Citrus Sinensis ID: 031356

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELVCYFSLC
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccccEEEEEEEEEEEcccccEEEEEEEcccccccccEEEEccEEEEEEEEcccccEEEEEEEEEccEEEEEEccEEEEEEccccccEEEEEEccccccEEEEccccccEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEHHHHccccccccEEEEEEEEEEccccccEEEEEEcccccHHHcEEEcccccEEEEEccccccEEEEEEEEEccccEEEccEEEEEEEccccccEEEEEccccccccEEEccccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
MASPISKSLISVLIALFLISssfassdvpfIVAHKKASLKRLKSGAERISVSIDIhnqgtstaydvsltddswpqdkfdviSGNISQSWerldaggilshsfeldakvkgmfhgspalitfriptKAALQeaystpmlpldvlaekptenkLELVCYFSLC
Flexible Loop (DISEMBL)
MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVsidihnqgtstaYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELVCYFSLC
Low Complexity Region (SEG)
MASPISKslisvlialflisssfassDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELVCYFSLC
Disordered region (IsUnstruct)
********LISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELVCYFS**
Disordered Region (DISOPRED)
*****SK*LISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKA******STPMLPLDVLAEKPTENKLELVCYFSLC
Disordered Region (DISEMBL)
MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELVCYFSLC
Disordered Region (DISPRO)
*ASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELVCYFSLC
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELVCYFSLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
P23438	183	Translocon-associated pro	yes	no	0.677	0.595	0.309	4e-09
P43308	183	Translocon-associated pro	yes	no	0.658	0.579	0.290	4e-08
Q5E9E4	183	Translocon-associated pro	yes	no	0.534	0.469	0.313	7e-08
Q9CPW5	183	Translocon-associated pro	yes	no	0.534	0.469	0.325	7e-08
Q54VI6	184	Translocon-associated pro	yes	no	0.658	0.576	0.229	0.0003

>sp|P23438|SSRB_CANFA Translocon-associated protein subunit beta OS=Canis familiaris GN=SSR2 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 9   LISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSL 68
           L SVL+ALF +S +   + +       K+ L R       +++  +I+N G+S A DV L
Sbjct: 4   LASVLLALFAVSHAEEGARL----LASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVEL 59

Query: 69  TDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITF 121
           +DDS+P + F ++SG ++  W+R+     +SH+  L     G F+ + A +T+
Sbjct: 60  SDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTY 112

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.
Canis familiaris (taxid: 9615)

>sp|P43308|SSRB_HUMAN Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 4/110 (3%)

Query: 12  VLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDD 71
           V++ALF ++ +   + +       K+ L R       +++  +I+N G+S A DV L+DD
Sbjct: 7   VVLALFAVTQAEEGARL----LASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDD 62

Query: 72  SWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITF 121
           S+P + F ++SG ++  W+R+     +SH+  L     G F+ + A IT+
Sbjct: 63  SFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY 112

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Homo sapiens (taxid: 9606)

>sp|Q5E9E4|SSRB_BOVIN Translocon-associated protein subunit beta OS=Bos taurus GN=SSR2 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query: 36  KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
           K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 96  GILSHSFELDAKVKGMFHGSPALITF 121
             +SH+  L     G F+ + A +T+
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATVTY 112

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Bos taurus (taxid: 9913)

>sp|Q9CPW5|SSRB_MOUSE Translocon-associated protein subunit beta OS=Mus musculus GN=Ssr2 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query: 36  KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
           K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 96  GILSHSFELDAKVKGMFHGSPALITF 121
             +SH+  L     G F+ + A IT+
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATITY 112

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Mus musculus (taxid: 10090)

>sp|Q54VI6|SSRB_DICDI Translocon-associated protein subunit beta OS=Dictyostelium discoideum GN=ssr2 PE=2 SV=2

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 16/122 (13%)

Query: 7   KSLISVLIALFLISSSFASSDVPFIVAHKKASL---KRLKSG---AERISVSIDIHNQGT 60
           K++IS+ + LF          V F+     A L   K++  G    + + +   I+N G+
Sbjct: 4   KTVISLFLVLF----------VSFVYCENGAELLFHKKIVEGPVVGKELPIQFIIYNVGS 53

Query: 61  STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120
             AYD+S  D+ +   +F+ +SG+    WE L     +  +  +  K  G++  +  ++ 
Sbjct: 54  EPAYDISFIDNDFSNAEFEFVSGSSEGKWETLAPNSQVQTNLTVIPKKSGIYSLTSTVLN 113

Query: 121 FR 122
           +R
Sbjct: 114 YR 115

TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
255543619	208	translocon-associated protein, beta subu	0.881	0.682	0.809	5e-63
225451561	191	PREDICTED: translocon-associated protein	0.925	0.780	0.744	2e-62
359488447	189	PREDICTED: translocon-associated protein	0.925	0.788	0.744	2e-62
296082292	205	unnamed protein product [Vitis vinifera]	0.937	0.736	0.741	3e-62
351725945	194	uncharacterized protein LOC100500066 pre	0.950	0.788	0.732	2e-59
388500708	198	unknown [Lotus japonicus]	0.950	0.772	0.716	9e-59
297807427	195	translocon-associated protein beta famil	0.956	0.789	0.681	2e-58
449455914	190	PREDICTED: translocon-associated protein	0.937	0.794	0.709	8e-58
118484599	196	unknown [Populus trichocarpa]	0.795	0.653	0.812	2e-57
18417271	195	translocon-associated protein subunit be	0.956	0.789	0.662	2e-57

>gi|255543619|ref|XP_002512872.1| translocon-associated protein, beta subunit precursor, putative [Ricinus communis] gi|223547883|gb|EEF49375.1| translocon-associated protein, beta subunit precursor, putative [Ricinus communis]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/142 (80%), Positives = 131/142 (92%)

Query: 12  VLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDD 71
           +L+ALFLISS+ ASSDVPFIVAHKKA+L RLKSGAER+SVSIDI+NQG+STAYDVSL DD
Sbjct: 9   LLVALFLISSTSASSDVPFIVAHKKATLNRLKSGAERVSVSIDIYNQGSSTAYDVSLLDD 68

Query: 72  SWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQE 131
            WPQD FDVISGN SQSWERLD GGILSH+FEL+ KVKG+F+GSPA++TFRIPTKAALQE
Sbjct: 69  HWPQDIFDVISGNTSQSWERLDVGGILSHTFELEGKVKGLFYGSPAVVTFRIPTKAALQE 128

Query: 132 AYSTPMLPLDVLAEKPTENKLE 153
           A+STP+LPLDVLAE+P E K E
Sbjct: 129 AFSTPILPLDVLAERPPEKKFE 150

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451561|ref|XP_002274525.1| PREDICTED: translocon-associated protein subunit beta isoform 1 [Vitis vinifera]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/149 (74%), Positives = 136/149 (91%)

Query: 5   ISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAY 64
           ++K+LISV++AL L+SS+  SSDVPFIVAHKKASL RLKSGAER+SVSIDI+NQG++TAY
Sbjct: 1   MAKTLISVVVALILVSSTLGSSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSTTAY 60

Query: 65  DVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIP 124
           DVSLTDDSW QD F+++SGN S SWERLDAGG+LSH+FEL++KV+GMF+G+PA+ITFRIP
Sbjct: 61  DVSLTDDSWSQDVFNIVSGNTSTSWERLDAGGLLSHAFELESKVEGMFYGAPAVITFRIP 120

Query: 125 TKAALQEAYSTPMLPLDVLAEKPTENKLE 153
           T AALQEAYSTP+LPLD+LA +P E K E
Sbjct: 121 TTAALQEAYSTPILPLDILAVRPPEKKFE 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488447|ref|XP_002274610.2| PREDICTED: translocon-associated protein subunit beta isoform 2 [Vitis vinifera]

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/149 (74%), Positives = 136/149 (91%)

Query: 5   ISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAY 64
           ++K+LISV++AL L+SS+  SSDVPFIVAHKKASL RLKSGAER+SVSIDI+NQG++TAY
Sbjct: 1   MAKTLISVVVALILVSSTLGSSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSTTAY 60

Query: 65  DVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIP 124
           DVSLTDDSW QD F+++SGN S SWERLDAGG+LSH+FEL++KV+GMF+G+PA+ITFRIP
Sbjct: 61  DVSLTDDSWSQDVFNIVSGNTSTSWERLDAGGLLSHAFELESKVEGMFYGAPAVITFRIP 120

Query: 125 TKAALQEAYSTPMLPLDVLAEKPTENKLE 153
           T AALQEAYSTP+LPLD+LA +P E K E
Sbjct: 121 TTAALQEAYSTPILPLDILAVRPPEKKFE 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082292|emb|CBI21297.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 137/151 (90%)

Query: 5   ISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAY 64
           ++K+LISV++AL L+SS+  SSDVPFIVAHKKASL RLKSGAER+SVSIDI+NQG++TAY
Sbjct: 1   MAKTLISVVVALILVSSTLGSSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSTTAY 60

Query: 65  DVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIP 124
           DVSLTDDSW QD F+++SGN S SWERLDAGG+LSH+FEL++KV+GMF+G+PA+ITFRIP
Sbjct: 61  DVSLTDDSWSQDVFNIVSGNTSTSWERLDAGGLLSHAFELESKVEGMFYGAPAVITFRIP 120

Query: 125 TKAALQEAYSTPMLPLDVLAEKPTENKLELV 155
           T AALQEAYSTP+LPLD+LA +P E K E V
Sbjct: 121 TTAALQEAYSTPILPLDILAVRPPEKKFEWV 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725945|ref|NP_001236342.1| uncharacterized protein LOC100500066 precursor [Glycine max] gi|255628939|gb|ACU14814.1| unknown [Glycine max]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/153 (73%), Positives = 132/153 (86%)

Query: 1   MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGT 60
           MA PI+K+LI+  +   L+  S ASSDVPFIVAHKKASL RLKSGAER+SV+IDI NQGT
Sbjct: 1   MADPIAKALIAFALLTSLLLCSHASSDVPFIVAHKKASLNRLKSGAERVSVTIDIFNQGT 60

Query: 61  STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120
           STAYDVSL+DDSWP D FDVISG+ S+SWERLDAGGILSH+FEL+AK KG+F G PA+I 
Sbjct: 61  STAYDVSLSDDSWPSDAFDVISGSTSKSWERLDAGGILSHTFELEAKSKGVFAGEPAVIK 120

Query: 121 FRIPTKAALQEAYSTPMLPLDVLAEKPTENKLE 153
           FR+PTK+ALQEAYSTP+LPLDVL+++P E K E
Sbjct: 121 FRVPTKSALQEAYSTPILPLDVLSDRPPEKKFE 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500708|gb|AFK38420.1| unknown [Lotus japonicus]

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 111/155 (71%), Positives = 135/155 (87%), Gaps = 2/155 (1%)

Query: 1   MASPISKSLI--SVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQ 58
           MA PISK+LI  S++ +L L S + +SSDVPFIVAHKKASL RLKSGAER+SVSIDI+NQ
Sbjct: 3   MADPISKALILLSIVASLLLCSHASSSSDVPFIVAHKKASLNRLKSGAERVSVSIDIYNQ 62

Query: 59  GTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPAL 118
           G+STAYD+SL DD+WP D F +ISG+ S+SWERLDAGGILSH+FEL+AK KG+F G PA+
Sbjct: 63  GSSTAYDISLADDTWPSDLFSIISGSTSKSWERLDAGGILSHTFELEAKTKGVFSGQPAV 122

Query: 119 ITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKLE 153
           I FRIPTK+ALQEA+STP+LPLD+LA++P E KLE
Sbjct: 123 IKFRIPTKSALQEAFSTPILPLDILADRPPEKKLE 157

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807427|ref|XP_002871597.1| translocon-associated protein beta family protein [Arabidopsis lyrata subsp. lyrata] gi|297317434|gb|EFH47856.1| translocon-associated protein beta family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/154 (68%), Positives = 134/154 (87%)

Query: 1   MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGT 60
           MA  +SK LIS +    L+S+SFA+S+VPF+V HKKA+L RLKSGAER+SVS DI+NQG+
Sbjct: 1   MAIALSKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120
           STAYDV+LTD+SW +  F+V++GN S+SWERLDAGGILSHSFEL+AKVKG+F+G+PA++T
Sbjct: 61  STAYDVTLTDNSWDKATFEVVNGNTSKSWERLDAGGILSHSFELEAKVKGVFYGAPAVVT 120

Query: 121 FRIPTKAALQEAYSTPMLPLDVLAEKPTENKLEL 154
           FRIPTK ALQEAYSTP+LPLD+LA+KP    L++
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKILDV 154

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455914|ref|XP_004145695.1| PREDICTED: translocon-associated protein subunit beta-like isoform 1 [Cucumis sativus] gi|449455916|ref|XP_004145696.1| PREDICTED: translocon-associated protein subunit beta-like isoform 2 [Cucumis sativus] gi|449492917|ref|XP_004159140.1| PREDICTED: translocon-associated protein subunit beta-like isoform 1 [Cucumis sativus] gi|449492920|ref|XP_004159141.1| PREDICTED: translocon-associated protein subunit beta-like isoform 2 [Cucumis sativus]

 Score =  228 bits (580), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 110/155 (70%), Positives = 129/155 (83%), Gaps = 4/155 (2%)

Query: 1   MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGT 60
           MA P    +I +L A   +SS+ A+SDVPFIVAHKKASL RLKSGAER+SVSIDI+NQG+
Sbjct: 1   MAPP----MIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGS 56

Query: 61  STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120
           STAYDVSL D SWP D FD++SG  S SWERLDAGG +SHSFEL+AK +GMFHGSPA+IT
Sbjct: 57  STAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSRGMFHGSPAVIT 116

Query: 121 FRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELV 155
           FR+PTK+ALQEA STP+LPLDVLA++P E K E V
Sbjct: 117 FRVPTKSALQEALSTPILPLDVLADRPPEKKFEWV 151

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484599|gb|ABK94173.1| unknown [Populus trichocarpa]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/128 (81%), Positives = 119/128 (92%)

Query: 27  DVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNIS 86
           DVPFIVAHKKA+ + LKSGAER+SVSIDI+NQG+STAYD++LTDD WP+D FDV+SGN S
Sbjct: 28  DVPFIVAHKKATPRGLKSGAERVSVSIDIYNQGSSTAYDITLTDDHWPKDIFDVVSGNTS 87

Query: 87  QSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEK 146
           QSW+RLDAGG+LSH+FEL+ KVKGMFHGSPA+ITFRIPTKAALQEAYSTP+LPLDVLAEK
Sbjct: 88  QSWDRLDAGGLLSHAFELEGKVKGMFHGSPAVITFRIPTKAALQEAYSTPILPLDVLAEK 147

Query: 147 PTENKLEL 154
           P   KLEL
Sbjct: 148 PPVQKLEL 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417271|ref|NP_568293.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|186522719|ref|NP_001119221.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|186522723|ref|NP_001119222.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|186522727|ref|NP_001119223.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|14517446|gb|AAK62613.1| AT5g14030/MUA22_2 [Arabidopsis thaliana] gi|21553748|gb|AAM62841.1| unknown [Arabidopsis thaliana] gi|22136544|gb|AAM91058.1| AT5g14030/MUA22_2 [Arabidopsis thaliana] gi|332004593|gb|AED91976.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|332004594|gb|AED91977.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|332004595|gb|AED91978.1| translocon-associated protein subunit beta [Arabidopsis thaliana] gi|332004596|gb|AED91979.1| translocon-associated protein subunit beta [Arabidopsis thaliana]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/154 (66%), Positives = 133/154 (86%)

