein L17 [Translation,	6e-45
pfam01196	97	pfam01196, Ribosomal_L17, Ribosomal protein L17	6e-44
TIGR00059	112	TIGR00059, L17, ribosomal protein L17	2e-36
PTZ00076	253	PTZ00076, PTZ00076, 60S ribosomal protein L17; Pro	3e-19

>gnl|CDD|235522 PRK05591, rplQ, 50S ribosomal protein L17; Validated

 Score =  161 bits (409), Expect = 5e-52
 Identities = 57/110 (51%), Positives = 77/110 (70%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
             K RKL R + HR +MLR + + L++HERIETT+ KAKE+RR+ + ++ L K+G L A 
Sbjct: 1   RKKGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLHAR 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYI 110
           R+A A +R  + +HKLF E+A RY DR GGYTR+L+   R GD APMA I
Sbjct: 61  RQAFARLRDKEAVHKLFDEIAPRYADRNGGYTRILKLGFRRGDNAPMAII 110

Length = 113

>gnl|CDD|223281 COG0203, RplQ, Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

 Score =  143 bits (362), Expect = 6e-45
 Identities = 55/109 (50%), Positives = 74/109 (67%)

Query: 2   TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAAR 61
            K RKL R + HR +MLR + + L++HERIETT+ KAKE+RR+ + ++ L K+G L   R
Sbjct: 5   KKGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLANRR 64

Query: 62  RAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYI 110
            A A +R  D + KLF E+A RY +R GGYTR+L+   R GD APMA I
Sbjct: 65  LAFARLRDKDAVKKLFDEIAPRYAERNGGYTRILKLGFRRGDNAPMAII 113

Length = 116

>gnl|CDD|216356 pfam01196, Ribosomal_L17, Ribosomal protein L17

 Score =  139 bits (354), Expect = 6e-44
 Identities = 49/94 (52%), Positives = 69/94 (73%)

Query: 17  MLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKL 76
           +LR + + L++HERIETT+AKAKE+R  A+ ++ L K+G L A R+A +F+R  +++ KL
Sbjct: 1   LLRNLATSLIRHERIETTLAKAKELRPYAEKLITLAKKGDLHARRQALSFLRDKELVKKL 60

Query: 77  FTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYI 110
           F ELA RY DR GGYTR+++   R GD APMA I
Sbjct: 61  FDELAPRYADRNGGYTRIIKLGPRRGDNAPMAII 94

Length = 97

>gnl|CDD|129169 TIGR00059, L17, ribosomal protein L17

 Score =  121 bits (305), Expect = 2e-36
 Identities = 53/112 (47%), Positives = 79/112 (70%), Gaps = 1/112 (0%)

Query: 4   FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
           +RKL R + HR ++LR + S L++HE+I+TT+AKAKE+RR+ + ++ L K  +    R A
Sbjct: 2   YRKLGRTSAHRKALLRNLASALIRHEKIKTTLAKAKELRRVVEKLITLAKVDNFNNRREA 61

Query: 64  AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVD 115
            A++R  +++HKLF+E+A RY  R GGYTR+L+   R GDAA MA I+  VD
Sbjct: 62  KAYIRNKEIVHKLFSEIAPRYAQRPGGYTRILKLGPRRGDAAEMAIIE-LVD 112

Eubacterial and mitochondrial. The mitochondrial form, from yeast, contains an additional 110 amino acids C-terminal to the region found by this model [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 112

>gnl|CDD|173371 PTZ00076, PTZ00076, 60S ribosomal protein L17; Provisional

 Score = 81.0 bits (200), Expect = 3e-19
 Identities = 40/123 (32%), Positives = 75/123 (60%), Gaps = 2/123 (1%)

Query: 4   FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
           FR+ +    HR   ++  + +L+++ R+E T+ +AKE+++ A+ ++ L K+ +  +  + 
Sbjct: 19  FRRAHGQPHHRWDSIKNQLDELLRYGRLELTLPRAKELQQYAEELIYLAKKDTPESNLKV 78

Query: 64  AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRS-RIRVGDAAPMAYIDRFVDRENELRQ 122
            + +R      KL+ +    Y+DR   +TR++   R+R+ DAAPMAYI+ FVDR  E+R 
Sbjct: 79  ESMLRTPQGRRKLYEKYVPLYRDRPFFFTRVVNQWRLRLRDAAPMAYIE-FVDRPGEIRP 137

Query: 123 SKP 125
           +KP
Sbjct: 138 AKP 140

Length = 253

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PRK05591	113	rplQ 50S ribosomal protein L17; Validated	100.0
COG0203	116	RplQ Ribosomal protein L17 [Translation, ribosomal	100.0
TIGR00059	112	L17 ribosomal protein L17. Eubacterial and mitocho	100.0
PTZ00076	253	60S ribosomal protein L17; Provisional	100.0
KOG3280	171	consensus Mitochondrial/chloroplast ribosomal prot	100.0
PF01196	97	Ribosomal_L17: Ribosomal protein L17; InterPro: IP	100.0

>PRK05591 rplQ 50S ribosomal protein L17; Validated

Probab=100.00  E-value=1.7e-54  Score=329.11  Aligned_cols=113  Identities=51%  Similarity=0.824  Sum_probs=111.6

