Citrus Sinensis ID: 031311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MILSTKELLPSLLLASKKIKGSQKMVSYSIMRVFWHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEccHHHHHHHHHHHHHHHcccEEEEccccccccccEEEEEEEEcccEEEccEEEEEEEEcccccccccEEEEEEcccccccccEEEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEccccccccccEEEEEEEccccEEEccEEEEEEEccccccccccEEEEEEcccccccccccEEEEEEEccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MILSTKELLPSLLLASKKIKGSQKMVSYSIMRVFWHFglnwafvdpktpiqngvKFCVCVkeflpwvtlpLQIVYVNESIrkkktaasfgfgsgtlqghllageerfsielddnnqVWYEIVSFskpadflsfigypyVQLRQKYFAHQSVNAVKKHLTAS
Flexible Loop (DISEMBL)
MILSTKELLPSLLLAskkikgsqKMVSYSIMRVFWHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Low Complexity Region (SEG)
MIlstkellpslllaskkikGSQKMVSYSIMRVFWHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Disordered region (IsUnstruct)
***********LLLASKKIKGSQKMVSYSIMRVFWHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNA********
Disordered Region (DISOPRED)
**LST**LLPSLLLASKKIKGSQKMVSYSIMRVFWHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKH****
Disordered Region (DISEMBL)
MILSTKELLPSLLLASKKIKGSQKMVSYSIMRVFWHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Disordered Region (DISPRO)
*ILSTKELLPSLLLASKKIKGSQKMVSYSIMRVFWHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILSTKELLPSLLLASKKIKGSQKMVSYSIMRVFWHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q8GXB1	205	UPF0548 protein At2g17695	yes	no	0.782	0.614	0.714	5e-52
Q86JL6	216	UPF0548 protein OS=Dictyo	yes	no	0.776	0.578	0.328	1e-10
Q9RST8	198	UPF0548 protein DR_2035 O	yes	no	0.652	0.530	0.324	1e-08

>sp|Q8GXB1|U548_ARATH UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2 SV=1

 Score =  202 bits (515), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 106/126 (84%)

Query: 36  HFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGT 95
           HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV+ES + +K  A FG+GSGT
Sbjct: 80  HFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDESRKSRKGPAHFGYGSGT 139

Query: 96  LQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVK 155
           LQGHLLAGEE+FSIELD N +VWYEI SFSKPA FLSF+GYPYV+LRQK+FA  S  AV 
Sbjct: 140 LQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYVKLRQKHFARHSSEAVL 199

Query: 156 KHLTAS 161
           KH+ AS
Sbjct: 200 KHVNAS 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q86JL6|U548_DICDI UPF0548 protein OS=Dictyostelium discoideum GN=DDB_G0271742 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 9/134 (6%)

Query: 36  HFGLNWA-FVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSG 94
           HF L+W  F    TPI  G    +  K+   W+    +I Y+ +   ++  +  FG+  G
Sbjct: 78  HFDLDWVDFYFKNTPIAVGETVGILSKQVGFWILSFARINYLYDG-DQEDGSIKFGYSYG 136

Query: 95  TLQGHLLAGEERFSIE-------LDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFA 147
           TL+ H+  GEERF IE         D   V+YE++SFS+P+ +LS +GYP  +  Q  F 
Sbjct: 137 TLKDHVEKGEERFVIEWVRDPDGAPDKGAVYYEMLSFSEPSYWLSQLGYPVTRYFQNKFV 196

Query: 148 HQSVNAVKKHLTAS 161
             S N + K + ++
Sbjct: 197 VDSCNQMLKAVGSN 210

Dictyostelium discoideum (taxid: 44689)

>sp|Q9RST8|Y2035_DEIRA UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_2035 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 45  DPKTPI-QNGVKFCVCVKEFLPWVTLP--LQIVYVNESIRKKKTAASFGFGSGTLQGHLL 101
           +  TP+ + G    + V+ F PW      L  +  N  +        +GFG GTL GHL+
Sbjct: 80  EASTPLSRQGATVVLLVRHFGPWGRRKWGLYSLMTNRVLYLVDEPDRYGFGYGTLPGHLV 139

Query: 102 AGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQ 149
            GEERF +E D    VW+++ +FS+ A   S    P V   Q+  A  
Sbjct: 140 RGEERFLLERDAGGAVWFDLTTFSRAALPFSRFAQPLVGAAQRRGARH 187

Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) (taxid: 243230)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
224133942	202	predicted protein [Populus trichocarpa]	0.782	0.623	0.785	2e-54
217073422	207	unknown [Medicago truncatula] gi|3885012	0.826	0.642	0.706	2e-54
351727507	207	uncharacterized protein LOC100527004 [Gl	0.826	0.642	0.714	1e-53
357517863	232	hypothetical protein MTR_8g074720 [Medic	0.826	0.573	0.703	1e-53
255561315	205	conserved hypothetical protein [Ricinus	0.826	0.648	0.744	6e-53
449434104	208	PREDICTED: UPF0548 protein At2g17695-lik	0.782	0.605	0.753	4e-51
297836486	205	hypothetical protein ARALYDRAFT_480662 [	0.782	0.614	0.730	6e-51
30680073	205	uncharacterized protein [Arabidopsis tha	0.782	0.614	0.714	3e-50
418731084	203	hypothetical protein [Solanum tuberosum]	0.770	0.610	0.752	1e-49
297742205	229	unnamed protein product [Vitis vinifera]	0.776	0.545	0.696	6e-48