Query: 1   MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGT 60
           MA  ++K LIS +    L+S+SFA+S+VPF+V HKKA+L RLKSGAER+SVS DI+NQG+
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120
           S+AYDV+LTD+SW +  F+V++GN S+SWERLDAGGILSHS EL+AKVKG+F+G+PA++T
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRIPTKAALQEAYSTPMLPLDVLAEKPTENKLEL 154
           FRIPTK ALQEAYSTP+LPLD+LA+KP    L++
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDV 154

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2174678	195	AT5G14030 "AT5G14030" [Arabido	0.956	0.789	0.603	7.7e-48
UNIPROTKB|Q5ZLW9	183	SSR2 "Uncharacterized protein"	0.534	0.469	0.325	1.8e-09
UNIPROTKB|E9PJ35	133	SSR2 "Translocon-associated pr	0.534	0.646	0.325	2.2e-09
UNIPROTKB|E9PQI4	147	SSR2 "Translocon-associated pr	0.534	0.585	0.325	2.2e-09
UNIPROTKB|P43308	183	SSR2 "Translocon-associated pr	0.534	0.469	0.325	2.2e-09
UNIPROTKB|F1RLP7	203	SSR2 "Uncharacterized protein"	0.534	0.423	0.325	2.2e-09
MGI|MGI:1913506	183	Ssr2 "signal sequence receptor	0.534	0.469	0.325	2.2e-09
RGD|1308365	183	Ssr2 "signal sequence receptor	0.534	0.469	0.325	2.2e-09
UNIPROTKB|F1MW25	212	SSR2 "Translocon-associated pr	0.534	0.405	0.313	2.9e-09
UNIPROTKB|Q5E9E4	183	SSR2 "Translocon-associated pr	0.534	0.469	0.313	2.9e-09

TAIR|locus:2174678 AT5G14030 "AT5G14030" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 93/154 (60%), Positives = 120/154 (77%)

Query:     1 MASPISKXXXXXXXXXXXXXXXXXXXDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGT 60
             MA  ++K                   +VPF+V HKKA+L RLKSGAER+SVS DI+NQG+
Sbjct:     1 MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query:    61 STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120
             S+AYDV+LTD+SW +  F+V++GN S+SWERLDAGGILSHS EL+AKVKG+F+G+PA++T
Sbjct:    61 SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query:   121 FRIPTKAALQEAYSTPMLPLDVLAEKPTENKLEL 154
             FRIPTK ALQEAYSTP+LPLD+LA+KP    L++
Sbjct:   121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDV 154

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

UNIPROTKB|Q5ZLW9 SSR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 28/86 (32%), Positives = 50/86 (58%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R     + +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGKDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATITY 112

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E9PJ35 SSR2 "Translocon-associated protein subunit beta" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATITY 112

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E9PQI4 SSR2 "Translocon-associated protein subunit beta" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATITY 112

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P43308 SSR2 "Translocon-associated protein subunit beta" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATITY 112

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006613 "cotranslational protein targeting to membrane" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1RLP7 SSR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    47 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 106

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:   107 SNVSHTVVLRPLKAGYFNFTSATITY 132

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

MGI|MGI:1913506 Ssr2 "signal sequence receptor, beta" [Mus musculus (taxid:10090)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATITY 112

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1308365 Ssr2 "signal sequence receptor, beta" [Rattus norvegicus (taxid:10116)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/86 (32%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A IT+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATITY 112

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MW25 SSR2 "Translocon-associated protein subunit beta" [Bos taurus (taxid:9913)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A +T+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATVTY 112

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|Q5E9E4 SSR2 "Translocon-associated protein subunit beta" [Bos taurus (taxid:9913)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 27/86 (31%), Positives = 49/86 (56%)

Query:    36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAG 95
             K+ L R       +++  +I+N G+S A DV L+DDS+P + F ++SG ++  W+R+   
Sbjct:    27 KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query:    96 GILSHSFELDAKVKGMFHGSPALITF 121
               +SH+  L     G F+ + A +T+
Sbjct:    87 SNVSHTVVLRPLKAGYFNFTSATVTY 112

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037925001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (205 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037864001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (69 aa)				•		•			0.837
	GSVIVG00036059001	SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_8, whole genome shotgu [...] (253 aa)				•		•			0.828
	GSVIVG00018216001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_17, whole genome shot [...] (108 aa)				•		•			0.808
	GSVIVG00024508001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (107 aa)				•		•			0.808
	GSVIVG00027847001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (476 aa)				•		•			0.800
	GSVIVG00025893001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (211 aa)						•			0.800
	GSVIVG00016972001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (489 aa)						•			0.800
	GSVIVG00010542001	SubName- Full=Chromosome undetermined scaffold_267, whole genome shotgun sequence; (218 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
pfam05753	181	pfam05753, TRAP_beta, Translocon-associated protei	6e-51

>gnl|CDD|218732 pfam05753, TRAP_beta, Translocon-associated protein beta (TRAPB)

 Score =  160 bits (407), Expect = 6e-51
 Identities = 56/148 (37%), Positives = 87/148 (58%), Gaps = 1/148 (0%)

Query: 10  ISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLT 69
           +++++   L S+S A  D P  +   K+ L R       ++V+  I+N G+S AYDVSL 
Sbjct: 1   LALVVLALLASASLAQEDSPARLLVSKSILNRYLVEGRDLTVTYTIYNVGSSPAYDVSLV 60

Query: 70  DDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPT-KAA 128
           D+S+P+D F+V+SG++S SWERL  G  +SH+F +  K  G F+ +PA +T+R     A 
Sbjct: 61  DNSFPEDAFEVVSGSLSASWERLAPGENVSHTFVVRPKKSGYFNFTPAEVTYRASEDGAE 120

Query: 129 LQEAYSTPMLPLDVLAEKPTENKLELVC 156
           LQ AYS+P     +LAE+  + K     
Sbjct: 121 LQVAYSSPPGEGGILAERDYDKKFSPHL 148

This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PF05753	181	TRAP_beta: Translocon-associated protein beta (TRA	100.0
KOG3317	188	consensus Translocon-associated complex TRAP, beta	100.0
PF07705	101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	98.05
PF01345	76	DUF11: Domain of unknown function DUF11; InterPro:	97.9
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	97.7
TIGR01451	53	B_ant_repeat conserved repeat domain. This model r	97.61
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	97.04
PF13584	484	BatD: Oxygen tolerance	96.51
TIGR02588	122	conserved hypothetical protein TIGR02588. The func	96.05
COG1721	416	Uncharacterized conserved protein (some members co	95.79
COG1361	500	S-layer domain [Cell envelope biogenesis, outer me	94.85
PF07919	554	Gryzun: Gryzun, putative trafficking through Golgi	94.77
PF00927	107	Transglut_C: Transglutaminase family, C-terminal i	93.89
COG1470	513	Predicted membrane protein [Function unknown]	93.26
PF12690	82	BsuPI: Intracellular proteinase inhibitor; InterPr	92.74
PF14874	102	PapD-like: Flagellar-associated PapD-like	92.49
TIGR03079	399	CH4_NH3mon_ox_B methane monooxygenase/ammonia mono	92.45
PF13584	484	BatD: Oxygen tolerance	90.87
COG1361	500	S-layer domain [Cell envelope biogenesis, outer me	90.49
PF12584	147	TRAPPC10: Trafficking protein particle complex sub	89.46
PF09624	149	DUF2393: Protein of unknown function (DUF2393); In	86.38
PF03896	285	TRAP_alpha: Translocon-associated protein (TRAP),	85.74
PF09478	80	CBM49: Carbohydrate binding domain CBM49; InterPro	85.16
PRK10378	375	inactive ferrous ion transporter periplasmic prote	84.96
PF02102	359	Peptidase_M35: Deuterolysin metalloprotease (M35)	84.28
PF05506	89	DUF756: Domain of unknown function (DUF756); Inter	83.34
PRK02710	119	plastocyanin; Provisional	83.31
PF04744	381	Monooxygenase_B: Monooxygenase subunit B protein;	82.09
COG1572	606	Uncharacterized conserved protein [Function unknow	80.84
KOG2291	602	consensus Oligosaccharyltransferase, alpha subunit	80.75

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins

Probab=100.00  E-value=2.8e-52  Score=336.40  Aligned_cols=151  Identities=36%  Similarity=0.567  Sum_probs=142.3

Q ss_pred             HHHHHHHHHhhhcccCCCCceEEEEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEE
Q 031356           10 ISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSW   89 (161)
Q Consensus        10 ~~~llal~~v~~~~~~~~~a~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~   89 (161)
                      ++++++++++++++++++.|+|+++|+++++++++| +|++|+|+|||+|+++|+||+|+||+||+++|++++|+++++|
T Consensus         2 ~~~~~~~l~~~~~~~~~~~a~llv~K~il~~~~v~g-~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~   80 (181)
T PF05753_consen    2 ALFLLALLALASVAQEDSPARLLVSKQILNKYLVEG-EDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASW   80 (181)
T ss_pred             hhhhHHHHHHHHhccCCCCcEEEEEEeeccccccCC-cEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEE
Confidence            455666666666788899999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             EeecCCCceEEEEEEEEceeeeEEeecEEEEEEcCCC-cceeEEeecCCCceeeeecCCcccee-----eeEEEEecC
Q 031356           90 ERLDAGGILSHSFELDAKVKGMFHGSPALITFRIPTK-AALQEAYSTPMLPLDVLAEKPTENKL-----ELVCYFSLC  161 (161)
Q Consensus        90 ~ri~pg~nvsH~vvv~p~~~G~f~~t~A~VtY~~~~~-~~~q~a~Ss~~g~~~I~~~~~~~rk~-----dW~~F~~l~  161 (161)
                      +||+||+|++|+|+|+|++.|+|++++|+|+|+++++ .++|+++||+||++.|+++|+|||||     ||++|++|+
T Consensus        81 ~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~~~~~~~~~~a~Ss~~~~~~I~~~~~~~k~f~~~~~~w~~f~~~~  158 (181)
T PF05753_consen   81 ERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRDSEGAKELQVAYSSPPGEGDILAERDYDKKFSSHVMDWGAFAIMT  158 (181)
T ss_pred             EEECCCCeEEEEEEEeeeeeEEEEccCEEEEEECCCCCceeEEEEecCCCcceEEeccccchhhhhhHHHHHhHHHHH
Confidence            9999999999999999999999999999999999999 67999999999999999999999997     999998874

The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane

>KOG3317 consensus Translocon-associated complex TRAP, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.7e-50  Score=319.66  Aligned_cols=137  Identities=37%  Similarity=0.658  Sum_probs=131.4

Q ss_pred             ccCCCCceEEEEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEE
Q 031356           23 FASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSF  102 (161)
Q Consensus        23 ~~~~~~a~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~v  102 (161)
                      +++...++||.+|+.+|+|.|++ +|++++|+|||+|+++|+||+|+|+|||++.||||+|+++++|||||||+|++|++
T Consensus        19 ~~at~~a~ll~kk~~lnry~v~~-rd~~leY~IyNvGsspAldVtLsD~Sfpt~~FeIvkG~~~~swerIpags~vsHsi   97 (188)
T KOG3317|consen   19 SFATSEAMLLAKKATLNRYAVEA-RDVSLEYDIYNVGSSPALDVTLSDNSFPTKTFEIVKGNLSVSWERIPAGSNVSHSI   97 (188)
T ss_pred             hhcccceEEEeeccchhhccccc-eeeEEEEeeEEcCCCcceeEEecCCCCCccceeeeccccccceeecCCCCceEEEE
Confidence            56666699999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEceeeeEEeecEEEEEEcCCCcceeEEeecCCCceeeeecCCcccee-----eeEEEEec
Q 031356          103 ELDAKVKGMFHGSPALITFRIPTKAALQEAYSTPMLPLDVLAEKPTENKL-----ELVCYFSL  160 (161)
Q Consensus       103 vv~p~~~G~f~~t~A~VtY~~~~~~~~q~a~Ss~~g~~~I~~~~~~~rk~-----dW~~F~~l  160 (161)
                      +|||++.|.||+++|+|||+.+|+...|++++|+||+|+|+++|||||+|     +|..|+++
T Consensus        98 vl~prv~g~f~~t~atVty~~~e~g~~~~~~ts~~~~gyila~re~~rr~~~~~l~flgfgvi  160 (188)
T KOG3317|consen   98 VLRPRVKGVFNGTPATVTYRIPEKGALQEAYTSPPGPGYILAQREPDRRFDPRLLAFLGFGVI  160 (188)
T ss_pred             EEeecccceeccCceEEEEEcCCCCceeEEeecCCCCcceeeecCcccccChhHHHHHhhhhh
Confidence            99999999999999999999999988899999999999999999999996     89988765

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins

Probab=98.05  E-value=8.8e-05  Score=51.70  Aligned_cols=77  Identities=19%  Similarity=0.351  Sum_probs=55.2

Q ss_pred             ceEEEEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCce--eeEEEeecCCCceEEEEEEEE
Q 031356           29 PFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNI--SQSWERLDAGGILSHSFELDA  106 (161)
Q Consensus        29 a~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~--s~~~~ri~pg~nvsH~vvv~p  106 (161)
                      |.|.+.-......+..| ++++|+++|.|.|..+|.++.+.        | .+.|..  +.....|+||+..+..+.+.+
T Consensus         2 pDL~v~~~~~~~~~~~g-~~~~i~~~V~N~G~~~~~~~~v~--------~-~~~~~~~~~~~i~~L~~g~~~~v~~~~~~   71 (101)
T PF07705_consen    2 PDLTVSITVSPSNVVPG-EPVTITVTVKNNGTADAENVTVR--------L-YLDGNSVSTVTIPSLAPGESETVTFTWTP   71 (101)
T ss_dssp             --EEE-EEEC-SEEETT-SEEEEEEEEEE-SSS-BEEEEEE--------E-EETTEEEEEEEESEB-TTEEEEEEEEEE-
T ss_pred             CCEEEEEeeCCCcccCC-CEEEEEEEEEECCCCCCCCEEEE--------E-EECCceeccEEECCcCCCcEEEEEEEEEe
Confidence            55677566667788888 99999999999999999888877        2 344444  445579999999999999999


Q ss_pred             ceeeeEEee
Q 031356          107 KVKGMFHGS  115 (161)
Q Consensus       107 ~~~G~f~~t  115 (161)
                      ...|.|.+.
T Consensus        72 ~~~G~~~i~   80 (101)
T PF07705_consen   72 PSPGSYTIR   80 (101)
T ss_dssp             SS-CEEEEE
T ss_pred             CCCCeEEEE
Confidence            999998864

; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.