Q ss_pred             CCcccCCCCCchHHHHHHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChHHHHHHHHhhcChhHHHHHHHHH
Q 031308            1 MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL   80 (161)
Q Consensus         1 m~~~rkLgR~~~hR~allRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~~rr~a~~~L~d~~~v~KLF~el   80 (161)
                      |++++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+|++|++|+|.+||.|+++++|||++|
T Consensus         1 ~~~~rkl~r~~~hR~allrnl~tsLi~herI~TT~~KAKelr~~aEklIt~aK~~~~~~rR~~~~~L~~~~~v~KLf~~l   80 (113)
T PRK05591          1 RKKGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLHARRQAFARLRDKEAVHKLFDEI   80 (113)
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHHHcCeEEecHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCeEEEEeccCCCCCCCcceeeeccc
Q 031308           81 AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFV  114 (161)
Q Consensus        81 aPRy~~R~GGYTRI~kl~~R~GD~A~maiIE~lV  114 (161)
                      +|||++|+||||||+|+++|.||+||||||| ||
T Consensus        81 apry~~R~GGYTRI~k~~~R~gD~A~ma~iE-lV  113 (113)
T PRK05591         81 APRYADRNGGYTRILKLGFRRGDNAPMAIIE-LV  113 (113)
T ss_pred             HHHhCcCCCCeEEEEECCCCCCCCCCeEEEE-eC
Confidence            9999999999999999999999999999999 87

>COG0203 RplQ Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-54  Score=329.32  Aligned_cols=112  Identities=50%  Similarity=0.807  Sum_probs=110.5

Q ss_pred             CcccCCCCCchHHHHHHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChHHHHHHHHhhcChhHHHHHHHHHH
Q 031308            2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA   81 (161)
Q Consensus         2 ~~~rkLgR~~~hR~allRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~~rr~a~~~L~d~~~v~KLF~ela   81 (161)
                      ++++||||+++||++|||||++|||+||+|+||++||||+|++||+|||+||+|+++++|+|.++|.|+++|+|||++|+
T Consensus         5 ~~~rkl~rtsshR~amlrnla~sLi~he~I~TT~~KAKelr~~vEkLITlaK~~~l~~RR~a~~~l~d~~~v~kLF~~ia   84 (116)
T COG0203           5 KKGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLANRRLAFARLRDKDAVKKLFDEIA   84 (116)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHcCceeecHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHcccHHHHHHHHHHhC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeEEEEeccCCCCCCCcceeeeccc
Q 031308           82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFV  114 (161)
Q Consensus        82 PRy~~R~GGYTRI~kl~~R~GD~A~maiIE~lV  114 (161)
                      |||++|+||||||+|+|+|.||+||||||| ||
T Consensus        85 pry~~R~GGYtRIlK~g~R~GD~A~maiiE-lV  116 (116)
T COG0203          85 PRYAERNGGYTRILKLGFRRGDNAPMAIIE-LV  116 (116)
T ss_pred             hhhcCCCCCeeEEEecCCCCCCCCceEEEE-eC
Confidence            999999999999999999999999999999 87

>TIGR00059 L17 ribosomal protein L17

Probab=100.00  E-value=2.9e-54  Score=327.44  Aligned_cols=112  Identities=47%  Similarity=0.832  Sum_probs=110.3

Q ss_pred             cccCCCCCchHHHHHHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChHHHHHHHHhhcChhHHHHHHHHHHH
Q 031308            3 KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAY   82 (161)
Q Consensus         3 ~~rkLgR~~~hR~allRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~~rr~a~~~L~d~~~v~KLF~elaP   82 (161)
                      .++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+|++|++|++.+||.|+++|+|||++|+|
T Consensus         1 ~~~klgr~~~hR~allrnl~tsLi~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rR~~~~~l~~~~~v~KLf~~lap   80 (112)
T TIGR00059         1 SYRKLGRTSAHRKALLRNLASALIRHEKIKTTLAKAKELRRVVEKLITLAKVDNFNNRREAKAYIRNKEIVHKLFSEIAP   80 (112)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCeEEECHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCeEEEEeccCCCCCCCcceeeecccC
Q 031308           83 RYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVD  115 (161)
Q Consensus        83 Ry~~R~GGYTRI~kl~~R~GD~A~maiIE~lVd  115 (161)
                      ||++|+||||||+|+++|.||+||||||| |||
T Consensus        81 ry~~R~GGYTRI~kl~~R~gD~A~maiiE-lVd  112 (112)
T TIGR00059        81 RYAQRPGGYTRILKLGPRRGDAAEMAIIE-LVD  112 (112)
T ss_pred             HhCCCCCCeEEEEECCCCCCCCCCeEEEE-ecC
Confidence            99999999999999999999999999999 996

Eubacterial and mitochondrial. The mitochondrial form, from yeast, contains an additional 110 amino acids C-terminal to the region found by this model.