>gi|224133942|ref|XP_002327717.1| predicted protein [Populus trichocarpa] gi|222836802|gb|EEE75195.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/126 (78%), Positives = 110/126 (87%)

Query: 36  HFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGT 95
           HFG +W FVD KTPI++GVKFCVCVKEFLPWV +PLQIVYVNES   KK  ASF FG GT
Sbjct: 77  HFGFDWGFVDSKTPIRSGVKFCVCVKEFLPWVMMPLQIVYVNESRSSKKDMASFCFGGGT 136

Query: 96  LQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVK 155
           LQGHLLAGEERFSIE+D+ NQVWYE++SFSKPA FLSFIGYPYVQLRQK+FAHQS NAV 
Sbjct: 137 LQGHLLAGEERFSIEMDEKNQVWYEVLSFSKPAHFLSFIGYPYVQLRQKFFAHQSSNAVV 196

Query: 156 KHLTAS 161
           KH++ S
Sbjct: 197 KHVSGS 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073422|gb|ACJ85070.1| unknown [Medicago truncatula] gi|388501276|gb|AFK38704.1| unknown [Medicago truncatula]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 113/133 (84%)

Query: 29  SIMRVFWHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAAS 88
           S +R + HFG+NWAFVDPKTP++ G KFCVCVKEFLPW+ +PLQ+VYVNE+   K   AS
Sbjct: 73  SALRSWRHFGMNWAFVDPKTPVEQGAKFCVCVKEFLPWLMMPLQVVYVNETSTTKNRGAS 132

Query: 89  FGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAH 148
           FGFGSGTLQGHLLAGEERFS+E+D+NNQVWYEI+SFSKPA  LSF+GYP+V LRQKYFAH
Sbjct: 133 FGFGSGTLQGHLLAGEERFSVEIDENNQVWYEILSFSKPAHVLSFVGYPHVMLRQKYFAH 192

Query: 149 QSVNAVKKHLTAS 161
           +S   + KH+ +S
Sbjct: 193 ESAKVMLKHINSS 205

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727507|ref|NP_001237163.1| uncharacterized protein LOC100527004 [Glycine max] gi|255631350|gb|ACU16042.1| unknown [Glycine max]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/133 (71%), Positives = 112/133 (84%)

Query: 29  SIMRVFWHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAAS 88
           S +R + HFGLNWAFVDPKTP+Q GVKFCVCVKEF PW+ +PLQ+VYVNE+   K   AS
Sbjct: 73  SALRSWRHFGLNWAFVDPKTPVQQGVKFCVCVKEFFPWLMMPLQVVYVNETGTAKYRTAS 132

Query: 89  FGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAH 148
           FGFGSGTL GHLLAGEERFSIE+D+NNQVWYE++SFSKPA  LS +GYPYV LRQKYFA+
Sbjct: 133 FGFGSGTLHGHLLAGEERFSIEIDENNQVWYEVLSFSKPASILSLVGYPYVMLRQKYFAN 192

Query: 149 QSVNAVKKHLTAS 161
           +S  A+ KH+ +S
Sbjct: 193 ESAKAMLKHINSS 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517863|ref|XP_003629220.1| hypothetical protein MTR_8g074720 [Medicago truncatula] gi|355523242|gb|AET03696.1| hypothetical protein MTR_8g074720 [Medicago truncatula]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/135 (70%), Positives = 113/135 (83%), Gaps = 2/135 (1%)

Query: 29  SIMRVFWHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAAS 88
           S +R + HFG+NWAFVDPKTP++ G KFCVCVKEFLPW+ +PLQ+VYVNE+   K   AS
Sbjct: 96  SALRSWRHFGMNWAFVDPKTPVEQGAKFCVCVKEFLPWLMMPLQVVYVNETSTTKNRGAS 155

Query: 89  FGFGSGTLQGHLL--AGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYF 146
           FGFGSGTLQGHLL  AGEERFS+E+D+NNQVWYEI+SFSKPA  LSF+GYPYV LRQKYF
Sbjct: 156 FGFGSGTLQGHLLVAAGEERFSVEIDENNQVWYEILSFSKPAHVLSFVGYPYVMLRQKYF 215

Query: 147 AHQSVNAVKKHLTAS 161
           AH+S   + KH+ +S
Sbjct: 216 AHESAKVMLKHINSS 230

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561315|ref|XP_002521668.1| conserved hypothetical protein [Ricinus communis] gi|223539059|gb|EEF40655.1| conserved hypothetical protein [Ricinus communis]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 99/133 (74%), Positives = 113/133 (84%)