>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes

Probab=97.90  E-value=6.7e-05  Score=51.56  Aligned_cols=56  Identities=21%  Similarity=0.399  Sum_probs=48.4

Q ss_pred             CCCceEEEEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCc
Q 031356           26 SDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGN   84 (161)
Q Consensus        26 ~~~a~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~   84 (161)
                      ...+.+.+.|......+..| +.++.++++.|.|+.+|.+|.|.|. + +..+++++|+
T Consensus        21 ~~~~~~~~~k~~~~~~~~~G-d~v~ytitvtN~G~~~a~nv~v~D~-l-p~g~~~v~~S   76 (76)
T PF01345_consen   21 VAIPDLSITKTVNPSTANPG-DTVTYTITVTNTGPAPATNVVVTDT-L-PAGLTFVSGS   76 (76)
T ss_pred             cCCCCEEEEEecCCCcccCC-CEEEEEEEEEECCCCeeEeEEEEEc-C-CCCCEEeCCC
Confidence            34467999999999999999 9999999999999999999999994 5 4557788774

Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=97.70  E-value=0.00026  Score=49.01  Aligned_cols=72  Identities=21%  Similarity=0.370  Sum_probs=45.4

Q ss_pred             cCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEEce---eeeEEeecEEEE
Q 031356           44 SGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKV---KGMFHGSPALIT  120 (161)
Q Consensus        44 ~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p~~---~G~f~~t~A~Vt  120 (161)
                      .| +.++++.++-|.|+.++.++++.=+.  ++.|. +. .-..+...|+||++++..+.|+|-.   .|.|.++. .++
T Consensus         3 ~G-~~~~~~~tv~N~g~~~~~~v~~~l~~--P~GW~-~~-~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~-~a~   76 (78)
T PF10633_consen    3 PG-ETVTVTLTVTNTGTAPLTNVSLSLSL--PEGWT-VS-ASPASVPSLPPGESVTVTFTVTVPADAAPGTYTVTV-TAR   76 (78)
T ss_dssp             TT-EEEEEEEEEE--SSS-BSS-EEEEE----TTSE-----EEEEE--B-TTSEEEEEEEEEE-TT--SEEEEEEE-EEE
T ss_pred             CC-CEEEEEEEEEECCCCceeeEEEEEeC--CCCcc-cc-CCccccccCCCCCEEEEEEEEECCCCCCCceEEEEE-EEE
Confidence            46 89999999999999999999988532  45666 22 2234555999999999999999543   58888753 344


Q ss_pred             E
Q 031356          121 F  121 (161)
Q Consensus       121 Y  121 (161)
                      |
T Consensus        77 y   77 (78)
T PF10633_consen   77 Y   77 (78)
T ss_dssp             -
T ss_pred             e
Confidence            4

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>TIGR01451 B_ant_repeat conserved repeat domain

Probab=97.61  E-value=0.00025  Score=46.62  Aligned_cols=50  Identities=24%  Similarity=0.359  Sum_probs=41.3

Q ss_pred             eeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceee
Q 031356           35 KKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQ   87 (161)
Q Consensus        35 K~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~   87 (161)
                      |......+..| +.++.++++-|.|..+|.+|.|.|. .| +.+++++|+.+.
T Consensus         1 Kt~d~~~~~~G-d~v~Yti~v~N~g~~~a~~v~v~D~-lP-~g~~~v~~S~~~   50 (53)
T TIGR01451         1 KTVDKTVATIG-DTITYTITVTNNGNVPATNVVVTDI-LP-SGTTFVSNSVTV   50 (53)
T ss_pred             CccCccccCCC-CEEEEEEEEEECCCCceEeEEEEEc-CC-CCCEEEeCcEEE
Confidence            45566677888 9999999999999999999999994 55 457888888653

This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=97.04  E-value=0.0025  Score=46.15  Aligned_cols=62  Identities=13%  Similarity=0.135  Sum_probs=35.4

Q ss_pred             eeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEEceeeeEEe
Q 031356           35 KKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHG  114 (161)
Q Consensus        35 K~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~  114 (161)
                      -.+..+.+-+. .--.|++++-|.|+.+ .++.+.+              +. ....|+||++.+.++  .|.+.|.|.|
T Consensus        30 ~~f~P~~i~v~-~G~~v~l~~~N~~~~~-h~~~i~~--------------~~-~~~~l~~g~~~~~~f--~~~~~G~y~~   90 (104)
T PF13473_consen   30 FGFSPSTITVK-AGQPVTLTFTNNDSRP-HEFVIPD--------------LG-ISKVLPPGETATVTF--TPLKPGEYEF   90 (104)
T ss_dssp             EEEES-EEEEE-TTCEEEEEEEE-SSS--EEEEEGG--------------GT-EEEEE-TT-EEEEEE--EE-S-EEEEE
T ss_pred             CeEecCEEEEc-CCCeEEEEEEECCCCc-EEEEECC--------------Cc-eEEEECCCCEEEEEE--cCCCCEEEEE
Confidence            34444444333 2234456678999886 7777776              11 227999999986665  7999999987


Q ss_pred             e
Q 031356          115 S  115 (161)
Q Consensus       115 t  115 (161)
                      .
T Consensus        91 ~   91 (104)
T PF13473_consen   91 Y   91 (104)
T ss_dssp             B
T ss_pred             E
Confidence            4

>PF13584 BatD: Oxygen tolerance

Probab=96.51  E-value=0.036  Score=49.84  Aligned_cols=83  Identities=22%  Similarity=0.343  Sum_probs=56.4

Q ss_pred             ceEEEEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCC-CCceEecCceeeEEEeecCC--CceEEEEEEE
Q 031356           29 PFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQ-DKFDVISGNISQSWERLDAG--GILSHSFELD  105 (161)
Q Consensus        29 a~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~-~~F~iv~G~~s~~~~ri~pg--~nvsH~vvv~  105 (161)
                      +.+-++  +..+.+..| +.+++++++.+-|+    +     ..+|. +.|++.+.+.+.+..-+.-.  ...+..|++.
T Consensus        13 ~~v~a~--vd~~~v~~g-e~~~l~i~~~~~~~----~-----~~~p~l~~f~v~~~~~s~~~~~inG~~~~~~~~~~~l~   80 (484)
T PF13584_consen   13 VSVTAS--VDRNEVGLG-ETFQLTITINGDGD----D-----PDLPELDGFEVLGPSQSSSTSIINGKVSSSTTYTYTLQ   80 (484)
T ss_pred             eEEEEE--ECCcEEcCC-CEEEEEEEEecCcc----c-----CCCCCCCCeEEcceEEEEEEEEecCceEEEEEEEEEEE
Confidence            444443  566788888 89999999876331    2     33444 88998444445544333322  2356788899


Q ss_pred             EceeeeEEeecEEEEEEc
Q 031356          106 AKVKGMFHGSPALITFRI  123 (161)
Q Consensus       106 p~~~G~f~~t~A~VtY~~  123 (161)
                      |++.|.|.++++.|++..
T Consensus        81 p~~~G~~~IP~~~v~v~G   98 (484)
T PF13584_consen   81 PKKTGTFTIPPFTVEVDG   98 (484)
T ss_pred             ecccceEEEceEEEEECC
Confidence            999999999999997744

>TIGR02588 conserved hypothetical protein TIGR02588

Probab=96.05  E-value=0.2  Score=38.81  Aligned_cols=91  Identities=18%  Similarity=0.262  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhhhcccCCCCceEEEEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeE
Q 031356            9 LISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQS   88 (161)
Q Consensus         9 ~~~~llal~~v~~~~~~~~~a~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~   88 (161)
                      +++++++++.--..++....|.|.+...= -.+-+.|  ..-|.++|.|-|+.+|-.|++.-. ...+.=  +--.-...
T Consensus        14 ill~viglv~y~~l~~~~~pp~l~v~~~~-~~r~~~g--qyyVpF~V~N~gg~TAasV~V~ge-L~~~~~--v~E~~e~t   87 (122)
T TIGR02588        14 ILAAMFGLVAYDWLRYSNKAAVLEVAPAE-VERMQTG--QYYVPFAIHNLGGTTAAAVNIRGE-LRQAGA--VVENAEVT   87 (122)
T ss_pred             HHHHHHHHHHHHhhccCCCCCeEEEeehh-eeEEeCC--EEEEEEEEEeCCCcEEEEEEEEEE-EccCCc--eeEEeeEE
Confidence            34444444444446778888988777632 2444444  799999999999999999998752 111000  11133566


Q ss_pred             EEeecCCCceEEEEEEE
Q 031356           89 WERLDAGGILSHSFELD  105 (161)
Q Consensus        89 ~~ri~pg~nvsH~vvv~  105 (161)
                      +|=||-|+...-.++-+
T Consensus        88 iDfl~g~e~~~G~~IF~  104 (122)
T TIGR02588        88 IDYLASGSKENGTLIFR  104 (122)
T ss_pred             EEEcCCCCeEeEEEEEc
Confidence            77777766555444443

The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.

>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]

Probab=95.79  E-value=0.072  Score=47.56  Aligned_cols=93  Identities=19%  Similarity=0.302  Sum_probs=69.4

Q ss_pred             CCCCceEEEEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEE
Q 031356           25 SSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFEL  104 (161)
Q Consensus        25 ~~~~a~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv  104 (161)
                      ....+.+-+.+.+....+.+| +++++++.+-|   ...-.+.+.| .+|++.+ .+.|..... -.+.+|+.  ..+.+
T Consensus        47 ~~~~~~~~v~r~~~~~~~~~g-~~~~v~~~v~~---r~~~~~~~~~-~~~~~~~-~~~~~~~~~-~~~~~~~~--~~~~~  117 (416)
T COG1721          47 ARSLPGARVERSLEKRRLFAG-EEVEVTLRVRN---RGRPRLLLVD-DIPPSFL-GVEGTEEVS-LRLGPGER--VAYKV  117 (416)
T ss_pred             hhcccceEeeccccccccccC-ccceeEEEEEe---cCccceEeee-ccCCccc-ccccCccee-eccCCCce--EEEEE
Confidence            344567888888876668889 99999999999   3344566676 3666644 555554433 35666666  99999


Q ss_pred             EEceeeeEEeecEEEEEEcCCC
Q 031356          105 DAKVKGMFHGSPALITFRIPTK  126 (161)
Q Consensus       105 ~p~~~G~f~~t~A~VtY~~~~~  126 (161)
                      .|.+-|.|.+.+..+...+.-+
T Consensus       118 ~~~~rG~~~~~~v~~~~~~~~g  139 (416)
T COG1721         118 TPLRRGEYRLPPVRVRAEDPFG  139 (416)
T ss_pred             ecccCCcccccceEEEccCccc
Confidence            9999999999999999987765

>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]

Probab=94.85  E-value=0.23  Score=45.08  Aligned_cols=84  Identities=23%  Similarity=0.297  Sum_probs=68.3

Q ss_pred             ccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCce-eeEEEeecCCCceEEEEEEEEc---eeeeEEe
Q 031356           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNI-SQSWERLDAGGILSHSFELDAK---VKGMFHG  114 (161)
Q Consensus        39 ~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~-s~~~~ri~pg~nvsH~vvv~p~---~~G~f~~  114 (161)
                      ...+..| +..+++++|.|.|+.+|.++.|...+ |...+.-+.+.. .....-|.||+++.-++.+...   ..|.|..
T Consensus       160 ~~~i~~G-~~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~~~~a~~g~y~i  237 (500)
T COG1361         160 PEAIIPG-ETNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYAGSNAEPGTYTI  237 (500)
T ss_pred             ccccCCC-CccEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEeecCCCCccEEE
Confidence            4455667 67799999999999999999999854 666666677776 6889999999999999999987   5787776


Q ss_pred             ecEEEEEEcCC
Q 031356          115 SPALITFRIPT  125 (161)
Q Consensus       115 t~A~VtY~~~~  125 (161)
                      . ..++|++.+
T Consensus       238 ~-i~i~~~~~~  247 (500)
T COG1361         238 N-LEITYKDEE  247 (500)
T ss_pred             E-EEEEEecCC
Confidence            4 578888843

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function

Probab=94.77  E-value=0.33  Score=43.97  Aligned_cols=86  Identities=21%  Similarity=0.213  Sum_probs=66.8

Q ss_pred             CCCceEEEEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEE
Q 031356           26 SDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELD  105 (161)
Q Consensus        26 ~~~a~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~  105 (161)
                      ...++++++-   ..+..+| ..++++|+|.|- +.-..+.++.=+  ++++| +.+|.-..++- |.|++.-+-.|.+.
T Consensus       468 ~~~~~v~~~~---p~~~~~~-~~~~l~~~I~N~-T~~~~~~~~~me--~s~~F-~fsG~k~~~~~-llP~s~~~~~y~l~  538 (554)
T PF07919_consen  468 SSPLRVLASV---PPSAIVG-EPFTLSYTIENP-TNHFQTFELSME--PSDDF-MFSGPKQTTFS-LLPFSRHTVRYNLL  538 (554)
T ss_pred             CCCcEEEEec---CCccccC-cEEEEEEEEECC-CCccEEEEEEEc--cCCCE-EEECCCcCceE-ECCCCcEEEEEEEE
Confidence            3345555555   6777888 899999999994 445556666532  45669 99999988885 99999999999999


Q ss_pred             EceeeeEEeecEEEE
Q 031356          106 AKVKGMFHGSPALIT  120 (161)
Q Consensus       106 p~~~G~f~~t~A~Vt  120 (161)
                      |...|...++.=.|.
T Consensus       539 pl~~G~~~lP~l~v~  553 (554)
T PF07919_consen  539 PLVAGWWILPRLKVR  553 (554)
T ss_pred             EccCCcEECCcEEEe
Confidence            999999988766654

The region in question is approximately 150 residues long.

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds

Probab=93.89  E-value=0.094  Score=37.94  Aligned_cols=69  Identities=17%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             ccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEe--cCc------eeeEEEeecCCCceEEEEEEEEceee
Q 031356           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVI--SGN------ISQSWERLDAGGILSHSFELDAKVKG  110 (161)
Q Consensus        39 ~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv--~G~------~s~~~~ri~pg~nvsH~vvv~p~~~G  110 (161)
                      .+.+..| +|+++..++.|-.+.+-++|++.=-.+      .+  .|.      .....-.|+||+..++.+.+.|..+|
T Consensus         8 ~~~~~vG-~d~~v~v~~~N~~~~~l~~v~~~l~~~------~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~yG   80 (107)
T PF00927_consen    8 PGDPVVG-QDFTVSVSFTNPSSEPLRNVSLNLCAF------TVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQYG   80 (107)
T ss_dssp             ESEEBTT-SEEEEEEEEEE-SSS-EECEEEEEEEE------EEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSHE
T ss_pred             CCCccCC-CCEEEEEEEEeCCcCccccceeEEEEE------EEEECCcccccEeEEEcceeeCCCCEEEEEEEEEceeEe
Confidence            4678899 999999999999999988877653100      11  133      24456679999999999999999999


Q ss_pred             eEEe
Q 031356          111 MFHG  114 (161)
Q Consensus       111 ~f~~  114 (161)
                      .-..
T Consensus        81 ~~~~   84 (107)
T PF00927_consen   81 PKQL   84 (107)
T ss_dssp             EECC
T ss_pred             cchh
Confidence            8444

Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....

>COG1470 Predicted membrane protein [Function unknown]

Probab=93.26  E-value=0.45  Score=44.35  Aligned_cols=95  Identities=18%  Similarity=0.283  Sum_probs=64.9

Q ss_pred             ccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceE-ecCceeeEEEeecCCCceEEEEEEE-E--ceeeeEEeec
Q 031356           41 RLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDV-ISGNISQSWERLDAGGILSHSFELD-A--KVKGMFHGSP  116 (161)
Q Consensus        41 ~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~i-v~G~~s~~~~ri~pg~nvsH~vvv~-p--~~~G~f~~t~  116 (161)
                      .+..| ++.++...|.|.|+.|=.||+|+=+ =|++ +++ |++   .+++.|+||++.+-.++++ |  ...|-|..+-
T Consensus       392 t~taG-ee~~i~i~I~NsGna~LtdIkl~v~-~Pqg-Wei~Vd~---~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i  465 (513)
T COG1470         392 TITAG-EEKTIRISIENSGNAPLTDIKLTVN-GPQG-WEIEVDE---STIPSLEPGESKTVSLTITVPEDAGAGDYRITI  465 (513)
T ss_pred             EecCC-ccceEEEEEEecCCCccceeeEEec-CCcc-ceEEECc---ccccccCCCCcceEEEEEEcCCCCCCCcEEEEE
Confidence            45678 8999999999999999999999875 3443 554 232   2899999999999999999 4  3566676544


Q ss_pred             EEEEEEcCCCcce--eEEeecCCCcee
Q 031356          117 ALITFRIPTKAAL--QEAYSTPMLPLD  141 (161)
Q Consensus       117 A~VtY~~~~~~~~--q~a~Ss~~g~~~  141 (161)
                      ...+=..+.+..+  .++-||.-+-.+
T Consensus       466 ~~ksDq~s~e~tlrV~V~~sS~st~iG  492 (513)
T COG1470         466 TAKSDQASSEDTLRVVVGQSSTSTYIG  492 (513)
T ss_pred             EEeeccccccceEEEEEeccccchhhh
Confidence            4433333333322  255566555433

>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo

Probab=92.74  E-value=0.54  Score=33.40  Aligned_cols=66  Identities=18%  Similarity=0.288  Sum_probs=37.1

Q ss_pred             EEEEEEEEecCCcc---------eeeEEEecCCCCCCCceEecCce---eeEEEeecCCCceEEEEEEEEce--eeeEEe
Q 031356           49 ISVSIDIHNQGTST---------AYDVSLTDDSWPQDKFDVISGNI---SQSWERLDAGGILSHSFELDAKV--KGMFHG  114 (161)
Q Consensus        49 vtV~y~IyNvG~s~---------A~dV~l~D~sfp~~~F~iv~G~~---s~~~~ri~pg~nvsH~vvv~p~~--~G~f~~  114 (161)
                      +.++++|-|.|+.+         -+|+.|.|. =..+.|.--.|.+   -..=..|+||+..+...++....  .|.|.+
T Consensus         2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~-~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~   80 (82)
T PF12690_consen    2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDK-EGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL   80 (82)
T ss_dssp             EEEEEEEEE-SSS-EEEEESSS--EEEEEE-T-T--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred             EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECC-CCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence            56788888888743         456666652 2233343344443   33557899999999999998776  788876


Q ss_pred             e
Q 031356          115 S  115 (161)
Q Consensus       115 t  115 (161)
                      .
T Consensus        81 ~   81 (82)
T PF12690_consen   81 E   81 (82)
T ss_dssp             E
T ss_pred             e
Confidence            4

It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=92.49  E-value=2.7  Score=29.61  Aligned_cols=74  Identities=16%  Similarity=0.181  Sum_probs=51.7

Q ss_pred             eecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEE-EceeeeEEe
Q 031356           36 KASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELD-AKVKGMFHG  114 (161)
Q Consensus        36 ~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~-p~~~G~f~~  114 (161)
                      ++.=.....| +..+..++|.|.|..++ ..++....-..+.|.+--.     =..|+||+..+-.+.+. +...|.|..
T Consensus        10 ~ldFG~v~~g-~~~~~~v~l~N~s~~p~-~f~v~~~~~~~~~~~v~~~-----~g~l~PG~~~~~~V~~~~~~~~g~~~~   82 (102)
T PF14874_consen   10 ELDFGNVFVG-QTYSRTVTLTNTSSIPA-RFRVRQPESLSSFFSVEPP-----SGFLAPGESVELEVTFSPTKPLGDYEG   82 (102)
T ss_pred             EEEeeEEccC-CEEEEEEEEEECCCCCE-EEEEEeCCcCCCCEEEECC-----CCEECCCCEEEEEEEEEeCCCCceEEE
Confidence            3444556677 89999999999999976 4444433323455654321     13699999999999999 677788875


Q ss_pred             ec
Q 031356          115 SP  116 (161)
Q Consensus       115 t~  116 (161)
                      .-
T Consensus        83 ~l   84 (102)
T PF14874_consen   83 SL   84 (102)
T ss_pred             EE
Confidence            43

>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B

Probab=92.45  E-value=0.7  Score=41.89  Aligned_cols=73  Identities=15%  Similarity=0.308  Sum_probs=51.0

Q ss_pred             ceEEEEeeecccccccCceeEEEEEEEEecCCccee-------eEEEe--------cCCCCCCCceEecCceeeEE-Eee
Q 031356           29 PFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAY-------DVSLT--------DDSWPQDKFDVISGNISQSW-ERL   92 (161)
Q Consensus        29 a~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~-------dV~l~--------D~sfp~~~F~iv~G~~s~~~-~ri   92 (161)
                      +.-+.-|-..-+|-|.| +.+.++++|.|.|+++-+       +|.+.        ++.||++   ++.--++++= +-|
T Consensus       265 ~~~V~~kv~~a~Y~VPG-R~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~---lla~GL~v~d~~pI  340 (399)
T TIGR03079       265 PNPVSINVTKANYDVPG-RALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRE---LLAEGLEVDDQSAI  340 (399)
T ss_pred             CCceEEEEeccEEecCC-cEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHH---HhhccceeCCCCCc
Confidence            33566777778999999 999999999999998753       33333        3455554   2222334333 359


Q ss_pred             cCCCceEEEEEEE
Q 031356           93 DAGGILSHSFELD  105 (161)
Q Consensus        93 ~pg~nvsH~vvv~  105 (161)
                      .|||+.+-++.+.
T Consensus       341 ~PGETr~v~v~aq  353 (399)
T TIGR03079       341 APGETVEVKMEAK  353 (399)
T ss_pred             CCCcceEEEEEEe
Confidence            9999998887765

Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.

>PF13584 BatD: Oxygen tolerance

Probab=90.87  E-value=4.2  Score=36.59  Aligned_cols=94  Identities=17%  Similarity=0.201  Sum_probs=68.1

Q ss_pred             EEEEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEe--ecCCCceEEEEEEEEce
Q 031356           31 IVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWER--LDAGGILSHSFELDAKV  108 (161)
Q Consensus        31 LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~r--i~pg~nvsH~vvv~p~~  108 (161)
                      +=.+-+...+.+.+| +.++.+++|-=.|.-+  .+.+-+-.+| +.|++-..........  =...+..+-.+.++|++
T Consensus       273 f~l~~~~~~~~~~~G-e~vt~ti~i~g~Gn~~--~~~lP~l~~~-~~~~vy~~~~~~~~~~~~~g~~g~~~~~~~~ip~~  348 (484)
T PF13584_consen  273 FSLSQSWDPTEVKVG-EPVTRTITISGEGNLP--SIQLPPLNLP-KGFRVYPPKPQEQDKPSGGGLTGSRTFKYTLIPKK  348 (484)
T ss_pred             EEEEEEcCcccccCC-CeEEEEEEEEEEcchh--cccCCCCCCC-cccEEcCCCccccccccCCcceEEEEEEEEEEeCC
Confidence            444555677889999 9999999998777654  2334443344 7788777665443322  22345778899999999


Q ss_pred             eeeEEeecEEEEEEcCCCcc
Q 031356          109 KGMFHGSPALITFRIPTKAA  128 (161)
Q Consensus       109 ~G~f~~t~A~VtY~~~~~~~  128 (161)
                      .|.|.+++-.+.|-+++..+
T Consensus       349 ~G~~~lP~i~~~~fdp~~~~  368 (484)
T PF13584_consen  349 PGDFTLPAIRFSWFDPQTGK  368 (484)
T ss_pred             CCeEEcCCeEEEEEcCCCCe
Confidence            99999999999999998755

>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]

Probab=90.49  E-value=1  Score=40.88  Aligned_cols=82  Identities=22%  Similarity=0.248  Sum_probs=56.0

Q ss_pred             eeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCce-eeEEEeecC--CCceEEEEEEE---Ece
Q 031356           35 KKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNI-SQSWERLDA--GGILSHSFELD---AKV  108 (161)
Q Consensus        35 K~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~-s~~~~ri~p--g~nvsH~vvv~---p~~  108 (161)
                      =+.....+..| +++.+..+++|.|...+.|+.+... .... |....+.. ......+..  |+-.++.+.+.   ..+
T Consensus        36 ~~~~p~~~~~~-~~~~l~v~~~n~~~~~~~~v~v~i~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~V~~~a~  112 (500)
T COG1361          36 TNYSPNVARPG-EDVDLTVTIENVGELLAEDVKVEIT-PEYP-FSLVSGETLLLSIGTLNFLGGEPATVKFKLTVDENAK  112 (500)
T ss_pred             ccccCcccCcc-cceEEEEEeccccccccccEEEEEE-eccc-ceeeEEEeecCCCceeeecCCCcceEEEEEEEcCCCC
Confidence            33444555556 8999999999999998888888763 2222 88888876 333444444  56666666444   677


Q ss_pred             eeeEEeecEEE
Q 031356          109 KGMFHGSPALI  119 (161)
Q Consensus       109 ~G~f~~t~A~V  119 (161)
                      .|.+++.-..-
T Consensus       113 ~g~y~i~v~~~  123 (500)
T COG1361         113 SGDYEIDVYVS  123 (500)
T ss_pred             CCcEEEeEEEE
Confidence            88888877764

>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=89.46  E-value=4.5  Score=31.22  Aligned_cols=78  Identities=18%  Similarity=0.233  Sum_probs=57.7

Q ss_pred             ccccCceeEEEEEEEEecC------------CcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEEce
Q 031356           41 RLKSGAERISVSIDIHNQG------------TSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKV  108 (161)
Q Consensus        41 ~~v~g~~~vtV~y~IyNvG------------~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p~~  108 (161)
                      -..+| +-+.++..|-|..            ....+-.++.++   ++.| +|+|--...+.- ..|+..+-.++|.|.+
T Consensus        26 ~~~vG-qpi~~~l~I~~~~~W~~~~~~~~~~~~~~~~yei~a~---~~~W-lV~Grrrg~f~~-~~~~~~~~~l~LIPL~   99 (147)
T PF12584_consen   26 PCRVG-QPIPAELRIKNSRKWSSEDQEESSNEDTEFMYEIVAD---SDNW-LVSGRRRGVFSL-SDGSEHEIPLTLIPLR   99 (147)
T ss_pred             ceEeC-CeEEEEEEEEEcccCCccccccccCCCccEEEEEecC---CCcE-EEeccCcceEEe-cCCCeEEEEEEEEecc
Confidence            34678 8999999999972            112333344221   3444 899988777755 8888889999999999


Q ss_pred             eeeEEeecEEEEEEcC
Q 031356          109 KGMFHGSPALITFRIP  124 (161)
Q Consensus       109 ~G~f~~t~A~VtY~~~  124 (161)
                      .|+..++..+|+=...
T Consensus       100 ~G~L~lP~V~i~~~~~  115 (147)
T PF12584_consen  100 AGYLPLPKVEIRPYDP  115 (147)
T ss_pred             cceecCCEEEEEeccC
Confidence            9999999999876663

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].

>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown

Probab=86.38  E-value=11  Score=28.77  Aligned_cols=30  Identities=30%  Similarity=0.300  Sum_probs=25.2

Q ss_pred             cccccCceeEEEEEEEEecCCcceeeEEEec
Q 031356           40 KRLKSGAERISVSIDIHNQGTSTAYDVSLTD   70 (161)
Q Consensus        40 ~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D   70 (161)
                      +.+..+ +.+.|..+|-|.|+-++.++.++=
T Consensus        56 ~~l~~~-~~~~v~g~V~N~g~~~i~~c~i~~   85 (149)
T PF09624_consen   56 KRLQYS-ESFYVDGTVTNTGKFTIKKCKITV   85 (149)
T ss_pred             eeeeec-cEEEEEEEEEECCCCEeeEEEEEE
Confidence            334456 899999999999999999998875

It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.

>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane []

Probab=85.74  E-value=13  Score=32.47  Aligned_cols=95  Identities=15%  Similarity=0.244  Sum_probs=67.6

Q ss_pred             EEEEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCC-CCCceEecCce-eeEE-EeecCCCceEEEEEEEE-
Q 031356           31 IVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWP-QDKFDVISGNI-SQSW-ERLDAGGILSHSFELDA-  106 (161)
Q Consensus        31 LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp-~~~F~iv~G~~-s~~~-~ri~pg~nvsH~vvv~p-  106 (161)
                      ++.-|.  ...++.| +.+.+-+.+-|.|+ ..+.|...+-||. +.+|...==++ -..+ -.|+||+..|-.|...| 
T Consensus        86 ~~F~~~--~~~l~aG-~~~~~LvgftN~g~-~~~~V~~i~aSl~~p~d~~~~iqNfTa~~y~~~V~pg~~aT~~YsF~~~  161 (285)
T PF03896_consen   86 ILFPKP--TKKLPAG-EPVKFLVGFTNKGS-EPFTVESIEASLRYPQDYSYYIQNFTAVRYNREVPPGEEATFPYSFTPS  161 (285)
T ss_pred             EEeccc--cccccCC-CeEEEEEEEEeCCC-CCEEEEEEeeeecCccccceEEEeecccccCcccCCCCeEEEEEEEecc
Confidence            444444  4667778 99999999999999 5788999886666 45554433333 2233 36999999999999997 


Q ss_pred             --ceeeeEEeecEEEEEEcCCCccee
Q 031356          107 --KVKGMFHGSPALITFRIPTKAALQ  130 (161)
Q Consensus       107 --~~~G~f~~t~A~VtY~~~~~~~~q  130 (161)
                        -..+.|.+.- .+.|++.++..-|
T Consensus       162 ~~l~pr~f~L~i-~l~y~d~~g~~y~  186 (285)
T PF03896_consen  162 EELAPRPFGLVI-NLIYEDSDGNQYQ  186 (285)
T ss_pred             hhcCCcceEEEE-EEEEEeCCCCEEE
Confidence              3456677765 5569988775433

; GO: 0005783 endoplasmic reticulum

>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=85.16  E-value=4.9  Score=27.94  Aligned_cols=65  Identities=9%  Similarity=0.207  Sum_probs=45.0

Q ss_pred             cccccCce-eEEEEEEEEecCCcceeeEEEecCCCCCCCceEec---Cceee-EEE-eecCCCceEEEEEE
Q 031356           40 KRLKSGAE-RISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVIS---GNISQ-SWE-RLDAGGILSHSFEL  104 (161)
Q Consensus        40 ~~~v~g~~-~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~---G~~s~-~~~-ri~pg~nvsH~vvv  104 (161)
                      +.-.+|++ -.-+..+|.|.|+.+-.++.|.=+.+..+-+.+..   |.... +|- .|+||++.+--|+.
T Consensus         9 ~sW~~~g~~y~qy~v~I~N~~~~~I~~~~i~~~~l~~~iW~l~~~~~~~y~lPs~~~~i~pg~s~~FGYI~   79 (80)
T PF09478_consen    9 NSWTENGQTYTQYDVTITNNGSKPIKSLKISIDNLYGSIWGLDKVSGNTYTLPSYQPTIKPGQSFTFGYIS   79 (80)
T ss_pred             eEEEeCCEEEEEEEEEEEECCCCeEEEEEEEECccchhheeEEeccCCEEECCccccccCCCCEEEEEEEe
Confidence            33344433 23467889999999999999988767666676665   22232 554 89999988776653

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region

>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional

Probab=84.96  E-value=6  Score=35.80  Aligned_cols=92  Identities=15%  Similarity=0.198  Sum_probs=48.3

Q ss_pred             hhhHHHHHHHHHHHhhhcccCCCCceEEEE-e--eecccc--cccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCce
Q 031356            5 ISKSLISVLIALFLISSSFASSDVPFIVAH-K--KASLKR--LKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFD   79 (161)
Q Consensus         5 ~~~~~~~~llal~~v~~~~~~~~~a~Llvs-K--~i~~~~--~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~   79 (161)
                      +..++..+|++++.-|..+++.+.+-+-|. |  .+....  +..|    .+++.|.|.|..+ ...++.          
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~a~~~~~v~Vti~d~~c~p~~~tVpAG----~~~f~V~N~~~~~-~Efe~~----------   70 (375)
T PRK10378          6 RRNALQLALAALFSSAFMANAADIPQVKVTVNDKQCEPMTLTVNAG----KTQFIIQNHSQKA-LEWEIL----------   70 (375)
T ss_pred             hhhHHHHHHHHhccCCcccccccCCceEEEEECCccccCceeeCCC----CEEEEEEeCCCCc-ceEEee----------
Confidence            334455555555544444444443333222 1  122222  2333    2667778888755 334443          


Q ss_pred             EecCce-eeEEEeecCCCceEEEEEEEEceeeeEEeec
Q 031356           80 VISGNI-SQSWERLDAGGILSHSFELDAKVKGMFHGSP  116 (161)
Q Consensus        80 iv~G~~-s~~~~ri~pg~nvsH~vvv~p~~~G~f~~t~  116 (161)
                        .|.+ -...|.|.||.+-+-+   .+.+.|.|.|.=
T Consensus        71 --~~~~vv~e~EnIaPG~s~~l~---~~L~pGtY~~~C  103 (375)
T PRK10378         71 --KGVMVVEERENIAPGFSQKMT---ANLQPGEYDMTC  103 (375)
T ss_pred             --ccccccccccccCCCCceEEE---EecCCceEEeec
Confidence              3221 1236899999887744   444689888864

>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.28  E-value=0.31  Score=43.72  Aligned_cols=69  Identities=19%  Similarity=0.314  Sum_probs=0.0

Q ss_pred             eeEEEEEEEEecCCcceeeE---EEecCCCCCCCceEecCc-----------------eeeEEEeecCCCceEEEEEEEE
Q 031356           47 ERISVSIDIHNQGTSTAYDV---SLTDDSWPQDKFDVISGN-----------------ISQSWERLDAGGILSHSFELDA  106 (161)
Q Consensus        47 ~~vtV~y~IyNvG~s~A~dV---~l~D~sfp~~~F~iv~G~-----------------~s~~~~ri~pg~nvsH~vvv~p  106 (161)
                      .+..|+-+|.|.|+.+-.=+   +|. |+.|-+.|.+-++.                 ..--|..|+||++++|+|=+-.
T Consensus        38 ~nt~VkA~VTNtG~e~l~llK~ntil-D~~Pv~kv~V~~~g~~V~F~Gi~~~~~~~~L~~d~F~~L~pG~sve~~fDiA~  116 (359)
T PF02102_consen   38 GNTRVKATVTNTGSEDLKLLKYNTIL-DSAPVKKVSVYKDGKEVPFTGIRLRYDTSGLTEDAFQTLAPGESVEVEFDIAE  116 (359)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEEEEEEEeCCCcceEEEeeceec-CCCceeEEEEEcCCcccccccEEEEEecCCCCHHHceecCCCCeEEEEEcchh
Confidence            47789999999999864322   233 46788888776553                 3456888999999999987652


Q ss_pred             ----ceeeeEEeec
Q 031356          107 ----KVKGMFHGSP  116 (161)
Q Consensus       107 ----~~~G~f~~t~  116 (161)
                          ...|.|.+.+
T Consensus       117 ~~dLs~gG~~~i~a  130 (359)
T PF02102_consen  117 THDLSSGGTYTISA  130 (359)
T ss_dssp             --------------
T ss_pred             eeecCCCccEEEEE
Confidence                2345565554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.

>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins

Probab=83.34  E-value=8.4  Score=27.01  Aligned_cols=55  Identities=16%  Similarity=0.318  Sum_probs=36.8

Q ss_pred             EEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEEceeeeEEee
Q 031356           50 SVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGS  115 (161)
Q Consensus        50 tV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~t  115 (161)
                      .+..++-|.|..++ .+++.|+.+..        ..+.+ =.|+||+++++..-+ ....|-|-++
T Consensus        21 ~l~l~l~N~g~~~~-~~~v~~~~y~~--------~~~~~-~~v~ag~~~~~~w~l-~~s~gwYDl~   75 (89)
T PF05506_consen   21 NLRLTLSNPGSAAV-TFTVYDNAYGG--------GGPWT-YTVAAGQTVSLTWPL-AASGGWYDLT   75 (89)
T ss_pred             EEEEEEEeCCCCcE-EEEEEeCCcCC--------CCCEE-EEECCCCEEEEEEee-cCCCCcEEEE
Confidence            67889999988655 89999964421        11111 267888888888777 5566666654

; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process

>PRK02710 plastocyanin; Provisional

Probab=83.31  E-value=14  Score=27.40  Aligned_cols=20  Identities=15%  Similarity=0.295  Sum_probs=14.3

Q ss_pred             eecCCCceEEEEEEEEceeeeEEe
Q 031356           91 RLDAGGILSHSFELDAKVKGMFHG  114 (161)
Q Consensus        91 ri~pg~nvsH~vvv~p~~~G~f~~  114 (161)
                      .+.||+..++++.-    .|.|.|
T Consensus        83 ~~~pg~t~~~tF~~----~G~y~y  102 (119)
T PRK02710         83 AFAPGESWEETFSE----AGTYTY  102 (119)
T ss_pred             ccCCCCEEEEEecC----CEEEEE
Confidence            47899998877764    566654

>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []

Probab=82.09  E-value=9.7  Score=34.64  Aligned_cols=72  Identities=18%  Similarity=0.285  Sum_probs=44.6

Q ss_pred             EEEeeecccccccCceeEEEEEEEEecCCccee-------eEEEecCCCCCC------CceEecCceeeEEE-eecCCCc
Q 031356           32 VAHKKASLKRLKSGAERISVSIDIHNQGTSTAY-------DVSLTDDSWPQD------KFDVISGNISQSWE-RLDAGGI   97 (161)
Q Consensus        32 lvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~-------dV~l~D~sfp~~------~F~iv~G~~s~~~~-ri~pg~n   97 (161)
                      +--|-..-+|-+.| +.++++++|.|.|+++.+       +|.+.|...+.+      +. +-.+-++++=+ -|+||++
T Consensus       249 V~~~v~~A~Y~vpg-R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l-~A~~gL~vs~~~pI~PGET  326 (381)
T PF04744_consen  249 VKVKVTDATYRVPG-RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDEL-LAERGLSVSDNSPIAPGET  326 (381)
T ss_dssp             EEEEEEEEEEESSS-SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTT-EETT-EEES--S-B-TT-E
T ss_pred             eEEEEeccEEecCC-cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhh-hccCcceeCCCCCcCCCce
Confidence            55566667888999 999999999999999865       366666444422      11 22223555444 7999999


Q ss_pred             eEEEEEEE
Q 031356           98 LSHSFELD  105 (161)
Q Consensus        98 vsH~vvv~  105 (161)
                      .+-++.+.
T Consensus       327 rtl~V~a~  334 (381)
T PF04744_consen  327 RTLTVEAQ  334 (381)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEee
Confidence            99888875

These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.

>COG1572 Uncharacterized conserved protein [Function unknown]

Probab=80.84  E-value=5.8  Score=38.08  Aligned_cols=68  Identities=18%  Similarity=0.213  Sum_probs=55.7

Q ss_pred             cccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCce--eeEEEeecCCCceEEEEEEEEceeeeEEeecE
Q 031356           40 KRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNI--SQSWERLDAGGILSHSFELDAKVKGMFHGSPA  117 (161)
Q Consensus        40 ~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~--s~~~~ri~pg~nvsH~vvv~p~~~G~f~~t~A  117 (161)
                      ....++ +.+++.|+|-|.|.+.|.+++..+         ++.|..  ..+..-+.||+..+-.|.-.+...|.++++.-
T Consensus       417 ~~~~~~-k~~~i~l~i~N~G~~~a~~~~v~l---------~lnG~~~~~~~i~~l~~~~s~e~~v~~~~~s~G~~~Ls~~  486 (606)
T COG1572         417 TQESVN-KALTITLNIKNLGEAYASGFQVDL---------VLNGTIVTVDSIPGLESGESREVVVNEVSTSGGSHTLSVV  486 (606)
T ss_pred             ceEeec-ceEEEEEEEEeccccccCCceEEE---------EEcCceeeeEecccCCCCCceEEEEEEEecCCCceEEEEE
Confidence            345566 899999999999999999998887         677865  56677788888888888877889999988653

>KOG2291 consensus Oligosaccharyltransferase, alpha subunit (ribophorin I) [Posttranslational modification, protein turnover, chaperones]

Probab=80.75  E-value=5  Score=38.18  Aligned_cols=72  Identities=22%  Similarity=0.218  Sum_probs=42.3

Q ss_pred             CCCchhhHHHHHHHHHHHhhhcccCCCCceEE---EEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCC
Q 031356            1 MASPISKSLISVLIALFLISSSFASSDVPFIV---AHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQ   75 (161)
Q Consensus         1 ~~~~~~~~~~~~llal~~v~~~~~~~~~a~Ll---vsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~   75 (161)
                      |+..+...++.++|.++++++.++....+-+.   |-+.|+...-.+   ..+.++.|-|+|+.+|...-+.=...+.
T Consensus         1 M~~~~~~~~~~l~l~l~aia~~~a~~a~~~w~n~nv~RTIDlsS~iv---K~tt~l~i~N~g~ePatey~~a~~~~~~   75 (602)
T KOG2291|consen    1 MAQVSASWALVLVLLLFAIASGAASSAEQDWVNVNVERTIDLSSQIV---KVTTELSIENIGSEPATEYLLAFEKELG   75 (602)
T ss_pred             CcchhhHHHHHHHHHHHHHhhccccCCccccccccceEEEehhhhhh---hheeEEEEEecCCCchheEEEeccCccc
Confidence            77655554444555555665554433333333   334444333332   3578899999999999988877544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
3idu_A	127	Uncharacterized protein; all beta-protein, structu	98.07
2l0d_A	114	Cell surface protein; structural genomics, northea	97.39
2xzz_A	102	Protein-glutamine gamma-glutamyltransferase K; 2.3	95.26
2kut_A	122	Uncharacterized protein; structural genomics, PSI-	95.06
3hrz_B	252	Cobra venom factor; serine protease, glycosilated,	95.04
2x3c_A	343	Toxic extracellular endopeptidase; hydrolase; 1.99	94.21
3isy_A	120	Bsupi, intracellular proteinase inhibitor; intrace	92.13
1vjj_A	692	Protein-glutamine glutamyltransferase E; transglut	91.9
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	90.83
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	90.76
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	90.29
1yew_A	382	Particulate methane monooxygenase, B subunit; memb	89.96
1ex0_A	731	Coagulation factor XIII A chain; transglutaminase,	89.84
3rfr_A	419	PMOB; membrane, oxidoreductase; 2.68A {Methylocyst	88.88
1g0d_A	695	Protein-glutamine gamma-glutamyltransferase; tissu	87.09
2q3z_A	687	Transglutaminase 2; transglutaminase 2, tissue tra	87.01
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	85.92
3c75_A	132	Amicyanin; copper proteins, electron transfer comp	84.73
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	84.47
1iuz_A	98	Plastocyanin; electron transport; 1.60A {Ulva pert	83.71
3prx_B	1642	Cobra venom factor; immune system, complement, imm	82.82
2hr0_B	915	Complement C3 alpha' chain; complement component C	81.68

>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A

Probab=98.07  E-value=5.5e-05  Score=57.00  Aligned_cols=85  Identities=12%  Similarity=0.115  Sum_probs=63.4

Q ss_pred             cccCCCCceEEEEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCcee-eEEEeecCCCceEE
Q 031356           22 SFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNIS-QSWERLDAGGILSH  100 (161)
Q Consensus        22 ~~~~~~~a~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s-~~~~ri~pg~nvsH  100 (161)
                      .++....|.|.++.. ....+..| +.++++.+|.|.|+.+|.+.++.-         .+.|..- ...-.|+||++.+-
T Consensus        10 ~~~~~~~pDL~V~is-~P~~v~~G-~~~ti~vtV~N~G~~~a~~~~V~l---------yvng~~v~t~~v~La~G~s~tv   78 (127)
T 3idu_A           10 LATTFEFPDLTVEIK-GPDVVGVN-KLAEYEVHVKNLGGIGVPSTKVRV---------YINGTLYKNWTVSLGPKEEKVL   78 (127)
T ss_dssp             C--CCSSCCEEEEEE-SCSEECTT-CCEEEEEEEEECSSSCEEEEEEEE---------EETTEEEEEEEEEECTTCEEEE
T ss_pred             EeeeccCCCeEEEec-CCCcccCC-CEEEEEEEEEECCCCccCCcEEEE---------EECCEEEeeEEeccCCCCeEEE
Confidence            355677899999554 57788889 999999999999998766655543         2344431 11225999999999


Q ss_pred             EEEEEEceeeeEEeecE
Q 031356          101 SFELDAKVKGMFHGSPA  117 (161)
Q Consensus       101 ~vvv~p~~~G~f~~t~A  117 (161)
                      .|...|...|.|++.+-
T Consensus        79 ~f~~~~~~~G~~~v~Av   95 (127)
T 3idu_A           79 TFNWTPTQEGMYRINAT   95 (127)
T ss_dssp             EEEECCSSCEEEEEEEE
T ss_pred             EEEEEcCCCcEEEEEEE
Confidence            99999999999988654

>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}

Probab=97.39  E-value=0.0016  Score=48.15  Aligned_cols=76  Identities=17%  Similarity=0.238  Sum_probs=58.2

Q ss_pred             ceEEEEeeecccccccCceeEEEEEEEEecCCcc--eeeEEEecCCCCCCCceEecCce--eeEEEeecCCCceEEEEEE
Q 031356           29 PFIVAHKKASLKRLKSGAERISVSIDIHNQGTST--AYDVSLTDDSWPQDKFDVISGNI--SQSWERLDAGGILSHSFEL  104 (161)
Q Consensus        29 a~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~--A~dV~l~D~sfp~~~F~iv~G~~--s~~~~ri~pg~nvsH~vvv  104 (161)
                      |.|.+.- +....+++| +.++|+.+|.|+|..+  +..|.|..           .|..  ......|++|++.+-.|..
T Consensus         3 PDL~vt~-itP~~~~~~-~~~ti~atVkN~G~~~a~~~~V~ly~-----------~g~~v~t~~v~~LaaG~s~tv~~~w   69 (114)
T 2l0d_A            3 PDLVPVS-LTPVTVVPN-TVNTMTATIENQGNKDSTSFNVSLLV-----------DGIVVDTQTVTSLESENSTNVDFHW   69 (114)
T ss_dssp             CCEEEEE-EECSEECTT-SEEEEEEEEEECSSSCBCCEEEEEEE-----------TTEEEEEEEESCBCBTCEEEEEEEE
T ss_pred             CCcEEEe-ccCCCcCCC-CeEEEEEEEEECCCCCCCCEEEEEEE-----------CCEEEcceecccccCCCEEEEEEEE
Confidence            6676665 345668899 9999999999999874  45566554           3544  3456679999999999999


Q ss_pred             EEc-eeeeEEeecE
Q 031356          105 DAK-VKGMFHGSPA  117 (161)
Q Consensus       105 ~p~-~~G~f~~t~A  117 (161)
                      .|+ ..|.|.++..
T Consensus        70 ~~~~~~G~ytl~a~   83 (114)
T 2l0d_A           70 TLDGTANSYTLTVN   83 (114)
T ss_dssp             ECCCSCSEEEEEEE
T ss_pred             eecCcCceEEEEEE
Confidence            998 5899998764

>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}

Probab=95.26  E-value=0.034  Score=40.10  Aligned_cols=76  Identities=12%  Similarity=0.035  Sum_probs=60.2

Q ss_pred             ccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEEceeeeEEeecEE
Q 031356           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPAL  118 (161)
Q Consensus        39 ~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~t~A~  118 (161)
                      ...+++| +++++++++.|-=..+-.|..++=++-     .+..+ .......|+||+.+++.+.++|++.|.-.+   .
T Consensus        13 ~g~~~v~-~~l~v~vsf~NPL~~~L~~c~~~vEG~-----GL~~~-~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L---~   82 (102)
T 2xzz_A           13 LGAAVVG-QECEVQIVFKNPLPVTLTNVVFRLEGS-----GLQRP-KILNVGDIGGNETVTLRQSFVPVRPGPRQL---I   82 (102)
T ss_dssp             SSCCCSS-SCEEEEEEEECCSSSCBCSEEEEEEET-----TTEEE-EEEEECCBCTTCEEEEEEEECCCSCSSCCC---E
T ss_pred             CCCcccC-CeEEEEEEEECCCCCcccCEEEEEECC-----CCCcc-eEEEcCcCCCCCEEEEEEEEecCcccceEE---E
Confidence            5778899 999999999999988888888773210     15555 677888999999999999999999998655   4


Q ss_pred             EEEEcC
Q 031356          119 ITFRIP  124 (161)
Q Consensus       119 VtY~~~  124 (161)
                      +++...
T Consensus        83 a~f~s~   88 (102)
T 2xzz_A           83 ASLDSP   88 (102)
T ss_dssp             EEEECG
T ss_pred             EEEECC
Confidence            444443

>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}

Probab=95.06  E-value=0.028  Score=42.03  Aligned_cols=72  Identities=19%  Similarity=0.220  Sum_probs=51.0

Q ss_pred             ccccccCceeEEEEEEEEecCCc--ceeeEEEecCCCCCCCceEecCce--eeEEEeecCCCceEEEEEEE--Ecee---
Q 031356           39 LKRLKSGAERISVSIDIHNQGTS--TAYDVSLTDDSWPQDKFDVISGNI--SQSWERLDAGGILSHSFELD--AKVK---  109 (161)
Q Consensus        39 ~~~~v~g~~~vtV~y~IyNvG~s--~A~dV~l~D~sfp~~~F~iv~G~~--s~~~~ri~pg~nvsH~vvv~--p~~~---  109 (161)
                      ...+.+| +.++|+.+|-|+|..  +|..|.+.-++ |..     +|.+  +.....|+||++.+-.+.+.  ++..   
T Consensus         9 P~~p~~g-~~vTvsatVkN~Gt~~s~a~~V~~yl~~-p~~-----gg~~vgt~tv~~LaaG~s~t~~v~~~~~~~~~~~a   81 (122)
T 2kut_A            9 KETPFEG-EEITVSARVTNRGAAEAHNVPVAVYLGN-PAQ-----GGVEIGRDTISRIPVGGTGLARVQWKATRKLAGRA   81 (122)
T ss_dssp             TTSCCTT-CEEEEEEEEECCSSSCBCCCCEEECSSC-TTT-----CCCCCBCCCCSCBCTTCEEECCEEEECCCCCSSCC
T ss_pred             CCCCCCC-CeEEEEEEEEeCCCcccCcEEEEEEeCC-Ccc-----CCeEEeeEEccccCCCCeEEEEEEEecCCcccccc
Confidence            4567888 999999999999988  67778887765 321     2232  33457899999999555554  4443   


Q ss_pred             --eeEEeecE
Q 031356          110 --GMFHGSPA  117 (161)
Q Consensus       110 --G~f~~t~A  117 (161)
                        |.|.+.+.
T Consensus        82 ~~Gsy~v~Av   91 (122)
T 2kut_A           82 ANPGVPVYAV   91 (122)
T ss_dssp             SCCCCCCCEE
T ss_pred             cCceEEEEEE
Confidence              88887653

>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*

Probab=95.04  E-value=0.17  Score=41.26  Aligned_cols=74  Identities=12%  Similarity=-0.004  Sum_probs=53.5

Q ss_pred             ccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecC--ceeeEEEeecCCCceEEEEEEEEceeeeEEeec
Q 031356           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISG--NISQSWERLDAGGILSHSFELDAKVKGMFHGSP  116 (161)
Q Consensus        39 ~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G--~~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~t~  116 (161)
                      ...++.| +.+.+..++||..+.. .+|++.=.  ..+.|.....  ....+.-.|++|+..+..+.++|++.|..+++-
T Consensus        89 P~sv~rG-E~~~l~~~V~Ny~~~~-~~v~V~l~--~~~~~~~~~~~~~~~~~~v~v~a~~~~~v~f~i~p~~~G~~~i~v  164 (252)
T 3hrz_B           89 PYSVVKN-EQVEIRAILHNYVNED-IYVRVELL--YNPAFCSASTKGQRYRQQFPIKALSSRAVPFVIVPLEQGLHDVEI  164 (252)
T ss_dssp             CSCEETT-CCEEEEEEEEECSSSC-EEEEEEEC--CCTTEEESCCSSCCEEEEEEECTTEEEEEEEEEEECSSEEEEEEE
T ss_pred             CcEEeeC-CEEEEEEEEEcccCce-EEEEEEEE--cCCceEeecCCCCceEEEEEECCCCeEEEEEEEEeccCCcEEEEE
Confidence            3455677 9999999999998865 45554421  2345766542  223445689999999999999999999887754

>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A

Probab=94.21  E-value=0.044  Score=47.14  Aligned_cols=58  Identities=21%  Similarity=0.255  Sum_probs=43.4

Q ss_pred             eeEEEEEEEEecCCcceeeEE--EecCCCCCCCceEecCce---------------eeEEEeecCCCceEEEEEEE
Q 031356           47 ERISVSIDIHNQGTSTAYDVS--LTDDSWPQDKFDVISGNI---------------SQSWERLDAGGILSHSFELD  105 (161)
Q Consensus        47 ~~vtV~y~IyNvG~s~A~dV~--l~D~sfp~~~F~iv~G~~---------------s~~~~ri~pg~nvsH~vvv~  105 (161)
                      .++.|+.+|.|.|+.+..=++  +- |++|.+.|+|-.+-.               ...+-.|+||+++++.+-+-
T Consensus        36 ~~~~vk~tvtN~g~~~~~lLk~~~l-D~~~~~~~~V~~~G~~v~f~Gi~~~~~~~~~d~f~~L~pG~Sve~~~dla  110 (343)
T 2x3c_A           36 DDVRVNLTLTNTGDKPIRLLKWQLP-GSDDAPLFLVERDGQPVSYEGALIKRAAPTDKDFQLLKAGQSLTVQAEVS  110 (343)
T ss_dssp             SCCEEEEEEEECSSSCEEEEGGGSC-SSSCCCCEEEEETTEECCBCSCCCCCCCCCGGGEEEECTTCEEEEEEECT
T ss_pred             CCeEEEEEEEeCCCCceEeeccCCC-CcCccceEEEEeCCcccceeeEEEeccCCChhhcEEeCCCCeEEEEEehh
Confidence            589999999999998742211  22 468888999865421               23588999999999999984

>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}

Probab=92.13  E-value=0.57  Score=34.80  Aligned_cols=76  Identities=14%  Similarity=0.264  Sum_probs=49.6

Q ss_pred             cCceeEEEEEEEEecCCcce---------eeEEEecCCCCCCCceEecCce---eeEEEeecCCCceEEEEEEE-Eceee
Q 031356           44 SGAERISVSIDIHNQGTSTA---------YDVSLTDDSWPQDKFDVISGNI---SQSWERLDAGGILSHSFELD-AKVKG  110 (161)
Q Consensus        44 ~g~~~vtV~y~IyNvG~s~A---------~dV~l~D~sfp~~~F~iv~G~~---s~~~~ri~pg~nvsH~vvv~-p~~~G  110 (161)
                      .| ..+.++++|-|.|+.+-         +|+.|.|.. ....|....|..   -..-..|+||+..+...+.- +...|
T Consensus        16 ~g-~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~-G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG   93 (120)
T 3isy_A           16 EP-EQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSE-HKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPG   93 (120)
T ss_dssp             CS-SCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTT-CCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSE
T ss_pred             CC-CeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCC-CCEEEEccccchhhhhhceEEECCCCEEEEEEEeCCCCCCc
Confidence            56 79999999999998543         344454410 122222222322   23447899999999999998 56789


Q ss_pred             eEEeecEEEEEEcC
Q 031356          111 MFHGSPALITFRIP  124 (161)
Q Consensus       111 ~f~~t~A~VtY~~~  124 (161)
                      .|..   ++.++..
T Consensus        94 ~Ytl---~a~l~~~  104 (120)
T 3isy_A           94 TYEV---KVTFKGR  104 (120)
T ss_dssp             EEEE---EEEECCE
T ss_pred             cEEE---EEEEEee
Confidence            8887   4555543

>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*

Probab=91.90  E-value=0.49  Score=44.47  Aligned_cols=86  Identities=15%  Similarity=0.168  Sum_probs=68.7

Q ss_pred             EEEEeeecccc----------cccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEE
Q 031356           31 IVAHKKASLKR----------LKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSH  100 (161)
Q Consensus        31 LlvsK~i~~~~----------~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH  100 (161)
                      +++.|.|....          +++| +++++++++.|-=..+-.|..|+=++     =.+..|..+.....|+||+.+++
T Consensus       583 ~~~~~di~l~~P~l~I~v~g~~~v~-~~l~v~v~f~NPL~~~L~~c~~~vEG-----~GL~~~~~~~~~~~v~pg~~~~~  656 (692)
T 1vjj_A          583 VVVERDIILDNPTLTLEVLNEARVR-KPVNVQMLFSNPLDEPVRDCVLMVEG-----SGLLLGNLKIDVPTLGPKERSRV  656 (692)
T ss_dssp             EEEEEEEECBCCCEEEEECSCCBTT-SCEEEEEEEECCSSSCBCSEEEEEEC-----TTTSSSCEEEEECCBCTTCEEEE
T ss_pred             EEEEEEEEEcCCCEEEEeCCCcccC-CeEEEEEEEECCCCCcccceEEEEEC-----CCCCCCceEEEcCccCCCCEEEE
Confidence            88888775554          5788 99999999999999888888876321     11556677888899999999999


Q ss_pred             EEEEEEceeeeEEeecEEEEEEcCC
Q 031356          101 SFELDAKVKGMFHGSPALITFRIPT  125 (161)
Q Consensus       101 ~vvv~p~~~G~f~~t~A~VtY~~~~  125 (161)
                      .+.++|++.|.-.+   ++++...+
T Consensus       657 ~~~~~P~~~G~r~L---~a~f~s~~  678 (692)
T 1vjj_A          657 RFDILPSRSGTKQL---LADFSCNK  678 (692)
T ss_dssp             EEEECCCSCEEEEE---EEEEECSS
T ss_pred             EEEEEeccccceEE---EEEEECCc
Confidence            99999999999877   55665544

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=90.83  E-value=0.64  Score=36.66  Aligned_cols=80  Identities=15%  Similarity=0.213  Sum_probs=53.6

Q ss_pred             CCCceEEEEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEE--EeecCCCceEEEEE
Q 031356           26 SDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSW--ERLDAGGILSHSFE  103 (161)
Q Consensus        26 ~~~a~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~--~ri~pg~nvsH~vv  103 (161)
                      +..|.+-++..+.--.+. | +..+.+++|.|.|+++-   .|.|-       .---|-+...|  +.|+||++..-.+.
T Consensus       115 ~~~~~i~~~~~~dfG~i~-g-~~~~~~f~i~N~G~~pL---~I~~v-------~~scgct~~~~~~~~i~PGe~~~i~v~  182 (220)
T 2qsv_A          115 AQTGVMELSTYLDMGQLD-G-ETTKAAIEIRNVGAGPL---RLHSV-------TTRNPALTAVPDRTEIKPGGSTLLRIA  182 (220)
T ss_dssp             GGCCCEECCCEEEEEECT-T-SCEEEEEEEEECSSSCE---EEEEE-------EECSTTEEEEESCSEECTTCEEEEEEE
T ss_pred             ccCCEEEEEeEEeeeccC-C-CeEEEEEEEEECCCCCE---EEEEE-------EeCCCCEeeecCCccCCCCCEEEEEEE
Confidence            355667776333333333 6 89999999999999853   44441       12234454444  57999999998888


Q ss_pred             EEEcee-ee----EEeecE
Q 031356          104 LDAKVK-GM----FHGSPA  117 (161)
Q Consensus       104 v~p~~~-G~----f~~t~A  117 (161)
                      ..|+.. |.    |+-+-.
T Consensus       183 ~~~~~~~g~~~~~~~~~i~  201 (220)
T 2qsv_A          183 VDPQVMKAEGWQSIAADIS  201 (220)
T ss_dssp             ECHHHHHHTTCSEEEEEEE
T ss_pred             EecCCCCCcccceeccEEE
Confidence            889888 88    766433

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.76  E-value=0.35  Score=33.54  Aligned_cols=82  Identities=15%  Similarity=0.163  Sum_probs=55.3

Q ss_pred             CCceEEEEeee-cccccccCceeEEEEEEEEecCCcceeeEEEecCCCC-CCCceEecCceeeEEEeecCCCceEEEEEE
Q 031356           27 DVPFIVAHKKA-SLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWP-QDKFDVISGNISQSWERLDAGGILSHSFEL  104 (161)
Q Consensus        27 ~~a~LlvsK~i-~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp-~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv  104 (161)
                      -+|.+-.++.. .--....| ...+-+++|.|.|+.++ ..++..+.=+ ...|.+     +-.-..|+||+...-.+..
T Consensus         6 ~~P~i~~~~~~ldFG~v~~g-~~~~~~~~l~N~g~~p~-~~~~~~~~~~~~~~f~v-----~p~~g~i~pg~~~~i~V~f   78 (112)
T 2e6j_A            6 SGPKIHFNFELLDIGKVFTG-SAHCYEAILYNKGSIDA-LFNMTPPTSALGACFVF-----SPKEGIIEPSGVQAIQISF   78 (112)
T ss_dssp             CCCSEEESCSEEEEEEEESS-CCEEEEEEEEECCSSCE-EEEECCCSSHHHHHCEE-----ESSEEEECTTBCCEEEEEE
T ss_pred             CCCEEEECcccEecEeEEEC-CEEEEEEEEEECCcceE-EEEEecCCccccCcEEE-----ECCcCEECCCCEEEEEEEE
Confidence            34666665543 33345557 88999999999999876 4444332100 012433     2344689999999999999


Q ss_pred             EEceeeeEEee
Q 031356          105 DAKVKGMFHGS  115 (161)
Q Consensus       105 ~p~~~G~f~~t  115 (161)
                      .|+..|.|+-+
T Consensus        79 ~~~~~g~f~~~   89 (112)
T 2e6j_A           79 SSIILGNFEEE   89 (112)
T ss_dssp             CCCCCEEEEEE
T ss_pred             ECCCcceEEEE
Confidence            99999999864

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.29  E-value=0.91  Score=32.42  Aligned_cols=83  Identities=12%  Similarity=0.188  Sum_probs=63.5

Q ss_pred             CCceEEEEeeecccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEE
Q 031356           27 DVPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDA  106 (161)
Q Consensus        27 ~~a~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p  106 (161)
                      ..|.|-+.+.+.-....+| ..-+-++.|-|.|+.++. .++..    +..|.+.-     .-..|+||+..+-.+.-.|
T Consensus        22 ~~~~l~~p~~l~fg~~~v~-~~~~~~~~l~N~g~~~~~-f~~~~----~~~F~i~P-----~~g~L~pg~~~~i~V~F~P   90 (122)
T 2ys4_A           22 ARAILDFPDKLNFSTCPVK-YSTQKILLVRNIGNKNAV-FHIKT----CRPFSIEP-----AIGTLNVGESMQLEVEFEP   90 (122)
T ss_dssp             CCCCCCCCSEECCCSEESS-SCEEEEEEEECCSSSCEE-EEEEC----CTTEEEES-----SEEEECTTCEEEEEEEECC
T ss_pred             CCcEECCCCeeecCCeecC-CeEEEEEEEEECCCCCEE-EEEec----CCCeEEEC-----CcCEECCCCEEEEEEEEEc
Confidence            3345555567777888889 899999999999998773 45443    24687632     2279999999999999999


Q ss_pred             ceeeeEEeecEEEEE
Q 031356          107 KVKGMFHGSPALITF  121 (161)
Q Consensus       107 ~~~G~f~~t~A~VtY  121 (161)
                      +..|.|+..- .+.|
T Consensus        91 ~~~g~~~~~l-~v~~  104 (122)
T 2ys4_A           91 QSVGDHSGRL-IVCY  104 (122)
T ss_dssp             SSSBCCCCBC-EEEE
T ss_pred             CCCccEEEEE-EEEE
Confidence            9999998765 5566

