Citrus Sinensis ID: 031355

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPKTKH
cccccccEEEEEEcccHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHccccEEEEcccccccccccEEccHHHHHHccccccEEEEccccccc
cccccccEEEEEEcccHHHHHHHHHHHHHHccccccccccEEEEEEEcccccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHccccEEEEcccccHHHHHHHHccHcHHHHccccccEEEEEcccccc
MATAETQTMVVGIDDSEQSTYALQWTLDHffanstvnppfkLVIVHarpspsaviglagpgavevlphvdsDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPKTKH
mataetqtmvvgiddSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKeicssksvhdFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTvmivkrpktkh
MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPKTKH
**********VGI****QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIV*******
****ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTV***KR*****
********MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPKTKH
*****TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPKTKH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query161 2.2.26 [Sep-21-2011]
Q8LGG8175 Universal stress protein no no 0.745 0.685 0.261 2e-09
Q57951170 Universal stress protein yes no 0.639 0.605 0.317 7e-08
P72745108 Universal stress protein N/A no 0.366 0.546 0.372 5e-06
O53472 294 Universal stress protein yes no 0.472 0.258 0.352 6e-05
P42297148 Universal stress protein yes no 0.863 0.939 0.296 9e-05
O06188 272 Universal stress protein no no 0.801 0.474 0.251 0.0003
O06189 297 Universal stress protein no no 0.838 0.454 0.315 0.0003
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2 Back     alignment and function desciption
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 29/149 (19%)

Query: 22  ALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVV 81
           A +WTL+    ++T +  FK++++H +     V+   G   V+ +     DF+       
Sbjct: 30  AFEWTLEKIVRSNTSD--FKILLLHVQ-----VVDEDGFDDVDSIYASPEDFR------- 75

Query: 82  EEAKEICSSKSVH--DFVVE------------VVEGDARNILCEAVEKHHASILVVGSHG 127
            + ++   +K +H  +F V             +  GD ++++C+ V++     LVVGS G
Sbjct: 76  -DMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRG 134

Query: 128 YGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156
            G  ++  +G+VS +C  HA C VM +KR
Sbjct: 135 LGRFQKVFVGTVSAFCVKHAECPVMTIKR 163

Arabidopsis thaliana (taxid: 3702)
>sp|Q57951|Y531_METJA Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0531 PE=3 SV=1 Back     alignment and function description
>sp|P72745|Y1101_SYNY3 Universal stress protein Slr1101 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1101 PE=3 SV=1 Back     alignment and function description
>sp|O53472|Y2026_MYCTU Universal stress protein Rv2026c/MT2085 OS=Mycobacterium tuberculosis GN=Rv2026c PE=2 SV=1 Back     alignment and function description
>sp|P42297|YXIE_BACSU Universal stress protein YxiE OS=Bacillus subtilis (strain 168) GN=yxiE PE=3 SV=1 Back     alignment and function description
>sp|O06188|Y2624_MYCTU Universal stress protein Rv2624c/MT2699 OS=Mycobacterium tuberculosis GN=Rv2624c PE=1 SV=1 Back     alignment and function description
>sp|O06189|Y2623_MYCTU Universal stress protein Rv2623/MT2698 OS=Mycobacterium tuberculosis GN=Rv2623 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query161
255564142161 conserved hypothetical protein [Ricinus 1.0 1.0 0.776 3e-69
449436499162 PREDICTED: universal stress protein MJ05 1.0 0.993 0.771 6e-69
359480262161 PREDICTED: universal stress protein MJ05 1.0 1.0 0.776 2e-67
38016525151 fiber protein Fb19, partial [Gossypium b 0.937 1.0 0.807 5e-66
224131134162 predicted protein [Populus trichocarpa] 1.0 0.993 0.753 8e-65
194466125181 universal stress protein [Arachis hypoga 0.993 0.883 0.730 7e-64
297743875182 unnamed protein product [Vitis vinifera] 1.0 0.884 0.782 2e-63
225437346161 PREDICTED: universal stress protein MJ05 1.0 1.0 0.782 3e-63
297828493162 universal stress protein family protein 0.993 0.987 0.732 3e-62
357442529164 Universal stress protein [Medicago trunc 0.987 0.969 0.710 3e-62
>gi|255564142|ref|XP_002523068.1| conserved hypothetical protein [Ricinus communis] gi|223537630|gb|EEF39253.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 125/161 (77%), Positives = 144/161 (89%)