Query: 29  SIMRVFWHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAAS 88
           S ++ + HFGLNWAFVDPKT IQ+GVKFCVC KEFLPWV +PLQ++YV ES   KK  AS
Sbjct: 73  SALQNWRHFGLNWAFVDPKTAIQSGVKFCVCYKEFLPWVMMPLQMIYVKESRNAKKGMAS 132

Query: 89  FGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAH 148
           F FG GTLQGHLLAGEERFSIE+D+NNQVWYEI+SFSKP  FLSFIGYPYV+LRQK FA+
Sbjct: 133 FCFGGGTLQGHLLAGEERFSIEMDENNQVWYEILSFSKPDHFLSFIGYPYVKLRQKDFAN 192

Query: 149 QSVNAVKKHLTAS 161
           QS NAV +H+ AS
Sbjct: 193 QSANAVLEHVNAS 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434104|ref|XP_004134836.1| PREDICTED: UPF0548 protein At2g17695-like [Cucumis sativus] gi|449491283|ref|XP_004158849.1| PREDICTED: UPF0548 protein At2g17695-like [Cucumis sativus]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 104/126 (82%)

Query: 36  HFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGT 95
           HFGLNWAFVD  TP+  GVKFCVC KEFLPWV LPLQIVYVNE+    K    F FGSGT
Sbjct: 81  HFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNENRDTNKGRTCFSFGSGT 140

Query: 96  LQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVK 155
           LQGHLLAGEERFSIE+D N+QVWYEI+SFSKPA  LSF+ YPY+ LRQKYFAHQS NAVK
Sbjct: 141 LQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYIILRQKYFAHQSTNAVK 200

Query: 156 KHLTAS 161
           K+LT +
Sbjct: 201 KYLTPT 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836486|ref|XP_002886125.1| hypothetical protein ARALYDRAFT_480662 [Arabidopsis lyrata subsp. lyrata] gi|297331965|gb|EFH62384.1| hypothetical protein ARALYDRAFT_480662 [Arabidopsis lyrata subsp. lyrata]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 106/126 (84%)

Query: 36  HFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGT 95
           HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV+ES + +K  A FG+GSGT
Sbjct: 80  HFGMDWAFVDPATPVETGKKFCICVKEVLPWVILPLQVVYVDESRKSRKGPAHFGYGSGT 139

Query: 96  LQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVK 155
           LQGHLLAGEERFSIELD N +VWYEI SFSKPA FLSF+GYPYV+LRQK+FA  S  AV 
Sbjct: 140 LQGHLLAGEERFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYVKLRQKHFARHSSEAVL 199

Query: 156 KHLTAS 161
           KHL AS
Sbjct: 200 KHLKAS 205

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680073|ref|NP_849965.1| uncharacterized protein [Arabidopsis thaliana] gi|186501122|ref|NP_001118341.1| uncharacterized protein [Arabidopsis thaliana] gi|334184277|ref|NP_001189543.1| uncharacterized protein [Arabidopsis thaliana] gi|75151174|sp|Q8GXB1.1|U548_ARATH RecName: Full=UPF0548 protein At2g17695 gi|26451700|dbj|BAC42945.1| unknown protein [Arabidopsis thaliana] gi|28973335|gb|AAO63992.1| unknown protein [Arabidopsis thaliana] gi|330251573|gb|AEC06667.1| uncharacterized protein [Arabidopsis thaliana] gi|330251574|gb|AEC06668.1| uncharacterized protein [Arabidopsis thaliana] gi|330251575|gb|AEC06669.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 106/126 (84%)

Query: 36  HFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGT 95
           HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV+ES + +K  A FG+GSGT
Sbjct: 80  HFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDESRKSRKGPAHFGYGSGT 139

Query: 96  LQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVK 155
           LQGHLLAGEE+FSIELD N +VWYEI SFSKPA FLSF+GYPYV+LRQK+FA  S  AV 
Sbjct: 140 LQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYVKLRQKHFARHSSEAVL 199

Query: 156 KHLTAS 161
           KH+ AS
Sbjct: 200 KHVNAS 205

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731084|gb|AFX67009.1| hypothetical protein [Solanum tuberosum]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/125 (75%), Positives = 104/125 (83%), Gaps = 1/125 (0%)

Query: 36  HFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGT 95
           HFGLNWAFVDPK PIQ+G KFCVCVKEF PW+ +PLQ+VYV E+ +  K  ASF FGSGT
Sbjct: 80  HFGLNWAFVDPKAPIQSGTKFCVCVKEFFPWLMMPLQVVYVTEN-KNSKMGASFSFGSGT 138

Query: 96  LQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVK 155
           LQGHLLAGEERFSI LD+N+ VWYEI+SFSKPA  LS  GYPYV LRQKYFAH S  AVK
Sbjct: 139 LQGHLLAGEERFSIALDENDLVWYEILSFSKPAHLLSLFGYPYVLLRQKYFAHHSGIAVK 198