>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A

Probab=89.96  E-value=0.72  Score=40.50  Aligned_cols=73  Identities=21%  Similarity=0.281  Sum_probs=52.7

Q ss_pred             eEEEEeeecccccccCceeEEEEEEEEecCCccee-------eEEEec-------CCCCCCCceEecCceeeEEEe-ecC
Q 031356           30 FIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAY-------DVSLTD-------DSWPQDKFDVISGNISQSWER-LDA   94 (161)
Q Consensus        30 ~LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~-------dV~l~D-------~sfp~~~F~iv~G~~s~~~~r-i~p   94 (161)
                      ..+.-|-..-+|-+.| +.++++++|.|.|+++.+       +|.+.+       ..+|.+ . +-.+-++++=+. |+|
T Consensus       248 ~~V~~~v~~A~Y~vpg-R~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~-l-la~~gL~vsd~~pI~P  324 (382)
T 1yew_A          248 PTVSVKVEDATYRVPG-RAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPED-L-LAEDGLSVSDNSPLAP  324 (382)
T ss_dssp             CSEEEEEEEEEEESSC-SEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGG-G-EETTCEEESCCSCBCT
T ss_pred             CceEEEeeccEEecCC-cEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHH-h-hccCCceeCCCCCcCC
Confidence            3566676778899999 999999999999999865       566644       234433 1 233345655555 999


Q ss_pred             CCceEEEEEEE
Q 031356           95 GGILSHSFELD  105 (161)
Q Consensus        95 g~nvsH~vvv~  105 (161)
                      |++.+-++.+.
T Consensus       325 GETr~~~v~a~  335 (382)
T 1yew_A          325 GETRTVDVTAS  335 (382)
T ss_dssp             TCEEEEEEEEE
T ss_pred             CceeEEEEEee
Confidence            99999988877

>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A

Probab=89.84  E-value=2  Score=40.69  Aligned_cols=88  Identities=13%  Similarity=0.112  Sum_probs=69.1

Q ss_pred             CceEEEEeeecccc----------cccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCc
Q 031356           28 VPFIVAHKKASLKR----------LKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGI   97 (161)
Q Consensus        28 ~a~LlvsK~i~~~~----------~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~n   97 (161)
                      .-.+++.|.|....          +++| +++++++++.|-=..+-.|..|+=++     =.+..+ ...+...|+||+.
T Consensus       616 ~~~~~~~~di~l~~P~l~I~v~g~~~v~-~~l~v~vsf~NPL~~~L~~c~~~vEG-----~GL~~~-~~~~~~~v~pg~~  688 (731)
T 1ex0_A          616 RDVLAKQKSTVLTIPEIIIKVRGTQVVG-SDMTVTVQFTNPLKETLRNVWVHLDG-----PGVTRP-MKKMFREIRPNST  688 (731)
T ss_dssp             CCEEEEEEEEECBCCCCEEEEEECCBTT-SCEEEEEEEECCSSSCEEEEEEEEEE-----TTTEEE-EEEEEEEECTTCE
T ss_pred             CeEEEEEEEEEEeCCCEEEEeCCCcccC-CeEEEEEEEECCCCCcccceEEEEEC-----CCCCce-eeEecCccCCCCE
Confidence            33578888775544          5788 99999999999999888888876311     115566 6788899999999


Q ss_pred             eEEEEEEEEceeeeEEeecEEEEEEcCC
Q 031356           98 LSHSFELDAKVKGMFHGSPALITFRIPT  125 (161)
Q Consensus        98 vsH~vvv~p~~~G~f~~t~A~VtY~~~~  125 (161)
                      +++.+.++|++.|.-++   ++++...+
T Consensus       689 ~~~~~~~~P~~~G~r~L---~a~f~s~~  713 (731)
T 1ex0_A          689 VQWEEVCRPWVSGHRKL---IASMSSDS  713 (731)
T ss_dssp             EEEEEEECCSSCEEEEE---EEEEECSS
T ss_pred             EEEEEEEEeccccceEE---EEEEECCc
Confidence            99999999999999887   56666554

>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A

Probab=88.88  E-value=1.2  Score=39.40  Aligned_cols=73  Identities=8%  Similarity=0.087  Sum_probs=53.1

Q ss_pred             EEEEeeecccccccCceeEEEEEEEEecCCccee-------eEEEecCCC------CCCCceEecCceeeEEEeecCCCc
Q 031356           31 IVAHKKASLKRLKSGAERISVSIDIHNQGTSTAY-------DVSLTDDSW------PQDKFDVISGNISQSWERLDAGGI   97 (161)
Q Consensus        31 LlvsK~i~~~~~v~g~~~vtV~y~IyNvG~s~A~-------dV~l~D~sf------p~~~F~iv~G~~s~~~~ri~pg~n   97 (161)
                      -+.-|-..-+|-+.| +.++++++|.|.|+++.+       +|.+.|.+.      .+++...-.|..+-.  -|+||++
T Consensus       283 ~V~~~v~~A~Y~vpg-R~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGET  359 (419)
T 3rfr_A          283 QVTTELNGGVYKVPG-RELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGES  359 (419)
T ss_dssp             CCEEEEEEEEEESSS-SEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCE
T ss_pred             ceEEEEeceEEecCC-cEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcc
Confidence            355565667888999 999999999999999764       677776433      334454445644333  8999999


Q ss_pred             eEEEEEEEE
Q 031356           98 LSHSFELDA  106 (161)
Q Consensus        98 vsH~vvv~p  106 (161)
                      .+-++.+.-
T Consensus       360 rt~~V~a~d  368 (419)
T 3rfr_A          360 KEIVVKIQD  368 (419)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEeeh
Confidence            999988873

>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4

Probab=87.09  E-value=2  Score=40.44  Aligned_cols=87  Identities=13%  Similarity=0.091  Sum_probs=65.7

Q ss_pred             ceEEEEeeeccc----------ccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEE-EeecCCCc
Q 031356           29 PFIVAHKKASLK----------RLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSW-ERLDAGGI   97 (161)
Q Consensus        29 a~LlvsK~i~~~----------~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~-~ri~pg~n   97 (161)
                      -.+++.|.|...          .+++| +++++++++.|-=..+-.|..++=++     =.+..+ ...+. ..|+||+.
T Consensus       572 ~~~~~~~di~l~~P~l~I~v~g~~~v~-~~l~a~vsf~NPL~~~L~~c~~~vEG-----~GL~~~-~~~~~~~~v~Pg~~  644 (695)
T 1g0d_A          572 GPIMTVANIPLSTPELLVQVPGKAVVW-EPLTAYVSFTNPLPVPLKGGVFTLEG-----AGLLSA-TQIHVNGAVAPSGK  644 (695)
T ss_dssp             -EEEEEEEEECBCCCCEEECCSCEETT-CCEEEEEEEECCSSSCEESCEEEEEE-----TTTEEE-EEEECSSEECTTCE
T ss_pred             eEEEEEEEEEEcCCCEEEEeCCCcccC-CeEEEEEEEECCCCCcccceEEEEEC-----CCCCcc-eEEecCCCcCCCCE
Confidence            347777777544          45788 99999999999988888887776311     115555 56777 78999999


Q ss_pred             eEEEEEEEEceeeeEEeecEEEEEEcCC
Q 031356           98 LSHSFELDAKVKGMFHGSPALITFRIPT  125 (161)
Q Consensus        98 vsH~vvv~p~~~G~f~~t~A~VtY~~~~  125 (161)
                      +++.+.++|++.|.-.+   ++++...+
T Consensus       645 ~~~~~~~~P~~~G~r~L---~a~f~s~~  669 (695)
T 1g0d_A          645 VSVKLSFSPMRTGVRKL---LVDFDSDR  669 (695)
T ss_dssp             EEEEEEECCSSCEEEEE---EEEEECSS
T ss_pred             EEEEEEEEcCCccceEE---EEEEECCc
Confidence            99999999999999776   56665554

>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*

Probab=87.01  E-value=1  Score=42.32  Aligned_cols=88  Identities=11%  Similarity=0.212  Sum_probs=68.3

Q ss_pred             ceEEEEeeecccc----------cccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEE-EeecCCCc
Q 031356           29 PFIVAHKKASLKR----------LKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSW-ERLDAGGI   97 (161)
Q Consensus        29 a~LlvsK~i~~~~----------~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~-~ri~pg~n   97 (161)
                      -.+++.|.|....          +++| +++++++++.|-=..+-.|..|+=++     =.+..+....+. ..|+||+.
T Consensus       574 ~~~~~~~di~l~~P~l~I~v~g~~~v~-~~~~v~v~f~NPL~~~L~~c~~~vEG-----~GL~~~~~~~~~~~~v~pg~~  647 (687)
T 2q3z_A          574 SYLLAERDLYLENPEIKIRILGEPKQK-RKLVAEVSLQNPLPVALEGCTFTVEG-----AGLTEEQKTVEIPDPVEAGEE  647 (687)
T ss_dssp             EEEEEEEEEECBCCCCEEEEESCCSSS-SCEEEEEEEECCSSSCBCSEEEEEEC-----TTTCSSCEEEEECSCBCTTCE
T ss_pred             eEEEEEEEEEEeCCCEEEEeCCCcccC-CeEEEEEEEECCCCCcccceEEEEEC-----CCCCCCceEEecCCCcCCCCE
Confidence            3477777776554          5678 99999999999998888888876321     115566677788 78999999


Q ss_pred             eEEEEEEEEceeeeEEeecEEEEEEcCC
Q 031356           98 LSHSFELDAKVKGMFHGSPALITFRIPT  125 (161)
Q Consensus        98 vsH~vvv~p~~~G~f~~t~A~VtY~~~~  125 (161)
                      +++.+.++|++.|.-.+   .+++...+
T Consensus       648 ~~~~~~~~P~~~G~~~L---~a~f~s~~  672 (687)
T 2q3z_A          648 VKVRMDLVPLHMGLHKL---VVNFESDK  672 (687)
T ss_dssp             EEEEEEECCCSSSCEEE---EEEEECSS
T ss_pred             EEEEEEEEeccccceEE---EEEEEcCc
Confidence            99999999999999876   55665544

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=85.92  E-value=1.6  Score=40.10  Aligned_cols=73  Identities=14%  Similarity=0.103  Sum_probs=52.9

Q ss_pred             ccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCc-eeeEEEeecCCCceEEEEEEEEceeeeEEeec
Q 031356           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGN-ISQSWERLDAGGILSHSFELDAKVKGMFHGSP  116 (161)
Q Consensus        39 ~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~-~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~t~  116 (161)
                      ...++.| +.+.+..+|+|..+. ..+|++.=  -+.+.|.+..+. .+.++ .|+||+..+..+.|+|++.|..+++-
T Consensus       161 P~~v~~G-D~~~i~~~V~N~~~~-~~~v~v~l--~~~~~~~~~~~~~~~~~~-~v~a~~~~~v~f~i~~~~~G~~~i~v  234 (767)
T 4fxk_B          161 PMSVRRF-EQLELRPVLYNYLDK-NLTVSVHV--SPVEGLCLAGGGGLAQQV-LVPAGSARPVAFSVVPTAAAAVSLKV  234 (767)
T ss_dssp             CSCEETT-CEEEECCEEEECSSS-CEEEEEEE--CCCTTEECSSSSCCCEEE-EECSSCEEECCEEEEECSCSEEEEEE
T ss_pred             CCeeccC-CEEEEEEEEEECCCC-CEEEEEEE--EecCCeEEecCCceeEEE-EEcCCCeEEEEEEEEECccCcEEEEE
Confidence            4567777 999999999999875 34555542  133456555443 34444 69999999999999999999987754

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=84.73  E-value=1.7  Score=31.66  Aligned_cols=46  Identities=15%  Similarity=0.169  Sum_probs=27.1

Q ss_pred             EEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEEceeeeEEe
Q 031356           55 IHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHG  114 (161)
Q Consensus        55 IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~  114 (161)
                      +.|.++ ...+|.+.+...+...|+         =..|+||++.+++|    .+.|.|.+
T Consensus        72 ~~N~d~-~~H~v~~~~~~~g~~~~~---------s~~l~pG~t~~~tF----~~~G~y~y  117 (132)
T 3c75_A           72 WVNGEV-MPHNVAFKKGIVGEDAFR---------GEMMTKDQAYAITF----NEAGSYDY  117 (132)
T ss_dssp             EEECSS-SCBCCEECTTTSSSSCEE---------CCCBCTTEEEEEEE----CSCEEEEE
T ss_pred             EEECCC-CceEEEEeCCCCCccccc---------ccccCCCCEEEEEc----CCCEEEEE
Confidence            347764 467777765332222232         12578999888776    46676654

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=84.47  E-value=3.3  Score=41.47  Aligned_cols=77  Identities=16%  Similarity=0.095  Sum_probs=55.9

Q ss_pred             ccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEEceeeeEEeecEE
Q 031356           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPAL  118 (161)
Q Consensus        39 ~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~t~A~  118 (161)
                      ...++.| +.+.+..+|+|..+. +.+|++.=.  .++.|++..+.....=-.|++|+..+..+.|+|++.|..+++-.-
T Consensus       776 P~sv~rG-E~~~l~~~V~N~~~~-~~~v~V~l~--~~~~~~~~~~~~~~~~v~l~~~~~~~v~f~v~p~~~G~~~i~v~a  851 (1451)
T 4acq_A          776 PYSVIRG-EAFTLKATVLNYLPK-CIRVSVQLE--ASPAFLAVPVEKEQAPHCICANGRQTVSWAVTPKSLGNVNFTVSA  851 (1451)
T ss_dssp             CSEEESS-SCEEEEEEEEECSSS-CEEEEEEEC--CCTTEEEEESCSCCCCEEECTTEEEEEEEEEEECSCEEEEEEEEE
T ss_pred             CceEecC-CEEEEEEEEEeccCc-cEEEEEEEE--cCCCeEeecCCCCceEEEECCCCeEEEEEEEEECccceEEEEEEE
Confidence            4566777 999999999999874 445555432  234688876532222236999999999999999999998876544


Q ss_pred             E
Q 031356          119 I  119 (161)
Q Consensus       119 V  119 (161)
                      .
T Consensus       852 ~  852 (1451)
T 4acq_A          852 E  852 (1451)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A

Probab=83.71  E-value=2.4  Score=28.70  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=32.3

Q ss_pred             EEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEEceeeeEEe
Q 031356           55 IHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHG  114 (161)
Q Consensus        55 IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~  114 (161)
                      +.|.+. ...+|.+.+..+|.. |+  ++..+..=..+.||++.++++    .+.|.|.+
T Consensus        30 ~~n~~~-~~H~v~~~~~~~p~g-~~--~~~~~~~~~~~~~g~~~~~tf----~~~G~y~y   81 (98)
T 1iuz_A           30 FVNNAG-FPHNIVFDEDAVPAG-VD--ADAISYDDYLNSKGETVVRKL----STPGVYGV   81 (98)
T ss_dssp             EEECSS-CCEEEEECTTSSCTT-CC--HHHHCEEEEECSTTCEEEEEC----CSCEEEEE
T ss_pred             EEECCC-CCEEEEEeCCCCccc-cc--cccccccccccCCCCEEEEEc----CCCEEEEE
Confidence            348864 688999988667743 32  222222223689999888766    46676654

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=82.82  E-value=4.9  Score=40.91  Aligned_cols=74  Identities=12%  Similarity=-0.004  Sum_probs=52.5

