Citrus Sinensis ID: 031348

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MLACKKKLILLVLALVLVSNLDLGSGGGFCATPVNGKDHGHDHQCDHGHHHHDHDHQHKEKKMLLPEELAEEEDMKLYGFGPYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGVRFFISHLCI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHcccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHcEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHEEEEcccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLACKKKLILLVLALVLVSnldlgsgggfcatpvngkdhghdhqcdhghhhhdhdhqhkekkmllpeelaeeedmklygfgpyyghdhdhghshhhhdrdsqlSGLALWVNALGCSLLVSLASLICLVLLPvifiqgkpskaVVDSLAVFGVRFFISHLCI
Flexible Loop (DISEMBL)
MLACKKKLILLVLALVLVSNLDLGSGGGFCATPVNGKDHGHDHQCDHGHHHHDHDHQHKEKKMLLPEELAEEEDMKLYGFGPYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGVRFFISHLCI
Low Complexity Region (SEG)
MlackkklillvlalvlvsnldlGSGGGFCATPVNGKdhghdhqcdhghhhhdhdhqhKEKKMLLPEELAEEEDMKLYGFGPYYghdhdhghshhhhdrdsQLSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGVRFFISHLCI
Disordered region (IsUnstruct)
***CKKKLILLVLALVLVSNLDLGSGGGFCATPV******************************************LYGFGPYY********************GLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGVRFFISHLC*
Disordered Region (DISOPRED)
****KKKLILLVLALVLVSNLDLGSGGGFCATPVNG***********************************EEDMKLYGFGPYYGHDHDHG*********SQLSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGVRFFISHLCI
Disordered Region (DISEMBL)
MLACKKKLILLVLALVLVSNLDLGSGGGFCATPVNGKD***********************KMLLPEELAEEEDMKLYGFGPYYGHDH**************LSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGVRFFISHLCI
Disordered Region (DISPRO)
MLACKKKLILLVLALVLVSNLDLGSGGGFCATPVNGKD******C*H*HHHHDHDHQHKEKKMLLPEELAEEEDMKLYGFGPYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGVRFFISHLCI
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLACKKKLILLVLALVLVSNLDLGSGGGFCATPVNGKDHGHDHQCDHGHHHHDHDHQHKEKKMLLPEELAEEEDMKLYGFGPYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGVRFFISHLCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q9M647	469	IAA-alanine resistance pr	yes	no	0.515	0.176	0.692	6e-28

>sp|Q9M647|IAR1_ARATH IAA-alanine resistance protein 1 OS=Arabidopsis thaliana GN=IAR1 PE=1 SV=3

 Score =  123 bits (308), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 72/91 (79%), Gaps = 8/91 (8%)

Query: 62  KMLLPEELAEEEDMKLYGFGPYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSL 121
           +M LPEELAEEEDM+L GFGP   HDHDH       +  S L+G ALW+NALGCSLLVSL
Sbjct: 69  EMKLPEELAEEEDMRLCGFGPCL-HDHDH-------ESSSTLTGFALWLNALGCSLLVSL 120

Query: 122 ASLICLVLLPVIFIQGKPSKAVVDSLAVFGV 152
           ASLICLVLLP++F+QGKPSK  VDSLA+FG 
Sbjct: 121 ASLICLVLLPIMFVQGKPSKWFVDSLALFGA 151

May participate in auxin metabolism or response. Probable transporter.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
297841515	400	hypothetical protein ARALYDRAFT_339044 [	0.509	0.205	0.711	1e-26
18408943	469	IAA-alanine resistance protein 1 [Arabid	0.515	0.176	0.692	3e-26
18175803	338	unknown protein [Arabidopsis thaliana]	0.515	0.245	0.703	4e-26
255561803	484	iaa-alanine resistance protein, putative	0.565	0.188	0.702	2e-23
225424476	483	PREDICTED: IAA-alanine resistance protei	0.540	0.180	0.707	7e-23
449445310	463	PREDICTED: IAA-alanine resistance protei	0.447	0.155	0.675	6e-21
449531485	164	PREDICTED: IAA-alanine resistance protei	0.440	0.432	0.683	3e-20
356512271	485	PREDICTED: IAA-alanine resistance protei	0.453	0.150	0.670	2e-18
212723536	483	uncharacterized protein LOC100192506 pre	0.658	0.219	0.503	2e-18
356525030	485	PREDICTED: IAA-alanine resistance protei	0.447	0.148	0.666	3e-18