Query: 156 KHLTA 160
           KHL+A
Sbjct: 199 KHLSA 203

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742205|emb|CBI34354.3| unnamed protein product [Vitis vinifera]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 87/125 (69%), Positives = 100/125 (80%)

Query: 36  HFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGT 95
           HF  +WAFVDP TPI+ GVKFCVC K FLPW  +PL++VYV+E     K  ASFGFGSGT
Sbjct: 105 HFAFDWAFVDPTTPIRKGVKFCVCTKTFLPWTMMPLEVVYVDEKKNANKAIASFGFGSGT 164

Query: 96  LQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVK 155
           L GHLLAGEERFSIELD+N+QVWYE++SFSKP + LS +GYPYVQ  QK FAH S NAV 
Sbjct: 165 LHGHLLAGEERFSIELDENDQVWYEVLSFSKPGNILSVLGYPYVQSMQKRFAHLSTNAVL 224

Query: 156 KHLTA 160
           KHL+A
Sbjct: 225 KHLSA 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:1005716645	205	AT2G17695 "AT2G17695" [Arabido	0.788	0.619	0.710	1.4e-48
DICTYBASE|DDB_G0271742	216	DDB_G0271742 "UPF0548 family p	0.751	0.560	0.343	1.5e-12
UNIPROTKB|O06198	166	Rv2616 "Conserved protein" [My	0.527	0.512	0.336	2e-08

TAIR|locus:1005716645 AT2G17695 "AT2G17695" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 91/128 (71%), Positives = 107/128 (83%)

Query:    35 W-HFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGS 93
             W HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV+ES + +K  A FG+GS
Sbjct:    78 WKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDESRKSRKGPAHFGYGS 137

Query:    94 GTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNA 153
             GTLQGHLLAGEE+FSIELD N +VWYEI SFSKPA FLSF+GYPYV+LRQK+FA  S  A
Sbjct:   138 GTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYVKLRQKHFARHSSEA 197

Query:   154 VKKHLTAS 161
             V KH+ AS
Sbjct:   198 VLKHVNAS 205

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

DICTYBASE|DDB_G0271742 DDB_G0271742 "UPF0548 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 45/131 (34%), Positives = 67/131 (51%)

Query:    35 W-HFGLNWA-FVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFG 92
             W HF L+W  F    TPI  G    +  K+   W+    +I Y+ +   ++  +  FG+ 
Sbjct:    76 WKHFDLDWVDFYFKNTPIAVGETVGILSKQVGFWILSFARINYLYDG-DQEDGSIKFGYS 134

Query:    93 SGTLQGHLLAGEERFSIE-------LDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKY 145
              GTL+ H+  GEERF IE         D   V+YE++SFS+P+ +LS +GYP  +  Q  
Sbjct:   135 YGTLKDHVEKGEERFVIEWVRDPDGAPDKGAVYYEMLSFSEPSYWLSQLGYPVTRYFQNK 194

Query:   146 FAHQSVNAVKK 156
             F   S N + K
Sbjct:   195 FVVDSCNQMLK 205

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|O06198 Rv2616 "Conserved protein" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 31/92 (33%), Positives = 52/92 (56%)

Query:    64 LPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWY-EIV 122
             + ++  P ++VYV +    +      GFG GTL GH ++GEERF++  D    V + E++
Sbjct:    81 IAFLRAPCRVVYVIDEPDVR------GFGYGTLPGHPVSGEERFAVRCDPMTSVVFAEVL 134

Query:   123 SFSKPADFLSFIGYPYVQLRQKYFAHQSVNAV 154
             SFS+PA + S    P   + Q++ A + + AV
Sbjct:   135 SFSRPATWASKAAGPLGAVTQRFIAQRYLRAV 166


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       143   0.00091  102 3  11 22  0.40    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  154 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.45u 0.10s 13.55t   Elapsed:  00:00:00
  Total cpu time:  13.45u 0.10s 13.55t   Elapsed:  00:00:00
  Start:  Fri May 10 21:18:26 2013   End:  Fri May 10 21:18:26 2013

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GXB1	U548_ARATH	No assigned EC number	0.7142	0.7826	0.6146	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
pfam09348	158	pfam09348, DUF1990, Domain of unknown function (DU	7e-41
COG4762	168	COG4762, COG4762, Uncharacterized protein conserve	4e-15

>gnl|CDD|220195 pfam09348, DUF1990, Domain of unknown function (DUF1990)

 Score =  134 bits (339), Expect = 7e-41
 Identities = 51/123 (41%), Positives = 69/123 (56%), Gaps = 10/123 (8%)

Query: 35  W-HFGLNWAFV-DPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV-NESIRKKKTAASFGF 91
           W  F L    V  P TP + G    +  +    WV  P ++VYV +E  R       FGF
Sbjct: 43  WRMFRLAGVRVIAPATPPEVGRTVLLRARLGGLWVLAPCRVVYVVDEPRR-------FGF 95