Q ss_pred             ccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecC--ceeeEEEeecCCCceEEEEEEEEceeeeEEeec
Q 031356           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISG--NISQSWERLDAGGILSHSFELDAKVKGMFHGSP  116 (161)
Q Consensus        39 ~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G--~~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~t~  116 (161)
                      ...++.| +.+.+..+|||..+.. ..|++.=.  .++.|.+.+.  .-..+--.|+||+..+..+.|+|++.|..+++-
T Consensus       821 Pysv~rG-Eq~~l~v~VfNy~~~~-~~V~V~L~--~s~~~~~~~~~~~~~~q~v~v~a~~~~~v~f~i~p~~~G~~~i~v  896 (1642)
T 3prx_B          821 PYSVVKN-EQVEIRAILHNYVNED-IYVRVELL--YNPAFCSASTKGQRYRQQFPIKALSSRAVPFVIVPLEQGLHDVEI  896 (1642)
T ss_dssp             CSCEETT-CCEEEEEEEEECSSSC-EEEEEEEC--CCTTEEESCCSSSCCEEEEEECSSEEEEEEEEEEECSCEEEEEEE
T ss_pred             CCEEecC-CEEEEEEEEEcCCCCc-EEEEEEEE--cCCCeEeeccCCCcceeEEEECCCCeEEEEEEEEEeecccEEEEE
Confidence            3455667 9999999999999864 44444421  2346766542  111223489999999999999999999988765

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=81.68  E-value=6.8  Score=37.00  Aligned_cols=85  Identities=9%  Similarity=0.029  Sum_probs=57.5

Q ss_pred             eEEEEeeec-----ccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecC---ceeeEEEeecCCCceEEE
Q 031356           30 FIVAHKKAS-----LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISG---NISQSWERLDAGGILSHS  101 (161)
Q Consensus        30 ~LlvsK~i~-----~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G---~~s~~~~ri~pg~nvsH~  101 (161)
                      .+.|.|-+.     ...++.| +.+.+..+|+|..+..+.+|++.=.  .++.|.+.+.   ....++ .|+||+..+..
T Consensus        74 ~~~v~kp~~v~~~LP~~v~~G-D~~~i~~~v~N~~~~~~~~v~v~l~--~~~~~~~~~~~~~~~~~~v-~l~~~~~~~v~  149 (915)
T 2hr0_B           74 EVTVMQDFFIDLRLPYSVVRN-EQVEIRAVLYNYRQNQELKVRVELL--HNPAFCSLATTKRRHQQTV-TIPPKSSLSVP  149 (915)
T ss_dssp             EEEECCSSEEEEECCSEEETT-CCEEEEEEEEECCSSCCEEEEEEEC--CCTTEECSCCSSSCEEEEE-EECTTEEEEEE
T ss_pred             eEEEeccEEEEccCCCEEecC-cEEEEEEEEEcCCCCeeEEEEEEEe--cCCceEeecCCCCcceeEE-EECCCCeEEEE
Confidence            555555432     3456777 9999999999998723455665532  2345655432   122333 78999999999


Q ss_pred             EEEEEceeeeEEeecEE
Q 031356          102 FELDAKVKGMFHGSPAL  118 (161)
Q Consensus       102 vvv~p~~~G~f~~t~A~  118 (161)
                      +.|+|.+.|..+++-.-
T Consensus       150 f~i~~~~~G~~~i~v~a  166 (915)
T 2hr0_B          150 YVIVPLKTGLQEVEVKA  166 (915)
T ss_dssp             EEEEECSCEEEEEEEEE
T ss_pred             EEEEECccceEEEEEEE
Confidence            99999999988775443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	96.93
d1vjja3	99	Transglutaminase, two C-terminal domains {Human (H	96.2
d2q3za3	98	Transglutaminase, two C-terminal domains {Human (H	95.89
d1ex0a3	100	Transglutaminase, two C-terminal domains {Human (H	95.78
d1g0da3	101	Transglutaminase, two C-terminal domains {Red sea	95.27
d3es6b1	118	Prolactin-inducible protein, PIP {Human (Homo sapi	90.42
d1e30a_	153	Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920	80.46

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=96.93  E-value=0.0039  Score=43.26  Aligned_cols=74  Identities=22%  Similarity=0.278  Sum_probs=56.3

Q ss_pred             cccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEEc---eeeeEEeecEE
Q 031356           42 LKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAK---VKGMFHGSPAL  118 (161)
Q Consensus        42 ~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p~---~~G~f~~t~A~  118 (161)
                      +..| +.++++++|.|.|+.++.++.+.-+  -++.|..     +..-..|+||++.+..+.|.+-   ..|.|.+   .
T Consensus        13 v~pG-~~~~~~vtVtN~g~~~~~~~~~~~~--~P~GW~v-----~~~~~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i---~   81 (103)
T d1w8oa1          13 LEPG-QQVTVPVAVTNQSGIAVPKPSLQLD--ASPDWQV-----QGSVEPLMPGRQAKGQVTITVPAGTTPGRYRV---G   81 (103)
T ss_dssp             ECTT-CEEEEEEEEECCSSSCBSSCEEEEE--CCTTSEE-----EEEECCBCTTCEEEEEEEEECCTTCCCEEEEE---E
T ss_pred             eCCC-CeEEEEEEEEeCCCCceeeeeEEEc--CCCCccc-----cCcceeeCCCCcEEEEEEEECCCCCCCceEEE---E
Confidence            3457 9999999999999999998888763  2345654     3444579999999999999964   4599988   4


Q ss_pred             EEEEcCCC
Q 031356          119 ITFRIPTK  126 (161)
Q Consensus       119 VtY~~~~~  126 (161)
                      ++++...+
T Consensus        82 ~~a~~~~~   89 (103)
T d1w8oa1          82 ATLRTSAG   89 (103)
T ss_dssp             EEEEETTE
T ss_pred             EEEEeCCc
Confidence            55555444

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), TGase E3 [TaxId: 9606]

Probab=96.20  E-value=0.007  Score=41.85  Aligned_cols=79  Identities=15%  Similarity=0.136  Sum_probs=62.3

Q ss_pred             ccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEEceeeeEEeecEE
Q 031356           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPAL  118 (161)
Q Consensus        39 ~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~t~A~  118 (161)
                      ...+++| +++++++++.|-=+.+-.|..++=++-     .+..+........|+||+.+++.+.++|++.|.-.+   .
T Consensus         8 ~~~~~v~-~~~~v~vsf~NPL~~~L~~c~f~vEG~-----GL~~~~~~~~~~~v~p~~~~~~~~~~~P~~~G~~~l---~   78 (99)
T d1vjja3           8 LNEARVR-KPVNVQMLFSNPLDEPVRDCVLMVEGS-----GLLLGNLKIDVPTLGPKERSRVRFDILPSRSGTKQL---L   78 (99)
T ss_dssp             CSCCBTT-SCEEEEEEEECCSSSCBCSEEEEEECT-----TTSSSCEEEEECCBCTTCEEEEEEEECCCSCEEEEE---E
T ss_pred             CCCcCcC-CeEEEEEEEECCCCCchhCEEEEEEeC-----CCCCccEEEecCccCCCCEEEEEEEEEcCCcccEEE---E
Confidence            4668899 999999999999888888888775321     133444566788899999999999999999999887   5


Q ss_pred             EEEEcCCC
Q 031356          119 ITFRIPTK  126 (161)
Q Consensus       119 VtY~~~~~  126 (161)
                      +++...+=
T Consensus        79 a~f~s~~l   86 (99)
T d1vjja3          79 ADFSCNKF   86 (99)
T ss_dssp             EEEECSSS
T ss_pred             EEEECCcc
Confidence            66665543

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), tissue isozyme [TaxId: 9606]

Probab=95.89  E-value=0.0088  Score=41.25  Aligned_cols=79  Identities=11%  Similarity=0.158  Sum_probs=60.4

Q ss_pred             ccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEE-EeecCCCceEEEEEEEEceeeeEEeecE
Q 031356           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSW-ERLDAGGILSHSFELDAKVKGMFHGSPA  117 (161)
Q Consensus        39 ~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~-~ri~pg~nvsH~vvv~p~~~G~f~~t~A  117 (161)
                      ...+++| +++++++++.|-=..+-.|..++=++-     .+.++...... +.|+||+.+++.+.++|++.|.-.+   
T Consensus         9 ~g~~~vg-~~~~v~vsF~NPL~~~L~~c~~~vEG~-----GL~~~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~~~L---   79 (98)
T d2q3za3           9 LGEPKQK-RKLVAEVSLQNPLPVALEGCTFTVEGA-----GLTEEQKTVEIPDPVEAGEEVKVRMDLVPLHMGLHKL---   79 (98)
T ss_dssp             ESCCSSS-SCEEEEEEEECCSSSCBCSEEEEEECT-----TTCSSCEEEEECSCBCTTCEEEEEEEECCCSSSCEEE---
T ss_pred             CCCcCcC-CeEEEEEEEECCCCCchhCEEEEEEcC-----CcCcCcEEEeCCCccCCCCEEEEEEEEEcCCcccEEE---
Confidence            5788899 999999999999888888888875320     13333444445 3599999999999999999999887   


Q ss_pred             EEEEEcCCC
Q 031356          118 LITFRIPTK  126 (161)
Q Consensus       118 ~VtY~~~~~  126 (161)
                      .+++...+=
T Consensus        80 ~a~f~s~~l   88 (98)
T d2q3za3          80 VVNFESDKL   88 (98)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEeCCcc
Confidence            566665543

>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Human (Homo sapiens), blood isozyme [TaxId: 9606]

Probab=95.78  E-value=0.022  Score=39.30  Aligned_cols=77  Identities=12%  Similarity=0.086  Sum_probs=61.6

Q ss_pred             ccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEEceeeeEEeecEE
Q 031356           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPAL  118 (161)
Q Consensus        39 ~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~t~A~  118 (161)
                      ...+++| +++++++++.|-=..+=.|+.++=++-  .   +.+ ..+.....|+||+.+++.+.++|++.|.-.+   .
T Consensus        10 ~g~~~v~-~~~~v~v~F~NPL~~~L~nc~~~vEG~--G---L~~-~~~~~~~~v~p~~~~~~~~~~~P~~~G~~~l---~   79 (100)
T d1ex0a3          10 RGTQVVG-SDMTVTVQFTNPLKETLRNVWVHLDGP--G---VTR-PMKKMFREIRPNSTVQWEEVCRPWVSGHRKL---I   79 (100)
T ss_dssp             EECCBTT-SCEEEEEEEECCSSSCEEEEEEEEEET--T---TEE-EEEEEEEEECTTCEEEEEEEECCSSCEEEEE---E
T ss_pred             CCCcccC-CeEEEEEEEECCCCCchhCEEEEEEcC--C---Cce-eeEEecCccCCCCEEEEEEEEecCCcccEEE---E
Confidence            5778899 999999999999988888888875321  1   222 2367889999999999999999999999887   5


Q ss_pred             EEEEcCC
Q 031356          119 ITFRIPT  125 (161)
Q Consensus       119 VtY~~~~  125 (161)
                      +++...+
T Consensus        80 a~f~s~~   86 (100)
T d1ex0a3          80 ASMSSDS   86 (100)
T ss_dssp             EEEECSS
T ss_pred             EEEECcc
Confidence            5665544

>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=95.27  E-value=0.019  Score=39.64  Aligned_cols=78  Identities=12%  Similarity=0.062  Sum_probs=56.9

Q ss_pred             ccccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEEceeeeEEeecEE
Q 031356           39 LKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPAL  118 (161)
Q Consensus        39 ~~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~t~A~  118 (161)
                      ...+++| +++++++++.|-=..+-.|+.+.=++-     .+..+........|+||+.+++.+.++|++.|.-.+   .
T Consensus         9 ~g~~~v~-~~~~v~vsf~NPL~~~L~~c~~~vEG~-----GL~~~~~~~~~~~v~p~~~~~~~~~~~P~~~G~~~L---~   79 (101)
T d1g0da3           9 PGKAVVW-EPLTAYVSFTNPLPVPLKGGVFTLEGA-----GLLSATQIHVNGAVAPSGKVSVKLSFSPMRTGVRKL---L   79 (101)
T ss_dssp             CSCEETT-CCEEEEEEEECCSSSCEESCEEEEEET-----TTEEEEEEECSSEECTTCEEEEEEEECCSSCEEEEE---E
T ss_pred             CCCcCcC-CeEEEEEEEECCCCCeecCEEEEEEcC-----CCCcccEEEecCCcCCCCEEEEEEEEEcCCcccEEE---E
Confidence            5678899 999999999998888877777764210     012212211225799999999999999999999887   5


Q ss_pred             EEEEcCC
Q 031356          119 ITFRIPT  125 (161)
Q Consensus       119 VtY~~~~  125 (161)
                      +++...+
T Consensus        80 a~f~s~~   86 (101)
T d1g0da3          80 VDFDSDR   86 (101)
T ss_dssp             EEEECSS
T ss_pred             EEEeCch
Confidence            6665544

>d3es6b1 b.1.18.23 (B:1-118) Prolactin-inducible protein, PIP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: SVA-like
domain: Prolactin-inducible protein, PIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=0.72  Score=31.64  Aligned_cols=72  Identities=4%  Similarity=-0.026  Sum_probs=48.3

Q ss_pred             cccccCceeEEEEEEEEecCCcceeeEEEecCCCCCCCceEecCceeeEEEeecCCCceEEEEEEEEceeeeEEeecE
Q 031356           40 KRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPA  117 (161)
Q Consensus        40 ~~~v~g~~~vtV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~t~A  117 (161)
                      ..+..| ++++++.+++|.-+.. ..|++.=  -+.+.|+...+. ..+ ..|.+|+..++.+.++|...+.+..++.
T Consensus        16 ~sv~rg-e~~~i~~~V~Nyl~~~-~~v~v~L--~~s~~~~~~~~~-~~~-~cv~~~~~~t~~w~i~~~g~v~itv~a~   87 (118)
T d3es6b1          16 KSVRPN-DEVTAVLAVQTELKEC-MVVKTYL--ISSIPLQGAFNY-KYT-ACLCDDNPKTFYWDFYTNRTVQIAAVVD   87 (118)
T ss_dssp             SEECSS-CCEEEEEEEEECCSSC-EEEEEEE--EESSCCCSGGGC-EEE-EEECSSSCEEEEEEECCSSCEEEEEEEE
T ss_pred             ceEecC-CEEEEEEEEEECccce-EEEEEEE--ecCCCEEccCCC-Ccc-eEECCCCceEEEEEEEecCcEEEEEEEE
Confidence            335667 9999999999999863 4444432  133456555432 333 4899999999999998876555555443

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Rusticyanin
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=80.46  E-value=1.8  Score=30.03  Aligned_cols=64  Identities=14%  Similarity=0.078  Sum_probs=41.2

Q ss_pred             EEEEEEEecCCcceeeEEEecCCCCCCCceEecCc--eeeEEEeecCCCceEEEEEEEEceeeeEEe
Q 031356           50 SVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGN--ISQSWERLDAGGILSHSFELDAKVKGMFHG  114 (161)
Q Consensus        50 tV~y~IyNvG~s~A~dV~l~D~sfp~~~F~iv~G~--~s~~~~ri~pg~nvsH~vvv~p~~~G~f~~  114 (161)
                      +|++++.|.+++...+..|...+++-..+......  ....-..+.||++.+..+.+ |...|.|-+
T Consensus        69 ~V~i~v~N~~~~~~H~~~ih~~g~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~f~~-~~~pGty~Y  134 (153)
T d1e30a_          69 TVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTNFTW-HPTAGTYYY  134 (153)
T ss_dssp             EEEEEEEECCTTCCCCCEEESCCSSCCSSCCCCSEEEEBCCCCCCBTTEEEEEEEEE-CCCSEEEEE
T ss_pred             EEEEEEEeCCCCCcccEEEEcCCCCccccccccccCCCccceeeecCCCEEEEEEEe-CCCCeEEEE
Confidence            56688899887777788887655554444332222  23344568899988887764 455676654