>gi|297841515|ref|XP_002888639.1| hypothetical protein ARALYDRAFT_339044 [Arabidopsis lyrata subsp. lyrata] gi|297334480|gb|EFH64898.1| hypothetical protein ARALYDRAFT_339044 [Arabidopsis lyrata subsp. lyrata]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 72/90 (80%), Gaps = 8/90 (8%)

Query: 63  MLLPEELAEEEDMKLYGFGPYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSLA 122
           M LPEELAEEEDM+L GFGP   HDHDH       +  S L+GLALW+NALGCSLLVSLA
Sbjct: 1   MKLPEELAEEEDMRLCGFGPCL-HDHDH-------ESSSTLTGLALWLNALGCSLLVSLA 52

Query: 123 SLICLVLLPVIFIQGKPSKAVVDSLAVFGV 152
           SLICLVLLP++F+QGKPSK  VDSLA+FG 
Sbjct: 53  SLICLVLLPIMFVQGKPSKGFVDSLALFGA 82

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408943|ref|NP_564921.1| IAA-alanine resistance protein 1 [Arabidopsis thaliana] gi|152125832|sp|Q9M647.3|IAR1_ARATH RecName: Full=IAA-alanine resistance protein 1; Flags: Precursor gi|6942043|gb|AAF32299.1|AF216524_1 IAA-alanine resistance protein 1 [Arabidopsis thaliana] gi|21536769|gb|AAM61101.1| unknown [Arabidopsis thaliana] gi|25054860|gb|AAN71919.1| unknown protein [Arabidopsis thaliana] gi|110738182|dbj|BAF01022.1| hypothetical protein [Arabidopsis thaliana] gi|332196628|gb|AEE34749.1| IAA-alanine resistance protein 1 [Arabidopsis thaliana]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 72/91 (79%), Gaps = 8/91 (8%)

Query: 62  KMLLPEELAEEEDMKLYGFGPYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSL 121
           +M LPEELAEEEDM+L GFGP   HDHDH       +  S L+G ALW+NALGCSLLVSL
Sbjct: 69  EMKLPEELAEEEDMRLCGFGPCL-HDHDH-------ESSSTLTGFALWLNALGCSLLVSL 120

Query: 122 ASLICLVLLPVIFIQGKPSKAVVDSLAVFGV 152
           ASLICLVLLP++F+QGKPSK  VDSLA+FG 
Sbjct: 121 ASLICLVLLPIMFVQGKPSKWFVDSLALFGA 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18175803|gb|AAL59930.1| unknown protein [Arabidopsis thaliana]

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/91 (70%), Positives = 72/91 (79%), Gaps = 8/91 (8%)

Query: 62  KMLLPEELAEEEDMKLYGFGPYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSL 121
           +M LPEELAEEEDM+L GFGP   HDHDH  S       S L+G ALW+NALGCSLLVSL
Sbjct: 69  EMKLPEELAEEEDMRLCGFGPCL-HDHDHESS-------STLTGFALWLNALGCSLLVSL 120

Query: 122 ASLICLVLLPVIFIQGKPSKAVVDSLAVFGV 152
           ASLICLVLLP++F+QGKPSK  VDSLA+FG 
Sbjct: 121 ASLICLVLLPIMFVQGKPSKWFVDSLALFGA 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561803|ref|XP_002521911.1| iaa-alanine resistance protein, putative [Ricinus communis] gi|223538949|gb|EEF40547.1| iaa-alanine resistance protein, putative [Ricinus communis]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 79/101 (78%), Gaps = 10/101 (9%)

Query: 58  HKEKKMLLPEELAEEEDMKLYGFGPYYGHDHDHGHSH------HHHDRDSQLSGLALWVN 111
             E K  LPEELAEEEDMKLYGF  Y+ H HDH H H      +HHD   +L+GLALW +
Sbjct: 60  RIESK--LPEELAEEEDMKLYGFSNYHHHHHDHDHDHGHSHSPYHHDL--KLTGLALWSH 115