Query: 92  GSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSV 151
             GTL GH   GEERF +E DD+ +VWYEI +FS+PA +LS +G P V+L Q+ FA + +
Sbjct: 96  AYGTLPGHPERGEERFLVERDDDGRVWYEITAFSRPATWLSRLGGPLVRLAQRRFARRYL 155

Query: 152 NAV 154
            A+
Sbjct: 156 RAL 158

This family of proteins are functionally uncharacterized. Length = 158

>gnl|CDD|227103 COG4762, COG4762, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 68.4 bits (167), Expect = 4e-15
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 7/92 (7%)

Query: 65  PW-VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVS 123
            W +  P +++Y+ +           GFG GTL GH++ GEERF IE D  + V +EI+S
Sbjct: 82  IWFLRAPCRVLYLIDEPDV------RGFGYGTLPGHVVRGEERFLIERDAMDSVVFEILS 135

Query: 124 FSKPADFLSFIGYPYVQLRQKYFAHQSVNAVK 155
           FS+PA + S +  P V + Q+  A + +  +K
Sbjct: 136 FSRPALWASKLAGPLVAVVQRRIAQRYLRGLK 167

Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PF09348	158	DUF1990: Domain of unknown function (DUF1990); Int	100.0
COG4762	168	Uncharacterized protein conserved in bacteria [Fun	100.0
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	96.03
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	91.02
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	89.92
TIGR02266	96	gmx_TIGR02266 Myxococcus xanthus paralogous domain	82.68
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	81.12

>PF09348 DUF1990: Domain of unknown function (DUF1990); InterPro: IPR018960 This entry represents proteins that are functionally uncharacterised

Probab=100.00  E-value=2.5e-52  Score=331.62  Aligned_cols=139  Identities=31%  Similarity=0.501  Sum_probs=129.8

Q ss_pred             chhhHHhhhcccCCC---chHHHHHHHhcCcccccceeEE-cCCCCCcCCcEEEEeeecccceeeeceEEEEEeeccccc
Q 031311            8 LLPSLLLASKKIKGS---QKMVSYSIMRVFWHFGLNWAFV-DPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKK   83 (161)
Q Consensus         8 ~~~~~~~~~~~~~~~---~~~~A~~aL~~W~~~~~~w~~V-~~~~p~~~G~~V~v~~g~~~~~~~~pcRVv~V~de~~~~   83 (161)
                      ++-.++ .+.+| |.   .|++|++||++|+||+.+|++| .+++|+++|++|+++.+.+++|+.+|||||||+||++  
T Consensus        16 Gy~~~~-~~~~l-G~G~~~f~~A~~al~~W~~~~~~g~~v~~~~~~~~~G~~v~l~~~~~~~~~~~p~RVv~v~de~~--   91 (158)
T PF09348_consen   16 GYRHVR-RRVRL-GSGEAVFERAAAALLSWRMHRRAGVRVRASDPPAAPGRTVVLRAGVGPLWIRAPCRVVYVVDEPD--   91 (158)
T ss_pred             CceEEE-EEEEc-cCCchHHHHHHHHHhccCCCCCcEEEEECCCCccCCCCEEEEEeeccceEEEeeEEEEEEEcCCc--
Confidence            444455 67778 44   7999999999999999999999 5667789999999999998999999999999999886  


Q ss_pred             CCcceeEEeeccCCCCccceeEEEEEEEeCCCeEEEEEEEeecCChhhHhhhhhhHHHHHHHHHHHHHHHH
Q 031311           84 KTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAV  154 (161)
Q Consensus        84 ~~~~r~GFaYGTLpGH~e~GEE~F~Ve~~~dg~V~~~I~AFSRPa~~l~rlg~P~~r~~Qr~f~rry~~am  154 (161)
                          ++||+|||||||||+|||+|.|++|+||+|||+|.|||||++|++||++|+++.+|++|+++|++||
T Consensus        92 ----r~GF~ygTL~GHpe~GEE~F~V~~~~dg~V~~~I~afSRP~~~~~rl~~P~~r~~Q~~~~rry~~am  158 (158)
T PF09348_consen   92 ----RFGFAYGTLPGHPERGEERFSVERDDDGSVWFEIRAFSRPASWLARLGYPVARRAQRRFARRYLRAM  158 (158)
T ss_pred             ----eEEEEEEeCCCChhhcEEEEEEEECCCCeEEEEEEEEecccchHHHhhhHHHHHHHHHHHHHHHhhC
Confidence                9999999999999999999999999999999999999999999999999999999999999999997

>COG4762 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=5.6e-43  Score=277.53  Aligned_cols=125  Identities=29%  Similarity=0.390  Sum_probs=117.9