Query: 1   MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGP 60
           MATAE Q M+VGIDDSE S YAL+WTLDHFF     + PFKLV+VH++P+P++ +GLAGP
Sbjct: 1   MATAEKQVMIVGIDDSEHSVYALEWTLDHFFVPFGPSSPFKLVVVHSKPTPASAVGLAGP 60

Query: 61  GAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASI 120
           GA EVLP+VD+D K+IAARVVE+AKE C+SKSV+D V EVVEGDARN+LCEAVEKHHASI
Sbjct: 61  GAAEVLPYVDADLKRIAARVVEKAKEKCTSKSVNDVVYEVVEGDARNVLCEAVEKHHASI 120

Query: 121 LVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPKTKH 161
           LVVGSHGYGAIKRAVLGSVSDYC+HHAHC+VMIVKRPK KH
Sbjct: 121 LVVGSHGYGAIKRAVLGSVSDYCSHHAHCSVMIVKRPKIKH 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449436499|ref|XP_004136030.1| PREDICTED: universal stress protein MJ0531-like [Cucumis sativus] gi|449532390|ref|XP_004173164.1| PREDICTED: universal stress protein MJ0531-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359480262|ref|XP_002265742.2| PREDICTED: universal stress protein MJ0531-like isoform 2 [Vitis vinifera] gi|297743874|emb|CBI36844.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|38016525|gb|AAR07598.1| fiber protein Fb19, partial [Gossypium barbadense] Back     alignment and taxonomy information
>gi|224131134|ref|XP_002321009.1| predicted protein [Populus trichocarpa] gi|222861782|gb|EEE99324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|194466125|gb|ACF74293.1| universal stress protein [Arachis hypogaea] Back     alignment and taxonomy information
>gi|297743875|emb|CBI36845.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225437346|ref|XP_002265489.1| PREDICTED: universal stress protein MJ0531 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297828493|ref|XP_002882129.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297327968|gb|EFH58388.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357442529|ref|XP_003591542.1| Universal stress protein [Medicago truncatula] gi|355480590|gb|AES61793.1| Universal stress protein [Medicago truncatula] gi|388501996|gb|AFK39064.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query161
TAIR|locus:2043273162 AT2G47710 "AT2G47710" [Arabido 0.993 0.987 0.720 8.1e-60
TAIR|locus:2154369150 AT5G49050 "AT5G49050" [Arabido 0.732 0.786 0.491 4.5e-27
TAIR|locus:2024291171 AT1G09740 "AT1G09740" [Arabido 0.913 0.859 0.425 5.7e-27
TAIR|locus:2076381204 AT3G58450 "AT3G58450" [Arabido 0.925 0.730 0.372 2.4e-21
TAIR|locus:2096089162 AT3G62550 "AT3G62550" [Arabido 0.931 0.925 0.349 2.5e-19
TAIR|locus:2199282160 AT1G68300 "AT1G68300" [Arabido 0.944 0.95 0.35 1.2e-17
TAIR|locus:2081531226 AT3G11930 "AT3G11930" [Arabido 0.919 0.654 0.351 4.7e-16
TAIR|locus:2200036242 AT1G11360 [Arabidopsis thalian 0.931 0.619 0.316 1.3e-15
TAIR|locus:2131719260 PHOS34 "AT4G27320" [Arabidopsi 0.863 0.534 0.319 3.8e-14
TAIR|locus:2147319242 PHOS32 "AT5G54430" [Arabidopsi 0.863 0.574 0.308 7.9e-14
TAIR|locus:2043273 AT2G47710 "AT2G47710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 116/161 (72%), Positives = 135/161 (83%)

Query:     1 MATAETQT-MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAG 59
             MAT + ++ MVVG+DDSEQSTYAL+WTLD FFA    N PFKL IVHA+P+  + +GLAG
Sbjct:     1 MATGDGKSVMVVGVDDSEQSTYALEWTLDRFFAPYAPNYPFKLFIVHAKPNAVSAVGLAG 60