>PTZ00076 60S ribosomal protein L17; Provisional

Probab=100.00  E-value=9.3e-51  Score=341.49  Aligned_cols=127  Identities=31%  Similarity=0.541  Sum_probs=122.7

Q ss_pred             cccCCCCCchHHHHHHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChHHHHHHHHhhcChhHHHHHHHHHHH
Q 031308            3 KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAY   82 (161)
Q Consensus         3 ~~rkLgR~~~hR~allRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~~rr~a~~~L~d~~~v~KLF~elaP   82 (161)
                      +++||||+++||++|||||+||||+||||+||++||||+|+|||+|||+||+|++|++|+|.++|.|+++|+|||++|+|
T Consensus        18 ~~rKLgR~ssHR~AlLRNLvtsLI~hERIeTTlaKAKELR~~AEKLITlAKk~tl~sRR~a~s~L~d~~av~KLF~eLAP   97 (253)
T PTZ00076         18 LFRRAHGQPHHRWDSIKNQLDELLRYGRLELTLPRAKELQQYAEELIYLAKKDTPESNLKVESMLRTPQGRRKLYEKYVP   97 (253)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHcCcEEecHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCeEEEEec-cCCCCCCCcceeeecccCCchhhccCCCCCCCC
Q 031308           83 RYKDRAGGYTRLLRS-RIRVGDAAPMAYIDRFVDRENELRQSKPAVPQP  130 (161)
Q Consensus        83 Ry~~R~GGYTRI~kl-~~R~GD~A~maiIE~lVd~~~e~~~~~~~~~~~  130 (161)
                      ||++|+||||||+|+ ++|.||+||||||| |||++.++++++|++...
T Consensus        98 RY~dR~GGYTRIlK~~g~R~GD~ApMAiIE-LVd~p~e~r~A~pvg~d~  145 (253)
T PTZ00076         98 LYRDRPFFFTRVVNQWRLRLRDAAPMAYIE-FVDRPGEIRPAKPVGFDK  145 (253)
T ss_pred             HhcCCCCCeeEEEeCCCCCCCCCCCEEEEE-eccCcCccccccccchhH
Confidence            999999999999997 69999999999999 999999999998886544

>KOG3280 consensus Mitochondrial/chloroplast ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-49  Score=316.32  Aligned_cols=150  Identities=52%  Similarity=0.794  Sum_probs=140.6

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHh-hcCChHHH--HHHHHhhcChhHHHHHHHHHH
Q 031308            5 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLG-KEGSLCAA--RRAAAFVRGDDVIHKLFTELA   81 (161)
Q Consensus         5 rkLgR~~~hR~allRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~A-K~g~~~~r--r~a~~~L~d~~~v~KLF~ela   81 (161)
                      .|+||++.||.+|||||||+||+||||+|||+||||+|+|||+|||+| |.|+++++  +++.+||..+++++|||+||+
T Consensus        15 ~Klgr~~~~R~~lLR~lvt~LvkHErIe~t~ara~Ear~~aEklIt~~~k~g~~~~~~~~~a~~~l~ekdli~KlF~vl~   94 (171)
T KOG3280|consen   15 LKLGRPPAHRLALLRNLVTQLVKHERIETTWARAKEARRYAEKLITLGKKAGSLHERTARMADGWLREKDLLHKLFTVLA   94 (171)
T ss_pred             hhcCCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCcHhHHHHHHHhcccccchHHHHHHHHhc
Confidence            499999999999999999999999999999999999999999999999 78999988  999999999999999999999


Q ss_pred             HhhccCCCCeEEEEeccCCCCCCCcceeeecccCCchhhccCCCCCCCCCCCCCCCHHHHHhhhhhcCCCCCCCCCcc
Q 031308           82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENELRQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDA  159 (161)
Q Consensus        82 PRy~~R~GGYTRI~kl~~R~GD~A~maiIE~lVd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (161)
                      |||++|+|||||++|+++|.||+||||||| |++++    .....++-+.++.+|.+|....+.++|+||++|+-.+.
T Consensus        95 pRY~dr~ggYTRllrlppr~~d~apmavlE-~~Gn~----~p~~~a~~p~~r~~lh~vll~~l~r~~~~~~~e~l~~~  167 (171)
T KOG3280|consen   95 PRYKDRNGGYTRLLRLPPRRGDRAPMAVLE-LVGNP----LPQQAADRPDTRVNLHKVLLFRLLREFRPPKEEKLDDS  167 (171)
T ss_pred             hhhccCCCCceehhccCcccccccCceeee-ecCCc----cccccCCCchhhhhhHHHHHHHHHHHhccchhhcccCc
Confidence            999999999999999999999999999999 99865    34566677788999999999999999999999986553

>PF01196 Ribosomal_L17: Ribosomal protein L17; InterPro: IPR000456 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.6e-47  Score=283.83  Aligned_cols=97  Identities=53%  Similarity=0.878  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChHHHHHHHHhhcChhHHHHHHHHHHHhhccCCCCeEEEEe
Q 031308           17 MLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLR   96 (161)
Q Consensus        17 llRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~~rr~a~~~L~d~~~v~KLF~elaPRy~~R~GGYTRI~k   96 (161)
                      |||||+|+||+||||+||++||||+|+|||+|||+||+|++|+++++.+||.|+++++|||++|+|||++|+||||||+|
T Consensus         1 llrnlvt~Li~herI~TT~~KAke~r~~aErlIt~ak~~~~~~~r~~~~~l~~~~~v~KLf~~l~pRy~~r~GgYTRi~k   80 (97)
T PF01196_consen    1 LLRNLVTSLIRHERIETTLAKAKELRPYAERLITLAKKGDLHARRQALSWLRDKELVKKLFKELAPRYADRNGGYTRIIK   80 (97)
T ss_dssp             HHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHCSSSHHHHHHHHTTHHHHTTTSSS-SEEEEE
T ss_pred             ChHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHHHccCCCCeEEEEe
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCcceeeeccc
Q 031308           97 SRIRVGDAAPMAYIDRFV  114 (161)
Q Consensus        97 l~~R~GD~A~maiIE~lV  114 (161)
                      +++|.||+||||||| ||
T Consensus        81 l~~R~gD~A~maiiE-lV   97 (97)
T PF01196_consen   81 LGPRRGDAAPMAIIE-LV   97 (97)
T ss_dssp             EEECSSSTCEEEEEE-ET
T ss_pred             CCCCCCCCCCEEEEE-eC
Confidence            999999999999999 97