Q ss_pred             CchHHHHHHHhcCcccccceeEEcCCCCCcCCcEEEEeeecccce-eeeceEEEEEeecccccCCcceeEEeeccCCCCc
Q 031311           22 SQKMVSYSIMRVFWHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPW-VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHL  100 (161)
Q Consensus        22 ~~~~~A~~aL~~W~~~~~~w~~V~~~~p~~~G~~V~v~~g~~~~~-~~~pcRVv~V~de~~~~~~~~r~GFaYGTLpGH~  100 (161)
                      +-|++|++||++|+||+.++++|+++.++.++..+++..|   +| +.+||||+|++|||+      ++||+|||||||+
T Consensus        42 acfenA~~aL~sw~~hr~aglrvh~s~s~vv~~~~vllvg---~w~~r~~cRVL~l~d~~~------~~gf~yGTL~ghv  112 (168)
T COG4762          42 ACFENAADALMSWGMHRNAGLRVHASSSTVVLVSAVLLVG---IWFLRAPCRVLYLIDEPD------VRGFGYGTLPGHV  112 (168)
T ss_pred             HHHHHHHHHHhcccccccccEEeeccCCceeeeeeeeeee---eeeeecccEEEEEecCCc------eeEEeecccCCcc
Confidence            3599999999999999999999999999888877777764   56 899999999999887      9999999999999


Q ss_pred             cceeEEEEEEEeCCCeEEEEEEEeecCChhhHhhhhhhHHHHHHHHHHHHHHHHH
Q 031311          101 LAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVK  155 (161)
Q Consensus       101 e~GEE~F~Ve~~~dg~V~~~I~AFSRPa~~l~rlg~P~~r~~Qr~f~rry~~am~  155 (161)
                      ++|||+|.||+|++|+|||+|.+|||||.|+++++.|+++.+||+++++|++.|+
T Consensus       113 ~rgeErflierda~d~V~~~i~sfsr~Al~~skla~plv~~vqrr~aq~Ylrgl~  167 (168)
T COG4762         113 VRGEERFLIERDAMDSVVFEILSFSRPALWASKLAGPLVAVVQRRIAQRYLRGLK  167 (168)
T ss_pred             ccchhheeEEecCCCcEEEEeeccccchhhhhhhhhhHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999985

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=96.03  E-value=0.34  Score=34.58  Aligned_cols=128  Identities=13%  Similarity=0.113  Sum_probs=75.7

Q ss_pred             hcccCCCchHHHHHHHhcCccccccee-EEcCCCCCc-CCcE--EEEeeecccceeeeceEEEEEeecccccCCcceeEE
Q 031311           16 SKKIKGSQKMVSYSIMRVFWHFGLNWA-FVDPKTPIQ-NGVK--FCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGF   91 (161)
Q Consensus        16 ~~~~~~~~~~~A~~aL~~W~~~~~~w~-~V~~~~p~~-~G~~--V~v~~g~~~~~~~~pcRVv~V~de~~~~~~~~r~GF   91 (161)
                      +..| +++-+++-+.|.+...... |. .+....... .|..  .++...  +. ...-.+|+...+++.      .+.|
T Consensus         7 ~~~v-~a~~e~V~~~l~d~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~--g~-~~~~~~i~~~~~~~~------~~~~   75 (139)
T PF10604_consen    7 SIEV-PAPPEAVWDLLSDPENWPR-WWPGVKSVELLSGGGPGTERTVRVA--GR-GTVREEITEYDPEPR------RITW   75 (139)
T ss_dssp             EEEE-SS-HHHHHHHHTTTTGGGG-TSTTEEEEEEEEECSTEEEEEEEEC--SC-SEEEEEEEEEETTTT------EEEE
T ss_pred             EEEE-CCCHHHHHHHHhChhhhhh-hhhceEEEEEccccccceeEEEEec--cc-cceeEEEEEecCCCc------EEEE
Confidence            4556 6888888888877654432 22 121111221 2332  333332  22 345666776665233      6777


Q ss_pred             eeccCCCCccceeEEEEEEEeCCCeEEEEEEEeecCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 031311           92 GSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHL  158 (161)
Q Consensus        92 aYGTLpGH~e~GEE~F~Ve~~~dg~V~~~I~AFSRPa~~l~rlg~P~~r~~Qr~f~rry~~am~~~v  158 (161)
                      .-.  +.....+.-+|.++-.++| ..++....-+| .+...+..|+.+..-+...++.++.|++.+
T Consensus        76 ~~~--~~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  138 (139)
T PF10604_consen   76 RFV--PSGFTNGTGRWRFEPVGDG-TRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENLKRAA  138 (139)
T ss_dssp             EEE--SSSSCEEEEEEEEEEETTT-EEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEE--ecceeEEEEEEEEEEcCCC-EEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence            664  4444567888999888877 55666555555 444555677777777788888888888765

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=91.02  E-value=4.2  Score=28.81  Aligned_cols=131  Identities=16%  Similarity=0.148  Sum_probs=72.0