Query:    60 PGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHAS 119
             PG  EV+P+VD+D K  AA+VVE+AK IC S+SVH  V+EV EGDARNILCE V+KHHAS
Sbjct:    61 PGTAEVVPYVDADLKHTAAKVVEKAKAICQSRSVHGAVIEVFEGDARNILCEVVDKHHAS 120

Query:   120 ILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPKTK 160
             ILVVGSHGYGAIKRAVLGS SDYCAHHAHC+VMIVK+PK K
Sbjct:   121 ILVVGSHGYGAIKRAVLGSTSDYCAHHAHCSVMIVKKPKIK 161
GO:0003674 "molecular_function" evidence=ND
GO:0005773 "vacuole" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0002238 "response to molecule of fungal origin" evidence=RCA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2154369 AT5G49050 "AT5G49050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024291 AT1G09740 "AT1G09740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076381 AT3G58450 "AT3G58450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096089 AT3G62550 "AT3G62550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199282 AT1G68300 "AT1G68300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081531 AT3G11930 "AT3G11930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200036 AT1G11360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131719 PHOS34 "AT4G27320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147319 PHOS32 "AT5G54430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027986001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (161 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 9e-23
pfam00582139 pfam00582, Usp, Universal stress protein family 1e-21
COG0589154 COG0589, UspA, Universal stress protein UspA and r 4e-16
cd01989146 cd01989, STK_N, The N-terminal domain of Eukaryoti 3e-06
cd01988132 cd01988, Na_H_Antiporter_C, The C-terminal domain 6e-05
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information 
 Score = 87.0 bits (216), Expect = 9e-23
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 17/147 (11%)

Query: 8   TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLP 67
            ++V +D SE+S  AL+W               +LV++H    P +          E   
Sbjct: 1   RILVAVDGSEESERALRWAARLARRLGA-----ELVLLHVVDPPPSSAAELAELLEEE-- 53

Query: 68  HVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHG 127
                    A  ++E  +E  +   V      V+EGD    + EA E+  A ++V+GS G
Sbjct: 54  ---------ARALLEALREALAEAGVK-VETVVLEGDPAEAILEAAEELGADLIVMGSRG 103

Query: 128 YGAIKRAVLGSVSDYCAHHAHCTVMIV 154
              ++R +LGSV++    HA C V++V
Sbjct: 104 RSGLRRLLLGSVAERVLRHAPCPVLVV 130