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L17 is one of the proteins from the large ribosomal subunit. Bacterial L17 is a protein of 120 to 130 amino-acid residues while yeast YmL8 is twice as large (238 residues). The N-terminal half of YmL8 is colinear with the sequence of L17 from Escherichia coli.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3F1F_R 1VSP_L 3PYV_N 3PYR_N 3PYO_N 1VSA_L 3MS1_N 3F1H_R 3D5B_R 3MRZ_N ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	161
1p85_L	127	Real Space Refined Coordinates Of The 50s Subunit F		1e-24
3fik_N	120	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		2e-24
3bbo_P	205	Homology Model For The Spinach Chloroplast 50s Subu		4e-24
2gya_L	114	Structure Of The 50s Subunit Of A Pre-Translocation		4e-24
3fin_R	117	T. Thermophilus 70s Ribosome In Complex With Mrna,		4e-19
1gd8_A	118	The Crystal Structure Of Bacteria-Specific L17 Ribo		4e-19
1pnu_L	114	Crystal Structure Of A Streptomycin Dependent Ribos		1e-15
1nkw_L	116	Crystal Structure Of The Large Ribosomal Subunit Fr		1e-15
2ftc_J	116	Structural Model For The Large Subunit Of The Mamma		3e-14
2cqm_A	122	Solution Structure Of The Mitochondrial Ribosomal P		6e-13

>pdb|1P85|L Chain L, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 127

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A 
Sbjct: 8   RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAF 67
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDR 116
           A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYI+  VDR
Sbjct: 68  ARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE-LVDR 118

>pdb|3FIK|N Chain N, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 120

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A 
Sbjct: 8   RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAF 67
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDR 116
           A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYI+  VDR
Sbjct: 68  ARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE-LVDR 118

>pdb|3BBO|P Chain P, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 205

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/109 (47%), Positives = 74/109 (67%)
Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
           K  KLNRP   R ++LR + +QL+KH RI+TT A+A+ VR+  D M+ + K+GSL   R+
Sbjct: 95  KVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQ 154
Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYID 111
           A  F+    ++H LF E+  RY +R GGYTR++R+  R GD APMAYI+
Sbjct: 155 ALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIE 203

>pdb|2GYA|L Chain L, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 114

Iteration: 1
 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 72/107 (67%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A 
Sbjct: 6   RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAF 65
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYID 111
           A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYI+
Sbjct: 66  ARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE 112

>pdb|3FIN|R Chain R, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 117

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           RKLNR + HR+++ R     L+ H RI TTV KAKE+R   D+++ L K G L A R   
Sbjct: 7   RKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVL 66
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLR-SRIRVGDAAPMAYID 111
             ++   ++ KLF E+A RY+DR GGYTR+L+ +  R GD AP+A ++
Sbjct: 67  RDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVE 114

>pdb|1GD8|A Chain A, The Crystal Structure Of Bacteria-Specific L17 Ribosomal Protein. Length = 118

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           RKLNR + HR+++ R     L+ H RI TTV KAKE+R   D+++ L K G L A R   
Sbjct: 8   RKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVL 67
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLR-SRIRVGDAAPMAYID 111
             ++   ++ KLF E+A RY+DR GGYTR+L+ +  R GD AP+A ++
Sbjct: 68  RDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVE 115

>pdb|1PNU|L Chain L, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 114

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 64/107 (59%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           RKLNR +  R+++ R   + L++  RI+TT+ KAKE+R   + ++   K G L + R  A
Sbjct: 6   RKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVA 65
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYID 111
             +   DV+ K+  E+A +Y +R GGYTR+LR   R GD   MA I+
Sbjct: 66  QDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIE 112

>pdb|1NKW|L Chain L, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 116

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 64/107 (59%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           RKLNR +  R+++ R   + L++  RI+TT+ KAKE+R   + ++   K G L + R  A
Sbjct: 8   RKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVA 67
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYID 111
             +   DV+ K+  E+A +Y +R GGYTR+LR   R GD   MA I+
Sbjct: 68  QDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIE 114

>pdb|2FTC|J Chain J, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 116

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 4   FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLC--AAR 61
           FR++      R+ +LR +++ LV+HERIE   A+  E+R  A+ ++  GK G     A R
Sbjct: 5   FRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMR 64
Query: 62  RAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYID 111
            A  ++   D+I KLF  LA RYKD+ GGYTR+L+   R  D A MA I+
Sbjct: 65  MADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIE 114

>pdb|2CQM|A Chain A, Solution Structure Of The Mitochondrial Ribosomal Protein L17 Isolog Length = 122