Q ss_pred             hcccCCCchHHHHHHHhcCcccccceeE-E-cCCCC-CcCCcEEEEeeeccc-ceeeeceEEEEEeecccccCCcceeEE
Q 031311           16 SKKIKGSQKMVSYSIMRVFWHFGLNWAF-V-DPKTP-IQNGVKFCVCVKEFL-PWVTLPLQIVYVNESIRKKKTAASFGF   91 (161)
Q Consensus        16 ~~~~~~~~~~~A~~aL~~W~~~~~~w~~-V-~~~~p-~~~G~~V~v~~g~~~-~~~~~pcRVv~V~de~~~~~~~~r~GF   91 (161)
                      |..| ++..++.=+++.+-.... .|.. + ..+.+ ..+|..+.......+ ......++|+.+..       +.++.|
T Consensus         5 ~~~i-~ap~~~Vw~~~~d~~~~~-~w~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-------~~~~~~   75 (141)
T cd07822           5 EIEI-NAPPEKVWEVLTDFPSYP-EWNPFVRSATGLSLALGARLRFVVKLPGGPPRSFKPRVTEVEP-------PRRLAW   75 (141)
T ss_pred             EEEe-cCCHHHHHHHHhcccccc-ccChhheeEeccccCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-------CCEeEE
Confidence            4566 677888888887765443 2221 1 12223 688998888775332 33455666655332       248888


Q ss_pred             eeccCCCCccceeEEEEEEEeCCCeEEEEEE-EeecCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 031311           92 GSGTLQGHLLAGEERFSIELDDNNQVWYEIV-SFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHL  158 (161)
Q Consensus        92 aYGTLpGH~e~GEE~F~Ve~~~dg~V~~~I~-AFSRPa~~l~rlg~P~~r~~Qr~f~rry~~am~~~v  158 (161)
                      ....-+.-...++-.|.++-.++|...++.. .|+-+   ..++..++.+..-+.-.++.++.|++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~L~~~~  140 (141)
T cd07822          76 RGGLPFPGLLDGEHSFELEPLGDGGTRFVHRETFSGL---LAPLVLLGLGRDLRAGFEAMNEALKARA  140 (141)
T ss_pred             EecCCCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEEE---EhHHhhhhhHHHHhHhHHHHHHHHHHhh
Confidence            8665543345677888888764455555443 44432   2233334343333333444566665543

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=89.92  E-value=5.3  Score=28.17  Aligned_cols=126  Identities=13%  Similarity=0.073  Sum_probs=65.0

Q ss_pred             CCchHHHHHHHhcCcccc--ccee-EE--cCCCCCcCCcEEEEeeecccceeeeceEEEEEeecccccCCcceeEEeecc
Q 031311           21 GSQKMVSYSIMRVFWHFG--LNWA-FV--DPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGT   95 (161)
Q Consensus        21 ~~~~~~A~~aL~~W~~~~--~~w~-~V--~~~~p~~~G~~V~v~~g~~~~~~~~pcRVv~V~de~~~~~~~~r~GFaYGT   95 (161)
                      +++.+..-+.|.+.....  ..++ .+  ..+.+..+|..+.+.....+.-+..-++|+... .+      +++.  |.+
T Consensus         8 ~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~-p~------~~~~--~~~   78 (140)
T cd08865           8 ERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYE-PG------RRVV--FRG   78 (140)
T ss_pred             cCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEec-CC------cEEE--EEe
Confidence            556666666665544221  1111 22  233456788888776653333344455555433 22      2444  344


Q ss_pred             CCCCccceeEEEEEEEeCCCe-EEEEEEEeecCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 031311           96 LQGHLLAGEERFSIELDDNNQ-VWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLT  159 (161)
Q Consensus        96 LpGH~e~GEE~F~Ve~~~dg~-V~~~I~AFSRPa~~l~rlg~P~~r~~Qr~f~rry~~am~~~v~  159 (161)
                      ..| +..++-.|.++-.++|. |.+++. |. + ..+.++..+++...=+...++.+++|++.+.
T Consensus        79 ~~~-~~~~~~~~~~~~~~~~t~v~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e  139 (140)
T cd08865          79 SSG-PFPYEDTYTFEPVGGGTRVRYTAE-LE-P-GGFARLLDPLMAPAFRRRARAALENLKALLE  139 (140)
T ss_pred             cCC-CcceEEEEEEEEcCCceEEEEEEE-Ec-c-chhHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence            333 67889999998765552 334443 32 2 2234455555444444445566667766543

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>TIGR02266 gmx_TIGR02266 Myxococcus xanthus paralogous domain TIGR02266

Probab=82.68  E-value=10  Score=26.23  Aligned_cols=44  Identities=14%  Similarity=0.123  Sum_probs=34.0

Q ss_pred             ccceeEEcCCCCCcCCcEEEEeeeccc--ceeeeceEEEEEeeccc
Q 031311           38 GLNWAFVDPKTPIQNGVKFCVCVKEFL--PWVTLPLQIVYVNESIR   81 (161)
Q Consensus        38 ~~~w~~V~~~~p~~~G~~V~v~~g~~~--~~~~~pcRVv~V~de~~   81 (161)
                      ..+|+++..+.+..+|+.|.+.+....  ..+...++|+|+.++.+
T Consensus        25 S~gG~~~~~~~~~~~g~~v~l~l~l~~~~~~i~~~g~Vv~~~~~~~   70 (96)
T TIGR02266        25 SKGGLFIRTRKPLAVGTRVELKLTLPGGERPVELKGVVAWVRPAAD   70 (96)
T ss_pred             CCceEEEecCCCcCCCCEEEEEEEcCCCCeEEEEEEEEEEeCCCCC
Confidence            357899988888999999988886433  23678999999987543

This domain is related to Type IV pilus assembly protein PilZ (Pfam model pfam07238). It is found in at least 12 copies in Myxococcus xanthus DK 1622.

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=81.12  E-value=20  Score=26.61  Aligned_cols=98  Identities=12%  Similarity=0.233  Sum_probs=55.5

Q ss_pred             CCCcCCcEEEEeeecccce-eeeceEEEEEeecccccCCcceeEEeeccCCCCccceeEEEEEEEeCCCeEEEEEE-Eee
Q 031311           48 TPIQNGVKFCVCVKEFLPW-VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIV-SFS  125 (161)
Q Consensus        48 ~p~~~G~~V~v~~g~~~~~-~~~pcRVv~V~de~~~~~~~~r~GFaYGTLpGH~e~GEE~F~Ve~~~dg~V~~~I~-AFS  125 (161)
                      .+...|.++.+......++ ...-++|..+ + +     +.++.|.   ..|+ ..|+-+|.++-.++| ..++.. .|+
T Consensus        43 ~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~-~-p-----~~~~~~~---~~g~-~~~~~~~~~~~~~~g-t~vt~~~~~~  110 (146)
T cd07824          43 DEAGIGARRRYTWRGLLPYRLRFELRVTRI-E-P-----LSLLEVR---ASGD-LEGVGRWTLAPDGSG-TVVRYDWEVR  110 (146)
T ss_pred             CCCCcceEEEEEEEecCCcEEEEEEEEEee-c-C-----CcEEEEE---EEEe-eeEEEEEEEEEcCCC-EEEEEEEEEE
Confidence            4456777665443212122 3333444322 2 2     2366554   2453 557888988876555 555554 566


Q ss_pred             cCCh---hhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 031311          126 KPAD---FLSFIGYPYVQLRQKYFAHQSVNAVKKH  157 (161)
Q Consensus       126 RPa~---~l~rlg~P~~r~~Qr~f~rry~~am~~~  157 (161)
                      -++.   .++.+..|+++..=+++.+.-+++|++.
T Consensus       111 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~  145 (146)
T cd07824         111 TTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR  145 (146)
T ss_pred             cCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence            6655   4666777777777777777777777654

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
3cnr_A	117	Type IV fimbriae assembly protein; PILZ, xanthomon	87.72

>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A

Probab=87.72  E-value=1.7  Score=32.02  Aligned_cols=49  Identities=8%  Similarity=0.045  Sum_probs=36.7

Q ss_pred             hcCccc-ccceeEEcCCCCCcCCcEEEEeeecccc--eeeeceEEEEEeecc
Q 031311           32 RVFWHF-GLNWAFVDPKTPIQNGVKFCVCVKEFLP--WVTLPLQIVYVNESI   80 (161)
Q Consensus        32 ~~W~~~-~~~w~~V~~~~p~~~G~~V~v~~g~~~~--~~~~pcRVv~V~de~   80 (161)
                      ..+-.+ ..||++|.++.|...|+.|.+.+.....  .+....+|+|+....
T Consensus        23 ~~y~~~is~GGlFI~T~~~~~~G~~V~l~l~Lp~~~~~i~~~GkVvWi~p~~   74 (117)
T 3cnr_A           23 SAYMPFVKGGGIFVPTPKRYMLGDEVFLLLTLPDSSERLPVAGKVIWTTPAG   74 (117)
T ss_dssp             HHEETTBTTCEEEEECCSCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC-
T ss_pred             HHhhcccCCCeEEEeeCCccCCCCEEEEEEEcCCCCceEEEEEEEEEecCCC
Confidence            345433 5789999999999999999998864332  356779999998643

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	94.61

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.61  E-value=0.32  Score=31.75  Aligned_cols=73  Identities=18%  Similarity=0.167  Sum_probs=53.3

Q ss_pred             eeEEeeccCCCCccceeEEEEEEEeCCCeEEEEEEEeecCChhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 031311           88 SFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS  161 (161)
Q Consensus        88 r~GFaYGTLpGH~e~GEE~F~Ve~~~dg~V~~~I~AFSRPa~~l~rlg~P~~r~~Qr~f~rry~~am~~~v~~~  161 (161)
                      ..-+.-..-++....++-.|.++-+++|. ..+...--.+..++..++.|+++..-++.....++.|++.+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~l~~~~~gt-~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~~A  147 (147)
T d2ns9a1          75 ATVKGSGRGAGSTLDFTLRFAVEPSGGGS-RVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGEA  147 (147)
T ss_dssp             EEEEEEEECSSEEEEEEEEEEEEEETTEE-EEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             eeEEEeeeccccceeeEEEEEEEecCCCc-EEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33444445566677888899998876654 44554445555678999999888887888899999999988764