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity. Length = 130
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information
>gnl|CDD|223662 COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>gnl|CDD|238946 cd01988, Na_H_Antiporter_C, The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 161
PRK15456142 universal stress protein UspG; Provisional 99.96
PRK15005144 universal stress protein F; Provisional 99.96
PRK09982142 universal stress protein UspD; Provisional 99.96
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.95
PRK15118144 universal stress global response regulator UspA; P 99.95
PRK10116142 universal stress protein UspC; Provisional 99.94
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.93
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.93
PRK11175 305 universal stress protein UspE; Provisional 99.92
cd01987124 USP_OKCHK USP domain is located between the N-term 99.92
PRK11175305 universal stress protein UspE; Provisional 99.9
COG0589154 UspA Universal stress protein UspA and related nuc 99.88
cd00293130 USP_Like Usp: Universal stress protein family. The 99.88
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 99.7
PRK10490 895 sensor protein KdpD; Provisional 99.48
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 99.42
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 98.73
PLN03159 832 cation/H(+) antiporter 15; Provisional 98.15
PLN03159832 cation/H(+) antiporter 15; Provisional 97.93
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 97.38
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 96.78
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 96.72
PRK12342 254 hypothetical protein; Provisional 96.38
PRK03359 256 putative electron transfer flavoprotein FixA; Revi 95.84
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 95.79
COG0037 298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 95.41
COG2086 260 FixA Electron transfer flavoprotein, beta subunit 95.19
TIGR00591 454 phr2 photolyase PhrII. All proteins in this family 94.9
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 94.69
PRK06029185 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Prov 94.59
PRK07313182 phosphopantothenoylcysteine decarboxylase; Validat 94.32
PRK05579 399 bifunctional phosphopantothenoylcysteine decarboxy 94.26
COG0041162 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m 94.21
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 93.37
TIGR01162156 purE phosphoribosylaminoimidazole carboxylase, Pur 93.0
PRK10660 436 tilS tRNA(Ile)-lysidine synthetase; Provisional 92.83
TIGR02113177 coaC_strep phosphopantothenoylcysteine decarboxyla 92.56
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 92.44
PRK13982 475 bifunctional SbtC-like/phosphopantothenoylcysteine 92.01
KOG1650769 consensus Predicted K+/H+-antiporter [Inorganic io 91.77
TIGR00421181 ubiX_pad polyprenyl P-hydroxybenzoate and phenylac 91.66
TIGR03556 471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 91.64
PF02441129 Flavoprotein: Flavoprotein; InterPro: IPR003382 Th 90.69
PRK08305196 spoVFB dipicolinate synthase subunit B; Reviewed 90.51
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 90.44
PF00731150 AIRC: AIR carboxylase; InterPro: IPR000031 Phospho 90.27
PRK05253 301 sulfate adenylyltransferase subunit 2; Provisional 90.15
PF1316795 GTP-bdg_N: GTP-binding GTPase N-terminal 89.58
COG1066 456 Sms Predicted ATP-dependent serine protease [Postt 89.35
PRK02929 499 L-arabinose isomerase; Provisional 89.16
cd01985181 ETF The electron transfer flavoprotein (ETF) serve 88.95
TIGR02765 429 crypto_DASH cryptochrome, DASH family. Photolyases 88.87
PF03652135 UPF0081: Uncharacterised protein family (UPF0081); 88.8
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 88.1
TIGR02852187 spore_dpaB dipicolinic acid synthetase, B subunit. 87.14
PRK00109138 Holliday junction resolvase-like protein; Reviewed 86.22
PRK10867 433 signal recognition particle protein; Provisional 86.0
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844100 GARS_N: Phosphoribosylglycinamide synthetase, N do 85.89
PF02601 319 Exonuc_VII_L: Exonuclease VII, large subunit; Inte 85.48
COG0452 392 Dfp Phosphopantothenoylcysteine synthetase/decarbo 85.45
COG2876 286 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( 84.71
COG0541 451 Ffh Signal recognition particle GTPase [Intracellu 84.65
COG0036220 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate 84.56
TIGR00930 953 2a30 K-Cl cotransporter. 84.54
COG336071 Uncharacterized conserved protein [Function unknow 84.26
cd01995169 ExsB ExsB is a transcription regulator related pro 83.3
TIGR00521 390 coaBC_dfp phosphopantothenoylcysteine decarboxylas 82.64
PLN02948577 phosphoribosylaminoimidazole carboxylase 81.32
cd01713173 PAPS_reductase This domain is found in phosphoaden 80.9
COG1927 277 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltet 80.76
TIGR00250130 RNAse_H_YqgF RNAse H-fold protein YqgF. This prote 80.67
cd08550 349 GlyDH-like Glycerol_dehydrogenase-like. Families o 80.62
cd03557 484 L-arabinose_isomerase L-Arabinose isomerase (AI) c 80.61
TIGR01425 429 SRP54_euk signal recognition particle protein SRP5 80.12
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information 
Probab=99.96  E-value=4e-28  Score=158.69  Aligned_cols=140  Identities=19%  Similarity=0.212  Sum_probs=108.1

Q ss_pred             CceeEEEEecCCh--hHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHHH
Q 031355            5 ETQTMVVGIDDSE--QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE   82 (161)
Q Consensus         5 ~~~~ilv~~d~s~--~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   82 (161)
                      |++|||||+|+|+  .+.+++++|..+|+..      ++++++||++...... ....  ......+.+...+..++.++
T Consensus         1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~~------~~l~llhv~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~   71 (142)
T PRK15456          1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDD------GVIHLLHVLPGSASLS-LHRF--AADVRRFEEHLQHEAEERLQ   71 (142)
T ss_pred             CCccEEEeccCCchhHHHHHHHHHHHHHhcC------CeEEEEEEecCccccc-cccc--ccchhhHHHHHHHHHHHHHH
Confidence            4899999999994  8999999999999863      4999999997653211 1000  01112233445555666666