Query: 112 ALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGV 152
           ALGCSLLVSLASLICL++LPVIFIQGKPSKAVVDSLA+FG 
Sbjct: 116 ALGCSLLVSLASLICLIILPVIFIQGKPSKAVVDSLALFGA 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424476|ref|XP_002285173.1| PREDICTED: IAA-alanine resistance protein 1 [Vitis vinifera] gi|297737576|emb|CBI26777.3| unnamed protein product [Vitis vinifera]

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 71/89 (79%), Gaps = 2/89 (2%)

Query: 65  LPEELAEEEDMKLYGFGPYYGHDHDHGHSHHHHDRDSQ--LSGLALWVNALGCSLLVSLA 122
           LPEELAEEED+KLYG G +Y H   H H H H        LSG+ LWV+A+GCSLLVS+A
Sbjct: 70  LPEELAEEEDLKLYGLGSHYNHHDSHDHDHDHDRDAHDHGLSGVGLWVHAMGCSLLVSMA 129

Query: 123 SLICLVLLPVIFIQGKPSKAVVDSLAVFG 151
           SLICL++LPVIFIQGKPSKAVVDSLAVFG
Sbjct: 130 SLICLIILPVIFIQGKPSKAVVDSLAVFG 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445310|ref|XP_004140416.1| PREDICTED: IAA-alanine resistance protein 1-like [Cucumis sativus]

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 63/80 (78%), Gaps = 8/80 (10%)

Query: 74  DMKLYGFG-PYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASLICLVLLPV 132
           DM+LYGFG PY  HDH+   S       S LSGL LW+ ALGCSLL+S+ASLICL+LLPV
Sbjct: 70  DMRLYGFGRPYVEHDHESVGS-------SDLSGLGLWIRALGCSLLISMASLICLILLPV 122

Query: 133 IFIQGKPSKAVVDSLAVFGV 152
           IF++GKPSKAVVDSLA+FG 
Sbjct: 123 IFVRGKPSKAVVDSLALFGA 142

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531485|ref|XP_004172716.1| PREDICTED: IAA-alanine resistance protein 1-like [Cucumis sativus]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 63/79 (79%), Gaps = 8/79 (10%)

Query: 74  DMKLYGFG-PYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASLICLVLLPV 132
           DM+LYGFG PY  HDH+   S       S LSGL LW+ ALGCSLL+S+ASLICL+LLPV
Sbjct: 70  DMRLYGFGRPYVEHDHESVGS-------SDLSGLGLWIRALGCSLLISMASLICLILLPV 122

Query: 133 IFIQGKPSKAVVDSLAVFG 151
           IF++GKPSKAVVDSLA+FG
Sbjct: 123 IFVRGKPSKAVVDSLALFG 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512271|ref|XP_003524844.1| PREDICTED: IAA-alanine resistance protein 1-like [Glycine max]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 63/79 (79%), Gaps = 6/79 (7%)

Query: 74  DMKLYGFGPYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASLICLVLLPVI 133
           DMKLYGFG  + H HDHG         ++LSGL LW+NALGCS LVS+ASL+CL++LPVI
Sbjct: 81  DMKLYGFGLPHHHHHDHGI------EAAELSGLGLWLNALGCSFLVSMASLVCLIILPVI 134

Query: 134 FIQGKPSKAVVDSLAVFGV 152
           F+QGKPSKAVVDSLA+FG 
Sbjct: 135 FVQGKPSKAVVDSLALFGA 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212723536|ref|NP_001131198.1| uncharacterized protein LOC100192506 precursor [Zea mays] gi|194690844|gb|ACF79506.1| unknown [Zea mays] gi|194700076|gb|ACF84122.1| unknown [Zea mays] gi|194701324|gb|ACF84746.1| unknown [Zea mays] gi|194706780|gb|ACF87474.1| unknown [Zea mays] gi|195626032|gb|ACG34846.1| zinc transporter SLC39A7 [Zea mays] gi|414869852|tpg|DAA48409.1| TPA: Zinc transporter SLC39A7 isoform 1 [Zea mays] gi|414869853|tpg|DAA48410.1| TPA: Zinc transporter SLC39A7 isoform 2 [Zea mays]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 79/127 (62%), Gaps = 21/127 (16%)

Query: 47  HGHHHHDHDHQHK--------------------EKKMLLPEELAEEEDMKLYGFG-PYYG 85
           HG  H  HDH H                     E + LLPEE+AEE D++L  FG   + 
Sbjct: 39  HGEPHERHDHGHSCGGGADHEHHHHHHHGHGHGEIQRLLPEEMAEEADLELESFGYEDHD 98