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 16  SMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLC--AARRAAAFVRGDDVI 73
            +LR +++ LV+HERIE   A+  E+R  A+ ++  GK G     A R A  ++   D+I
Sbjct: 7   GLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLI 66
Query: 74  HKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYID 111
            KLF  LA RYKD+ GGYTR+L+   R  D A MA I+
Sbjct: 67  PKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIE 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
3r8s_N	120	50S ribosomal protein L17; protein biosynthesis, R	7e-53
2zjr_K	116	50S ribosomal protein L17; ribosome, large ribosom	1e-48
1gd8_A	118	50S ribosomal protein L17; two domains, ribosomal	7e-48
3bbo_P	205	Ribosomal protein L17; large ribosomal subunit, sp	2e-47
2cqm_A	122	Ribosomal protein L17 isolog; alpha and beta (A+B)	6e-46

>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N 2i2v_N ... Length = 120

 Score =  163 bits (414), Expect = 7e-53
 Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R 
Sbjct: 6   SGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRL 65

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDR 116
           A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYI+  VDR
Sbjct: 66  AFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE-LVDR 118

>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O Length = 116

 Score =  151 bits (385), Expect = 1e-48
 Identities = 42/108 (38%), Positives = 63/108 (58%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             RKLNR +  R+++ R   + L++  RI+TT+ KAKE+R   + ++   K G L + R 
Sbjct: 6   AGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRL 65

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYI 110
            A  +   DV+ K+  E+A +Y +R GGYTR+LR   R GD   MA I
Sbjct: 66  VAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALI 113

>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ... Length = 118

 Score =  149 bits (380), Expect = 7e-48
 Identities = 49/114 (42%), Positives = 70/114 (61%), Gaps = 2/114 (1%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             RKLNR + HR+++ R     L+ H RI TTV KAKE+R   D+++ L K G L A R 
Sbjct: 6   SGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRL 65

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRS-RIRVGDAAPMAYIDRFVD 115
               ++   ++ KLF E+A RY+DR GGYTR+L+    R GD AP+A ++  V+
Sbjct: 66  VLRDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVE-LVE 118

>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Length = 205

 Score =  151 bits (384), Expect = 2e-47
 Identities = 52/109 (47%), Positives = 73/109 (66%)

Query: 2   TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAAR 61
            K  KLNRP   R ++LR + +QL+KH RI+TT A+A+ VR+  D M+ + K+GSL   R
Sbjct: 94  RKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRR 153

Query: 62  RAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYI 110
           +A  F+    ++H LF E+  RY +R GGYTR++R+  R GD APMAYI
Sbjct: 154 QALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYI 202

>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S Length = 122

 Score =  145 bits (368), Expect = 6e-46
 Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 3/109 (2%)

Query: 11  TGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCA--ARRAAAFVR 68
           +     +LR +++ LV+HERIE   A+  E+R  A+ ++  GK G       R A  ++ 
Sbjct: 2   SSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLT 61

Query: 69  GDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRE 117
             D+I KLF  LA RYKD+ GGYTR+L+   R  D A MA I+ +    
Sbjct: 62  EKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIE-YKGNC 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
3r8s_N	120	50S ribosomal protein L17; protein biosynthesis, R	100.0
1gd8_A	118	50S ribosomal protein L17; two domains, ribosomal	100.0
2zjr_K	116	50S ribosomal protein L17; ribosome, large ribosom	100.0
3bbo_P	205	Ribosomal protein L17; large ribosomal subunit, sp	100.0
2cqm_A	122	Ribosomal protein L17 isolog; alpha and beta (A+B)	100.0

>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...

Probab=100.00  E-value=1.8e-56  Score=341.99  Aligned_cols=115  Identities=48%  Similarity=0.781  Sum_probs=113.3

Q ss_pred             CcccCCCCCchHHHHHHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChHHHHHHHHhhcChhHHHHHHHHHH
Q 031308            2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA   81 (161)
Q Consensus         2 ~~~rkLgR~~~hR~allRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~~rr~a~~~L~d~~~v~KLF~ela   81 (161)
                      ++++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+|++|++|+|.+||.|+++|+|||++|+
T Consensus         5 ~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~ela   84 (120)
T 3r8s_N            5 KSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELG   84 (120)
T ss_dssp             CCCCCTTSCHHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHSSCCHHHHHHHHHTHH
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeEEEEeccCCCCCCCcceeeecccCCc
Q 031308           82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRE  117 (161)
Q Consensus        82 PRy~~R~GGYTRI~kl~~R~GD~A~maiIE~lVd~~  117 (161)
                      |||++|+||||||+|+++|.||+||||||| |||++
T Consensus        85 pry~~R~GGYTRI~K~~~R~GD~A~maiiE-LVd~~  119 (120)
T 3r8s_N           85 PRFASRAGGYTRILKCGFRAGDNAPMAYIE-LVDRS  119 (120)
T ss_dssp             HHTTTCCSCCEEEEEEEECTTTCCEEEEEE-ESSCC
T ss_pred             HHhcCCCCCeEEEEECCCCCCCCcCeEEEE-EecCC
Confidence            999999999999999999999999999999 99974

>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...

Probab=100.00  E-value=5.3e-56  Score=338.50  Aligned_cols=113  Identities=43%  Similarity=0.713  Sum_probs=103.4

Q ss_pred             CcccCCCCCchHHHHHHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChHHHHHHHHhhcChhHHHHHHHHHH
Q 031308            2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA   81 (161)
Q Consensus         2 ~~~rkLgR~~~hR~allRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~~rr~a~~~L~d~~~v~KLF~ela   81 (161)
                      ++++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+|++|++|+|.+||.|+++|+|||++|+
T Consensus         5 ~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF~~ia   84 (118)
T 1gd8_A            5 KSGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIA   84 (118)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHH
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeEEEEecc-CCCCCCCcceeeecccC
Q 031308           82 YRYKDRAGGYTRLLRSR-IRVGDAAPMAYIDRFVD  115 (161)
Q Consensus        82 PRy~~R~GGYTRI~kl~-~R~GD~A~maiIE~lVd  115 (161)
                      |||++|+||||||+|++ +|.||+||||||| |||
T Consensus        85 pry~~R~GGYTRI~K~~~~R~GD~A~maiiE-LVd  118 (118)
T 1gd8_A           85 PRYRDRQGGYTRVLKLAERRRGDGAPLALVE-LVE  118 (118)
T ss_dssp             HHTSSCCSCCEEEEEEEEECTTTCCEEEEEE-ECC
T ss_pred             HHhCCCCCCeEEEEECCCCCCCCCCCeEEEE-ecC
Confidence            99999999999999999 9999999999999 996

>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O

Probab=100.00  E-value=9.8e-56  Score=336.18  Aligned_cols=112  Identities=38%  Similarity=0.635  Sum_probs=109.8

Q ss_pred             CcccCCCCCchHHHHHHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChHHHHHHHHhhcChhHHHHHHHHHH
Q 031308            2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA   81 (161)
Q Consensus         2 ~~~rkLgR~~~hR~allRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~~rr~a~~~L~d~~~v~KLF~ela   81 (161)
                      ++++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+|++|++|+|.+||.|+++|+|||++|+
T Consensus         5 ~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~~ia   84 (116)
T 2zjr_K            5 KAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVA   84 (116)
T ss_dssp             CCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHH
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeEEEEeccCCCCCCCcceeeeccc
Q 031308           82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFV  114 (161)
Q Consensus        82 PRy~~R~GGYTRI~kl~~R~GD~A~maiIE~lV  114 (161)
                      |||+||+||||||+|+++|.||+||||||| ||
T Consensus        85 pry~~R~GGYTRI~K~~~R~GD~A~maiiE-lV  116 (116)
T 2zjr_K           85 PKYAERPGGYTRILRVGTRRGDGVTMALIE-LV  116 (116)
T ss_dssp             HHTTTSCSCCCEEEECCCCTTTCCCEEEEE-C-
T ss_pred             HHhCCCCCCeeEEEECCCCCCCCCceEEEE-eC
Confidence            999999999999999999999999999999 87

>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2

Probab=100.00  E-value=1.4e-52  Score=342.98  Aligned_cols=112  Identities=47%  Similarity=0.823  Sum_probs=110.5

Q ss_pred             CcccCCCCCchHHHHHHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChHHHHHHHHhhcChhHHHHHHHHHH
Q 031308            2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA   81 (161)
Q Consensus         2 ~~~rkLgR~~~hR~allRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~~rr~a~~~L~d~~~v~KLF~ela   81 (161)
                      ++++||||+++||++|||||+|+||+||+|+||++||||+|+|||+|||+||+|++|++|+|.+||+|+++|+|||+||+
T Consensus        94 ~~~rKLgRtssHRkAmLRNLvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaRR~a~~~L~dk~~V~KLF~eia  173 (205)
T 3bbo_P           94 RKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVP  173 (205)
T ss_dssp             CCSCCTTSCGGGHHHHHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHHHHHTTSSG
T ss_pred             cCCCCCCCChHHHHHHHHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeEEEEeccCCCCCCCcceeeeccc
Q 031308           82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFV  114 (161)
Q Consensus        82 PRy~~R~GGYTRI~kl~~R~GD~A~maiIE~lV  114 (161)
                      |||+||+||||||+|+++|.||+||||||| ||
T Consensus       174 PRY~dR~GGYTRIlKlg~R~GD~ApMAiIE-LV  205 (205)
T 3bbo_P          174 DRYGERNGGYTRIIRTLPRRGDNAPMAYIE-LV  205 (205)
T ss_dssp             GGGSSCCSCCEECCBCSCCSSSCCCCEEEE-EC
T ss_pred             HHhCCCCCCeeEEEECCCCCCCCcceEEEE-eC
Confidence            999999999999999999999999999999 97

>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S

Probab=100.00  E-value=2.3e-52  Score=319.97  Aligned_cols=106  Identities=40%  Similarity=0.601  Sum_probs=103.2

Q ss_pred             chHHHHHHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChH--HHHHHHHhhcChhHHHHHHHHHHHhhccCC
Q 031308           11 TGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLC--AARRAAAFVRGDDVIHKLFTELAYRYKDRA   88 (161)
Q Consensus        11 ~~hR~allRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~--~rr~a~~~L~d~~~v~KLF~elaPRy~~R~   88 (161)
                      ++||++|||||+||||+||+|+||++||||+|+|||+|||+||+|++|  ++|+|.+||.|+++|+|||++|+|||++|+
T Consensus         2 ~~~R~amlrnl~tsLi~herI~TT~~KAKelR~~aEklITlaK~g~~~~r~rR~a~~~l~d~~~v~KLF~elapry~~R~   81 (122)
T 2cqm_A            2 SSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQT   81 (122)
T ss_dssp             CCCCSSHHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHSC
T ss_pred             cHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence            689999999999999999999999999999999999999999999998  569999999999999999999999999999


Q ss_pred             CCeEEEEeccCCCCCCCcceeeecccCCc
Q 031308           89 GGYTRLLRSRIRVGDAAPMAYIDRFVDRE  117 (161)
Q Consensus        89 GGYTRI~kl~~R~GD~A~maiIE~lVd~~  117 (161)
                      ||||||+|+++|.||+||||||| |||+|
T Consensus        82 GGYTRI~K~~~R~GD~A~maiIE-LVd~p  109 (122)
T 2cqm_A           82 GGYTRMLQIPNRSLDRAKMAVIE-YKGNC  109 (122)
T ss_dssp             SCCEEEEEECCCSSSCCCEEEEE-ESSCC
T ss_pred             CCeeEEEECCCCCCCCCCeEEEE-eCCCC
Confidence            99999999999999999999999 99974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	161
d2qamn1	120	d.188.1.1 (N:1-120) Prokaryotic ribosomal protein	5e-38
d2zjrk1	113	d.188.1.1 (K:3-115) Prokaryotic ribosomal protein	7e-37
d1gd8a_	105	d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {	2e-31
d2cqma1	109	d.188.1.1 (A:28-136) Prokaryotic ribosomal protein	3e-30

>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (312), Expect = 5e-38
 Identities = 55/115 (47%), Positives = 75/115 (65%), Gaps = 1/115 (0%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R 
Sbjct: 6   SGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRL 65

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRE 117
           A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYI+  VDR 
Sbjct: 66  AFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE-LVDRS 119

>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  121 bits (304), Expect = 7e-37
 Identities = 42/108 (38%), Positives = 63/108 (58%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             RKLNR +  R+++ R   + L++  RI+TT+ KAKE+R   + ++   K G L + R 
Sbjct: 4   AGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRL 63

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYI 110
            A  +   DV+ K+  E+A +Y +R GGYTR+LR   R GD   MA I
Sbjct: 64  VAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALI 111

>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]} Length = 105

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Thermus thermophilus [TaxId: 274]

 Score =  106 bits (267), Expect = 2e-31
 Identities = 44/106 (41%), Positives = 66/106 (62%), Gaps = 2/106 (1%)

Query: 11  TGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGD 70
           + HR+++ R     L+ H RI TTV KAKE+R   D+++ L K G L A R     ++  
Sbjct: 1   SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDV 60

Query: 71  DVIHKLFTELAYRYKDRAGGYTRLLR-SRIRVGDAAPMAYIDRFVD 115
            ++ KLF E+A RY+DR GGYTR+L+ +  R GD AP+A ++  V+
Sbjct: 61  KLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVE-LVE 105

>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (259), Expect = 3e-30
 Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 9/116 (7%)

Query: 17  MLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA--RRAAAFVRGDDVIH 74
           +LR +++ LV+HERIE   A+  E+R  A+ ++  GK G       R A  ++   D+I 
Sbjct: 1   LLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIP 60

Query: 75  KLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRENELRQSKPAVPQP 130
           KLF  LA RYKD+ GGYTR+L+   R  D A MA I+ +           P +P P
Sbjct: 61  KLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIE-YKGNC------LPPLPLP 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d2qamn1	120	Prokaryotic ribosomal protein L17 {Escherichia col	100.0
d2zjrk1	113	Prokaryotic ribosomal protein L17 {Deinococcus rad	100.0
d1gd8a_	105	Prokaryotic ribosomal protein L17 {Thermus thermop	100.0
d2cqma1	109	Prokaryotic ribosomal protein L17 {Human (Homo sap	100.0

>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-54  Score=329.93  Aligned_cols=115  Identities=48%  Similarity=0.781  Sum_probs=113.4

Q ss_pred             CcccCCCCCchHHHHHHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChHHHHHHHHhhcChhHHHHHHHHHH
Q 031308            2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA   81 (161)
Q Consensus         2 ~~~rkLgR~~~hR~allRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~~rr~a~~~L~d~~~v~KLF~ela   81 (161)
                      ++++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+|+++++|++.+||.|+++|+|||++|+
T Consensus         5 ~~~rklgr~~~hR~allrnl~t~Li~herI~TT~aKAKelr~~~EklIt~aK~~~~~~rr~~~~~l~d~~~v~kLf~~ia   84 (120)
T d2qamn1           5 KSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELG   84 (120)
T ss_dssp             CCCCCTTSCTTGGGTTTHHHHHHHHHHSEECCBSHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHSSCCTTHHHHTTTTHH
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHcCCeEecHHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeEEEEeccCCCCCCCcceeeecccCCc
Q 031308           82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRFVDRE  117 (161)
Q Consensus        82 PRy~~R~GGYTRI~kl~~R~GD~A~maiIE~lVd~~  117 (161)
                      |||++|+||||||+|+++|.||+||||||| |||++
T Consensus        85 pry~~R~GGYTRI~klg~R~GD~A~maiiE-lVd~~  119 (120)
T d2qamn1          85 PRFASRAGGYTRILKCGFRAGDNAPMAYIE-LVDRS  119 (120)
T ss_dssp             HHTTTCCSCCEECCCCCCCSSSCCCBCCEE-ETTCC
T ss_pred             hHhcCCCCCeeeeeecCCCCCCCCCEEEEE-EecCC
Confidence            999999999999999999999999999999 99986

>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.5e-53  Score=321.00  Aligned_cols=111  Identities=38%  Similarity=0.630  Sum_probs=109.4

Q ss_pred             CcccCCCCCchHHHHHHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChHHHHHHHHhhcChhHHHHHHHHHH
Q 031308            2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA   81 (161)
Q Consensus         2 ~~~rkLgR~~~hR~allRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~~rr~a~~~L~d~~~v~KLF~ela   81 (161)
                      ++++||||+++||++|||||++|||+||||+||++||||+|+|||+|||+||+|++|++|++.+||.|+++|+|||++|+
T Consensus         3 ~~~rklgr~~~hR~allrnl~~sLi~herI~TT~~KAKelr~~~EklIT~AK~~~~~~rr~~~~~l~~k~~v~kLf~~ia   82 (113)
T d2zjrk1           3 KAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVA   82 (113)
T ss_dssp             CCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHH
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHheecccCChhhhhhhhhhcccHHHHHHHHHHHh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeEEEEeccCCCCCCCcceeeecc
Q 031308           82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIDRF  113 (161)
Q Consensus        82 PRy~~R~GGYTRI~kl~~R~GD~A~maiIE~l  113 (161)
                      |||++|+||||||+|+++|.||+||||+|| |
T Consensus        83 pry~~R~GGYTRI~kl~~R~gD~A~ma~iE-L  113 (113)
T d2zjrk1          83 PKYAERPGGYTRILRVGTRRGDGVTMALIE-L  113 (113)
T ss_dssp             HHTTTSCSCCCEEEECCCCTTTCCCEEEEE-C
T ss_pred             HHhcCCCCCeEEEEECCCCCCCCCceEEEe-C
Confidence            999999999999999999999999999999 6

>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2e-51  Score=305.91  Aligned_cols=104  Identities=42%  Similarity=0.729  Sum_probs=102.2

Q ss_pred             chHHHHHHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChHHHHHHHHhhcChhHHHHHHHHHHHhhccCCCC
Q 031308           11 TGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGG   90 (161)
Q Consensus        11 ~~hR~allRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~~rr~a~~~L~d~~~v~KLF~elaPRy~~R~GG   90 (161)
                      +|||++|||||+++||+||+|+||++||||+|+|||+|||+||+|++|++|++.++|.|+++++|||++|+|||++|+||
T Consensus         1 sshR~allrnl~t~Li~~erI~TT~~KAKelr~~~EklIt~aK~~~~~~rr~~~~~l~~~~~v~KLf~~lapry~~R~GG   80 (105)
T d1gd8a_           1 SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYRDRQGG   80 (105)
T ss_dssp             CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTSSCCSC
T ss_pred             ChHHHHHHHHHHHHHHHcCEEEEcHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecc-CCCCCCCcceeeecccC
Q 031308           91 YTRLLRSR-IRVGDAAPMAYIDRFVD  115 (161)
Q Consensus        91 YTRI~kl~-~R~GD~A~maiIE~lVd  115 (161)
                      ||||+|++ +|.||+||||+|| |||
T Consensus        81 YTRI~kl~~~R~GD~A~ma~iE-lVd  105 (105)
T d1gd8a_          81 YTRVLKLAERRRGDGAPLALVE-LVE  105 (105)
T ss_dssp             CEEEEEEEEECTTTCCEEEEEE-ECC
T ss_pred             eEEEEecCCCCCCCCCCEEEEE-eeC
Confidence            99999997 5999999999999 997

>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-48  Score=291.79  Aligned_cols=100  Identities=41%  Similarity=0.632  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHhcCceeecHHhHHHHHHhHHHHHHHhhcCChHHH--HHHHHhhcChhHHHHHHHHHHHhhccCCCCeEEE
Q 031308           17 MLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA--RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRL   94 (161)
Q Consensus        17 llRnLvtsLi~herI~TT~~KAKelr~~aEkLIt~AK~g~~~~r--r~a~~~L~d~~~v~KLF~elaPRy~~R~GGYTRI   94 (161)
                      |||||+||||+||||+||++||||+|+|||+|||+||+|++|++  +++.+|+.|+++|+|||++|+|||+||+||||||
T Consensus         1 llrnl~tsLi~herI~TT~~KAKelr~~~ErLIt~aK~~~~~~r~~~~~~~~l~~k~~v~KLf~~lapry~~R~GGYTRI   80 (109)
T d2cqma1           1 LLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRM   80 (109)
T ss_dssp             HHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHSCSCCEEE
T ss_pred             ChHHHHHHHHHcCeEEecHHHHHHHHHhHHHHHHHhhcCchhHHHHHHhhhhcccHHHHHHHHHHHhHHHhcCCCCeEEE
Confidence            79999999999999999999999999999999999999999987  8888999999999999999999999999999999


Q ss_pred             EeccCCCCCCCcceeeecccCCc
Q 031308           95 LRSRIRVGDAAPMAYIDRFVDRE  117 (161)
Q Consensus        95 ~kl~~R~GD~A~maiIE~lVd~~  117 (161)
                      +|+++|.||+|+||+|| |||+|
T Consensus        81 ~kl~~R~gD~A~ma~iE-lv~~p  102 (109)
T d2cqma1          81 LQIPNRSLDRAKMAVIE-YKGNC  102 (109)
T ss_dssp             EEECCCSSSCCCEEEEE-ESSCC
T ss_pred             EecCCCCCCCCCeEEEE-ECCCC
Confidence            99999999999999999 99985