Q ss_pred             HHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355           83 EAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK  155 (161)
Q Consensus        83 ~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~  155 (161)
                      ++.+.+...+ .++++++..|++.+.|.++++++++||||||+++++ +.++++||++++|+++++||||+||
T Consensus        72 ~~~~~~~~~~-~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~~pVLvV~  142 (142)
T PRK15456         72 TMVSHFTIDP-SRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVVR  142 (142)
T ss_pred             HHHHHhCCCC-cceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCCCCEEEeC
Confidence            6665554333 358899999999999999999999999999999976 7889999999999999999999996

>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional Back     alignment and domain information
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated Back     alignment and domain information
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated Back     alignment and domain information
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein Back     alignment and domain information
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN [] Back     alignment and domain information
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal Back     alignment and domain information
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK02929 L-arabinose isomerase; Provisional Back     alignment and domain information
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit Back     alignment and domain information
>PRK00109 Holliday junction resolvase-like protein; Reviewed Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 Back     alignment and domain information
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>COG3360 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd01995 ExsB ExsB is a transcription regulator related protein Back     alignment and domain information
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion] Back     alignment and domain information
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF Back     alignment and domain information
>cd08550 GlyDH-like Glycerol_dehydrogenase-like Back     alignment and domain information
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
2gm3_A175 Crystal Structure Of An Universal Stress Protein Fa 1e-09
3cis_A 309 The Crystal Structure Of Rv2623 From Mycobacterium 2e-05
2jax_A 305 Universal Stress Protein Rv2623 From Mycobaterium T 7e-05
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family Protein From Arabidopsis Thaliana At3g01520 With Amp Bound Length = 175 Back     alignment and structure 
Iteration: 1

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 22  ALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVV 81
           A +WTL+    ++T +  FK++++H +     V+   G   V+ +     DF+       
Sbjct: 30  AFEWTLEKIVRSNTSD--FKILLLHVQ-----VVDEDGFDDVDSIYASPEDFR------- 75
Query: 82  EEAKEICSSKSVH--DFVVE------------VVEGDARNILCEAVEKHHASILVVGSHG 127
            + ++   +K +H  +F V             +  GD ++++C+ V++     LVVGS G
Sbjct: 76  -DXRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRG 134
Query: 128 YGAIKRAVLGSVSDYCAHHAHCTVMIVKR 156
            G  ++  +G+VS +C  HA C V  +KR
Sbjct: 135 LGRFQKVFVGTVSAFCVKHAECPVXTIKR 163
>pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623 From Mycobacterium Tuberculosis Length = 309 Back     alignment and structure
>pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium Tuberculosis Length = 305 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query161
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 7e-41
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 4e-33
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 2e-27
2z08_A137 Universal stress protein family; uncharacterized c 6e-24
3s3t_A146 Nucleotide-binding protein, universal stress PROT 2e-23
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 2e-23
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 2e-21
3loq_A 294 Universal stress protein; structural genomics, PSI 4e-20
3loq_A294 Universal stress protein; structural genomics, PSI 9e-16
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 7e-20
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 2e-19
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 3e-16
3tnj_A150 Universal stress protein (USP); structural genomic 6e-19
3dlo_A155 Universal stress protein; unknown function, struct 3e-18
3fg9_A156 Protein of universal stress protein USPA family; A 3e-18
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 6e-17
3fdx_A143 Putative filament protein / universal stress PROT; 5e-16
3mt0_A290 Uncharacterized protein PA1789; structural genomic 7e-15
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 6e-08
3olq_A319 Universal stress protein E; structural genomics, P 1e-14
3olq_A 319 Universal stress protein E; structural genomics, P 3e-11
3ab8_A 268 Putative uncharacterized protein TTHA0350; tandem- 6e-13
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 4e-08
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure
 Score =  134 bits (338), Expect = 7e-41
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 14/168 (8%)