Query: 86  HDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVD 145
           H H H H HHH   D + S + +W++A+GCSLLVS+ASL+CLVLLPVIF +GKPSKA+VD
Sbjct: 99  HGHHHHHHHHHSHGDMETSPMGVWLSAMGCSLLVSMASLVCLVLLPVIFFKGKPSKAIVD 158

Query: 146 SLAVFGV 152
           SLAVFG 
Sbjct: 159 SLAVFGA 165

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525030|ref|XP_003531130.1| PREDICTED: IAA-alanine resistance protein 1-like [Glycine max]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/78 (66%), Positives = 61/78 (78%), Gaps = 6/78 (7%)

Query: 74  DMKLYGFGPYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASLICLVLLPVI 133
           DMKLYGFG        H H H H    ++LSGL LW+NALGCS LVS+ASL+CL++LPVI
Sbjct: 80  DMKLYGFG------FPHHHHHDHDIEAAELSGLGLWLNALGCSFLVSMASLVCLIILPVI 133

Query: 134 FIQGKPSKAVVDSLAVFG 151
           F+QGKPSKAVVDSLA+FG
Sbjct: 134 FVQGKPSKAVVDSLALFG 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2200266	469	IAR1 "IAA-ALANINE RESISTANT 1"	0.509	0.174	0.633	2.6e-22

TAIR|locus:2200266 IAR1 "IAA-ALANINE RESISTANT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 57/90 (63%), Positives = 65/90 (72%)

Query:    62 KMLLPEELAEEEDMKLYGFGPYYXXXXXXXXXXXXXXXXXQLSGLALWVNALGCSLLVSL 121
             +M LPEELAEEEDM+L GFGP                    L+G ALW+NALGCSLLVSL
Sbjct:    69 EMKLPEELAEEEDMRLCGFGPCLHDHDHESSST--------LTGFALWLNALGCSLLVSL 120

Query:   122 ASLICLVLLPVIFIQGKPSKAVVDSLAVFG 151
             ASLICLVLLP++F+QGKPSK  VDSLA+FG
Sbjct:   121 ASLICLVLLPIMFVQGKPSKWFVDSLALFG 150


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.143   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       101   0.00091  102 3  11 22  0.37    30
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  532 (57 KB)
  Total size of DFA:  108 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.09u 0.16s 9.25t   Elapsed:  00:00:00
  Total cpu time:  9.09u 0.16s 9.25t   Elapsed:  00:00:00
  Start:  Fri May 10 22:27:53 2013   End:  Fri May 10 22:27:53 2013

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0030001 "metal ion transport" evidence=IEA;ISS

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pg.C_scaffold_2001143 annotation not avaliable (400 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
PLN03020	556	PLN03020, PLN03020, low-temperature-induced protei	4e-05
PRK13263	206	PRK13263, ureE, urease accessory protein UreE; Pro	4e-04
PRK09545	311	PRK09545, znuA, high-affinity zinc transporter per	0.004

>gnl|CDD|215541 PLN03020, PLN03020, low-temperature-induced protein; Provisional

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 36 GKDHGHDHQCDH---GHHHHDHDHQHKEKKMLLPEELAEEEDMK----LYGFGPYYGHDH 88
          G+ HGH ++ D    G H       H EKK +L +   + + +K     +G    +GH H
Sbjct: 2  GRPHGHHYEEDPHNVGLHSATEGEDHHEKKSVLKKVKDKAKKIKDTITKHG----HGHHH 57

Query: 89 DHGHSHHHHD 98
          D       HD
Sbjct: 58 DEHRVPDDHD 67

Length = 556

>gnl|CDD|237323 PRK13263, ureE, urease accessory protein UreE; Provisional

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 26/69 (37%)

Query: 31  ATPVNGKDHGHDHQCDHGHHHHDHDHQHKEKKMLLPEELAEEEDMKLYGFGPYYGHDHDH 90
           A  V  + HGH H      H HDHDH H                           H    
Sbjct: 164 AQQVFHEHHGHSHSHSDHDHDHDHDHDHV--------------------------HGPGC 197

Query: 91  GHSHHHHDR 99
           GH HHHH R
Sbjct: 198 GHGHHHHHR 206

Length = 206

>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 7/24 (29%), Positives = 8/24 (33%)

Query: 35  NGKDHGHDHQCDHGHHHHDHDHQH 58
              D  HD   DH  H    +  H
Sbjct: 116 GAHDDHHDDDHDHAGHEKSDEDHH 139

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
KOG2693	453	consensus Putative zinc transporter [Inorganic ion	99.19
KOG2694	361	consensus Putative zinc transporter [Inorganic ion	98.55
PF02535	317	Zip: ZIP Zinc transporter; InterPro: IPR003689 The	96.7
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	87.18
KOG1484	354	consensus Putative Zn2+ transporter MSC2 (cation d	81.1

>KOG2693 consensus Putative zinc transporter [Inorganic ion transport and metabolism]

Probab=99.19  E-value=1.5e-11  Score=111.10  Aligned_cols=84  Identities=23%  Similarity=0.268  Sum_probs=67.8

Q ss_pred             hhhcChhhhhhhcccceeccCCCCCCCCCCCCCCCCCCCCCCCcchhhhHHHhhhhHHHhhhHhhhhhhhccccccCCCC
Q 031348           61 KKMLLPEELAEEEDMKLYGFGPYYGHDHDHGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPS  140 (161)
Q Consensus        61 ~~~~lpeelaee~d~~~~~fg~~~~H~h~h~h~H~h~h~~~~~s~~~LW~~ALGsTlLIS~APf~iLf~IPv~~~~g~~~  140 (161)
                      ...+-|++|+++ |...+..=.            +..+.  +....++|+|++.||++||++|++.+++||+.. +++..
T Consensus       100 ~~~~~p~~l~q~-~~~~c~~~~------------~~~~~--~~~~~~~w~~g~~a~~lisl~~~l~l~lvP~~~-~~~~~  163 (453)
T KOG2693|consen  100 FHQLCPALLQQL-DSGLCTSLM------------LFSKK--KTNTKELWLYGILATLLISLAPLLGLLLVPLRK-NSKKK  163 (453)
T ss_pred             hhccCHHHHHhh-hcccccccc------------ccccC--CCcceeeEEechHHHHHHHHHHhhheeeccccc-cchhH
Confidence            446689999988 776666510            11111  122578999999999999999999999999997 77788


Q ss_pred             hhHHHHHHhccccccccccC
Q 031348          141 KAVVDSLAVFGVRFFISHLC  160 (161)
Q Consensus       141 q~lLKVLLsFAsGGLLGDA~  160 (161)
                      +.+++.+++||+|+|+|||+
T Consensus       164 ~~~l~~l~a~a~gtL~gDa~  183 (453)
T KOG2693|consen  164 LELLIFLLALAVGTLLGDAL  183 (453)
T ss_pred             HHHHHHHHHHHHhhhhHHHH
Confidence            99999999999999999996

>KOG2694 consensus Putative zinc transporter [Inorganic ion transport and metabolism]

Probab=98.55  E-value=1.5e-08  Score=89.51  Aligned_cols=55  Identities=20%  Similarity=0.353  Sum_probs=49.3

Q ss_pred             hhhhHHHhhhhHHHhhhHhhhhhhhccccc---cCCCChhHHHHHHhccccccccccC
Q 031348          106 LALWVNALGCSLLVSLASLICLVLLPVIFI---QGKPSKAVVDSLAVFGVRFFISHLC  160 (161)
Q Consensus       106 ~~LW~~ALGsTlLIS~APf~iLf~IPv~~~---~g~~~q~lLKVLLsFAsGGLLGDA~  160 (161)
                      .+.|++++..+++|++..+|.||+||.+..   ++++.+..||+||+||.||||||+|
T Consensus        65 ~d~Wi~sLlGs~~vglsGifPl~~iP~e~~~~l~s~ag~~rL~~LLsFAiGgLLgdVF  122 (361)
T KOG2694|consen   65 EDMWIYSLLGSSLVGLSGIFPLFLIPAEIHVLLSSSAGQRRLNLLLSFAIGGLLGDVF  122 (361)
T ss_pred             cchhHHHHhhhHHHhhcccceeeeechhhhhhccCchhHHHHHHHHHHHHhhHHHHHH
Confidence            457999999999999999999999999851   2567899999999999999999987

>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms []

Probab=96.70  E-value=0.00067  Score=54.75  Aligned_cols=53  Identities=17%  Similarity=0.230  Sum_probs=46.3

Q ss_pred             hhhHHHhhhhHHHhhhHhhhhhhhccccccCCCChhHHHHHHhccccccccccC
Q 031348          107 ALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGVRFFISHLC  160 (161)
Q Consensus       107 ~LW~~ALGsTlLIS~APf~iLf~IPv~~~~g~~~q~lLKVLLsFAsGGLLGDA~  160 (161)
                      .+|+.++.+++++|+++.++-++++... +.+.++.++..+.+|++|.|||+++
T Consensus         2 ~~ki~~~~~i~~~s~lg~~~P~~~~~~~-~~~~~~~~l~~~~~fa~GvlL~~a~   54 (317)
T PF02535_consen    2 GLKIVAILAIFIVSLLGGLLPLLIRKFS-KNRLNKRILSLLNAFAAGVLLGTAF   54 (317)
T ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHhh-ccccchHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999888888764 2256899999999999999999876

; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=87.18  E-value=0.53  Score=40.97  Aligned_cols=16  Identities=19%  Similarity=0.042  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHhhccc
Q 031348            8 LILLVLALVLVSNLDL   23 (161)
Q Consensus         8 ~~~~~~~~~~~~~~~~   23 (161)
                      .++-++++.++..+.+
T Consensus        92 ~~S~~lii~lGl~ll~  107 (279)
T PRK10019         92 LISAVIIISTAFWMFW  107 (279)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3455666666666654

>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]

Probab=81.10  E-value=1.6  Score=39.92  Aligned_cols=21  Identities=38%  Similarity=0.396  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHhhcccCCCCCCCCCC
Q 031348            8 LILLVLALVLVSNLDLGSGGGFCATP   33 (161)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~c~~~   33 (161)
                      +.+||-+++++.||+     |-|+|.
T Consensus       139 rllvVS~~gllvnLv-----Gi~aF~  159 (354)
T KOG1484|consen  139 RLLVVSVLGLLVNLV-----GILAFS  159 (354)
T ss_pred             eeEEeeHHHHHHHHH-----HHHHhc
Confidence            345777888888886     567776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
1pq4_A	291	Periplasmic binding protein component of AN ABC T	2e-05

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 11/69 (15%), Positives = 14/69 (20%), Gaps = 24/69 (34%)

Query: 32  TPVNGKDHGHDHQCDHGHHHHDHDHQHKEKKMLLPEELAEEEDMKLYGFGPYYGHDHDHG 91
           TP+  + H H H  + GH  H HD                                    
Sbjct: 87  TPLEMEKHDHSHGEEEGHDDHSHDGHDHG------------------------SESEKEK 122

Query: 92  HSHHHHDRD 100
                   D
Sbjct: 123 AKGALMVAD 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
4dve_A	198	Biotin transporter BIOY; ECF-transport, ligand-bin	87.98

>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}

Probab=87.98  E-value=0.048  Score=43.83  Aligned_cols=42  Identities=31%  Similarity=0.449  Sum_probs=17.8

Q ss_pred             CCCCCCCCCCCCCCcchhhhHHHhhhhHHHhhhHh--hhhhhhcc
Q 031348           90 HGHSHHHHDRDSQLSGLALWVNALGCSLLVSLASL--ICLVLLPV  132 (161)
Q Consensus        90 h~h~H~h~h~~~~~s~~~LW~~ALGsTlLIS~APf--~iLf~IPv  132 (161)
                      |+|+|||+..+.+.++ ++=.-|+++.+++-.+.+  +.+.+.|+
T Consensus         3 ~~~~~~~am~~~~k~r-~l~~~alfaAliavla~i~~Ipip~~pV   46 (198)
T 4dve_A            3 HHHHHHHAMTNNQKVK-TLTYSAFMTAFIIILGFLPGIPIGFIPV   46 (198)
T ss_dssp             -------CCCHHHHHH-HHHHHHHHHHHHHHHTTSCCBCCSSSSC
T ss_pred             cchhhHHHhhccHHHH-HHHHHHHHHHHHHHHHHhccCCCCCCCc
Confidence            3344556666554333 344457777665544432  33444444

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00