Query: 2   ATAETQTMVVGIDDSEQSTY---------ALQWTLDHFFANSTVNPPFKLVIVHARPSPS 52
           + +E   ++V ++ S    Y         A +WTL+    ++T    FK++++H +    
Sbjct: 1   SGSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNT--SDFKILLLHVQVVDE 58

Query: 53  AVIGLAGP--GAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILC 110
                      + E    +    K     ++E     C    V      +  GD ++++C
Sbjct: 59  DGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGV-GCEAWIKTGDPKDVIC 117

Query: 111 EAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRPK 158
           + V++     LVVGS G G  ++  +G+VS +C  HA C VM +KR  
Sbjct: 118 QEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKRNA 165
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Length = 163 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Length = 137 Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} Length = 146 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} Length = 147 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Length = 162 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Length = 170 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Length = 309 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Length = 309 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Length = 150 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Length = 155 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Length = 156 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Length = 141 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Length = 143 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Length = 290 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Length = 290 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Length = 268 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Length = 268 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query161
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.97
3tnj_A150 Universal stress protein (USP); structural genomic 99.97
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.97
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.97
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.97
3fg9_A156 Protein of universal stress protein USPA family; A 99.96
3dlo_A155 Universal stress protein; unknown function, struct 99.96
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.96
2z08_A137 Universal stress protein family; uncharacterized c 99.96
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.96
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.95
3fdx_A143 Putative filament protein / universal stress PROT; 99.95
3olq_A 319 Universal stress protein E; structural genomics, P 99.94
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.93
3loq_A 294 Universal stress protein; structural genomics, PSI 99.93
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.92
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.91
3ab8_A 268 Putative uncharacterized protein TTHA0350; tandem- 99.91
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 99.91
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.91
3loq_A294 Universal stress protein; structural genomics, PSI 99.91
3olq_A319 Universal stress protein E; structural genomics, P 99.9
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.9
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.85
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 96.71
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 95.63
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 95.59
1wy5_A 317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 94.98
4b4k_A181 N5-carboxyaminoimidazole ribonucleotide mutase; is 94.24
3umv_A 506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 93.89
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 93.53
3oow_A166 Phosphoribosylaminoimidazole carboxylase,catalyic; 93.42
4grd_A173 N5-CAIR mutase, phosphoribosylaminoimidazole carbo 93.25
2ywx_A157 Phosphoribosylaminoimidazole carboxylase catalyti; 93.21
3trh_A169 Phosphoribosylaminoimidazole carboxylase carboxylt 93.09
2wq7_A 543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 92.65
3lp6_A174 Phosphoribosylaminoimidazole carboxylase catalyti; 92.64
3kuu_A174 Phosphoribosylaminoimidazole carboxylase catalyti 92.51
3g40_A 294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 92.49
1xmp_A170 PURE, phosphoribosylaminoimidazole carboxylase; pu 92.47
3ors_A163 N5-carboxyaminoimidazole ribonucleotide mutase; is 92.13
1o4v_A183 Phosphoribosylaminoimidazole mutase PURE; structur 91.97
3rg8_A159 Phosphoribosylaminoimidazole carboxylase, PURE PR; 91.39
1u11_A182 PURE (N5-carboxyaminoimidazole ribonucleotide MUT; 91.27
1iv0_A98 Hypothetical protein; rnaseh-like, YQGF, structura 91.11
1o97_C 264 Electron transferring flavoprotein beta-subunit; F 90.73
1zun_A 325 Sulfate adenylyltransferase subunit 2; beta barrel 90.3
3tvs_A 538 Cryptochrome-1; circadian clock light entrainment, 88.24
3ih5_A217 Electron transfer flavoprotein alpha-subunit; alph 87.17
2hma_A 376 Probable tRNA (5-methylaminomethyl-2-thiouridylat 86.83
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 85.55
1ni5_A 433 Putative cell cycle protein MESJ; structural genom 82.77
4f2d_A 500 L-arabinose isomerase; structural genomics, PSI-1, 82.37
1nu0_A138 Hypothetical protein YQGF; structural genomics, st 82.32
1qv9_A 283 F420-dependent methylenetetrahydromethanopterin de 82.18
1np7_A 489 DNA photolyase; protein with FAD cofactor; HET: DN 82.04
2h31_A425 Multifunctional protein ADE2; alpha-beta-alpha, li 81.9
1vhx_A150 Putative holliday junction resolvase; structural g 81.6
1efv_B255 Electron transfer flavoprotein; electron transport 81.52
3fy4_A 537 6-4 photolyase; DNA repair, clock cryptochrome; HE 81.45
1efp_B252 ETF, protein (electron transfer flavoprotein); ele 80.66
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
Probab=99.97  E-value=1.4e-30  Score=169.72  Aligned_cols=145  Identities=17%  Similarity=0.275  Sum_probs=121.0

Q ss_pred             CCCCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccCCCCCcCcccccchHHHHHHHHHH
Q 031355            2 ATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVV   81 (161)
Q Consensus         2 ~~~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   81 (161)
                      +.|++++||||+|+|+.+..++++|+.+|+.. +    ++++++||.+.........    ........+..++..++.+
T Consensus         1 s~~~~~~ILv~~D~s~~s~~al~~A~~la~~~-~----a~l~ll~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l   71 (146)
T 3s3t_A            1 SNARYTNILVPVDSSDAAQAAFTEAVNIAQRH-Q----ANLTALYVVDDSAYHTPAL----DPVLSELLDAEAAHAKDAM   71 (146)
T ss_dssp             -CCCCCEEEEECCSSHHHHHHHHHHHHHHHHH-T----CEEEEEEEEECCCCCCGGG----HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccceEEEEcCCCHHHHHHHHHHHHHHHhc-C----CEEEEEEEecCcccccccc----ccccHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999985 7    8999999988754321100    0012233455666777888


Q ss_pred             HHHHHHhhhcCCccEEEEEEcCChHhHHHH-HHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEEEc
Q 031355           82 EEAKEICSSKSVHDFVVEVVEGDARNILCE-AVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVK  155 (161)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~-~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlvv~  155 (161)
                      +++.+.+...|...+++.+..|++.+.|++ ++++.++||||||+++++.+.++++||++++++++++||||+||
T Consensus        72 ~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~  146 (146)
T 3s3t_A           72 RQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR  146 (146)
T ss_dssp             HHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred             HHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence            888888877776258899999999999999 99999999999999999999999999999999999999999997
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A* Back     alignment and structure
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Back     alignment and structure
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0 Back     alignment and structure
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Back     alignment and structure
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp} Back     alignment and structure
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Back     alignment and structure
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A* Back     alignment and structure
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Back     alignment and structure
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Back     alignment and structure
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Back     alignment and structure
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Back     alignment and structure
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0 Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A Back     alignment and structure
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A Back     alignment and structure
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A* Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} Back     alignment and structure
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 Back     alignment and structure
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Back     alignment and structure
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Back     alignment and structure
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 161
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 4e-22
d1mjha_160 c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archa 5e-17
d2z3va1135 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 { 2e-16
d1tq8a_147 c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobac 4e-16
d1jmva_140 c.26.2.4 (A:) Universal stress protein A, UspA {Ha 9e-11
d1q77a_138 c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex 3e-05
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 84.9 bits (209), Expect = 4e-22
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 14/159 (8%)

Query: 10  VVGIDDSE---------QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGP 60
           +V ++ S              A +WTL+    ++T    FK++++H +            
Sbjct: 5   MVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNT--SDFKILLLHVQVVDEDGFDDVDS 62

Query: 61  GAV--EVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHA 118
                E    +    K     ++E     C           +  GD ++++C+ V++   
Sbjct: 63  IYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEI-GVGCEAWIKTGDPKDVICQEVKRVRP 121

Query: 119 SILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKRP 157
             LVVGS G G  ++  +G+VS +C  HA C VM +KR 
Sbjct: 122 DFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKRN 160
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 160 Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Length = 135 Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 147 Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Length = 140 Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Length = 138 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query161
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 100.0
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.97
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.96
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.95
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.95
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.92
d3clsc1 262 Small, beta subunit of electron transfer flavoprot 96.3
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 96.13
d1efpb_246 Small, beta subunit of electron transfer flavoprot 95.93
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 95.58
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 94.94
d1p3y1_183 MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} 94.83
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 94.71
d1efvb_252 Small, beta subunit of electron transfer flavoprot 94.28
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 93.71
d1u11a_159 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 93.69
d1qcza_163 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 93.47
d1xmpa_155 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 93.07
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 92.61
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 91.16
d2a9pa1117 DNA-binding response regulator MicA, N-terminal do 90.91
d1g5qa_174 Epidermin modifying enzyme (peptidyl-cysteine deca 89.97
d1vbka1132 Hypothetical protein PH1313, C-terminal domain {Ar 87.89
d2pjua1 186 Propionate catabolism operon regulatory protein Pr 87.89
d1iv0a_98 Hypothetical protein, YqgF homologue {Thermus ther 87.05
d1xhfa1121 Aerobic respiration control protein ArcA, N-termin 85.7
d1xw8a_247 Hypothetical protein YbgL {Escherichia coli [TaxId 85.59
d1nu0a_138 Hypothetical protein YqgF (RuvX) {Escherichia coli 84.89
d1gsoa2105 Glycinamide ribonucleotide synthetase (GAR-syn), N 84.01
d1zh2a1119 Transcriptional regulatory protein KdpE, N-termina 83.47
d1s8na_ 190 Probable two-component system transcriptional regu 83.16
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 82.22
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.1e-32  Score=178.82  Aligned_cols=149  Identities=18%  Similarity=0.203  Sum_probs=118.9

Q ss_pred             CCceeEEEEecCChhHHHHHHHHHHHhhccCCCCCCcEEEEEEecCCCCcccccC--CC----CCcCc----ccccchHH
Q 031355            4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLA--GP----GAVEV----LPHVDSDF   73 (161)
Q Consensus         4 ~~~~~ilv~~d~s~~s~~al~~a~~la~~~~~~~~~a~l~~l~v~~~~~~~~~~~--~~----~~~~~----~~~~~~~~   73 (161)
                      +|++|||||+|+|+.+.+++++|..+|+.. +    ++|+++||+++........  ..    .....    .....+..
T Consensus         1 ~m~~~ILvavD~s~~s~~al~~a~~la~~~-~----a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (160)
T d1mjha_           1 VMYKKILYPTDFSETAEIALKHVKAFKTLK-A----EEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKL   75 (160)
T ss_dssp             CCCCEEEEECCSCHHHHHHHHHHHHTCCSS-C----CEEEEEEEEEGGGTC-----------------CHHHHHHHHHHH
T ss_pred             CCcCeEEEEECCCHHHHHHHHHHHHHHHhc-C----CEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHH
Confidence            589999999999999999999999999985 7    8999999986644321111  00    01111    11223344


Q ss_pred             HHHHHHHHHHHHHHhhhcCCccEEEEEEcCChHhHHHHHHHhcCCCEEEEecCCCCcceeeeccchHHHHhhcCCCcEEE
Q 031355           74 KKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMI  153 (161)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dliVlg~~~~~~~~~~~~gs~~~~ll~~~~~pvlv  153 (161)
                      .+.+++.++.+...+...|.. +++.+..|++.+.|++++++.++||||||+++++++.++|+||++++|+++++|||||
T Consensus        76 ~~~~~~~l~~~~~~~~~~gv~-~~~~~~~G~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS~a~~vl~~s~~pVlv  154 (160)
T d1mjha_          76 TEEAKNKMENIKKELEDVGFK-VKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLV  154 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCE-EEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCe-EEEEEEeccHHHHHhhhhhccccceEEeccCCCCcccccccCcHHHHHHhcCCCCEEE
Confidence            556667777777777776654 8899999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCC
Q 031355          154 VKRPK  158 (161)
Q Consensus       154 v~~~~  158 (161)
                      ||++.
T Consensus       155 V~~~~  159 (160)
T d1mjha_         155 VKRKN  159 (160)
T ss_dssp             ECCCC
T ss_pred             EcCCC
Confidence            99875
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Back     information, alignment and structure
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure