Citrus Sinensis ID: 031374

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQSDQ
Secondary Structure (PSIPRED)
cEEEEEEEccccccccccccccccccccHHHHHHHccEEEEEcccccccHHHHHHHHHHccccEEEEEEEcccccccHHHHHHcHHHHccccccEEEEEEEccEEEEEEEcccEEEEEEEEcccEEEccccccEEEEccccccEEEEEEEccccEEcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccccccccccccccccccccHHHHHHcccEEEEEccccccccHHHHHHHHHccccccEEEEEcHHHcccHHHHHHHHHHHHHcccHHHEEEEccccEEEEccccccEEEEEEEcccEEEEccccEEEEEcccccHEEEHHHEcccccccccc
Coil and Loop (DISEMBL)
MVLEAwfmdessqdqrlphhlnpkqfvsLDQLAELGVLYwrlnpknyendEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLegsgyfdvrdeSDQWIRIWIKAgdlivlpagiyhrftldtsnYVKVMQILSYgvqrqsdq
Flexible Loop (DISEMBL)
MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRlnpknyendeELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSygvqrqsdq
Low Complexity Region (SEG)
MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQSDQ
Disordered region (IsUnstruct)
***********************KQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV******
Disordered Region (DISOPRED)
MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY********
Disordered Region (DISEMBL)
MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY********
Disordered Region (DISPRO)
MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQSDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
D7T737	188	1,2-dihydroxy-3-keto-5-me	no	no	0.931	0.792	0.798	7e-71
Q8H185	187	1,2-dihydroxy-3-keto-5-me	yes	no	0.937	0.802	0.8	1e-70
F6HDT7	199	1,2-dihydroxy-3-keto-5-me	no	no	0.931	0.748	0.711	1e-64
Q10RE5	198	1,2-dihydroxy-3-keto-5-me	yes	no	0.931	0.752	0.684	3e-62
A2XCT8	198	1,2-dihydroxy-3-keto-5-me	N/A	no	0.931	0.752	0.684	3e-62
A1L4T4	199	1,2-dihydroxy-3-keto-5-me	no	no	0.931	0.748	0.677	2e-61
A2Z7C4	199	1,2-dihydroxy-3-keto-5-me	N/A	no	0.931	0.748	0.677	2e-61
Q8W108	199	1,2-dihydroxy-3-keto-5-me	no	no	0.931	0.748	0.657	1e-60
C5X1F5	180	1,2-dihydroxy-3-keto-5-me	N/A	no	0.893	0.794	0.699	1e-60
O48707	199	1,2-dihydroxy-3-keto-5-me	no	no	0.95	0.763	0.664	2e-60

>sp|D7T737|MTND1_VITVI 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Vitis vinifera GN=VIT_05s0020g04070 PE=3 SV=1

 Score =  265 bits (678), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 119/149 (79%), Positives = 139/149 (93%)

Query: 2   VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
           + +AWFM+E+ +DQRLPHH NPKQFVSLD LA+LGVLYW+LNPK+YEND+EL++IRE+RG
Sbjct: 3   IEQAWFMEENDEDQRLPHHRNPKQFVSLDHLADLGVLYWKLNPKDYENDQELKEIRESRG 62

Query: 62  YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
           Y+YMDLLDLCPE+V NYEEKLKNFYTEHIH DEEIRYCLEGSGYFDVRD+ D+WIRIWIK
Sbjct: 63  YNYMDLLDLCPERVENYEEKLKNFYTEHIHGDEEIRYCLEGSGYFDVRDKEDRWIRIWIK 122

Query: 122 AGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
            GD+IVLPAGIYHRFTLDT NYVK+M++ 
Sbjct: 123 EGDMIVLPAGIYHRFTLDTGNYVKLMRLF 151

Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).
Vitis vinifera (taxid: 29760)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 5EC: 4

>sp|Q8H185|MTND4_ARATH 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Arabidopsis thaliana GN=ARD4 PE=2 SV=1

 Score =  265 bits (676), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 120/150 (80%), Positives = 136/150 (90%)

Query: 1   MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREAR 60
           M LEAWFMD+S++DQRLPHH NPK+ VSLD LAELGVLYW+LNP+NYEND EL KIRE R
Sbjct: 1   MALEAWFMDDSNEDQRLPHHRNPKELVSLDYLAELGVLYWKLNPENYENDSELSKIREDR 60

Query: 61  GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWI 120
           GY YMDLLDLCPEKV+NYEEKLKNF+TEHIH DEEIRYCL GSGYFDVRD+ D+WIRIW+
Sbjct: 61  GYDYMDLLDLCPEKVSNYEEKLKNFFTEHIHKDEEIRYCLAGSGYFDVRDKDDRWIRIWM 120

Query: 121 KAGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
           + GDLIVLPAGIYHRFTLD SNY+K+M++ 
Sbjct: 121 QPGDLIVLPAGIYHRFTLDASNYIKLMRLF 150

Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 5

EC: 4

>sp|F6HDT7|MTND2_VITVI 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Vitis vinifera GN=VIT_05s0020g04080 PE=3 SV=1

 Score =  244 bits (624), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 106/149 (71%), Positives = 132/149 (88%)

Query: 2   VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
           VL+AW+MD+S +DQRLPHH +PK+FVSLDQLA+LGVL WRL+  NYE DEEL+KIREARG
Sbjct: 11  VLQAWYMDDSDEDQRLPHHRDPKEFVSLDQLAKLGVLSWRLDADNYETDEELKKIREARG 70

Query: 62  YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
           YSYMD  ++CPEK+ NYEEK+KNF+ EH+H DEEIRYC+ GSGYFDVRD++D WIR+W+K
Sbjct: 71  YSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDQNDSWIRVWLK 130

Query: 122 AGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
            G +IVLPAGIYHRFTLD++NY+K M++ 
Sbjct: 131 KGGMIVLPAGIYHRFTLDSNNYIKAMRLF 159

Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).

Vitis vinifera (taxid: 29760)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 5

EC: 4

>sp|Q10RE5|MTND2_ORYSJ 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. japonica GN=ARD2 PE=2 SV=1

 Score =  237 bits (604), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 129/149 (86%)

Query: 2   VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
           V+EAW+MD+S +DQRLPHH  PK+F+ L +L+ELG+L WRLN  ++ENDE L+KIREARG
Sbjct: 12  VIEAWYMDDSEEDQRLPHHREPKEFIPLSKLSELGILSWRLNADDWENDENLKKIREARG 71

Query: 62  YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
           YSYMD+ D+CPEK+ NYE KLKNF+ EH+H DEEIRYCLEGSGYFDVRD++DQWIR+ +K
Sbjct: 72  YSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRVAVK 131

Query: 122 AGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
            G +IVLPAG+YHRFTLD+ NY+K M++ 
Sbjct: 132 KGGMIVLPAGMYHRFTLDSDNYIKAMRLF 160

Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 5

EC: 4

>sp|A2XCT8|MTND2_ORYSI 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. indica GN=ARD2 PE=2 SV=2

 Score =  237 bits (604), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 129/149 (86%)

Query: 2   VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
           V+EAW+MD+S +DQRLPHH  PK+F+ L +L+ELG+L WRLN  ++ENDE L+KIREARG
Sbjct: 12  VIEAWYMDDSEEDQRLPHHREPKEFIPLSKLSELGILSWRLNADDWENDENLKKIREARG 71

Query: 62  YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
           YSYMD+ D+CPEK+ NYE KLKNF+ EH+H DEEIRYCLEGSGYFDVRD++DQWIR+ +K
Sbjct: 72  YSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRVAVK 131

Query: 122 AGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
            G +IVLPAG+YHRFTLD+ NY+K M++ 
Sbjct: 132 KGGMIVLPAGMYHRFTLDSDNYIKAMRLF 160

Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 5

EC: 4

>sp|A1L4T4|MTND1_ORYSJ 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Oryza sativa subsp. japonica GN=ARD1 PE=2 SV=1

 Score =  234 bits (597), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 101/149 (67%), Positives = 129/149 (86%)

Query: 2   VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
           V+EAW+MD+S +DQRLPHH  PK+F+ +D+L ELGV+ WRLNP N+EN E L++IREARG
Sbjct: 12  VIEAWYMDDSEEDQRLPHHREPKEFIHVDKLTELGVISWRLNPDNWENCENLKRIREARG 71

Query: 62  YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
           YSY+D+ D+CPEK+ NYE K+K+F+ EH+H DEEIRYCLEGSGYFDVRD++DQWIRI +K
Sbjct: 72  YSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRIALK 131

Query: 122 AGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
            G +IVLPAG+YHRFTLDT NY+K M++ 
Sbjct: 132 KGGMIVLPAGMYHRFTLDTDNYIKAMRLF 160

Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 5

EC: 4

>sp|A2Z7C4|MTND1_ORYSI 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Oryza sativa subsp. indica GN=ARD1 PE=1 SV=2

 Score =  234 bits (597), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 101/149 (67%), Positives = 129/149 (86%)

Query: 2   VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
           V+EAW+MD+S +DQRLPHH  PK+F+ +D+L ELGV+ WRLNP N+EN E L++IREARG
Sbjct: 12  VIEAWYMDDSEEDQRLPHHREPKEFIHVDKLTELGVISWRLNPDNWENCENLKRIREARG 71

Query: 62  YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
           YSY+D+ D+CPEK+ NYE K+K+F+ EH+H DEEIRYCLEGSGYFDVRD++DQWIRI +K
Sbjct: 72  YSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRIALK 131

Query: 122 AGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
            G +IVLPAG+YHRFTLDT NY+K M++ 
Sbjct: 132 KGGMIVLPAGMYHRFTLDTDNYIKAMRLF 160

Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). May play a role in recycling S-adenosylmethionine (SAM) for ethylene biosynthesis, which is competing with polyamines biosynthesis pathway for SAM substrate.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 5

EC: 4

>sp|Q8W108|MTND3_ARATH 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Arabidopsis thaliana GN=ARD3 PE=2 SV=1

 Score =  231 bits (590), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 129/149 (86%)

Query: 2   VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
           V++AW+MD+S +DQRLPHH +PK+F+SLD+LAELGVL WRL+  NYE DE+L+KIRE+RG
Sbjct: 12  VIQAWYMDDSEEDQRLPHHKDPKEFLSLDKLAELGVLSWRLDADNYETDEDLKKIRESRG 71

Query: 62  YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
           YSYMD  ++CPEK+ NYE K+K+F+ EH+H DEEIRYC+ GSGYFDVRD ++ WIR+W+K
Sbjct: 72  YSYMDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAGSGYFDVRDRNEAWIRVWVK 131

Query: 122 AGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
            G +IVLPAGIYHRFT+D+ NY+K M++ 
Sbjct: 132 KGGMIVLPAGIYHRFTVDSDNYIKAMRLF 160

Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 5

EC: 4

>sp|C5X1F5|MTND1_SORBI 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Sorghum bicolor GN=Sb01g021500 PE=3 SV=2

 Score =  231 bits (590), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 125/143 (87%)

Query: 8   MDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDL 67
           MD+S +DQRLPHH +PK+F+ LD+L+ELG++ WRLNP N+ENDE L+KIREARGYSYMD+
Sbjct: 1   MDDSEEDQRLPHHRDPKEFIPLDKLSELGIISWRLNPDNWENDENLKKIREARGYSYMDI 60

Query: 68  LDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIV 127
            D+CPEK+ NYE K+KNF+ EH+H DEEIRYCLEGSGYFDVRDE+DQWIR+ +K G +IV
Sbjct: 61  CDVCPEKLPNYEIKIKNFFEEHLHTDEEIRYCLEGSGYFDVRDENDQWIRVAVKKGGMIV 120

Query: 128 LPAGIYHRFTLDTSNYVKVMQIL 150
           LPAG+YHRFTLD  NY+K M++ 
Sbjct: 121 LPAGMYHRFTLDNENYIKAMRLF 143

Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).

Sorghum bicolor (taxid: 4558)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 5

EC: 4

>sp|O48707|MTND1_ARATH 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Arabidopsis thaliana GN=ARD1 PE=2 SV=1

 Score =  231 bits (588), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 128/152 (84%)

Query: 2   VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
           V++AW++D   +DQ+LPHH +PK+FVSLD+LAELGVL WRL+  NYE DEEL++IRE+RG
Sbjct: 12  VIQAWYLDNKEEDQKLPHHKDPKEFVSLDKLAELGVLCWRLDADNYETDEELKRIRESRG 71

Query: 62  YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
           YSYMDL ++CPEK+ NYEEK+K F+ EH+H DEEIRYCL GSGYFDVRD +D WIR+W+K
Sbjct: 72  YSYMDLCEVCPEKLPNYEEKVKMFFEEHLHIDEEIRYCLAGSGYFDVRDLNDIWIRVWVK 131

Query: 122 AGDLIVLPAGIYHRFTLDTSNYVKVMQILSYG 153
            G LIV PAGIYHRFT+D+ NY+K M++   G
Sbjct: 132 KGGLIVFPAGIYHRFTVDSDNYMKAMRLFVGG 163

Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 5

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
388509288	187	unknown [Lotus japonicus]	0.937	0.802	0.82	4e-71
359477561	373	PREDICTED: 1,2-dihydroxy-3-keto-5-methyl	0.937	0.402	0.806	1e-70
297791489	187	ATARD4 [Arabidopsis lyrata subsp. lyrata	0.937	0.802	0.806	6e-70
224099839	189	predicted protein [Populus trichocarpa]	0.937	0.793	0.807	3e-69
363805407	188	RecName: Full=1,2-dihydroxy-3-keto-5-met	0.931	0.792	0.798	4e-69
18422379	187	1,2-dihydroxy-3-keto-5-methylthiopentene	0.937	0.802	0.8	7e-69
21554849	187	submergence induced protein 2A [Arabidop	0.937	0.802	0.8	2e-68
255552059	187	acireductone dioxygenase, putative [Rici	0.937	0.802	0.806	2e-68
388513165	187	unknown [Medicago truncatula]	0.937	0.802	0.793	8e-68
10177955	185	unnamed protein product [Arabidopsis tha	0.925	0.8	0.790	2e-67

>gi|388509288|gb|AFK42710.1| unknown [Lotus japonicus]

 Score =  271 bits (694), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 123/150 (82%), Positives = 140/150 (93%)

Query: 1   MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREAR 60
           M +EAWFMD+S++D RLPHH  P+QF SLDQLAELGVLYW+LNP +YEND+EL+KIRE R
Sbjct: 1   MAIEAWFMDDSNEDPRLPHHCKPQQFASLDQLAELGVLYWKLNPTDYENDQELKKIREDR 60

Query: 61  GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWI 120
           GY+YMDLLDLCPEKV NYEEKLKNFYTEHIH DEEIRYCLEGSGYFDVRD++D+WIRIWI
Sbjct: 61  GYNYMDLLDLCPEKVENYEEKLKNFYTEHIHQDEEIRYCLEGSGYFDVRDKADRWIRIWI 120

Query: 121 KAGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
           KAGDLI+LPAGIYHRFTLDTSNYVK+M++ 
Sbjct: 121 KAGDLIILPAGIYHRFTLDTSNYVKLMRLF 150

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477561|ref|XP_003631995.1| PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Vitis vinifera]

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 121/150 (80%), Positives = 140/150 (93%)

Query: 1   MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREAR 60
           M +EAWFM+E+ +DQRLPHH NPKQFVSLD LA+LGVLYW+LNPK+YEND+EL++IRE+R
Sbjct: 1   MAIEAWFMEENDEDQRLPHHRNPKQFVSLDHLADLGVLYWKLNPKDYENDQELKEIRESR 60

Query: 61  GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWI 120
           GY+YMDLLDLCPE+V NYEEKLKNFYTEHIH DEEIRYCLEGSGYFDVRD+ D+WIRIWI
Sbjct: 61  GYNYMDLLDLCPERVENYEEKLKNFYTEHIHGDEEIRYCLEGSGYFDVRDKEDRWIRIWI 120

Query: 121 KAGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
           K GD+IVLPAGIYHRFTLDT NYVK+M++ 
Sbjct: 121 KEGDMIVLPAGIYHRFTLDTGNYVKLMRLF 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791489|ref|XP_002863629.1| ATARD4 [Arabidopsis lyrata subsp. lyrata] gi|297309464|gb|EFH39888.1| ATARD4 [Arabidopsis lyrata subsp. lyrata]

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 121/150 (80%), Positives = 138/150 (92%)

Query: 1   MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREAR 60
           M LEAWFMD+S++DQRLPHHLNPK+ VSLD LAELGVLYW+LNP+NYEND EL KIRE R
Sbjct: 1   MALEAWFMDDSNEDQRLPHHLNPKELVSLDYLAELGVLYWKLNPENYENDPELSKIREER 60

Query: 61  GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWI 120
           GY YMDLLDLCPEKV+NYEEKLKNF+TEHIH DEEIRYCL GSGYFDVRD+ D+WIRIW+
Sbjct: 61  GYDYMDLLDLCPEKVSNYEEKLKNFFTEHIHKDEEIRYCLAGSGYFDVRDKDDRWIRIWM 120

Query: 121 KAGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
           + GDLI+LPAGIYHRFTLDTSNY+K+M++ 
Sbjct: 121 QPGDLIILPAGIYHRFTLDTSNYIKLMRLF 150

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099839|ref|XP_002311640.1| predicted protein [Populus trichocarpa] gi|222851460|gb|EEE89007.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 122/151 (80%), Positives = 139/151 (92%), Gaps = 1/151 (0%)

Query: 1   MVLEAWFMDESS-QDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREA 59
           M +EAWFMDE+S +DQRLP H NPK+FVSLD LAELGVLYWRLNP NYENDEEL+KIRE 
Sbjct: 1   MAIEAWFMDETSGEDQRLPRHCNPKEFVSLDYLAELGVLYWRLNPANYENDEELKKIRED 60

Query: 60  RGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIW 119
           RGY+YMDLLD+CPEKV +++EKLKNFYTEHIHADEEIRYCLEGS YFDVRD+ D+WIRIW
Sbjct: 61  RGYNYMDLLDICPEKVADFKEKLKNFYTEHIHADEEIRYCLEGSAYFDVRDKDDRWIRIW 120

Query: 120 IKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
           IKAGDLI+LPAGIYHRFTLDT +YVK+M++ 
Sbjct: 121 IKAGDLIILPAGIYHRFTLDTGDYVKLMRLF 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363805407|sp|D7T737.1|MTND1_VITVI RecName: Full=1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1; AltName: Full=Acireductone dioxygenase (Fe(2+)-requiring) 1; Short=ARD 1; Short=Fe-ARD 1 gi|297737107|emb|CBI26308.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 119/149 (79%), Positives = 139/149 (93%)

Query: 2   VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
           + +AWFM+E+ +DQRLPHH NPKQFVSLD LA+LGVLYW+LNPK+YEND+EL++IRE+RG
Sbjct: 3   IEQAWFMEENDEDQRLPHHRNPKQFVSLDHLADLGVLYWKLNPKDYENDQELKEIRESRG 62

Query: 62  YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
           Y+YMDLLDLCPE+V NYEEKLKNFYTEHIH DEEIRYCLEGSGYFDVRD+ D+WIRIWIK
Sbjct: 63  YNYMDLLDLCPERVENYEEKLKNFYTEHIHGDEEIRYCLEGSGYFDVRDKEDRWIRIWIK 122

Query: 122 AGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
            GD+IVLPAGIYHRFTLDT NYVK+M++ 
Sbjct: 123 EGDMIVLPAGIYHRFTLDTGNYVKLMRLF 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422379|ref|NP_568630.1| 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 [Arabidopsis thaliana] gi|75244604|sp|Q8H185.1|MTND4_ARATH RecName: Full=1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4; AltName: Full=Acireductone dioxygenase (Fe(2+)-requiring) 4; Short=ARD 4; Short=Fe-ARD 4 gi|23306364|gb|AAN17409.1| putative protein [Arabidopsis thaliana] gi|30102912|gb|AAP21374.1| At5g43850 [Arabidopsis thaliana] gi|332007634|gb|AED95017.1| 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 [Arabidopsis thaliana]

 Score =  265 bits (676), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 120/150 (80%), Positives = 136/150 (90%)

Query: 1   MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREAR 60
           M LEAWFMD+S++DQRLPHH NPK+ VSLD LAELGVLYW+LNP+NYEND EL KIRE R
Sbjct: 1   MALEAWFMDDSNEDQRLPHHRNPKELVSLDYLAELGVLYWKLNPENYENDSELSKIREDR 60

Query: 61  GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWI 120
           GY YMDLLDLCPEKV+NYEEKLKNF+TEHIH DEEIRYCL GSGYFDVRD+ D+WIRIW+
Sbjct: 61  GYDYMDLLDLCPEKVSNYEEKLKNFFTEHIHKDEEIRYCLAGSGYFDVRDKDDRWIRIWM 120

Query: 121 KAGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
           + GDLIVLPAGIYHRFTLD SNY+K+M++ 
Sbjct: 121 QPGDLIVLPAGIYHRFTLDASNYIKLMRLF 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554849|gb|AAM63708.1| submergence induced protein 2A [Arabidopsis thaliana]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/150 (80%), Positives = 136/150 (90%)

Query: 1   MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREAR 60
           M LEAWFMD+S++DQRLPHH NPK+ V LD LAELGVLYW+LNP+NYEND EL KIRE R
Sbjct: 1   MALEAWFMDDSNEDQRLPHHRNPKELVPLDYLAELGVLYWKLNPENYENDSELIKIREDR 60

Query: 61  GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWI 120
           GY YMDLLDLCPEKV+NYEEKLKNF+TEHIH DEEIRYCL GSGYFDVRD+ D+WIRIW+
Sbjct: 61  GYDYMDLLDLCPEKVSNYEEKLKNFFTEHIHKDEEIRYCLAGSGYFDVRDKDDRWIRIWM 120

Query: 121 KAGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
           + GDLIVLPAGIYHRFTLDTSNY+K+M++ 
Sbjct: 121 QPGDLIVLPAGIYHRFTLDTSNYIKLMRLF 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552059|ref|XP_002517074.1| acireductone dioxygenase, putative [Ricinus communis] gi|223543709|gb|EEF45237.1| acireductone dioxygenase, putative [Ricinus communis]

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/150 (80%), Positives = 137/150 (91%)

Query: 1   MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREAR 60
           M +EAWFMDES+++QRLPH  N + FV LD LA+LGVLYW LNP++YE DEEL+KIREAR
Sbjct: 1   MAMEAWFMDESNEEQRLPHRSNQEDFVPLDHLADLGVLYWHLNPEDYEKDEELKKIREAR 60

Query: 61  GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWI 120
           GY+YMDLLDLCPEKV NYEEKLKNFYTEHIHADEEIRYCL GSGYFDVRD+ D+WIRIWI
Sbjct: 61  GYNYMDLLDLCPEKVANYEEKLKNFYTEHIHADEEIRYCLGGSGYFDVRDKDDRWIRIWI 120

Query: 121 KAGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
           KAGDLIVLPAGIYHRFTLDT+NYVK+M++ 
Sbjct: 121 KAGDLIVLPAGIYHRFTLDTNNYVKLMRLF 150

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513165|gb|AFK44644.1| unknown [Medicago truncatula]

 Score =  261 bits (666), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 119/150 (79%), Positives = 137/150 (91%)

Query: 1   MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREAR 60
           M +EAWFMD +++D RLPHH  P +FV LDQLAELGVLYW+LNP + END+EL+ IREAR
Sbjct: 1   MAIEAWFMDNNNEDPRLPHHGYPNEFVFLDQLAELGVLYWKLNPNDCENDQELKNIREAR 60

Query: 61  GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWI 120
           GY+YMDLLDLCPEKV NYEEKLKNFYTEHIH DEEIRYCLEGSGYFDVRD++D+WIRIWI
Sbjct: 61  GYNYMDLLDLCPEKVENYEEKLKNFYTEHIHEDEEIRYCLEGSGYFDVRDKNDRWIRIWI 120

Query: 121 KAGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
           KAGDLI+LPAGIYHRFTLDT+NYVK+M++ 
Sbjct: 121 KAGDLIILPAGIYHRFTLDTNNYVKLMRLF 150

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177955|dbj|BAB11314.1| unnamed protein product [Arabidopsis thaliana]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 117/148 (79%), Positives = 135/148 (91%)

Query: 3   LEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGY 62
           ++AWFMD+S++DQRLPHH NPK+ VSLD LAELGVLYW+LNP+NYEND EL KIRE RGY
Sbjct: 1   MQAWFMDDSNEDQRLPHHRNPKELVSLDYLAELGVLYWKLNPENYENDSELSKIREDRGY 60

Query: 63  SYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKA 122
            YMDLLDLCPEKV+NYEEKLKNF+TEHIH DEEIRYCL GSGYFDVRD+ D+WIRIW++ 
Sbjct: 61  DYMDLLDLCPEKVSNYEEKLKNFFTEHIHKDEEIRYCLAGSGYFDVRDKDDRWIRIWMQP 120

Query: 123 GDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
           GDLIVLPAGIYHRFTLD SNY+K+M++ 
Sbjct: 121 GDLIVLPAGIYHRFTLDASNYIKLMRLF 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:2170842	187	ARD4 [Arabidopsis thaliana (ta	0.931	0.796	0.805	1.5e-67
TAIR|locus:2066321	199	ARD3 "acireductone dioxygenase	0.95	0.763	0.664	1.1e-57
TAIR|locus:505006465	192	ARD1 "acireductone dioxygenase	0.925	0.770	0.655	1.2e-56
UNIPROTKB|I3LEI8	179	ADI1 "Uncharacterized protein"	0.925	0.826	0.621	1.5e-51
ZFIN|ZDB-GENE-030131-2799	204	adi1 "acireductone dioxygenase	0.925	0.725	0.630	2.2e-50
MGI|MGI:2144929	179	Adi1 "acireductone dioxygenase	0.925	0.826	0.608	1.5e-49
RGD|727828	179	Adi1 "acireductone dioxygenase	0.925	0.826	0.594	2.5e-49
UNIPROTKB|Q3ZBL1	179	ADI1 "1,2-dihydroxy-3-keto-5-m	0.925	0.826	0.594	6.7e-49
UNIPROTKB|Q5ZL43	180	ADI1 "1,2-dihydroxy-3-keto-5-m	0.925	0.822	0.608	8.5e-49
UNIPROTKB|Q9BV57	179	ADI1 "1,2-dihydroxy-3-keto-5-m	0.925	0.826	0.574	2.3e-48

TAIR|locus:2170842 ARD4 [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 120/149 (80%), Positives = 136/149 (91%)

Query:     1 MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREAR 60
             M LEAWFMD+S++DQRLPHH NPK+ VSLD LAELGVLYW+LNP+NYEND EL KIRE R
Sbjct:     1 MALEAWFMDDSNEDQRLPHHRNPKELVSLDYLAELGVLYWKLNPENYENDSELSKIREDR 60

Query:    61 GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWI 120
             GY YMDLLDLCPEKV+NYEEKLKNF+TEHIH DEEIRYCL GSGYFDVRD+ D+WIRIW+
Sbjct:    61 GYDYMDLLDLCPEKVSNYEEKLKNFFTEHIHKDEEIRYCLAGSGYFDVRDKDDRWIRIWM 120

Query:   121 KAGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
             + GDLIVLPAGIYHRFTLD SNY+K+M++
Sbjct:   121 QPGDLIVLPAGIYHRFTLDASNYIKLMRL 149

GO:0005886 "plasma membrane" evidence=ISM

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

GO:0046872 "metal ion binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2066321 ARD3 "acireductone dioxygenase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 101/152 (66%), Positives = 128/152 (84%)

Query:     2 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
             V++AW++D   +DQ+LPHH +PK+FVSLD+LAELGVL WRL+  NYE DEEL++IRE+RG
Sbjct:    12 VIQAWYLDNKEEDQKLPHHKDPKEFVSLDKLAELGVLCWRLDADNYETDEELKRIRESRG 71

Query:    62 YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
             YSYMDL ++CPEK+ NYEEK+K F+ EH+H DEEIRYCL GSGYFDVRD +D WIR+W+K
Sbjct:    72 YSYMDLCEVCPEKLPNYEEKVKMFFEEHLHIDEEIRYCLAGSGYFDVRDLNDIWIRVWVK 131

Query:   122 AGDLIVLPAGIYHRFTLDTSNYVKVMQILSYG 153
              G LIV PAGIYHRFT+D+ NY+K M++   G
Sbjct:   132 KGGLIVFPAGIYHRFTVDSDNYMKAMRLFVGG 163

GO:0005886 "plasma membrane" evidence=ISM

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

GO:0046872 "metal ion binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010297 "heteropolysaccharide binding" evidence=NAS

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:505006465 ARD1 "acireductone dioxygenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 97/148 (65%), Positives = 128/148 (86%)

Query:     2 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
             V++AW+MD+S +DQRLPHH +PK+FVSLD+LAELGVL WRL+  NYE DE+L+KIRE+RG
Sbjct:    12 VIQAWYMDDSEEDQRLPHHKDPKEFVSLDKLAELGVLSWRLDADNYETDEDLKKIRESRG 71

Query:    62 YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
             YSYMD  ++CPEK+ NYE K+K+F+ EH+H DEEIRYC+ G+GYFDVRD ++ WIR+ +K
Sbjct:    72 YSYMDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAGTGYFDVRDRNEAWIRVLVK 131

Query:   122 AGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
              G +IVLPAGIYHRFT+D+ NY+K M++
Sbjct:   132 KGGMIVLPAGIYHRFTVDSDNYIKAMRL 159

GO:0005886 "plasma membrane" evidence=ISM

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

GO:0046872 "metal ion binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0005506 "iron ion binding" evidence=IDA

GO:0051302 "regulation of cell division" evidence=IMP

UNIPROTKB|I3LEI8 ADI1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 92/148 (62%), Positives = 118/148 (79%)

Query:     2 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
             +++AW+MDES+ D RLPH   P + V LDQL  LGVLYW+L+   YEND EL+KIR  R 
Sbjct:     1 MVQAWYMDESADDPRLPHRTEPARPVGLDQLRRLGVLYWKLDADKYENDPELEKIRNERN 60

Query:    62 YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
             YS+MD++ +C +K+ NYEEK+K FY EH+H D+EIRY L+GSGYFDVRD+ D+WIRI+++
Sbjct:    61 YSWMDIITICRDKLPNYEEKIKTFYEEHLHLDDEIRYILDGSGYFDVRDQDDRWIRIFME 120

Query:   122 AGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
              GDLI LPAGIYHRFTLD  NYVK M++
Sbjct:   121 KGDLITLPAGIYHRFTLDEQNYVKAMRL 148

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

ZFIN|ZDB-GENE-030131-2799 adi1 "acireductone dioxygenase 1" [Danio rerio (taxid:7955)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 94/149 (63%), Positives = 117/149 (78%)

Query:     2 VLEAWFMDESS-QDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREAR 60
             V EAW+MDE S +DQRLPH L+P Q VS+ QL  +GV +W+LN   YEND ELQKIRE +
Sbjct:     3 VFEAWYMDEESGEDQRLPHKLSPNQPVSVQQLEHIGVFHWKLNADIYENDPELQKIREEK 62

Query:    61 GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWI 120
             GYS+MD++ + P+K+ +Y+ KLK FY EH+H D+EIRY LEGS YFDVRDE D+WIRI +
Sbjct:    63 GYSFMDIITIHPDKLPDYQNKLKMFYEEHLHLDDEIRYILEGSSYFDVRDEGDRWIRIAV 122

Query:   121 KAGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
               GDLI LPAGIYHRFT+D SNY K M++
Sbjct:   123 SKGDLITLPAGIYHRFTVDESNYTKAMRL 151

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

MGI|MGI:2144929 Adi1 "acireductone dioxygenase 1" [Mus musculus (taxid:10090)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 90/148 (60%), Positives = 117/148 (79%)

Query:     2 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
             +++AW+MDES+ D R PH   P + VSL+QL  LGVLYW+L+   YEND EL+KIR+ R 
Sbjct:     1 MVQAWYMDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKMRN 60

Query:    62 YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
             YS+MD++ +C + + NYEEK+K F+ EH+H DEEIRY LEGSGYFDVRD+ D+WIRI ++
Sbjct:    61 YSWMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISME 120

Query:   122 AGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
              GD+I LPAGIYHRFTLD  NYVK M++
Sbjct:   121 KGDMITLPAGIYHRFTLDEKNYVKAMRL 148

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

GO:0016020 "membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISO

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|727828 Adi1 "acireductone dioxygenase 1" [Rattus norvegicus (taxid:10116)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 88/148 (59%), Positives = 117/148 (79%)

Query:     2 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
             +++AW+MDES+ D R+PH   P + V L+QL  LGVLYW+L+   YEND EL++IR+ R 
Sbjct:     1 MVQAWYMDESTADPRMPHRAQPDRPVGLEQLRTLGVLYWKLDADKYENDPELEQIRKTRN 60

Query:    62 YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
             YS+MD++ +C + + NYEEK+K F+ EH+H DEEIRY LEGSGYFDVRD+ D+WIRI ++
Sbjct:    61 YSWMDIITICKDSLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISME 120

Query:   122 AGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
              GD+I LPAGIYHRFTLD  NYVK M++
Sbjct:   121 KGDMITLPAGIYHRFTLDEKNYVKAMRL 148

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

GO:0016491 "oxidoreductase activity" evidence=ISO;ISS

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IEA;ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q3ZBL1 ADI1 "1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase" [Bos taurus (taxid:9913)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 88/148 (59%), Positives = 117/148 (79%)

Query:     2 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
             ++EAW+MDE++ D RLPH   P + V L+QL  LGVLYW+L+   YEND EL+KIR+ R 
Sbjct:     1 MVEAWYMDEAADDPRLPHRAEPARPVGLEQLRRLGVLYWKLDADKYENDPELEKIRKERN 60

Query:    62 YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
             YS++D++ +  +K+ NYEEK+K F+ EH+H DEEIRY L+GSGYFDVRD+ D+WIRI ++
Sbjct:    61 YSWVDIITISKDKLPNYEEKIKMFFEEHLHLDEEIRYILDGSGYFDVRDQEDRWIRISME 120

Query:   122 AGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
              GD+I LPAGIYHRFTLD  NYVK M++
Sbjct:   121 KGDMITLPAGIYHRFTLDEKNYVKAMRL 148

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q5ZL43 ADI1 "1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase" [Gallus gallus (taxid:9031)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 90/148 (60%), Positives = 117/148 (79%)

Query:     2 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
             ++EAW+MDES +DQR PH L P + VSL+QL  LGV Y RL+  NYE D  L++IREA  
Sbjct:     1 MVEAWYMDESQEDQRAPHRLQPNRAVSLEQLRRLGVAYRRLDADNYETDPRLKEIREAEN 60

Query:    62 YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
             YS+MD++ +  +K+ NYEEK+K FY EH+H D+EIRY L+GSGYFDVRD+ D+WIRI ++
Sbjct:    61 YSWMDIVTIHKDKLPNYEEKIKTFYEEHLHLDDEIRYILDGSGYFDVRDKDDKWIRISME 120

Query:   122 AGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
              GD+I LPAGIYHRFTLD +NYVK M++
Sbjct:   121 KGDMITLPAGIYHRFTLDENNYVKAMRL 148

GO:0046872 "metal ion binding" evidence=IEA

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IEA

UNIPROTKB|Q9BV57 ADI1 "1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase" [Homo sapiens (taxid:9606)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 85/148 (57%), Positives = 116/148 (78%)

Query:     2 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARG 61
             +++AW+MD++  D R PH  +P + V L+QL  LGVLYW+L+   YEND EL+KIR  R 
Sbjct:     1 MVQAWYMDDAPGDPRQPHRPDPGRPVGLEQLRRLGVLYWKLDADKYENDPELEKIRRERN 60

Query:    62 YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
             YS+MD++ +C +K+ NYEEK+K FY EH+H D+EIRY L+GSGYFDVRD+ DQWIRI+++
Sbjct:    61 YSWMDIITICKDKLPNYEEKIKMFYEEHLHLDDEIRYILDGSGYFDVRDKEDQWIRIFME 120

Query:   122 AGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
              GD++ LPAGIYHRFT+D  NY K M++
Sbjct:   121 KGDMVTLPAGIYHRFTVDEKNYTKAMRL 148

GO:0046872 "metal ion binding" evidence=IEA

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IEA;IDA;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016491 "oxidoreductase activity" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006595 "polyamine metabolic process" evidence=TAS

GO:0010309 "acireductone dioxygenase [iron(II)-requiring

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
E0W481	MTND_PEDHC	1, ., 1, 3, ., 1, 1, ., 5, 4	0.5342	0.9062	0.8055	N/A	no
Q6DIY2	MTND_XENTR	1, ., 1, 3, ., 1, 1, ., 5, 4	0.5771	0.9312	0.8324	yes	no
Q5ZL43	MTND_CHICK	1, ., 1, 3, ., 1, 1, ., 5, 4	0.6040	0.9312	0.8277	yes	no
B7PRF6	MTND_IXOSC	1, ., 1, 3, ., 1, 1, ., 5, 4	0.5562	0.9312	0.8142	N/A	no
Q8H185	MTND4_ARATH	1, ., 1, 3, ., 1, 1, ., 5, 4	0.8	0.9375	0.8021	yes	no
Q99JT9	MTND_MOUSE	1, ., 1, 3, ., 1, 1, ., 5, 4	0.6040	0.9312	0.8324	yes	no
Q10RE5	MTND2_ORYSJ	1, ., 1, 3, ., 1, 1, ., 5, 4	0.6845	0.9312	0.7525	yes	no
Q3ZBL1	MTND_BOVIN	1, ., 1, 3, ., 1, 1, ., 5, 4	0.5906	0.9312	0.8324	yes	no
Q3B8C8	MTND_XENLA	1, ., 1, 3, ., 1, 1, ., 5, 4	0.5637	0.9312	0.8324	N/A	no
F7FKV1	MTND_MONDO	1, ., 1, 3, ., 1, 1, ., 5, 4	0.5906	0.9312	0.8324	yes	no
Q2LZI9	MTND_DROPS	1, ., 1, 3, ., 1, 1, ., 5, 4	0.5034	0.9062	0.7754	yes	no
C3ZAH2	MTND_BRAFL	1, ., 1, 3, ., 1, 1, ., 5, 4	0.6040	0.9187	0.8305	yes	no
Q9BV57	MTND_HUMAN	1, ., 1, 3, ., 1, 1, ., 5, 4	0.5704	0.9312	0.8324	yes	no
Q562C9	MTND_RAT	1, ., 1, 3, ., 1, 1, ., 5, 4	0.5906	0.9312	0.8324	yes	no
Q6PBX5	MTND_DANRE	1, ., 1, 3, ., 1, 1, ., 5, 4	0.6266	0.9312	0.8232	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.11.24	LOW CONFIDENCE prediction!
3rd Layer	1.13.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.8__436__AT5G43850.1	annotation not avaliable (187 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh1_pm.C_scaffold_8001076	annotation not avaliable (519 aa)	•	•	•			•	•		0.802
	fgenesh2_kg.3__2898__AT2G05830.1	annotation not avaliable (369 aa)	•		•				•		0.735

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
pfam03079	157	pfam03079, ARD, ARD/ARD' family	6e-68
COG1791	181	COG1791, COG1791, Uncharacterized conserved protei	1e-31
pfam07883	70	pfam07883, Cupin_2, Cupin domain	6e-09
pfam02311	134	pfam02311, AraC_binding, AraC-like ligand binding	2e-04
COG1917	131	COG1917, COG1917, Uncharacterized conserved protei	3e-04
COG0662	127	COG0662, {ManC}, Mannose-6-phosphate isomerase [Ca	4e-04

>gnl|CDD|217357 pfam03079, ARD, ARD/ARD' family

 Score =  202 bits (517), Expect = 6e-68
 Identities = 81/148 (54%), Positives = 109/148 (73%), Gaps = 2/148 (1%)

Query: 4   EAWFMDES-SQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGY 62
           +AW MD+S   DQRLPHH  PK+    D+LA+LGVLYW+L+  + E  EEL +IR+ + Y
Sbjct: 1   QAWIMDDSPCGDQRLPHHTFPKEKAETDELAKLGVLYWKLDADDEETAEELLRIRKYKHY 60

Query: 63  SYMDLL-DLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIK 121
             +D+   +CPE   N++EKLK F+ EH+H DEEIRY +EG+GYFDVRD+ D WIR++++
Sbjct: 61  DDVDIDVTVCPETTPNFDEKLKKFFEEHLHTDEEIRYIVEGTGYFDVRDKDDVWIRVFVE 120

Query: 122 AGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
            GDLI LPAGIYHRFT    NYVK +++
Sbjct: 121 KGDLISLPAGIYHRFTTTPDNYVKALRL 148

The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalyzed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels. This family also contains other members, whose functions are not well characterized. Length = 157

>gnl|CDD|224704 COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

 Score =  110 bits (278), Expect = 1e-31
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 7/144 (4%)

Query: 9   DESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNY---ENDEELQKIREARGYSYM 65
             ++QD+  P     K  VS ++  E   L      K +     + E+ ++   RGY   
Sbjct: 12  IITNQDEIAPE--LSKIEVSFERW-EATALIKHGAEKEHIIDAYETEIDRLIRERGYKNR 68

Query: 66  DLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDL 125
           D++ + P      +E    F  EH+H D+E+RY + G G FDV     +  +I  + GDL
Sbjct: 69  DVVSVSPSN-PKLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDL 127

Query: 126 IVLPAGIYHRFTLDTSNYVKVMQI 149
           I +P GIYH FTL  S   K +++
Sbjct: 128 ISVPPGIYHWFTLTESPNFKAVRL 151

Length = 181

>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain

 Score = 49.6 bits (119), Expect = 6e-09
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147
            H H  EE  Y LEG G   V  E      + +KAGD +  PAG+ HRF        +++
Sbjct: 13  PHRHPGEEFFYVLEGEGELTVDGE-----EVVLKAGDSVYFPAGVPHRFRNTGDEPARLL 67

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). Length = 70

>gnl|CDD|145456 pfam02311, AraC_binding, AraC-like ligand binding domain

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 86  YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 142
           +  H+H    I Y   G G   +           +  GDL +LP G  H +  ++ +
Sbjct: 16  FPPHVHDFYVIGYIERGVGRLRLNGR-----TYHLGPGDLFLLPPGEPHDYEPESED 67

This family represents the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190. Length = 134

>gnl|CDD|224829 COG1917, COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 88  EHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
            H H   E+  Y LEG G   +  E        +KAGD+I++P G+ H  
Sbjct: 58  WHTHPLGEQTIYVLEGEGTVQLEGEK-----KELKAGDVIIIPPGVVHGL 102

Length = 131

>gnl|CDD|223734 COG0662, {ManC}, Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 86  YTEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
            + H H   +E  Y LEG+G   +  E      + +KAGD + +PAG  HR 
Sbjct: 49  ISLHHHHHRDEHWYVLEGTGKVTIGGEE-----VEVKAGDSVYIPAGTPHRV 95

Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
KOG2107	179	consensus Uncharacterized conserved protein, conta	100.0
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	100.0
COG1791	181	Uncharacterized conserved protein, contains double	100.0
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.29
COG1917	131	Uncharacterized conserved protein, contains double	99.18
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.17
PRK04190	191	glucose-6-phosphate isomerase; Provisional	99.05
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	99.05
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.01
PRK13290	125	ectC L-ectoine synthase; Reviewed	99.01
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	98.98
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.96
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	98.95
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.84
COG3837	161	Uncharacterized conserved protein, contains double	98.77
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	98.76
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	98.74
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	98.7
PRK13500	312	transcriptional activator RhaR; Provisional	98.68
PRK13501	290	transcriptional activator RhaR; Provisional	98.67
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.66
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	98.66
PRK11171	266	hypothetical protein; Provisional	98.66
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.64
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	98.64
PRK13503	278	transcriptional activator RhaS; Provisional	98.57
PRK13502	282	transcriptional activator RhaR; Provisional	98.55
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.52
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	98.52
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	98.51
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.5
PRK11171	266	hypothetical protein; Provisional	98.4
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	98.38
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.38
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.35
PLN00212	493	glutelin; Provisional	98.29
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	98.28
COG4297	163	Uncharacterized protein containing double-stranded	98.09
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	98.05
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	98.02
PLN00212	493	glutelin; Provisional	97.98
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	97.94
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	97.91
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.89
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	97.84
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.74
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	97.72
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	97.66
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	97.53
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	97.49
PF12852	186	Cupin_6: Cupin	97.43
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	97.43
COG3450	116	Predicted enzyme of the cupin superfamily [General	97.07
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	97.06
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	96.91
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	96.59
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	96.56
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	96.49
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	96.39
COG3257	264	GlxB Uncharacterized protein, possibly involved in	96.26
PF14525	172	AraC_binding_2: AraC-binding-like domain	96.26
PLN02658	435	homogentisate 1,2-dioxygenase	96.17
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	96.08
COG3257	264	GlxB Uncharacterized protein, possibly involved in	96.07
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	95.63
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	95.43
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	95.31
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	95.25
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	95.14
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	94.95
KOG3995	279	consensus 3-hydroxyanthranilate oxygenase HAAO [Am	94.54
COG3508	427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	93.91
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	93.39
PF07385	225	DUF1498: Protein of unknown function (DUF1498); In	93.33
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	93.15
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	92.94
PRK15131	389	mannose-6-phosphate isomerase; Provisional	92.22
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	92.1
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	91.88
COG1741	276	Pirin-related protein [General function prediction	91.38
PF13759	101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	91.38
COG3822	225	ABC-type sugar transport system, auxiliary compone	91.22
PRK12335	287	tellurite resistance protein TehB; Provisional	89.67
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	89.39
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	89.15
PRK10579	94	hypothetical protein; Provisional	89.15
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	89.09
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	87.46
PRK15131	389	mannose-6-phosphate isomerase; Provisional	86.48
PHA02890	278	hypothetical protein; Provisional	85.89
PF06719	155	AraC_N: AraC-type transcriptional regulator N-term	84.97
PHA02984	286	hypothetical protein; Provisional	84.38
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	83.75
PF06172	139	Cupin_5: Cupin superfamily (DUF985); InterPro: IPR	82.48
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	80.9
PLN02288	394	mannose-6-phosphate isomerase	80.72
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	80.29

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=100.00  E-value=2.7e-57  Score=347.17  Aligned_cols=157  Identities=62%  Similarity=1.161  Sum_probs=154.1

Q ss_pred             ceEEEEecCC-CCCCCCCCccCCCCcCCHhHHhhcCcEEEecCCCCCCChHHHHHHHHhcCCceeeeeeeCCCcccCHHH
Q 031374            2 VLEAWFMDES-SQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEE   80 (160)
Q Consensus         2 ~~~aw~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~GV~~w~~~~~~~~~~~~l~~l~~~~gy~~~dvi~v~~~~~p~~~~   80 (160)
                      ||+||||+++ ++|||+|||.+|++.+|+++|+++||+||++++|+++.+.+|++|++++||+.+|+++++++++|||+.
T Consensus         1 m~qaw~mdd~~~~D~RlPhh~~p~~~vs~d~L~~lGVly~kld~D~~e~~~~L~~lr~e~~~~~~d~~~~~~e~~~nfde   80 (179)
T KOG2107|consen    1 MMQAWYMDDSPCEDQRLPHHKDPKKEVSLDELARLGVLYWKLDADNYELDEELDRLREERGYSYMDICTVCPETLPNFDE   80 (179)
T ss_pred             CeeEEEcCCCCcccccCCCCCCCcccCCHHHHHhhCcEEEEecCchHHHHHHHHHHHHHcCCceeeEEEEchhhcccHHH
Confidence            8999999996 599999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcccCC
Q 031374           81 KLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQS  158 (160)
Q Consensus        81 ~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w~~  158 (160)
                      +++.|+.+|.|.++|||||++|+|+|+|++++|.||+|.|++||+|+||||++|+|+.++.++++|+|||+++|+|+.
T Consensus        81 Kvk~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~vkamRlF~~~p~wta  158 (179)
T KOG2107|consen   81 KVKSFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNYVKAMRLFVGEPKWTA  158 (179)
T ss_pred             HHHHHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHHHHHHHHhcCCccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999985

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=100.00  E-value=1.1e-45  Score=285.04  Aligned_cols=154  Identities=53%  Similarity=0.903  Sum_probs=132.8

Q ss_pred             EEEEecCCC-CCCCCCCccCCCCcCCHhHHhhcCcEEEecCCCCCCChHHHHHHHHhcCCceeee-eeeCCCcccCHHHH
Q 031374            4 EAWFMDESS-QDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDL-LDLCPEKVTNYEEK   81 (160)
Q Consensus         4 ~aw~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~GV~~w~~~~~~~~~~~~l~~l~~~~gy~~~dv-i~v~~~~~p~~~~~   81 (160)
                      +|||||+.+ +|+++||+++|++++|.++|+++||.+|+++++..++...++.+++.++|...++ +...+...|+|+++
T Consensus         1 ~~~~~d~~~~~d~~~~~~~~p~~~~s~~~l~~~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~p~~~~~   80 (157)
T PF03079_consen    1 RAWYYDEEDPGDQRLPHHSDPDKIVSLLQLAGLGVLYWKLDADDPEDAEELQIIRAYRNYIDRDIDVVSLHPDHPNYEAK   80 (157)
T ss_dssp             EEEEB-S--S-STCCEEE-SCHHCHHHHHCCCTCEEEEE-SCGGTTS-HHHHHHHHCHCHHCCCCEEEESTTTSTCHHHH
T ss_pred             CEEEECCCCcccCCCcccCCcccccCHHHhhCceEEEeecCCCccCCccHHHHHHHHcCCceEEEEEEecCCCCcchhHH
Confidence            699999976 7999999999999999999999999999999887777888999999999988877 55554557999999


Q ss_pred             hcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcccC
Q 031374           82 LKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQ  157 (160)
Q Consensus        82 ~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w~  157 (160)
                      +++|+.+|+|+++|+|||++|+|+|++++.++.|+++.|++||+|+||+|++|||+++++++++|||||+++|+|+
T Consensus        81 ~~~f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~~~gWv  156 (157)
T PF03079_consen   81 LKKFFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKDEPGWV  156 (157)
T ss_dssp             HHHHCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESSCGGEE
T ss_pred             hhhhheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999996

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=100.00  E-value=9.5e-38  Score=240.84  Aligned_cols=148  Identities=28%  Similarity=0.523  Sum_probs=130.2

Q ss_pred             ceEEEEecCCCCCCCCCCccCCCCcCCHhHHhhcCcEE--EecCCCCCC----------ChHHHHHHHHhcCCceeeeee
Q 031374            2 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLY--WRLNPKNYE----------NDEELQKIREARGYSYMDLLD   69 (160)
Q Consensus         2 ~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~L~~~GV~~--w~~~~~~~~----------~~~~l~~l~~~~gy~~~dvi~   69 (160)
                      |++.+.+|+.      .-..+++++  +.+|+++||.+  |.+.+....          ...++++|++++||+++|+|+
T Consensus         1 Ms~l~I~d~~------~~~~~~dei--a~~l~~i~v~~e~we~~~~~~~~~~~~~i~~a~~~eid~l~~e~Gyk~~Dvvs   72 (181)
T COG1791           1 MSRLRIHDET------KIITNQDEI--APELSKIEVSFERWEATALIKHGAEKEHIIDAYETEIDRLIRERGYKNRDVVS   72 (181)
T ss_pred             CceEEEecCc------ccccCHhHh--hhhcccceeEhhhhhhccccccCcchhhhHhhHHHHHHHHHHhhCCceeeEEE
Confidence            7888888776      122345666  68899999997  764433111          257899999999999999999


Q ss_pred             eCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           70 LCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        70 v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      |+|++ |++++++++|+++|+|+++|+||||+|.|+|.+++.+|+|+.+.|++||+|+||+|++|||+++++++|+||||
T Consensus        73 v~~~~-pk~del~akF~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRl  151 (181)
T COG1791          73 VSPSN-PKLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRL  151 (181)
T ss_pred             eCCCC-ccHHHHHHHHHHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEE
Confidence            99986 99999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             ecCCcccCC
Q 031374          150 LSYGVQRQS  158 (160)
Q Consensus       150 f~~~p~w~~  158 (160)
                      |+..|.|..
T Consensus       152 F~~~~gWVa  160 (181)
T COG1791         152 FTEPEGWVA  160 (181)
T ss_pred             eeCCCCcee
Confidence            999999974

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.29  E-value=1.3e-11  Score=81.19  Aligned_cols=61  Identities=30%  Similarity=0.502  Sum_probs=56.1

Q ss_pred             cccceecCcc-eEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           85 FYTEHIHADE-EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        85 ~~~~H~H~~~-Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      ....|.|+.. |++||++|++.+.++++     ++.+++||.+.+|+|+.|++.+.++..++.+.+|
T Consensus        10 ~~~~h~H~~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~   71 (71)
T PF07883_consen   10 SIPPHRHPGEDEFFYVLSGEGTLTVDGE-----RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY   71 (71)
T ss_dssp             EEEEEEESSEEEEEEEEESEEEEEETTE-----EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred             CCCCEECCCCCEEEEEEECCEEEEEccE-----EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence            4679999977 99999999999999988     9999999999999999999999888899888776

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.18  E-value=9.4e-11  Score=86.78  Aligned_cols=65  Identities=26%  Similarity=0.491  Sum_probs=55.4

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      +....+|+|+ .++..||++|++++.++++     ...+++||+|++|||+.|++.+.++.....|.++..
T Consensus        53 G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~-----~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~~~  118 (131)
T COG1917          53 GAVIPWHTHPLGEQTIYVLEGEGTVQLEGE-----KKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLVFPL  118 (131)
T ss_pred             CcccccccCCCcceEEEEEecEEEEEecCC-----ceEecCCCEEEECCCCeeeeccCCCCceeEEEEeee
Confidence            3457899998 8899999999999999977     899999999999999999999887765555555443

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.17  E-value=1.1e-10  Score=86.68  Aligned_cols=65  Identities=28%  Similarity=0.423  Sum_probs=54.6

Q ss_pred             cceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcccCC
Q 031374           87 TEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQS  158 (160)
Q Consensus        87 ~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w~~  158 (160)
                      ..|.|. .+|++||++|+|.+.++++     .+.+++||.++||+|+.|++.+..+..++++.+-  .|.|..
T Consensus        50 ~~~~H~~~dE~~~Vl~G~g~v~~~~~-----~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~--~p~~~~  115 (127)
T COG0662          50 SLHHHHHRDEHWYVLEGTGKVTIGGE-----EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQ--SPPYLG  115 (127)
T ss_pred             CcccccCcceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCcceEEEEEe--cCCcCC
Confidence            455554 6999999999999999988     9999999999999999999999888888877553  344543

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=99.05  E-value=2.8e-09  Score=84.80  Aligned_cols=86  Identities=22%  Similarity=0.261  Sum_probs=67.9

Q ss_pred             ceeeeeeeCCCcccCHHHHhcCcccceecC---cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374           63 SYMDLLDLCPEKVTNYEEKLKNFYTEHIHA---DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus        63 ~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~---~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      -..++.++.|...+.-    -..-..|.|.   ..|++||++|+|.+.+.+.++....+.+++||+++||+|..|++.+.
T Consensus        68 L~~g~t~l~PG~~g~e----~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~  143 (191)
T PRK04190         68 LNFGTTRLYPGKVGDE----YFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNT  143 (191)
T ss_pred             eEEEEEEECCCcEecc----cccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEEC
Confidence            4578888998764310    0112347884   46999999999999998776677789999999999999999999998


Q ss_pred             CCCcEEEEEEecC
Q 031374          140 TSNYVKVMQILSY  152 (160)
Q Consensus       140 ~~~~~~~ir~f~~  152 (160)
                      ++..++++.++..
T Consensus       144 G~epl~fl~v~p~  156 (191)
T PRK04190        144 GDEPLVFLACYPA  156 (191)
T ss_pred             CCCCEEEEEEEcC
Confidence            8888888876643

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=99.05  E-value=9e-10  Score=78.99  Aligned_cols=57  Identities=28%  Similarity=0.455  Sum_probs=44.3

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEE
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVK  145 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~  145 (160)
                      ..+..|.|+..|+.||++|+|.+.++++     .+.++|||++++|||..|++...++..+.
T Consensus        14 ~~~~~h~h~~~~i~~v~~G~~~~~~~~~-----~~~l~~g~~~li~p~~~H~~~~~~~~~~~   70 (136)
T PF02311_consen   14 FEFPPHWHDFYEIIYVLSGEGTLHIDGQ-----EYPLKPGDLFLIPPGQPHSYYPDSNEPWE   70 (136)
T ss_dssp             -SEEEETT-SEEEEEEEEE-EEEEETTE-----EEEE-TT-EEEE-TTS-EEEEE-TTSEEE
T ss_pred             CccCCEECCCEEEEEEeCCEEEEEECCE-----EEEEECCEEEEecCCccEEEecCCCCCEE
Confidence            3457899999999999999999999998     99999999999999999999988764444

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>smart00835 Cupin_1 Cupin

Probab=99.01  E-value=3.8e-09  Score=79.77  Aligned_cols=70  Identities=20%  Similarity=0.352  Sum_probs=59.3

Q ss_pred             cccceecC-cceEEEEeeeeEEEEEecCC-CcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCc
Q 031374           85 FYTEHIHA-DEEIRYCLEGSGYFDVRDES-DQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV  154 (160)
Q Consensus        85 ~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~-~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p  154 (160)
                      ....|+|. .+|++||++|++.+.+.+++ ++...+.+++||++.||+|+.|++.+.++..+.++.+....|
T Consensus        42 ~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~~~~~  113 (146)
T smart00835       42 MLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNTNDP  113 (146)
T ss_pred             CcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEEecCCC
Confidence            46799997 78999999999999998653 467789999999999999999999988778888886655543

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=99.01  E-value=1.9e-09  Score=80.43  Aligned_cols=63  Identities=19%  Similarity=0.296  Sum_probs=53.2

Q ss_pred             ccceecCcceEEEEeeeeEEEE-Ee-cCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcccC
Q 031374           86 YTEHIHADEEIRYCLEGSGYFD-VR-DESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQ  157 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~-i~-~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w~  157 (160)
                      ...|+|...|+.||++|++.+. +. ++     .+.+++||.+.+|++..|++.+.  ..+.+|.+++  |.|.
T Consensus        48 ~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v~t--P~~~  112 (125)
T PRK13290         48 THLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDKHDRHYLRAG--EDMRLVCVFN--PPLT  112 (125)
T ss_pred             ccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECCCCcEEEEcC--CCEEEEEEEC--CCCC
Confidence            4668886679999999999999 74 77     89999999999999999999997  5777777766  4443

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=98.98  E-value=6.3e-09  Score=90.11  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=61.0

Q ss_pred             CcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      .....|+|. .+|++||++|++.+.+.+.+++-....+++||+++||+|..|++.+..+..++++.+|..
T Consensus       256 ~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s  325 (367)
T TIGR03404       256 AMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKA  325 (367)
T ss_pred             CccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECC
Confidence            446899998 689999999999999976555555789999999999999999999988889999999876

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.96  E-value=4.3e-09  Score=87.10  Aligned_cols=74  Identities=19%  Similarity=0.250  Sum_probs=60.8

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~  143 (160)
                      ...++++.|+.         .....|.|..+|.+|||+|+|.|.++++     .+.|++||+|.||||.+|++.++....
T Consensus       180 ~~~~~~~~PG~---------~~~~~~~H~~eh~~yiL~G~G~~~~~g~-----~~~V~~GD~i~i~~~~~h~~~~~G~~~  245 (260)
T TIGR03214       180 NVHILSFEPGA---------SHPYIETHVMEHGLYVLEGKGVYNLDNN-----WVPVEAGDYIWMGAYCPQACYAGGRGE  245 (260)
T ss_pred             EEEEEEECCCc---------ccCCcccccceeEEEEEeceEEEEECCE-----EEEecCCCEEEECCCCCEEEEecCCCc
Confidence            44567777653         1222577889999999999999999988     999999999999999999999988888


Q ss_pred             EEEEEEecC
Q 031374          144 VKVMQILSY  152 (160)
Q Consensus       144 ~~~ir~f~~  152 (160)
                      ++.| ++++
T Consensus       246 ~~~l-~ykd  253 (260)
T TIGR03214       246 FRYL-LYKD  253 (260)
T ss_pred             EEEE-EEcc
Confidence            8887 4443

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=98.95  E-value=6.2e-09  Score=78.43  Aligned_cols=71  Identities=27%  Similarity=0.378  Sum_probs=54.6

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCC-----cEEEEE--EcCCcEEEeCCCCeeeeeeCC-CCcEEEEEEecCCc
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESD-----QWIRIW--IKAGDLIVLPAGIYHRFTLDT-SNYVKVMQILSYGV  154 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~-----~~~~~~--v~~GDli~iP~g~~H~f~~~~-~~~~~~ir~f~~~p  154 (160)
                      .....|+|...|+.||++|++++.+-..++     +.....  +++||+++||+|..||..+++ ++.+..+.|+...|
T Consensus        45 ~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~  123 (144)
T PF00190_consen   45 GLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNP  123 (144)
T ss_dssp             EEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESST
T ss_pred             CccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCC
Confidence            357899998899999999999998876654     344555  999999999999999999887 45555555555554

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.84  E-value=1.4e-08  Score=79.40  Aligned_cols=61  Identities=21%  Similarity=0.327  Sum_probs=54.8

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      ...|+|..+|+.||++|+..+.++++     .+.+++||.+.+|++++|++.+.++..++++.++.
T Consensus       121 ~~~~~h~~~E~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~  181 (185)
T PRK09943        121 GERIKHQGEEIGTVLEGEIVLTINGQ-----DYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHT  181 (185)
T ss_pred             ccccccCCcEEEEEEEeEEEEEECCE-----EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeC
Confidence            34677889999999999999999988     99999999999999999999987777888887765

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.77  E-value=4.6e-08  Score=75.33  Aligned_cols=76  Identities=21%  Similarity=0.331  Sum_probs=64.1

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCC--CeeeeeeCCC
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTLDTS  141 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g--~~H~f~~~~~  141 (160)
                      ..+..|.|+.         .-...|+|+ ++|++|||+|++.+.+++.     +..|+|||.+-.|||  +.|.|.+.+.
T Consensus        44 vn~~~v~PG~---------~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~-----e~~lrpGD~~gFpAG~~~aHhliN~s~  109 (161)
T COG3837          44 VNLEIVEPGG---------ESSLRHWHSAEDEFVYILEGEGTLREDGG-----ETRLRPGDSAGFPAGVGNAHHLINRSD  109 (161)
T ss_pred             cceEEeCCCC---------ccccccccccCceEEEEEcCceEEEECCe-----eEEecCCceeeccCCCcceeEEeecCC
Confidence            4455666663         224689997 7999999999999999988     999999999999999  9999999998


Q ss_pred             CcEEEEEEecCCc
Q 031374          142 NYVKVMQILSYGV  154 (160)
Q Consensus       142 ~~~~~ir~f~~~p  154 (160)
                      ..++.+.+-..+|
T Consensus       110 ~~~~yL~vG~r~~  122 (161)
T COG3837         110 VILRYLEVGTREP  122 (161)
T ss_pred             ceEEEEEeccccc
Confidence            8888887766554

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=98.76  E-value=5.8e-08  Score=84.15  Aligned_cols=67  Identities=25%  Similarity=0.271  Sum_probs=56.3

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ....|+|...|+.||++|++.+.+.+.+++.+...+++||++++|+|..|++.+.. ..+.++-+|..
T Consensus        79 ~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~  145 (367)
T TIGR03404        79 IRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDD  145 (367)
T ss_pred             CCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCC
Confidence            35799999899999999999999987767776668999999999999999999874 44666665554

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=98.74  E-value=7.5e-08  Score=77.40  Aligned_cols=69  Identities=25%  Similarity=0.360  Sum_probs=61.5

Q ss_pred             CcccceecC-cc--eEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           84 NFYTEHIHA-DE--EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        84 ~~~~~H~H~-~~--Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      .....|+|. .+  |++|+++|+|.+.+...+++.+.+.+++||+++||+|--|+..++....+.++-+|..
T Consensus        91 ~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~  162 (209)
T COG2140          91 AMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPA  162 (209)
T ss_pred             cccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeC
Confidence            345679997 34  4999999999999999889999999999999999999999999999999998888765

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=98.70  E-value=6.8e-08  Score=74.84  Aligned_cols=56  Identities=27%  Similarity=0.395  Sum_probs=47.4

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      ...|.|+.+|++|+++|+..+.+.+. ++.-.+.+++||+++||+|++|+....++.
T Consensus        41 ~d~H~~~tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~t   96 (159)
T TIGR03037        41 TDFHDDPGEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAGS   96 (159)
T ss_pred             cccccCCCceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCCc
Confidence            46889999999999999999999864 333369999999999999999999876543

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PRK13500 transcriptional activator RhaR; Provisional

Probab=98.68  E-value=4.4e-08  Score=82.31  Aligned_cols=56  Identities=23%  Similarity=0.330  Sum_probs=49.9

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEE
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVK  145 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~  145 (160)
                      .+.+|+|+..|+.||++|+|.+.+++.     .+.+++||+++||+|..|.+...++....
T Consensus        60 ~~~~H~H~~~el~~v~~G~g~~~v~~~-----~~~l~~Gdl~~I~~~~~H~~~~~~~~~~~  115 (312)
T PRK13500         60 VFAEHTHDFCELVIVWRGNGLHVLNDR-----PYRITRGDLFYIHADDKHSYASVNDLVLQ  115 (312)
T ss_pred             CCCccccceEEEEEEEcCeEEEEECCE-----EEeecCCeEEEECCCCeecccccCCceEE
Confidence            468999999999999999999999998     99999999999999999999875554333

>PRK13501 transcriptional activator RhaR; Provisional

Probab=98.67  E-value=4.2e-08  Score=81.06  Aligned_cols=51  Identities=25%  Similarity=0.362  Sum_probs=47.2

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      ...|+|+..|+.||++|+|.+.|++.     .+.+++||+++||+|..|.+...++
T Consensus        31 ~~~H~H~~~ei~~i~~G~~~~~i~~~-----~~~l~~g~~~~I~p~~~H~~~~~~~   81 (290)
T PRK13501         31 FVEHTHQFCEIVIVWRGNGLHVLNDH-----PYRITCGDVFYIQAADHHSYESVHD   81 (290)
T ss_pred             CccccccceeEEEEecCceEEEECCe-----eeeecCCeEEEEcCCCcccccccCC
Confidence            56899999999999999999999998     9999999999999999999876543

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.66  E-value=8.3e-08  Score=75.46  Aligned_cols=56  Identities=25%  Similarity=0.406  Sum_probs=47.0

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      ....|.|+.+|++|+++|+..+.+.+ +++--.+.+++||+++||+|++|+....++
T Consensus        46 r~d~H~~~tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~~~  101 (177)
T PRK13264         46 RTDFHYDPGEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQREAG  101 (177)
T ss_pred             ccccccCCCceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccCCC
Confidence            35789999999999999999999975 233337999999999999999999876443

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=98.66  E-value=4.9e-08  Score=81.90  Aligned_cols=53  Identities=21%  Similarity=0.279  Sum_probs=48.0

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~  143 (160)
                      ...|||.+.|+.|+++|++.|.++++     .+.+.+||+++||+|++|.+...++..
T Consensus        39 ~~~HwH~e~Ei~yv~~G~~~~~i~g~-----~~~l~~Gd~ili~s~~~H~~~~~~~~~   91 (302)
T PRK10371         39 PTSHWHGQVEVNVPFDGDVEYLINNE-----KVQINQGHITLFWACTPHQLTDPGNCR   91 (302)
T ss_pred             CCCCccccEEEEEecCCcEEEEECCE-----EEEEcCCcEEEEecCCcccccccCCCc
Confidence            57899999999999999999999998     999999999999999999987655433

>PRK11171 hypothetical protein; Provisional

Probab=98.66  E-value=1.3e-07  Score=78.54  Aligned_cols=55  Identities=22%  Similarity=0.308  Sum_probs=50.3

Q ss_pred             eecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEE
Q 031374           89 HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ  148 (160)
Q Consensus        89 H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir  148 (160)
                      |.|..+|.+||++|++.+.++++     .+.|++||.|.+|++..|+|.+..+..++.+.
T Consensus       201 ~~~~~ee~i~Vl~G~~~~~~~~~-----~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~  255 (266)
T PRK11171        201 ETHVMEHGLYVLEGKGVYRLNND-----WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLL  255 (266)
T ss_pred             cCCCceEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCCEEEECCCCCcEEEEE
Confidence            56889999999999999999988     99999999999999999999988777777764

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.64  E-value=2.1e-07  Score=73.57  Aligned_cols=88  Identities=23%  Similarity=0.320  Sum_probs=56.7

Q ss_pred             HhcCCceeeeeeeCCCcccC-HHHHhcCcccceecC-------cceEEEEeeeeEEEEEecCCC----cEEEEEEcCCcE
Q 031374           58 EARGYSYMDLLDLCPEKVTN-YEEKLKNFYTEHIHA-------DEEIRYCLEGSGYFDVRDESD----QWIRIWIKAGDL  125 (160)
Q Consensus        58 ~~~gy~~~dvi~v~~~~~p~-~~~~~~~~~~~H~H~-------~~Ei~yvl~G~g~f~i~~~~~----~~~~~~v~~GDl  125 (160)
                      ++++. ..++..+.|+++++ |-..     .-|.|.       ..|+++|++|+|.|.+.+.++    +++.+.+++||+
T Consensus        46 ~~~~L-~ygiTvi~Pg~vG~E~~~T-----~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~  119 (182)
T PF06560_consen   46 QKRNL-RYGITVIPPGKVGGEYFMT-----KGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDV  119 (182)
T ss_dssp             ----E-EEEEEEE---EETTEE-B--------BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEE
T ss_pred             eeeeE-EeeeEEEcCcccCCccccC-----CCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCE
Confidence            34443 46899999998764 2222     346665       479999999999999998877    789999999999


Q ss_pred             EEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374          126 IVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus       126 i~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      ++||||..|+..+.++..+++.-++.
T Consensus       120 v~IPp~yaH~tIN~g~~~L~~~~~~~  145 (182)
T PF06560_consen  120 VYIPPGYAHRTINTGDEPLVFAAWVP  145 (182)
T ss_dssp             EEE-TT-EEEEEE-SSS-EEEEEEEE
T ss_pred             EEECCCceEEEEECCCCcEEEEEEEe
Confidence            99999999999888888888876654

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=98.64  E-value=1.1e-07  Score=77.91  Aligned_cols=51  Identities=24%  Similarity=0.438  Sum_probs=46.3

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      .....|+|+..|+.||++|++.+.+++.     .+.+++||+++||||..|.+...
T Consensus        34 ~~~~~H~H~~~ei~~v~~G~~~~~i~~~-----~~~l~~g~l~~i~p~~~H~~~~~   84 (278)
T PRK10296         34 SVSGLHQHDYYEFTLVLTGRYYQEINGK-----RVLLERGDFVFIPLGSHHQSFYE   84 (278)
T ss_pred             cCCCCcccccEEEEEEEeceEEEEECCE-----EEEECCCcEEEeCCCCccceeee
Confidence            3457999999999999999999999998     99999999999999999976543

>PRK13503 transcriptional activator RhaS; Provisional

Probab=98.57  E-value=7.9e-08  Score=78.34  Aligned_cols=53  Identities=17%  Similarity=0.218  Sum_probs=48.1

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      .....|+|+..|+.||++|++.+.+++.     .+.+++||+++||+|..|.+...++
T Consensus        26 ~~~~~H~H~~~ei~~v~~G~~~~~i~~~-----~~~l~~g~~~~i~~~~~h~~~~~~~   78 (278)
T PRK13503         26 AAFPEHHHDFHEIVIVEHGTGIHVFNGQ-----PYTLSGGTVCFVRDHDRHLYEHTDN   78 (278)
T ss_pred             ccccccccCceeEEEEecCceeeEecCC-----cccccCCcEEEECCCccchhhhccC
Confidence            3467899999999999999999999998     8999999999999999999876544

>PRK13502 transcriptional activator RhaR; Provisional

Probab=98.55  E-value=1.8e-07  Score=76.70  Aligned_cols=51  Identities=25%  Similarity=0.367  Sum_probs=47.2

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      +..|+|+..|+.||++|+|.+.+++.     .+.+++||+++||+|..|.+...++
T Consensus        31 ~~~H~h~~~~l~~v~~G~~~~~i~~~-----~~~l~~g~l~li~~~~~H~~~~~~~   81 (282)
T PRK13502         31 FAEHTHEFCELVMVWRGNGLHVLNER-----PYRITRGDLFYIRAEDKHSYTSVND   81 (282)
T ss_pred             CCccccceEEEEEEecCcEEEEECCE-----EEeecCCcEEEECCCCcccccccCC
Confidence            57899999999999999999999988     9999999999999999999876554

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.52  E-value=4.1e-07  Score=80.94  Aligned_cols=62  Identities=16%  Similarity=0.317  Sum_probs=54.2

Q ss_pred             ccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           86 YTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        86 ~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ...|.|. ..|+.||++|++.+.++++     .+.+++||.+.+|+|++|++.+.++..++++-++.+
T Consensus       389 ~~~h~H~~~~E~~~Vl~G~~~v~~dg~-----~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~  451 (468)
T TIGR01479       389 LSLQMHHHRAEHWIVVSGTARVTIGDE-----TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSG  451 (468)
T ss_pred             cCccccCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence            4556654 4688899999999999998     999999999999999999999988888998888764

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=98.52  E-value=3.9e-07  Score=74.33  Aligned_cols=45  Identities=29%  Similarity=0.370  Sum_probs=39.9

Q ss_pred             eecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374           89 HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL  138 (160)
Q Consensus        89 H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~  138 (160)
                      .++.++|+.||++|+..|.++++     .+.+++||+++||+|..|.|..
T Consensus       171 wtl~~dEi~YVLEGe~~l~IdG~-----t~~l~pGDvlfIPkGs~~hf~t  215 (233)
T PRK15457        171 WTLNYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFGT  215 (233)
T ss_pred             eeccceEEEEEEEeEEEEEECCE-----EEEeCCCcEEEECCCCeEEecC
Confidence            33468999999999999999988     9999999999999999966643

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=98.51  E-value=2.8e-07  Score=75.57  Aligned_cols=58  Identities=21%  Similarity=0.257  Sum_probs=50.7

Q ss_pred             ccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEE
Q 031374           86 YTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ  148 (160)
Q Consensus        86 ~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir  148 (160)
                      ...|+|+ ..|+.|+++|++.+.+++.     .+.+++||++++|+|+.|.+...++....++.
T Consensus        36 ~~~H~H~~~~~l~~~~~G~~~~~~~~~-----~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i~   94 (287)
T TIGR02297        36 MPVHFHDRYYQLHYLTEGSIALQLDEH-----EYSEYAPCFFLTPPSVPHGFVTDLDADGHVLT   94 (287)
T ss_pred             CCCcccccceeEEEEeeCceEEEECCE-----EEEecCCeEEEeCCCCccccccCCCcceEEEE
Confidence            5789998 7999999999999999988     89999999999999999998876655555554

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.50  E-value=7e-07  Score=79.87  Aligned_cols=61  Identities=13%  Similarity=0.204  Sum_probs=52.5

Q ss_pred             cceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           87 TEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        87 ~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ..|.|. .+|+.||++|++.+.++++     .+.+.+||.+.+|+|++|++.+..+..+.+|.+..+
T Consensus       399 ~~~~H~~~~E~~~VlsG~~~v~idg~-----~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g  460 (478)
T PRK15460        399 SVQMHHHRAEHWVVVAGTAKVTIDGD-----IKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSG  460 (478)
T ss_pred             CcCCCCCCceEEEEEeeEEEEEECCE-----EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence            345543 4699999999999999998     999999999999999999999988888888866443

>PRK11171 hypothetical protein; Provisional

Probab=98.40  E-value=2.5e-06  Score=70.81  Aligned_cols=54  Identities=15%  Similarity=0.192  Sum_probs=47.8

Q ss_pred             CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      ..+|+.||++|++.+.++++     ++.+++||.+.+|++..|++.+..+..++++.+.
T Consensus        82 ~~eE~~~VlsG~l~v~~~g~-----~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~  135 (266)
T PRK11171         82 GAETFLFVVEGEITLTLEGK-----THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIR  135 (266)
T ss_pred             CceEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence            46899999999999999988     9999999999999999999998766677766553

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=98.38  E-value=2.3e-06  Score=65.69  Aligned_cols=71  Identities=20%  Similarity=0.154  Sum_probs=46.6

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecC----CCcEEEEEEcCCcEEEeCCCCeeeeeeCC-CCcEEEEEEecCCcc
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDE----SDQWIRIWIKAGDLIVLPAGIYHRFTLDT-SNYVKVMQILSYGVQ  155 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~----~~~~~~~~v~~GDli~iP~g~~H~f~~~~-~~~~~~ir~f~~~p~  155 (160)
                      --+.|.|+.+||++|++|+|+..+...    .++--++.+.+++.+.||+|..|..-+++ ...+.++.+.+.-|+
T Consensus        56 ~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSrpPv  131 (167)
T PF02041_consen   56 ATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIISRPPV  131 (167)
T ss_dssp             B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEEESSS-
T ss_pred             CCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEecCCCe
Confidence            357899999999999999999999865    35666899999999999999999976555 688999988887664

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.38  E-value=2.4e-06  Score=65.66  Aligned_cols=78  Identities=19%  Similarity=0.352  Sum_probs=62.9

Q ss_pred             hcCCceeeeeeeCCCcccCHHHHhcCcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeee
Q 031374           59 ARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT  137 (160)
Q Consensus        59 ~~gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~  137 (160)
                      ..+|.. -.++|.|+          +.+..|.|. -.|..+|++|+|.+.+++.     ...+.+||.+.||+|..|+..
T Consensus        60 ~~~~~v-kri~V~pG----------~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~-----~~~~~~g~sv~Ip~g~~H~i~  123 (151)
T PF01050_consen   60 GEGYKV-KRITVNPG----------KRLSLQYHHHRSEHWTVVSGTAEVTLDDE-----EFTLKEGDSVYIPRGAKHRIE  123 (151)
T ss_pred             cCCEEE-EEEEEcCC----------CccceeeecccccEEEEEeCeEEEEECCE-----EEEEcCCCEEEECCCCEEEEE
Confidence            345543 46677765          346788886 5899999999999999988     999999999999999999999


Q ss_pred             eCCCCcEEEEEEecC
Q 031374          138 LDTSNYVKVMQILSY  152 (160)
Q Consensus       138 ~~~~~~~~~ir~f~~  152 (160)
                      +..+..+.+|-+=.+
T Consensus       124 n~g~~~L~~IEVq~G  138 (151)
T PF01050_consen  124 NPGKTPLEIIEVQTG  138 (151)
T ss_pred             CCCCcCcEEEEEecC
Confidence            877777777766443

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.35  E-value=3.3e-06  Score=69.97  Aligned_cols=57  Identities=12%  Similarity=0.166  Sum_probs=49.2

Q ss_pred             ceecCc-ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           88 EHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        88 ~H~H~~-~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      .+.|.. +|+.||++|+..+.++++     .+.+++||.+.+|+|..|++.+.++...+++.+
T Consensus        74 ~~~~~g~ee~iyVl~G~l~v~~~g~-----~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v  131 (260)
T TIGR03214        74 GFGGEGIETFLFVISGEVNVTAEGE-----THELREGGYAYLPPGSKWTLANAQAEDARFFLY  131 (260)
T ss_pred             CCCCCceEEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            455665 899999999999999988     899999999999999999999877777776644

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PLN00212 glutelin; Provisional

Probab=98.29  E-value=3.5e-06  Score=75.61  Aligned_cols=69  Identities=19%  Similarity=0.288  Sum_probs=55.7

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCc-----E--------------------EEEEEcCCcEEEeCCCCeeeeee
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQ-----W--------------------IRIWIKAGDLIVLPAGIYHRFTL  138 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~-----~--------------------~~~~v~~GDli~iP~g~~H~f~~  138 (160)
                      .++..|+|...++.||+.|+|.+.+-..+..     .                    -...+++||+|.||+|+.||..+
T Consensus        91 gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN  170 (493)
T PLN00212         91 GLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYN  170 (493)
T ss_pred             cccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECCCCeEEEEe
Confidence            5678899999999999999999998632110     0                    02589999999999999999999


Q ss_pred             CCCCcEEEEEEecC
Q 031374          139 DTSNYVKVMQILSY  152 (160)
Q Consensus       139 ~~~~~~~~ir~f~~  152 (160)
                      +.+..+.++.++.-
T Consensus       171 ~Gd~~~v~v~~~d~  184 (493)
T PLN00212        171 DGDAPVVALYVYDI  184 (493)
T ss_pred             CCCCcEEEEEEEec
Confidence            98888888877653

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.28  E-value=4e-06  Score=62.25  Aligned_cols=74  Identities=19%  Similarity=0.248  Sum_probs=56.7

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      ++-++++.|+.          -..-|.|. .+-.+|+|+|.+....++.-  -....+++||++.||||++|.-.+.++.
T Consensus        47 ~~~~vTi~pgA----------kakaH~H~~hEtaIYvlsG~ah~w~G~rL--E~ha~~~pGDf~YiPpgVPHqp~N~S~e  114 (142)
T COG4101          47 CMHLVTIPPGA----------KAKAHLHEEHETAIYVLSGEAHTWYGNRL--EEHAEVGPGDFFYIPPGVPHQPANLSTE  114 (142)
T ss_pred             eEEEEeeCCCc----------cccccccccccEEEEEEeceeeeeeccce--eeeEEecCCCeEEcCCCCCCcccccCCC
Confidence            57889998763          13579997 57789999999988776531  1268899999999999999997765566


Q ss_pred             cEEEEEE
Q 031374          143 YVKVMQI  149 (160)
Q Consensus       143 ~~~~ir~  149 (160)
                      .+.|+..
T Consensus       115 p~s~vIa  121 (142)
T COG4101         115 PLSAVIA  121 (142)
T ss_pred             CeEEEEE
Confidence            6666644

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=98.09  E-value=1.1e-05  Score=61.26  Aligned_cols=81  Identities=20%  Similarity=0.297  Sum_probs=61.0

Q ss_pred             HHHHHHHHhcCCceeeeeeeCCCcccCHHHHhcCcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeC
Q 031374           51 EELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLP  129 (160)
Q Consensus        51 ~~l~~l~~~~gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP  129 (160)
                      ..++.+.+++|+.+.    .+ +         +-|--.|.|+ ..|++-+++|++...+.+.++.  .+.++.||.|+||
T Consensus        35 ~~~e~~~~~~gW~gs----W~-g---------~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliP   98 (163)
T COG4297          35 AQVEDHFKANGWFGS----WR-G---------GVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIP   98 (163)
T ss_pred             HHHHHHHhhcCCccc----cc-c---------cccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEe
Confidence            468888889997643    11 1         1234567887 5899999999999999987665  7899999999999


Q ss_pred             CCCeeeeeeCCCCcEEEEE
Q 031374          130 AGIYHRFTLDTSNYVKVMQ  148 (160)
Q Consensus       130 ~g~~H~f~~~~~~~~~~ir  148 (160)
                      +|+-|+---.+ ..|..+-
T Consensus        99 AGvGH~rl~sS-~DF~VvG  116 (163)
T COG4297          99 AGVGHCRLHSS-ADFQVVG  116 (163)
T ss_pred             cCcccccccCC-CCeEEEc
Confidence            99999754433 4555553

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.05  E-value=7.6e-06  Score=69.21  Aligned_cols=59  Identities=27%  Similarity=0.458  Sum_probs=49.1

Q ss_pred             cCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEE
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVK  145 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~  145 (160)
                      +...+.|.|+..-+|||++|.|-|.+-+.+    +..+++||+|+.|+++.|.........+.
T Consensus       102 GEvApsHrHsqsAlRFvveG~Ga~T~VdGe----r~~M~~GDfilTP~w~wHdHgn~g~eP~i  160 (351)
T COG3435         102 GEVAPSHRHNQSALRFVVEGKGAYTVVDGE----RTPMEAGDFILTPAWTWHDHGNEGTEPCI  160 (351)
T ss_pred             cccCCcccccccceEEEEeccceeEeecCc----eeeccCCCEEEccCceeccCCCCCCCceE
Confidence            466899999999999999999977765433    99999999999999999987765555444

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=98.02  E-value=1.4e-05  Score=68.69  Aligned_cols=57  Identities=26%  Similarity=0.479  Sum_probs=48.8

Q ss_pred             cCcccceecCcceEEEEeeeeEEE-EEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcE
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYF-DVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYV  144 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f-~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~  144 (160)
                      +.....|.|...-|+||++|+|.| .|+++     ++.+++||++++|++..|...++++..+
T Consensus        91 Ge~~~~HRht~sAl~~vveG~G~~t~V~g~-----~~~~~~gD~~~tP~w~wH~H~n~~d~~~  148 (335)
T TIGR02272        91 GEVAPSHRHTQSALRFIVEGKGAFTAVDGE-----RTTMHPGDFIITPSWTWHDHGNPGDEPM  148 (335)
T ss_pred             CCCCCccccccceEEEEEEcCceEEEECCE-----EEeeeCCCEEEeCCCeeEecccCCCCcE
Confidence            355788999999999999999964 56777     9999999999999999999887765543

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PLN00212 glutelin; Provisional

Probab=97.98  E-value=7.7e-05  Score=67.07  Aligned_cols=70  Identities=9%  Similarity=0.188  Sum_probs=58.8

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecCC-CcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCC
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDES-DQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYG  153 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~-~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~  153 (160)
                      +..+..|||. ..||.||++|+|.+.|-+.+ .+++.-.|++||+++||.|-.|.-.++.+. |..+-|.+..
T Consensus       358 gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~eg-fe~v~F~tna  429 (493)
T PLN00212        358 NALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREG-CQYIAFKTNA  429 (493)
T ss_pred             CcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCc-eEEEEeecCC
Confidence            4568999997 68999999999999998755 568889999999999999999988877544 7777666554

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=97.94  E-value=1.9e-05  Score=63.74  Aligned_cols=68  Identities=19%  Similarity=0.188  Sum_probs=54.5

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~  143 (160)
                      ...++.+.|+          .-++.|.|...|+.+||+|+.    .++     .-...+||+|.+|+|..|...+.++..
T Consensus       128 ~v~Ll~i~pG----------~~~p~H~H~G~E~tlVLeG~f----~de-----~g~y~~Gd~i~~p~~~~H~p~a~~~~~  188 (215)
T TIGR02451       128 RVRLLYIEAG----------QSIPQHTHKGFELTLVLHGAF----SDE-----TGVYGVGDFEEADGSVQHQPRTVSGGD  188 (215)
T ss_pred             EEEEEEECCC----------CccCCCcCCCcEEEEEEEEEE----EcC-----CCccCCCeEEECCCCCCcCcccCCCCC
Confidence            4456666654          347899999999999999993    344     356789999999999999999998888


Q ss_pred             EEEEEEe
Q 031374          144 VKVMQIL  150 (160)
Q Consensus       144 ~~~ir~f  150 (160)
                      |.|+-+.
T Consensus       189 Cicl~v~  195 (215)
T TIGR02451       189 CLCLAVL  195 (215)
T ss_pred             eEEEEEe
Confidence            8887553

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=97.91  E-value=2.9e-05  Score=59.85  Aligned_cols=57  Identities=25%  Similarity=0.337  Sum_probs=42.1

Q ss_pred             CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCc-ccC
Q 031374           92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV-QRQ  157 (160)
Q Consensus        92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p-~w~  157 (160)
                      ..+|+.||++|+....++++     .+..++||+|+||+|..=.|....    ++.-||..-| .|.
T Consensus        94 ~YDEi~~VlEG~L~i~~~G~-----~~~A~~GDvi~iPkGs~I~fst~~----~a~~~Yv~yPa~W~  151 (152)
T PF06249_consen   94 TYDEIKYVLEGTLEISIDGQ-----TVTAKPGDVIFIPKGSTITFSTPD----YARFFYVTYPANWQ  151 (152)
T ss_dssp             SSEEEEEEEEEEEEEEETTE-----EEEEETT-EEEE-TT-EEEEEEEE----EEEEEEEEESTT--
T ss_pred             ecceEEEEEEeEEEEEECCE-----EEEEcCCcEEEECCCCEEEEecCC----CEEEEEEECCCccC
Confidence            57999999999999998888     999999999999999988886533    3444466666 474

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.89  E-value=9.6e-05  Score=63.57  Aligned_cols=98  Identities=17%  Similarity=0.168  Sum_probs=68.3

Q ss_pred             hHHHHHHHH---hcCCceeeeeeeCCCcccC-------HHHHh--cCcccceecCcceEEEEeeeeEEEEEecCCCcEEE
Q 031374           50 DEELQKIRE---ARGYSYMDLLDLCPEKVTN-------YEEKL--KNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIR  117 (160)
Q Consensus        50 ~~~l~~l~~---~~gy~~~dvi~v~~~~~p~-------~~~~~--~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~  117 (160)
                      .+.|+++.+   ..+|.+.-+--++|.+-+.       +-.++  +.....|.|+...|++|++|+|+-.|+++     +
T Consensus       215 ~~aL~~~~~~~~~~~~~g~~l~y~NP~TG~~~~pti~~~~q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~ig~~-----~  289 (335)
T TIGR02272       215 REALDDLTRTGEWDPWHGLKLRYVNPATGGYPMPTIGAFIQLLPKGFRTATYRSTDATVFCVVEGRGQVRIGDA-----V  289 (335)
T ss_pred             HHHHHHHHhccCCCCCceEEEEEeCCCCCCCcchhHHHHHhccCCCCCCCCccccccEEEEEEeCeEEEEECCE-----E
Confidence            566766654   2356555555666653221       22222  24567789999999999999999999988     9


Q ss_pred             EEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcc
Q 031374          118 IWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQ  155 (160)
Q Consensus       118 ~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~  155 (160)
                      +..++||+++||+...|.+.++++  . ++--|++.|.
T Consensus       290 ~~W~~gD~f~vPsW~~~~h~a~~d--a-~Lf~~~D~Pl  324 (335)
T TIGR02272       290 FRFSPKDVFVVPSWHPVRFEASDD--A-VLFSFSDRPV  324 (335)
T ss_pred             EEecCCCEEEECCCCcEecccCCC--e-EEEEecCHHH
Confidence            999999999999998888777643  2 2333555553

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=97.84  E-value=6.6e-05  Score=52.33  Aligned_cols=58  Identities=34%  Similarity=0.377  Sum_probs=42.1

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      .-++.+.|+          ..++.|.|...|-.|||+|+...  ++.     .  ..+||++..|+|..|.+...+.
T Consensus        26 ~~L~r~~pG----------~~~p~H~H~g~ee~~VLeG~~~d--~~~-----~--~~~G~~~~~p~g~~h~~~s~~g   83 (91)
T PF12973_consen   26 VSLLRLEPG----------ASLPRHRHPGGEEILVLEGELSD--GDG-----R--YGAGDWLRLPPGSSHTPRSDEG   83 (91)
T ss_dssp             EEEEEE-TT----------EEEEEEEESS-EEEEEEECEEEE--TTC-----E--EETTEEEEE-TTEEEEEEESSC
T ss_pred             EEEEEECCC----------CCcCccCCCCcEEEEEEEEEEEE--CCc-----c--CCCCeEEEeCCCCccccCcCCC
Confidence            455666654          45789999998888999999773  322     3  3899999999999999996443

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.74  E-value=0.00011  Score=49.78  Aligned_cols=42  Identities=31%  Similarity=0.488  Sum_probs=34.1

Q ss_pred             cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL  138 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~  138 (160)
                      .+|+.|||+|++.+...+..    ++.++|||++++|+|..-....
T Consensus        25 ~~E~~~vleG~v~it~~~G~----~~~~~aGD~~~~p~G~~~~w~v   66 (74)
T PF05899_consen   25 EDEFFYVLEGEVTITDEDGE----TVTFKAGDAFFLPKGWTGTWEV   66 (74)
T ss_dssp             SEEEEEEEEEEEEEEETTTE----EEEEETTEEEEE-TTEEEEEEE
T ss_pred             CCEEEEEEEeEEEEEECCCC----EEEEcCCcEEEECCCCEEEEEE
Confidence            49999999999999985332    8999999999999998665543

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.72  E-value=0.00014  Score=56.10  Aligned_cols=84  Identities=23%  Similarity=0.234  Sum_probs=58.7

Q ss_pred             eeeeeeCCCcc-c-CHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374           65 MDLLDLCPEKV-T-NYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        65 ~dvi~v~~~~~-p-~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      .|+++...+.- + .|-+....+|++ +-..+|+-||+||+....+.+.     .+..+|||+|+||.|-.=-|+.... 
T Consensus        89 tdLvt~~~g~~l~aG~m~~~~~tf~w-tl~yDe~d~VlEGrL~V~~~g~-----tv~a~aGDvifiPKgssIefst~ge-  161 (176)
T COG4766          89 TDLVTEQEGSRLGAGLMEMKNTTFPW-TLNYDEIDYVLEGRLHVRIDGR-----TVIAGAGDVIFIPKGSSIEFSTTGE-  161 (176)
T ss_pred             eceeecccCCccccceeeeccccCcc-eecccceeEEEeeeEEEEEcCC-----eEecCCCcEEEecCCCeEEEeccce-
Confidence            45555554320 0 233444445544 3357899999999999999988     9999999999999999888876654 


Q ss_pred             cEEEEEEecCCcc-cCC
Q 031374          143 YVKVMQILSYGVQ-RQS  158 (160)
Q Consensus       143 ~~~~ir~f~~~p~-w~~  158 (160)
                       .+.+  |..-|. |.+
T Consensus       162 -a~fl--yvtyPanWqs  175 (176)
T COG4766         162 -AKFL--YVTYPANWQS  175 (176)
T ss_pred             -EEEE--EEEccccccc
Confidence             4443  555566 754

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=97.66  E-value=0.00014  Score=59.80  Aligned_cols=62  Identities=13%  Similarity=0.203  Sum_probs=47.5

Q ss_pred             cceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC--CcEEEEEEecCC
Q 031374           87 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS--NYVKVMQILSYG  153 (160)
Q Consensus        87 ~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~--~~~~~ir~f~~~  153 (160)
                      ..+-....++.++++|+|.+.+++.     .+.+++||+|++|||+.|.+...++  .......+|...
T Consensus        43 r~~~~~~~~i~~~~~G~~~~~~~~~-----~~~~~~g~~i~i~p~~~h~~~~~~~~~~~~~~~~~~~~~  106 (290)
T PRK10572         43 RPLGMKGYILNLTIRGQGVIFNGGR-----AFVCRPGDLLLFPPGEIHHYGRHPDSDEWYHQWVYFRPR  106 (290)
T ss_pred             cCCCccceEEEEEEeccEEEecCCe-----eEecCCCCEEEECCCCceeeccCCCCCceeEEEEEecCh
Confidence            4455567799999999999999988     9999999999999999999875443  223333445443

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=97.53  E-value=0.00059  Score=51.06  Aligned_cols=65  Identities=15%  Similarity=0.206  Sum_probs=39.4

Q ss_pred             ccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCc-EEEeCCCCeeeeeeCCCCcEEEEEEecCC
Q 031374           86 YTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGD-LIVLPAGIYHRFTLDTSNYVKVMQILSYG  153 (160)
Q Consensus        86 ~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GD-li~iP~g~~H~f~~~~~~~~~~ir~f~~~  153 (160)
                      -..|.|. ..|.++|++|++.+.+.+...+ -++.+...+ .|.||||+.|.+..-+.+ ..+|. ++.+
T Consensus        46 RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv-~as~  112 (131)
T PF05523_consen   46 RGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLV-LASE  112 (131)
T ss_dssp             EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-TT-EEEEE---TT--EEEE-EESS
T ss_pred             ccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEECCchhhHhhccCCC-cEEEE-EcCC
Confidence            5789996 7899999999999999865433 456666554 899999999999876655 33333 4443

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=97.49  E-value=0.00073  Score=51.90  Aligned_cols=54  Identities=28%  Similarity=0.433  Sum_probs=39.7

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      -..|.-+.+|++|.++|.....+-+ +++.-.+.++.||+.++|++++|+-.--+
T Consensus        46 ~DyHine~eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~   99 (151)
T PF06052_consen   46 TDYHINETEEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPA   99 (151)
T ss_dssp             SSEEE-SS-EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-T
T ss_pred             CccccCCcceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCC
Confidence            3679999999999999999999986 46666899999999999999999876543

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>PF12852 Cupin_6: Cupin

Probab=97.43  E-value=0.0003  Score=54.63  Aligned_cols=45  Identities=29%  Similarity=0.556  Sum_probs=37.2

Q ss_pred             ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           94 EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        94 ~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      --+.+|++|++++.+.+.+.   .+.+++||++++|.|..|.+..+..
T Consensus        36 ~~fh~V~~G~~~l~~~~~~~---~~~L~~GDivllp~g~~H~l~~~~~   80 (186)
T PF12852_consen   36 ASFHVVLRGSCWLRVPGGGE---PIRLEAGDIVLLPRGTAHVLSSDPD   80 (186)
T ss_pred             eEEEEEECCeEEEEEcCCCC---eEEecCCCEEEEcCCCCeEeCCCCC
Confidence            45788999999999986111   8999999999999999999965443

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.43  E-value=0.00039  Score=59.05  Aligned_cols=99  Identities=22%  Similarity=0.285  Sum_probs=69.0

Q ss_pred             ChHHHHHHHHhc---CCceeeeeeeCCCcccC--------HHHH--hcCcccceecCcceEEEEeeeeEEEEEecCCCcE
Q 031374           49 NDEELQKIREAR---GYSYMDLLDLCPEKVTN--------YEEK--LKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQW  115 (160)
Q Consensus        49 ~~~~l~~l~~~~---gy~~~dvi~v~~~~~p~--------~~~~--~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~  115 (160)
                      +++.|++|....   -|-+.-+=-++|.+ +.        +-+.  .+.....|.|.+.-|+-|++|+|+..|+++    
T Consensus       225 t~eAL~~la~~e~~dp~dG~~~ryvNP~T-Gg~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~Ig~~----  299 (351)
T COG3435         225 TREALERLARLEEPDPFDGYKMRYVNPVT-GGYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTIIGGE----  299 (351)
T ss_pred             HHHHHHHHHhccCCCCCCcceEEEecCCC-CCCcCchHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEECCE----
Confidence            467788887665   12222222344431 22        1121  134467899999999999999999999999    


Q ss_pred             EEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcc
Q 031374          116 IRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQ  155 (160)
Q Consensus       116 ~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~  155 (160)
                       ++.-.+||+++||.-..|.+.++++..+-+  -|++.|+
T Consensus       300 -rf~~~~~D~fvVPsW~~~~~~~gs~da~LF--sfsD~PV  336 (351)
T COG3435         300 -RFDWSAGDIFVVPSWAWHEHVNGSEDAVLF--SFSDRPV  336 (351)
T ss_pred             -EeeccCCCEEEccCcceeecccCCcceEEE--ecCCcHH
Confidence             999999999999999999999875443322  2666665

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=97.07  E-value=0.0013  Score=48.59  Aligned_cols=47  Identities=23%  Similarity=0.345  Sum_probs=38.7

Q ss_pred             cceec-CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeee
Q 031374           87 TEHIH-ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT  137 (160)
Q Consensus        87 ~~H~H-~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~  137 (160)
                      ..+++ +..|.-+||+|.+.+.-++.+    .+.+++||++++|+|..=.-+
T Consensus        56 ~~r~~y~~~E~chil~G~v~~T~d~Ge----~v~~~aGD~~~~~~G~~g~W~  103 (116)
T COG3450          56 KFRVTYDEDEFCHILEGRVEVTPDGGE----PVEVRAGDSFVFPAGFKGTWE  103 (116)
T ss_pred             cceEEcccceEEEEEeeEEEEECCCCe----EEEEcCCCEEEECCCCeEEEE
Confidence            35665 468999999999999987644    899999999999999876544

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=97.06  E-value=0.0076  Score=42.12  Aligned_cols=71  Identities=14%  Similarity=0.222  Sum_probs=51.0

Q ss_pred             CceeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           62 YSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        62 y~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      +-+...+.|.|+..         --..+.....-++||++|.....|++.     .+.+.+||...||+|-.-.+.+..+
T Consensus        11 ~fa~G~l~Lpp~~~---------K~~k~s~~~~~vF~V~~G~v~Vti~~~-----~f~v~~G~~F~VP~gN~Y~i~N~~~   76 (85)
T PF11699_consen   11 FFASGMLELPPGGE---------KPPKNSRDNTMVFYVIKGKVEVTIHET-----SFVVTKGGSFQVPRGNYYSIKNIGN   76 (85)
T ss_dssp             S-EEEEEEE-TCCC---------EEEEE--SEEEEEEEEESEEEEEETTE-----EEEEETT-EEEE-TT-EEEEEE-SS
T ss_pred             CceeEEEEeCCCCc---------cCCcccCCcEEEEEEEeCEEEEEEcCc-----EEEEeCCCEEEECCCCEEEEEECCC
Confidence            55677888888641         124566778899999999999999988     9999999999999999999998766


Q ss_pred             CcEEE
Q 031374          142 NYVKV  146 (160)
Q Consensus       142 ~~~~~  146 (160)
                      ...+.
T Consensus        77 ~~a~L   81 (85)
T PF11699_consen   77 EEAKL   81 (85)
T ss_dssp             S-EEE
T ss_pred             CcEEE
Confidence            55544

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=96.91  E-value=0.0028  Score=56.10  Aligned_cols=57  Identities=19%  Similarity=0.324  Sum_probs=42.1

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      .+.+|++++.+|++.+.-.-.     .+.+++||+++||.|+.++....+..+..++-.|..
T Consensus       144 aDGD~Li~~q~G~l~l~Te~G-----~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E~~~~  200 (424)
T PF04209_consen  144 ADGDELIFPQQGSLRLETEFG-----RLDVRPGDYVVIPRGTRFRVELPGPARGYIIENFGS  200 (424)
T ss_dssp             SSEEEEEEEEES-EEEEETTE-----EEEE-TTEEEEE-TT--EEEE-SSSEEEEEEEEES-
T ss_pred             CCCCEEEEEEECCEEEEecCe-----eEEEcCCeEEEECCeeEEEEEeCCCceEEEEEcCCC
Confidence            467999999999999998866     899999999999999999999886556666665543

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=96.59  E-value=0.01  Score=52.63  Aligned_cols=56  Identities=13%  Similarity=0.216  Sum_probs=48.1

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      .+.|+++++.+|++.+.-.-.     .+.+++||+++||.|+.++....+..+..++-.|.
T Consensus       146 aDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g  201 (429)
T TIGR01015       146 ADGDFLIVPQQGALLITTEFG-----RLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG  201 (429)
T ss_pred             cCCCEEEEEEeCcEEEEEecc-----ceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence            467999999999999999866     89999999999999999999987555666666665

Missing in human disease alkaptonuria.

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=96.56  E-value=0.008  Score=49.54  Aligned_cols=50  Identities=14%  Similarity=0.141  Sum_probs=40.8

Q ss_pred             cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEE
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM  147 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~i  147 (160)
                      ..-+.++++|++.+.+++.     .+.+.+||++++|++.+|.+..........+
T Consensus        71 ~~~l~~~~~G~~~~~~~g~-----~~~l~~G~~~l~~~~~p~~~~~~~~~~~~~l  120 (302)
T PRK09685         71 HFFTVFQLSGHAIIEQDDR-----QVQLAAGDITLIDASRPCSIYPQGLSEQISL  120 (302)
T ss_pred             cEEEEEEecceEEEEECCe-----EEEEcCCCEEEEECCCCcEeecCCCceeEEE
Confidence            4567788999999999988     8999999999999999998876554333333

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=96.49  E-value=0.025  Score=42.29  Aligned_cols=60  Identities=23%  Similarity=0.324  Sum_probs=49.6

Q ss_pred             ceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           88 EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        88 ~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      .|.-..-|..||++|+|....-+. ++  .+.++||.+..+...-.|...+.+  .++++.+|..
T Consensus        50 ~~YknHlEAvyci~G~Gev~~~~~-G~--~~~i~pGt~YaLd~hD~H~lra~~--dm~~vCVFnP  109 (126)
T PF06339_consen   50 IHYKNHLEAVYCIEGEGEVEDLDT-GE--VHPIKPGTMYALDKHDRHYLRAKT--DMRLVCVFNP  109 (126)
T ss_pred             EEecCceEEEEEEeceEEEEEccC-Cc--EEEcCCCeEEecCCCccEEEEecC--CEEEEEEcCC
Confidence            344456799999999999888632 22  788999999999999999999988  7888888875

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=96.39  E-value=0.016  Score=51.53  Aligned_cols=56  Identities=16%  Similarity=0.172  Sum_probs=46.6

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC-CCcEEEEEEec
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT-SNYVKVMQILS  151 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~-~~~~~~ir~f~  151 (160)
                      .+.|+++++.+|++.+.-.-.     .+.+++||+++||.|+.++..+.+ ..+..++-.|.
T Consensus       152 aDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~~g  208 (438)
T PRK05341        152 ADGELLIVPQQGRLRLATELG-----VLDVEPGEIAVIPRGVKFRVELPDGPARGYVCENYG  208 (438)
T ss_pred             CCCCEEEEEEeCCEEEEEecc-----ceEecCCCEEEEcCccEEEEecCCCCeeEEEEEecC
Confidence            457999999999999999866     899999999999999999999643 45555665555

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=96.26  E-value=0.0092  Score=48.78  Aligned_cols=69  Identities=20%  Similarity=0.316  Sum_probs=52.8

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcE
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYV  144 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~  144 (160)
                      .-+++..|+..=-|         --+|-.+-=.|||+|+|.|.++..     .+.|++||+|.+-|-.+.+..++....|
T Consensus       184 v~ivsFePGa~ip~---------aEtHvmEHGlyvLeGk~vYrLn~d-----wv~V~aGD~mwm~A~cpQacyagG~g~f  249 (264)
T COG3257         184 VHIVSFEPGASIPY---------AETHVMEHGLYVLEGKGVYRLNNN-----WVPVEAGDYIWMGAYCPQACYAGGRGAF  249 (264)
T ss_pred             EEEEEecCCcccch---------hhhhhhhcceEEEecceEEeecCc-----eEEeecccEEEeeccChhhhccCCCCce
Confidence            45667776632111         124445556899999999999965     8999999999999999999988777777


Q ss_pred             EEE
Q 031374          145 KVM  147 (160)
Q Consensus       145 ~~i  147 (160)
                      +-|
T Consensus       250 rYL  252 (264)
T COG3257         250 RYL  252 (264)
T ss_pred             EEE
Confidence            766

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=96.26  E-value=0.022  Score=42.26  Aligned_cols=52  Identities=17%  Similarity=0.252  Sum_probs=45.8

Q ss_pred             cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      ..-+.+.++|++.+..++.     .+.+.|||+++++++.+..+...+......+++
T Consensus        55 ~~~l~~~~~G~~~~~~~g~-----~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~i  106 (172)
T PF14525_consen   55 HYLLVLPLSGSARIEQGGR-----EVELAPGDVVLLDPGQPYRLEFSAGCRQLSLRI  106 (172)
T ss_pred             EEEEEEEccCCEEEEECCE-----EEEEcCCeEEEEcCCCCEEEEECCCccEEEEEE
Confidence            4567888899999999988     999999999999999999999887777777766

>PLN02658 homogentisate 1,2-dioxygenase

Probab=96.17  E-value=0.023  Score=50.48  Aligned_cols=56  Identities=16%  Similarity=0.318  Sum_probs=46.9

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeee-CCCCcEEEEEEec
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL-DTSNYVKVMQILS  151 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~-~~~~~~~~ir~f~  151 (160)
                      .+.|+++++.+|++.+.-.-.     .+.+++||+++||.|+.++..+ ++..+..++-.|.
T Consensus       145 aDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~g  201 (435)
T PLN02658        145 ADGDFLIVPQQGRLWIKTELG-----KLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIFG  201 (435)
T ss_pred             CCCCEEEEEEeCCEEEEEecc-----ceEecCCCEEEecCccEEEEecCCCCeeEEEEeecC
Confidence            467999999999999998866     8999999999999999999997 4445566666663

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=96.08  E-value=0.014  Score=41.17  Aligned_cols=29  Identities=24%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             CcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374          113 DQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus       113 ~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      -+.+++..++||+|++|||.+|+..+...
T Consensus        78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~  106 (114)
T PF02373_consen   78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGD  106 (114)
T ss_dssp             S--EEEEEETT-EEEE-TT-EEEEEESSS
T ss_pred             cccccceECCCCEEEECCCceEEEEeCCc
Confidence            35568889999999999999999766553

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=96.07  E-value=0.026  Score=46.25  Aligned_cols=46  Identities=13%  Similarity=0.180  Sum_probs=40.6

Q ss_pred             cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~  143 (160)
                      .+-+.||++|+....+.++     ...+.+|+...+|||..|.+++..+..
T Consensus        83 ae~~lfVv~Ge~tv~~~G~-----th~l~eggyaylPpgs~~~~~N~~~~~  128 (264)
T COG3257          83 AETFLFVVSGEITVKAEGK-----THALREGGYAYLPPGSGWTLRNAQKED  128 (264)
T ss_pred             ceEEEEEEeeeEEEEEcCe-----EEEeccCCeEEeCCCCcceEeeccCCc
Confidence            3568999999999999999     999999999999999999999655433

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=95.63  E-value=0.068  Score=38.80  Aligned_cols=63  Identities=25%  Similarity=0.274  Sum_probs=45.8

Q ss_pred             CcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCC--CeeeeeeCCC-CcEEEEEEe
Q 031374           84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTLDTS-NYVKVMQIL  150 (160)
Q Consensus        84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g--~~H~f~~~~~-~~~~~ir~f  150 (160)
                      .-+..|-|. .+-|.|+++|+....-. .++   .-.+++||+-.+-||  +.|.-.+.+. ..+..++++
T Consensus        40 ~gf~~HPH~g~eivTyv~~G~~~H~Ds-~G~---~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQlW  106 (107)
T PF02678_consen   40 AGFPMHPHRGFEIVTYVLEGELRHRDS-LGN---RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQLW  106 (107)
T ss_dssp             TEEEEEEECSEEEEEEEEESEEEEEET-TSE---EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEEE
T ss_pred             CCCCCcCCCCceEEEEEecCEEEEECC-CCC---eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEEc
Confidence            346899997 57788999999876643 222   678999999777765  8998776655 778888876

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=95.43  E-value=0.15  Score=40.12  Aligned_cols=60  Identities=18%  Similarity=0.402  Sum_probs=44.5

Q ss_pred             cCcccceecCc----ceEEEEeeeeEEEEEec--CC----CcEEEEEEcCCc--EEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIHAD----EEIRYCLEGSGYFDVRD--ES----DQWIRIWIKAGD--LIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H~~----~Ei~yvl~G~g~f~i~~--~~----~~~~~~~v~~GD--li~iP~g~~H~f~~~~~~  142 (160)
                      +.....|.|..    ..+..|+.|+..--+-|  ++    ++|..+.+.+++  .|.||+|..|.|..-++.
T Consensus        53 gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~  124 (176)
T PF00908_consen   53 GVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD  124 (176)
T ss_dssp             TBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE
T ss_pred             cEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc
Confidence            45556777753    58999999988655543  21    789999998887  699999999999876654

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=95.31  E-value=0.051  Score=43.01  Aligned_cols=69  Identities=13%  Similarity=0.234  Sum_probs=44.3

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecC---------C--------------------------CcEEEEEEcCCcEEEe
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDE---------S--------------------------DQWIRIWIKAGDLIVL  128 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~---------~--------------------------~~~~~~~v~~GDli~i  128 (160)
                      .....|....+=+..++.|+=.+.+-..         .                          -..+.+.++|||+|+|
T Consensus       142 s~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l~pGD~Lfi  221 (251)
T PF13621_consen  142 SFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVLEPGDVLFI  221 (251)
T ss_dssp             EEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEEETT-EEEE
T ss_pred             ceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEECCCeEEEE
Confidence            3455666566677788888877776211         0                          1478999999999999


Q ss_pred             CCCCeeeeeeC-CCC-cEEEEEEecC
Q 031374          129 PAGIYHRFTLD-TSN-YVKVMQILSY  152 (160)
Q Consensus       129 P~g~~H~f~~~-~~~-~~~~ir~f~~  152 (160)
                      |+|-.|...+. +++ .+.+-..|..
T Consensus       222 P~gWwH~V~~~~~~~~sisvn~w~~~  247 (251)
T PF13621_consen  222 PPGWWHQVENLSDDDLSISVNYWFRT  247 (251)
T ss_dssp             -TT-EEEEEESTTSSCEEEEEEEEES
T ss_pred             CCCCeEEEEEcCCCCeEEEEEEEecc
Confidence            99999999987 333 5555444543

...

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=95.25  E-value=0.19  Score=39.49  Aligned_cols=60  Identities=18%  Similarity=0.330  Sum_probs=46.9

Q ss_pred             cCcccceec---CcceEEEEeeeeEEEEEecC---C---CcEEEEEEcC--CcEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIH---ADEEIRYCLEGSGYFDVRDE---S---DQWIRIWIKA--GDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H---~~~Ei~yvl~G~g~f~i~~~---~---~~~~~~~v~~--GDli~iP~g~~H~f~~~~~~  142 (160)
                      +.....|.|   .+..+..|+.|+..--+-|.   .   ++|..+.+.+  +-.|.||+|..|.|.+-+++
T Consensus        54 gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~  124 (176)
T TIGR01221        54 GVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE  124 (176)
T ss_pred             CEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC
Confidence            556677876   47899999999987655442   1   6799999988  55999999999999875544

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=95.14  E-value=0.054  Score=47.28  Aligned_cols=55  Identities=22%  Similarity=0.370  Sum_probs=45.8

Q ss_pred             CcceEEEEeeeeEEEEEe-cCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           92 ADEEIRYCLEGSGYFDVR-DESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        92 ~~~Ei~yvl~G~g~f~i~-~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      +..-|+.|++|+|+.... +.     .+.+++||+++|||+..=.+..+++. +...|-|..
T Consensus       352 ~~~SIllv~~G~g~l~~~t~~-----~~~v~rG~V~fI~a~~~i~~~~~sd~-~~~yrAf~~  407 (411)
T KOG2757|consen  352 DGPSILLVLKGSGILKTDTDS-----KILVNRGDVLFIPANHPIHLSSSSDP-FLGYRAFSN  407 (411)
T ss_pred             CCceEEEEEecceEEecCCCC-----ceeeccCcEEEEcCCCCceeeccCcc-eeeeecccc
Confidence            346789999999999998 55     89999999999999998888877654 777776664

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=94.95  E-value=0.18  Score=42.82  Aligned_cols=56  Identities=18%  Similarity=0.335  Sum_probs=39.7

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCC------------------CcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDES------------------DQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~------------------~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      -+..|+=+.+=+..-++|+=...|....                  .....+.++|||+|.||+|..|...+.+
T Consensus       127 g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~  200 (319)
T PF08007_consen  127 GFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTD  200 (319)
T ss_dssp             ESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS
T ss_pred             CccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCCC
Confidence            3577777778888889999999997610                  2366899999999999999999998877

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]

Probab=94.54  E-value=0.052  Score=44.28  Aligned_cols=66  Identities=23%  Similarity=0.374  Sum_probs=52.5

Q ss_pred             cceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeee---eeeC---------CCCcEEEEEEecCC
Q 031374           87 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHR---FTLD---------TSNYVKVMQILSYG  153 (160)
Q Consensus        87 ~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~---f~~~---------~~~~~~~ir~f~~~  153 (160)
                      ..|..+.+|++|-++|.....+-++ ++.=.+.++.||+.++|++++|+   |..+         .+..+-++|++.+.
T Consensus        47 dyHieegeE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqRFantvGlVVEr~R~~tE~D~iR~yvg~  124 (279)
T KOG3995|consen   47 DYHIEEGEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETELDGLRYYVGD  124 (279)
T ss_pred             ccccCCcchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhhhccceeEEEEeccCCCccceEEEEecc
Confidence            5788889999999999999999854 44447999999999999999995   4322         34567788887664

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.91  E-value=0.29  Score=42.77  Aligned_cols=46  Identities=17%  Similarity=0.260  Sum_probs=40.7

Q ss_pred             CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374           92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      +.+|++++..|+..+...-.     .+.|++||+.+||.|+.-+.+.-++.
T Consensus       145 Dge~Livpq~G~l~l~te~G-----~l~v~pgeiavIPRG~~frve~~~~~  190 (427)
T COG3508         145 DGELLIVPQQGELRLKTELG-----VLEVEPGEIAVIPRGTTFRVELKDGE  190 (427)
T ss_pred             CCCEEEEeecceEEEEEeec-----eEEecCCcEEEeeCCceEEEEecCCc
Confidence            46899999999999998866     89999999999999999999875554

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=93.39  E-value=0.085  Score=43.85  Aligned_cols=53  Identities=23%  Similarity=0.274  Sum_probs=31.8

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      -.+.|+|..++-.||++|....  ++.  +=-...+.+|.+...|+|..|.-.+.+.
T Consensus        48 ~~pph~H~~~~~~~Vi~G~~~~--~~~--~a~~~~l~~Gsy~~~PaG~~h~~~~~~~  100 (251)
T PF14499_consen   48 SSPPHIHNADYRGTVISGELHN--GDP--KAAAMWLPAGSYWFQPAGEPHITAAEGE  100 (251)
T ss_dssp             EE--BEESS-EEEEEEESEEEE--TTE--E-----E-TTEEEEE-TT-EEEETTS-E
T ss_pred             cCCCcceeeeEEEEEEEeEEEc--CCC--cccceecCCCceEeccCCCceeeeccCc
Confidence            3589999999999999997554  322  1013569999999999998887655443

>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length

Probab=93.33  E-value=0.19  Score=41.06  Aligned_cols=26  Identities=35%  Similarity=0.716  Sum_probs=19.2

Q ss_pred             EEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374          117 RIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus       117 ~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      .+.++||.-|.|+||++|+|...++.
T Consensus       155 ~l~L~PGESiTL~Pg~yH~Fw~e~g~  180 (225)
T PF07385_consen  155 QLRLNPGESITLPPGIYHWFWGEGGD  180 (225)
T ss_dssp             EEEE-TT-EEEE-TTEEEEEEE-TTS
T ss_pred             eEEeCCCCeEeeCCCCeeeEEecCCC
Confidence            46889999999999999999987655

The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=93.15  E-value=0.8  Score=36.07  Aligned_cols=61  Identities=15%  Similarity=0.281  Sum_probs=47.7

Q ss_pred             cCcccceecC-c-ceEEEEeeeeEEEEEecC-C-----CcEEEEEEcCC--cEEEeCCCCeeeeeeCCCCc
Q 031374           83 KNFYTEHIHA-D-EEIRYCLEGSGYFDVRDE-S-----DQWIRIWIKAG--DLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        83 ~~~~~~H~H~-~-~Ei~yvl~G~g~f~i~~~-~-----~~~~~~~v~~G--Dli~iP~g~~H~f~~~~~~~  143 (160)
                      +..-..|.|. . .++..|+.|+...-+-+- .     ++|..+.+.+-  -.|.||+|..|.|.+-++..
T Consensus        55 GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~  125 (173)
T COG1898          55 GVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA  125 (173)
T ss_pred             CeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce
Confidence            4556788885 4 899999999987666542 2     35999999876  78999999999999766654

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=92.94  E-value=0.22  Score=41.52  Aligned_cols=53  Identities=30%  Similarity=0.538  Sum_probs=31.4

Q ss_pred             cccceecCc---------ceEEEEe-e---eeEEEEEecC-CCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374           85 FYTEHIHAD---------EEIRYCL-E---GSGYFDVRDE-SDQWIRIWIKAGDLIVLPAGIYHRFTL  138 (160)
Q Consensus        85 ~~~~H~H~~---------~Ei~yvl-~---G~g~f~i~~~-~~~~~~~~v~~GDli~iP~g~~H~f~~  138 (160)
                      -++.|.|+.         +|++|+. .   |-|.-.+-.. ...=-.+.|+-||+++||.| +|..-+
T Consensus       165 SyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~~V~~~d~V~iP~g-yHp~~a  231 (261)
T PF04962_consen  165 SYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHYVVRNGDAVLIPSG-YHPVVA  231 (261)
T ss_dssp             S-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEEEEETTEEEEESTT-B-SEEE
T ss_pred             CcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEEEEECCCEEEeCCC-CCCcCc
Confidence            378999998         8999983 2   4343222211 10111678999999999999 775443

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=92.22  E-value=0.43  Score=41.91  Aligned_cols=42  Identities=17%  Similarity=0.290  Sum_probs=34.3

Q ss_pred             CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374           92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL  138 (160)
Q Consensus        92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~  138 (160)
                      ....|..|++|++.+..++.     ++.+++|+.++||++.......
T Consensus       338 ~~~~Illv~~G~~~i~~~~~-----~~~l~~G~~~fipa~~~~~~~~  379 (389)
T PRK15131        338 QSAAILFCVEGEAVLWKGEQ-----QLTLKPGESAFIAANESPVTVS  379 (389)
T ss_pred             CCcEEEEEEcceEEEEeCCe-----EEEECCCCEEEEeCCCccEEEe
Confidence            35689999999999876655     7899999999999987665433

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=92.10  E-value=0.42  Score=40.22  Aligned_cols=40  Identities=25%  Similarity=0.290  Sum_probs=33.5

Q ss_pred             CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeee
Q 031374           92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF  136 (160)
Q Consensus        92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f  136 (160)
                      ....+..|++|++....++.     .+.+++|+.++|||+.....
T Consensus       252 ~~~~il~v~~G~~~i~~~~~-----~~~l~~G~~~~ipa~~~~~~  291 (302)
T TIGR00218       252 QSALILSVLEGSGRIKSGGK-----TLPLKKGESFFIPAHLGPFT  291 (302)
T ss_pred             CCcEEEEEEcceEEEEECCE-----EEEEecccEEEEccCCccEE
Confidence            45789999999999877655     79999999999999986543

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=91.88  E-value=0.48  Score=40.58  Aligned_cols=45  Identities=20%  Similarity=0.183  Sum_probs=37.8

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      +....|.+|++|++....+++     .+.+++|+-++||+...-+.-.+.
T Consensus       258 ~~~~~il~v~eG~~~l~~~~~-----~~~l~~G~s~~ipa~~~~~~i~g~  302 (312)
T COG1482         258 QESFSILLVLEGEGTLIGGGQ-----TLKLKKGESFFIPANDGPYTIEGE  302 (312)
T ss_pred             CCCcEEEEEEcCeEEEecCCE-----EEEEcCCcEEEEEcCCCcEEEEec
Confidence            347899999999999999987     999999999999999665544333

>COG1741 Pirin-related protein [General function prediction only]

Probab=91.38  E-value=0.8  Score=38.55  Aligned_cols=71  Identities=21%  Similarity=0.210  Sum_probs=55.4

Q ss_pred             cCcccceecCc-ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCC--Ceeeeee--CCCCcEEEEEEecCCcccC
Q 031374           83 KNFYTEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTL--DTSNYVKVMQILSYGVQRQ  157 (160)
Q Consensus        83 ~~~~~~H~H~~-~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g--~~H~f~~--~~~~~~~~ir~f~~~p~w~  157 (160)
                      +..+..|-|.. +-|-|+++|+....-...+    .-.+.|||+-..-||  +.|+-.+  .+...+..+.++..-|.+.
T Consensus        54 G~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn----~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~lP~~~  129 (276)
T COG1741          54 GRGFPPHPHRGLETVTYVLDGEIEHRDSLGN----KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNLPAAD  129 (276)
T ss_pred             CCcCCCCCCCCcEEEEEEEccEEEEeecCCc----eeeecccceeEEcCCCceeecccCCccCCCccceeeeecCCchhh
Confidence            34689999975 6788999999888776433    678899999888876  8898554  3666899999988876553

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A

Probab=91.38  E-value=0.65  Score=32.54  Aligned_cols=59  Identities=19%  Similarity=0.361  Sum_probs=30.2

Q ss_pred             cCcccceecCc---ceEEEEe----eeeEEEEEec----------------CCCcEEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374           83 KNFYTEHIHAD---EEIRYCL----EGSGYFDVRD----------------ESDQWIRIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus        83 ~~~~~~H~H~~---~Ei~yvl----~G~g~f~i~~----------------~~~~~~~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      +.+...|.|..   -=++|+-    .|...|.-..                .....+.+..++||+|+.|+.+.|.....
T Consensus        10 g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H~v~p~   89 (101)
T PF13759_consen   10 GGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWHGVPPN   89 (101)
T ss_dssp             T--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEEEE---
T ss_pred             CCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEEeccCc
Confidence            45668899975   3556653    2333333211                11347889999999999999999998754


Q ss_pred             CC
Q 031374          140 TS  141 (160)
Q Consensus       140 ~~  141 (160)
                      ..
T Consensus        90 ~~   91 (101)
T PF13759_consen   90 NS   91 (101)
T ss_dssp             -S
T ss_pred             CC
Confidence            33

>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]

Probab=91.22  E-value=0.36  Score=38.85  Aligned_cols=27  Identities=30%  Similarity=0.667  Sum_probs=23.8

Q ss_pred             EEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374          116 IRIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus       116 ~~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      -.+.++||.-|.+|||++|+|-+..+.
T Consensus       153 ~~lkL~PGesitL~Pg~~HsFwae~g~  179 (225)
T COG3822         153 SQLKLSPGESITLPPGLYHSFWAEEGG  179 (225)
T ss_pred             eeEEECCCCcEecCCCceeeeeecCCc
Confidence            368899999999999999999887654

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=89.67  E-value=2.3  Score=35.27  Aligned_cols=69  Identities=12%  Similarity=0.048  Sum_probs=47.8

Q ss_pred             HhcCcccceecC--cceEEEEeeeeEEEEEecCCCcE-EEE-EEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           81 KLKNFYTEHIHA--DEEIRYCLEGSGYFDVRDESDQW-IRI-WIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        81 ~~~~~~~~H~H~--~~Ei~yvl~G~g~f~i~~~~~~~-~~~-~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      ..+.+...|.|.  -.|.+-|++|+..|.+-++++.. -+. ....++.-+|||+..|+....+.+--.-+.|
T Consensus        19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~f   91 (287)
T PRK12335         19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSF   91 (287)
T ss_pred             chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEE
Confidence            446788899995  47999999999999887655542 223 3444556579999999998765443333333

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=89.39  E-value=0.3  Score=41.81  Aligned_cols=23  Identities=35%  Similarity=0.637  Sum_probs=20.5

Q ss_pred             EEEEcCCcEEEeCCCCeeeeeeC
Q 031374          117 RIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus       117 ~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      ++.++|||+++||||++|.+..+
T Consensus       159 ~v~lkpGe~~fl~Agt~HA~~~G  181 (312)
T COG1482         159 RVKLKPGEAFFLPAGTPHAYLKG  181 (312)
T ss_pred             EEecCCCCEEEecCCCceeeccc
Confidence            79999999999999999987543

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=89.15  E-value=2  Score=30.63  Aligned_cols=51  Identities=16%  Similarity=0.199  Sum_probs=35.6

Q ss_pred             ceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           88 EHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        88 ~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      .+..+ ..|+.-|++|++...+.+.+ .|  ....+|+...||++..-.......
T Consensus        35 Y~F~T~~~E~M~vvsG~l~V~lpg~~-ew--~~~~aGesF~VpanssF~v~v~~~   86 (94)
T PF06865_consen   35 YTFGTSAPERMEVVSGELEVKLPGED-EW--QTYSAGESFEVPANSSFDVKVKEP   86 (94)
T ss_dssp             EEEEESS-EEEEEEESEEEEEETT-S-S---EEEETT-EEEE-TTEEEEEEESS-
T ss_pred             EEEcCCCCEEEEEEEeEEEEEcCCCc-cc--EEeCCCCeEEECCCCeEEEEECcc
Confidence            34443 57999999999999999754 44  566799999999998877776543

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>PRK10579 hypothetical protein; Provisional

Probab=89.15  E-value=2.6  Score=30.05  Aligned_cols=46  Identities=13%  Similarity=0.167  Sum_probs=37.7

Q ss_pred             cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      ..|+.=|++|++...+.+.++   .....+|+-..||++..-.......
T Consensus        41 ~~E~MeivsG~l~V~Lpg~~e---w~~~~aG~sF~VpanssF~l~v~~~   86 (94)
T PRK10579         41 EPEEMTVISGALNVLLPGATD---WQVYEAGEVFNVPGHSEFHLQVAEP   86 (94)
T ss_pred             CcEEEEEEeeEEEEECCCCcc---cEEeCCCCEEEECCCCeEEEEECcc
Confidence            569999999999999997543   4667899999999998877766543

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=89.09  E-value=0.21  Score=42.02  Aligned_cols=20  Identities=40%  Similarity=0.810  Sum_probs=18.7

Q ss_pred             EEEEcCCcEEEeCCCCeeee
Q 031374          117 RIWIKAGDLIVLPAGIYHRF  136 (160)
Q Consensus       117 ~~~v~~GDli~iP~g~~H~f  136 (160)
                      .+.+++||.|+||||+.|..
T Consensus       152 ~v~v~~Gd~i~ipaGt~HA~  171 (302)
T TIGR00218       152 RIKLKPGDFFYVPSGTPHAY  171 (302)
T ss_pred             ccccCCCCEEEeCCCCcccc
Confidence            68999999999999999984

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=87.46  E-value=3.7  Score=28.35  Aligned_cols=48  Identities=25%  Similarity=0.195  Sum_probs=36.8

Q ss_pred             ceEEEEeeeeEEEEEecCCCc--EEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           94 EEIRYCLEGSGYFDVRDESDQ--WIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        94 ~Ei~yvl~G~g~f~i~~~~~~--~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      -..+-|++|+..|..-+.++.  --.+.+.+|+.-+|+|...|+...-+.
T Consensus        26 Wg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~   75 (82)
T PF09313_consen   26 WGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD   75 (82)
T ss_dssp             EEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred             EEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence            577889999999999876432  236789999999999999999986543

; PDB: 3BB6_C 3M70_A 3DL3_I.

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=86.48  E-value=0.62  Score=40.96  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=21.3

Q ss_pred             EEEEcCCcEEEeCCCCeeeeeeCC
Q 031374          117 RIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus       117 ~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      .+.++|||.|+||||+.|.+-.+.
T Consensus       238 ~v~l~pGeaifipAg~~HAyl~G~  261 (389)
T PRK15131        238 VVKLNPGEAMFLFAETPHAYLQGV  261 (389)
T ss_pred             EEEeCCCCEEEeCCCCCeEEcCCe
Confidence            799999999999999999876543

>PHA02890 hypothetical protein; Provisional

Probab=85.89  E-value=4.6  Score=33.87  Aligned_cols=57  Identities=18%  Similarity=0.200  Sum_probs=45.4

Q ss_pred             EEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCc
Q 031374           96 IRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV  154 (160)
Q Consensus        96 i~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p  154 (160)
                      +..|++|++...+. .+|+-+...+.+||.+++.-++.|.... .+-.+..+++=++.|
T Consensus        95 FVlCL~Gs~~In~~-~~d~~iS~~I~kGeaF~mdv~t~H~i~T-Knl~L~Viky~vd~p  151 (278)
T PHA02890         95 FVACIEGSCKINVN-IGDREISDHIHENQGFIMDVGLDHAIDS-DNVGLFITKFEVDAH  151 (278)
T ss_pred             EEEEeCCeEEEEEe-cCCceeeeeeecCceEEEEccceEEEEc-cceeEEEEEEEecce
Confidence            34568999999998 5678889999999999999999999877 555566666655544

>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators

Probab=84.97  E-value=7.4  Score=29.44  Aligned_cols=56  Identities=14%  Similarity=0.105  Sum_probs=47.1

Q ss_pred             CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeee---eeCCCCcEEEEEEecC
Q 031374           92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF---TLDTSNYVKVMQILSY  152 (160)
Q Consensus        92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f---~~~~~~~~~~ir~f~~  152 (160)
                      ..-=+.+|+.|+=...++++     .+...+|++++.+.+++=..   .++++..+.++++.-+
T Consensus        22 y~p~i~~vlQG~K~~~~g~~-----~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ld   80 (155)
T PF06719_consen   22 YEPSICIVLQGSKRVHLGDQ-----VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLELD   80 (155)
T ss_pred             cCCeEEEEEeeeEEEEECCc-----eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEEcC
Confidence            34567899999999999988     89999999999999987653   4678888999988544

In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.

>PHA02984 hypothetical protein; Provisional

Probab=84.38  E-value=5.3  Score=33.68  Aligned_cols=58  Identities=19%  Similarity=0.130  Sum_probs=45.2

Q ss_pred             EEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC-CCCcEEEEEEecCCc
Q 031374           96 IRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD-TSNYVKVMQILSYGV  154 (160)
Q Consensus        96 i~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~-~~~~~~~ir~f~~~p  154 (160)
                      +..|++|++...+. .+++-+...+++|+.+++.-++.|..... .+-.+..+++-++.|
T Consensus        96 FvlCl~G~~~I~~~-~~~~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~Vi~y~v~~p  154 (286)
T PHA02984         96 FVLCLNGKTSIECF-NKGSKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLAVITYTSNCP  154 (286)
T ss_pred             EEEEcCCeEEEEEe-cCCceeeeEEecCceEEEEccceEEEEeCCCceEEEEEEEEecce
Confidence            44578999999998 45778899999999999999999997754 445555666555554

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=83.75  E-value=3.5  Score=29.12  Aligned_cols=53  Identities=28%  Similarity=0.305  Sum_probs=35.8

Q ss_pred             cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCc
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV  154 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p  154 (160)
                      ..=..|+++|++.  +++.     ...+.+|+++++..|..=.+++++ ...++| |+.++|
T Consensus        20 ~~~~iyv~~G~~~--v~~~-----~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~l-ll~GeP   72 (104)
T PF05726_consen   20 HNAFIYVLEGSVE--VGGE-----EDPLEAGQLVVLEDGDEIELTAGE-EGARFL-LLGGEP   72 (104)
T ss_dssp             -EEEEEEEESEEE--ETTT-----TEEEETTEEEEE-SECEEEEEESS-SSEEEE-EEEE--
T ss_pred             CEEEEEEEECcEE--ECCC-----cceECCCcEEEECCCceEEEEECC-CCcEEE-EEEccC
Confidence            5678999999964  6655     478999999999977777777774 344444 455544

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes

Probab=82.48  E-value=18  Score=27.28  Aligned_cols=62  Identities=19%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             CcccceecCcceEEEEeee-eEEEEEecCCCcEEEEEEcC----Cc--EEEeCCCCeeeeeeCCCCcEE
Q 031374           84 NFYTEHIHADEEIRYCLEG-SGYFDVRDESDQWIRIWIKA----GD--LIVLPAGIYHRFTLDTSNYVK  145 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G-~g~f~i~~~~~~~~~~~v~~----GD--li~iP~g~~H~f~~~~~~~~~  145 (160)
                      .+...|.=..+|+.+...| ...+.+-+.++++-++.+.+    |.  .++||+|+.......+...+.
T Consensus        52 ~~S~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~y~  120 (139)
T PF06172_consen   52 EFSAWHRVDSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGDYS  120 (139)
T ss_dssp             BEEEEEEESSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSSEE
T ss_pred             CCCccEEcCCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCCEE
Confidence            3445555568999999998 66777776788888877754    43  489999999988654444433

; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=80.90  E-value=0.88  Score=37.85  Aligned_cols=61  Identities=18%  Similarity=0.182  Sum_probs=34.4

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      ...|+|...|=.||++|+..+...+..+   .-.+.+|-.+..|+++.|....++..-+-.||.
T Consensus       184 g~i~~h~~~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~~~~H~~~~~e~~~vlyIRt  244 (251)
T PF14499_consen  184 GRIHTHASNERAVVISGELDYQSYGASN---FGTLDPGSYFGSPGHITHGIFITEDECVLYIRT  244 (251)
T ss_dssp             -SEEE--S-EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--E------EESS-EEEEEEE
T ss_pred             CceeccCCceEEEEEEeEEEEeecccCC---CccccCCcccccCCcccccccccCCCEEEEEEE
Confidence            5789999999999999999995532211   578899999999999999976555555556664

>PLN02288 mannose-6-phosphate isomerase

Probab=80.72  E-value=2.6  Score=37.21  Aligned_cols=39  Identities=23%  Similarity=0.377  Sum_probs=30.3

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCC
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGI  132 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~  132 (160)
                      .....|..|++|++++...+.+   ..+.+++|+.++||++.
T Consensus       352 ~~gp~Illv~~G~~~i~~~~~~---~~~~l~~G~~~fv~a~~  390 (394)
T PLN02288        352 VPGPSVFLVIEGEGVLSTGSSE---DGTAAKRGDVFFVPAGT  390 (394)
T ss_pred             CCCCEEEEEEcCEEEEecCCcc---ceEEEeceeEEEEeCCC
Confidence            3456899999999998665431   13679999999999975

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=80.29  E-value=13  Score=28.51  Aligned_cols=57  Identities=23%  Similarity=0.303  Sum_probs=36.1

Q ss_pred             cceEEEEeeeeEEEEEecCCC-cEEEEEEcCCcEEEeC----CCCeeeeeeCCCCcEEEEEE
Q 031374           93 DEEIRYCLEGSGYFDVRDESD-QWIRIWIKAGDLIVLP----AGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~-~~~~~~v~~GDli~iP----~g~~H~f~~~~~~~~~~ir~  149 (160)
                      ...+++|++|.......+.++ ..+...+.+||++-..    .+..+.++......+.++.+
T Consensus        38 ~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i   99 (211)
T PRK11753         38 AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI   99 (211)
T ss_pred             CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEE
Confidence            457999999999887765554 4666678999997433    23344444433344444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
1vr3_A	191	Crystal Structure Of Acireductone Dioxygenase (1354		2e-49
1zrr_A	179	Residual Dipolar Coupling Refinement Of Acireducton		5e-05

>pdb|1VR3|A Chain A, Crystal Structure Of Acireductone Dioxygenase (13543033) From Mus Musculus At 2.06 A Resolution Length = 191

Iteration: 1
 Score =  191 bits (484), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 111/148 (75%)
Query: 3   LEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGY 62
           ++AW+ DES+ D R PH   P + VSL+QL  LGVLYW+L+   YEND EL+KIR+ R Y
Sbjct: 14  VQAWYXDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKXRNY 73
Query: 63  SYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKA 122
           S+ D++ +C + + NYEEK+K F+ EH+H DEEIRY LEGSGYFDVRD+ D+WIRI  + 
Sbjct: 74  SWXDIITICKDTLPNYEEKIKXFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISXEK 133
Query: 123 GDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
           GD I LPAGIYHRFTLD  NYVK  ++ 
Sbjct: 134 GDXITLPAGIYHRFTLDEKNYVKAXRLF 161

>pdb|1ZRR|A Chain A, Residual Dipolar Coupling Refinement Of Acireductone Dioxygenase From Klebsiella Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 53  LQKIREARGYSYMDLLDL---CPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVR 109
           + K+   +GY   D++ L    P+K    E   + F  EH H ++E+R+ +EG+G F + 
Sbjct: 61  IDKLVAEKGYQSWDVISLRADNPQK----EALREKFLNEHTHGEDEVRFFVEGAGLFCLH 116
Query: 110 DESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL 150
              D+  ++  +  DLI +PA   H F + +      ++I 
Sbjct: 117 I-GDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIF 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	2e-65
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	7e-48
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	3e-09
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	1e-08
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	3e-06
1v70_A	105	Probable antibiotics synthesis protein; structural	1e-08
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	2e-08
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	4e-08
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	4e-08
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	2e-07
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	6e-08
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	1e-07
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	2e-07
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	3e-07
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	5e-07
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	5e-07
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	6e-07
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	6e-07
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	7e-07
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	5e-04
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	8e-07
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	8e-07
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	8e-07
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	1e-06
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	4e-04
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	2e-06
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	6e-05
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	2e-06
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	3e-06
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	3e-06
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	3e-06
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	5e-06
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	8e-06
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	1e-05
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	1e-05
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	8e-05
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	9e-05
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	1e-04
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	1e-04
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	2e-04
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	3e-04
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	7e-04
3h8u_A	125	Uncharacterized conserved protein with double-STR	5e-04

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6 Length = 191

 Score =  197 bits (501), Expect = 2e-65
 Identities = 92/149 (61%), Positives = 117/149 (78%), Gaps = 1/149 (0%)

Query: 1   MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREAR 60
           MV +AW+MDES+ D R PH   P + VSL+QL  LGVLYW+L+   YEND EL+KIR+ R
Sbjct: 13  MV-QAWYMDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKMR 71

Query: 61  GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWI 120
            YS+MD++ +C + + NYEEK+K F+ EH+H DEEIRY LEGSGYFDVRD+ D+WIRI +
Sbjct: 72  NYSWMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISM 131

Query: 121 KAGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
           + GD+I LPAGIYHRFTLD  NYVK M++
Sbjct: 132 EKGDMITLPAGIYHRFTLDEKNYVKAMRL 160

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A Length = 179

 Score =  152 bits (385), Expect = 7e-48
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 16/153 (10%)

Query: 9   DESSQDQRLPHHLNPKQFVSLDQLAELGVLY--WRLNPKNYEN----------DEELQKI 56
                   L H  N ++     QL   GV +  W+ +                   + K+
Sbjct: 7   SVKDPQNSLWHSTNAEEIQ--QQLNAKGVRFERWQADRDLGAAPTAETVIAAYQHAIDKL 64

Query: 57  REARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWI 116
              +GY   D++ L  +     E   + F  EH H ++E+R+ +EG+G F +    D+  
Sbjct: 65  VAEKGYQSWDVISLRADN-PQKEALREKFLNEHTHGEDEVRFFVEGAGLFCLHIG-DEVF 122

Query: 117 RIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
           ++  +  DLI +PA   H F + +      ++I
Sbjct: 123 QVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRI 155

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145

 Score = 51.9 bits (124), Expect = 3e-09
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
            H H  E   Y LEGS    + D+  +     +  G+ I +P G  H F
Sbjct: 54  PHFHEWEHEIYVLEGSMGLVLPDQ-GRTEE--VGPGEAIFIPRGEPHGF 99

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ 148
           H H    +R+ +EG G F   D      R  +  GD I+ P   +H         V  + 
Sbjct: 116 HRHNQSALRFIVEGKGAFTAVDG----ERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLD 171

Query: 149 ILSYGVQRQSD 159
            L   +     
Sbjct: 172 GLDLPLVNILG 182

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137
               D  I + +EGSG   + +E+  +      A D+ V+P      F 
Sbjct: 284 ARTTDSTIYHVVEGSGQVIIGNETFSF-----SAKDIFVVPTWHGVSFQ 327

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Length = 105

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 89  HIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147
           H+H   +++ Y LEG     V +E        +  G     PAG  H    ++++   ++
Sbjct: 44  HVHEGSDKVYYALEGEVVVRVGEE-----EALLAPGMAAFAPAGAPHGVRNESASPALLL 98

Query: 148 QILS 151
            + +
Sbjct: 99  VVTA 102

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} Length = 102

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 6/56 (10%)

Query: 81  KLKNFYTEHIHADE-EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHR 135
           K++  +  H HAD  E+   +EG+     RD++     I ++AG++ V+P G+ H+
Sbjct: 37  KVEGEFVWHEHADTDEVFIVMEGTLQIAFRDQN-----ITLQAGEMYVIPKGVEHK 87

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Length = 126

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 5/50 (10%)

Query: 87  TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
             H H  E   + L+G                 ++ G  I +     H F
Sbjct: 62  DRHSHPWEHEIFVLKGKLTVLKEQG-----EETVEEGFYIFVEPNEIHGF 106

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* Length = 368

 Score = 50.2 bits (119), Expect = 4e-08
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ 148
           H H+    R+ +EG G + V +       + +  GDL++ P   +H    DT   +  + 
Sbjct: 119 HRHSQNAFRFVVEGEGVWTVVNG----DPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWID 174

Query: 149 ILSYGVQRQSD 159
            L     +Q D
Sbjct: 175 GLDIPFSQQMD 185

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* Length = 368

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 11/109 (10%)

Query: 30  DQLAELGVLYWRLNPKNYE-NDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTE 88
             L E  +L     P         ++ +    G   M  L     ++    E        
Sbjct: 240 RALTEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRLRAGTET-----AT 294

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137
                  +    EG+G   +  E+ +      + GD+ V+P+ +     
Sbjct: 295 RNEVGSTVFQVFEGAGAVVMNGETTKL-----EKGDMFVVPSWVPWSLQ 338

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Length = 163

 Score = 48.6 bits (115), Expect = 6e-08
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWI----RIWIKAGDLIVLPAGIYHRF 136
           H H+ EE+   L+G G   +   S ++      I         +P    H+ 
Sbjct: 57  HRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQV 108

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Length = 115

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137
            H    + +   L G     +  E+ +     +  G  IV+PAGI H   
Sbjct: 55  RHSSPGDAMVTILSGLAEITIDQETYR-----VAEGQTIVMPAGIPHALY 99

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Length = 114

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147
           E  +  + +   L+G       D+      I +   D++++PA   H          K++
Sbjct: 53  EEEYFGDTLYLILQGEAVITFDDQK-----IDLVPEDVLMVPAHKIHAIAGKGR--FKML 105

Query: 148 QILSYGVQR 156
           QI     +R
Sbjct: 106 QITLIDEER 114

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Length = 113

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 88  EHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKV 146
           ++ H   ++  + ++G+G   V           ++AG LI +  G  H         +K 
Sbjct: 38  DNRHRGADQWLFVVDGAGEAIVDGH-----TQALQAGSLIAIERGQAHEIRNTGDTPLKT 92

Query: 147 MQILS 151
           +    
Sbjct: 93  VNFYH 97

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Length = 167

 Score = 46.1 bits (109), Expect = 5e-07
 Identities = 6/50 (12%), Positives = 14/50 (28%), Gaps = 5/50 (10%)

Query: 87  TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
           T   H    +   + G     + D         +   D + +    +H+ 
Sbjct: 70  TLERHEHTHVVMVVRGHAEVVLDDR-----VEPLTPLDCVYIAPHAWHQI 114

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Length = 116

 Score = 44.9 bits (106), Expect = 5e-07
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 87  TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
             H H   ++ Y +EG  + +V           + AGD   +P  + H  
Sbjct: 48  YVHAHRHSQVSYVVEGEFHVNVDGVIKV-----LTAGDSFFVPPHVDHGA 92

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Length = 156

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 87  TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
           T   HA         G G   V +         +  GDL+ +P   +H+F
Sbjct: 58  TLERHAHVHAVMIHRGHGQCLVGET-----ISDVAQGDLVFIPPMTWHQF 102

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Length = 126

 Score = 44.8 bits (106), Expect = 6e-07
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
            H H  E+    LEG+    + +E+        + G    +P G+ HR 
Sbjct: 56  AHEHPHEQAGVMLEGTLELTIGEETRVL-----RPGMAYTIPGGVRHRA 99

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Length = 227

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147
            H    + +   L+G G + V  +        +K G+  VLPA I H    +T N  K++
Sbjct: 168 PHKAPGDALVTVLDGEGKYYVDGKP-----FIVKKGESAVLPANIPHAVEAETEN-FKML 221

Query: 148 QIL 150
            IL
Sbjct: 222 LIL 224

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Length = 227

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 5/54 (9%)

Query: 87  TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT 140
           T          YC  G+G   + +         I  GD + + A   +      
Sbjct: 51  TAEAMLGNRYYYCFNGNGEIFIENNK-----KTISNGDFLEITANHNYSIEARD 99

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} Length = 107

 Score = 44.5 bits (105), Expect = 8e-07
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 81  KLKNFYTEHIHADE-EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
           KL   Y  H H    ++ + +EG    D  D       + I+ G++ V+P  + HR 
Sbjct: 35  KLLGDYGWHTHGYSDKVLFAVEGDMAVDFADGGS----MTIREGEMAVVPKSVSHRP 87

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Length = 114

 Score = 44.3 bits (105), Expect = 8e-07
 Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 5/50 (10%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137
            H  A      CLEG     V     +     +  GDL+ L AG  H   
Sbjct: 51  SHSVAGPSTIQCLEGEVEIGVDGAQRR-----LHQGDLLYLGAGAAHDVN 95

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Length = 125

 Score = 44.8 bits (106), Expect = 8e-07
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 88  EHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137
            H H   EEI   L G G+  +  E     +I ++AGD + +      + +
Sbjct: 42  VHSHKQNEEIYGILSGKGFITIDGE-----KIELQAGDWLRIAPDGKRQIS 87

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 89  HIHADE-EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137
           HIH    E  YC +GS     +  ++      + +GD   +P  + H F 
Sbjct: 66  HIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQ 115

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 88  EHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKV 146
                         EG     + D +       + +GD+  +P G+  ++    + + KV
Sbjct: 266 PTWSFPGACAFQVQEGRVVVQIGDYA----ATELGSGDVAFIPGGVEFKYYS-EAYFSKV 320

Query: 147 MQILS 151
           + + S
Sbjct: 321 LFVSS 325

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 89  HIHADE-EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
           H+H D  E    L+G     +  E     R  + +GD   +PAG  H +
Sbjct: 62  HVHKDTHEGILVLDGKLELTLDGE-----RYLLISGDYANIPAGTPHSY 105

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 89  HIHADE-EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147
           H H    E  YCLEG        +      I +  GD + +PA   H +    S+Y K++
Sbjct: 234 HYHEYHTETFYCLEGQMTMWTDGQ-----EIQLNPGDFLHVPANTVHSYR-LDSHYTKMV 287

Query: 148 QILS 151
            +L 
Sbjct: 288 GVLV 291

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Length = 394

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHR 135
           H HA   +R+ +EGSG + + D      ++ + A D ++ P G +H 
Sbjct: 139 HRHAASALRFIMEGSGAYTIVDG----HKVELGANDFVLTPNGTWHE 181

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Length = 394

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
           H H    I    +G GY  V  +   W        D+  +PA  +H  
Sbjct: 310 HRHTGNVIYNVAKGQGYSIVGGKRFDW-----SEHDIFCVPAWTWHEH 352

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Length = 110

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 4/49 (8%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
            H    E     LEG G F    ++     I    G ++V P    H  
Sbjct: 50  SHNIEGELNIVVLEGEGEFVGDGDA----VIPAPRGAVLVAPISTPHGV 94

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Length = 166

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 87  TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
           T   H        L+G G+  V           +   DL+ +P   +H+F
Sbjct: 67  TLERHQHAHGVMILKGRGHAMVGRA-----VSAVAPYDLVTIPGWSWHQF 111

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score = 44.1 bits (103), Expect = 5e-06
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 18/126 (14%)

Query: 9   DESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLL 68
            E S+ Q  P+     +F++L +  + G    RL  +  E+ E+L+ +R+ R        
Sbjct: 39  SEESRAQNNPYLFRSNKFLTLFK-NQHG--SLRLLQRFNEDTEKLENLRDYR-------- 87

Query: 69  DLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVL 128
                 V  Y  K       H    + +   LEG     + +   +     +  GD I +
Sbjct: 88  ------VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYK-LDQGDAIKI 140

Query: 129 PAGIYH 134
            AG   
Sbjct: 141 QAGTPF 146

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans} Length = 134

 Score = 42.3 bits (99), Expect = 8e-06
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 89  HIH-ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147
           H H    ++ Y L G   F+  D       + ++AG     P G+ HR  L  S+ ++V+
Sbjct: 59  HTHTVGFQLFYVLRGWVEFEYEDIGA----VMLEAGGSAFQPPGVRHRE-LRHSDDLEVL 113

Query: 148 QILS 151
           +I+S
Sbjct: 114 EIVS 117

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Length = 190

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 89  HIHAD---EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137
           H HA     E+   L+G G   ++        I ++ G ++ +P    HR  
Sbjct: 89  HFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTV 140

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYH 134
           H H + E  Y + GS    + DE  +     +  GDL   P+G+ H
Sbjct: 95  HWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPH 140

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Length = 133

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 88  EHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
            H H    EI Y L G G F    +      + IKAGD+    +G  H  
Sbjct: 72  LHKHEGEFEIYYILLGEGVFHDNGK-----DVPIKAGDVCFTDSGESHSI 116

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism} Length = 217

 Score = 40.2 bits (93), Expect = 9e-05
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 85  FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137
            Y  H H  EE+   + G   F +R+  D      ++ G     PA   H  T
Sbjct: 144 DYGWHEHLPEELYSVVSGRALFHLRNAPDL----MLEPGQTRFHPANAPHAMT 192

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Length = 243

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 5/64 (7%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147
            H H +E+I  C+ G     V         + +K G          H     +    K +
Sbjct: 161 FHKHRNEQIGICIGGGYDMTVEGC-----TVEMKFGTAYFCEPREDHGAINRSEKESKSI 215

Query: 148 QILS 151
            I  
Sbjct: 216 NIFF 219

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24 Length = 133

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKV 146
                 +EI   LEG  +     E      +  KAGD++ +P G    F   T   V+ 
Sbjct: 70  PWTLNYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFG--TPTSVRF 121

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae} Length = 276

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 74  KVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIY 133
            V    +     +      D ++ +   G      ++     +   I +  +I+L     
Sbjct: 10  NVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKNCL---VSYEINSSSIILLKKNSI 66

Query: 134 HRFTLDT 140
            RF+L +
Sbjct: 67  QRFSLTS 73

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
           H +ADE   Y L+G     V     +     ++ GD+  +P G  H  
Sbjct: 252 HPNADEWQ-YVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKGYGHAI 298

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 89  HIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYH 134
           H HA+  E  Y +EG     +     +     +  G L   P G  H
Sbjct: 68  HWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGWGH 114

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Length = 125

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 89  HIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137
           H+H   ++    + G   +   +         +KAGD+ +   G  H   
Sbjct: 55  HVHPHGQDTWTVISGEAEYHQGNGIV----THLKAGDIAIAKPGQVHGAM 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	100.0
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	99.97
1v70_A	105	Probable antibiotics synthesis protein; structural	99.29
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.28
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.26
4i4a_A	128	Similar to unknown protein; structural genomics, P	99.22
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.22
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.21
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	99.2
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	99.2
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	99.19
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.18
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	99.18
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	99.18
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	99.17
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	99.16
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.16
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	99.16
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.16
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	99.15
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.13
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	99.13
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	99.12
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.11
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	99.11
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	99.1
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.06
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	99.06
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	99.06
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	99.05
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.03
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	99.03
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	99.03
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	99.03
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	99.02
1sef_A	274	Conserved hypothetical protein; structural genomic	98.99
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.99
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.99
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	98.98
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	98.96
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.96
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.96
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	98.94
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	98.9
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.9
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.89
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	98.89
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	98.89
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	98.88
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	98.88
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.88
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.88
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.87
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	98.86
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.85
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	98.84
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.83
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.83
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	98.82
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	98.82
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	98.81
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.81
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	98.81
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.8
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.79
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	98.79
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	98.79
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	98.78
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	98.77
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.76
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.73
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.73
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	98.71
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.69
3bcw_A	123	Uncharacterized protein; structural genomics, join	98.67
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	98.67
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	98.66
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.66
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	98.66
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	98.64
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	98.64
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	98.63
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	98.62
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	98.61
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	98.6
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	98.59
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	98.59
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	98.58
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	98.58
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	98.54
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	98.52
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.51
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	98.49
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	98.48
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	98.46
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	98.45
1sef_A	274	Conserved hypothetical protein; structural genomic	98.45
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	98.42
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.4
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	98.37
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.35
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	98.33
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	98.26
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	98.25
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	98.25
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	98.21
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	98.18
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.13
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	98.1
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	98.02
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	98.01
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	97.89
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.86
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.86
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	97.84
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	97.64
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	97.25
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	97.21
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.16
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	96.91
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	96.87
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	96.8
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	96.8
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	96.72
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	96.67
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	96.52
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	96.33
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	96.23
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	96.2
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	96.18
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	96.15
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	96.1
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	95.98
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	95.97
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	95.97
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	95.83
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	95.64
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	95.44
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	95.39
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	95.09
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	94.85
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	94.76
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	94.76
4diq_A	489	Lysine-specific demethylase NO66; structural genom	94.33
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	94.32
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	94.08
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	94.07
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	93.98
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	92.92
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	92.73
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	92.32
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	92.09
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	91.72
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	91.62
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	91.38
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	90.92
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	90.9
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	90.38
2rg4_A	216	Uncharacterized protein; rhodobacterales, oceanico	89.28
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	88.64
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	88.51
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	87.88
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	87.67
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	87.3
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	87.11
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	86.43
3uss_A	211	Putative uncharacterized protein; cupin, three his	86.42
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	85.73
2ypd_A	392	Probable JMJC domain-containing histone demethyla	85.69
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	85.65
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	85.35
2xxz_A	332	Lysine-specific demethylase 6B; oxidoreductase, hi	84.37
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	84.36
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	84.32
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	84.1
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	83.82
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	83.09
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	81.14
3kv5_D	488	JMJC domain-containing histone demethylation prote	80.98

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=100.00  E-value=2e-46  Score=296.08  Aligned_cols=157  Identities=57%  Similarity=1.064  Sum_probs=151.6

Q ss_pred             ceEEEEecCCCCCCCCCCccCCCCcCCHhHHhhcCcEEEecCCCCCCChHHHHHHHHhcCCceeeeeeeCCCcccCHHHH
Q 031374            2 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEK   81 (160)
Q Consensus         2 ~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~L~~~GV~~w~~~~~~~~~~~~l~~l~~~~gy~~~dvi~v~~~~~p~~~~~   81 (160)
                      ||+|||||++++|||+||+++|++.||+++|+++||+||+++++.++++.+|++|++++||.+.|+++++++++|+|+++
T Consensus        13 ~~~~~~~~~~~~d~~~ph~~~~~~~v~~~~L~~~GV~~w~~~~~~~~~~~~l~~l~~~~gy~~~D~v~~~p~~~p~~~~k   92 (191)
T 1vr3_A           13 MVQAWYMDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKMRNYSWMDIITICKDTLPNYEEK   92 (191)
T ss_dssp             CCEEEEBCSCCSCTTSCCBCSSCCBCCHHHHHHTTCEEEECCGGGTTSCHHHHHHHHHHTCCEEEEEEESTTTSTTHHHH
T ss_pred             hheeeeccCCccccCcccccCCCCccCHHHHHhcCcEEEECCCccccccHHHHHHHHhcCCCceeEEEECCCcCcchhhh
Confidence            89999999999999999999999999999999999999999987777789999999999999999999999877999999


Q ss_pred             hcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcccCC
Q 031374           82 LKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQS  158 (160)
Q Consensus        82 ~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w~~  158 (160)
                      +..++.+|+|+++|++||++|+|+|.+++.+|+|+++.|++||+|+||+|++|+|.+++++++++||+|..+|.|+.
T Consensus        93 ~~~~~~~H~H~~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~~~W~~  169 (191)
T 1vr3_A           93 IKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGEPVWTP  169 (191)
T ss_dssp             HHHHHSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSSCCCCC
T ss_pred             hccCCcceECCcceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCCCCccC
Confidence            99999999999999999999999999998778999999999999999999999999999999999999999999984

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=99.97  E-value=2e-32  Score=214.10  Aligned_cols=147  Identities=22%  Similarity=0.429  Sum_probs=126.5

Q ss_pred             ecCCCCCCCCCCccCCCCcCCHhHHhhcCcEE--EecCCCCC---CC-------hHHHHHHHHhcCCceeeeeeeCCCcc
Q 031374            8 MDESSQDQRLPHHLNPKQFVSLDQLAELGVLY--WRLNPKNY---EN-------DEELQKIREARGYSYMDLLDLCPEKV   75 (160)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~GV~~--w~~~~~~~---~~-------~~~l~~l~~~~gy~~~dvi~v~~~~~   75 (160)
                      ++++++..++....+++.+  +++|+++||+|  |+++.+..   +.       +.+|++|++++||.+.|+++++++. 
T Consensus         6 ~~~~~~~~~~~~~~~~~~i--~~~L~~~gV~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~l~~~~gy~~~D~i~~~~~~-   82 (179)
T 1zrr_A            6 FSVKDPQNSLWHSTNAEEI--QQQLNAKGVRFERWQADRDLGAAPTAETVIAAYQHAIDKLVAEKGYQSWDVISLRADN-   82 (179)
T ss_dssp             ECSSCSSCEEEEECCSHHH--HHHHHHTTCCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCCTTC-
T ss_pred             ecCCCcCCcceeeCCHHHH--HHHHHHcCcEEEEcCCCCccCCcccHHHHHHHHHHHHHHHHHHhCCCcccEEEEcCCC-
Confidence            3455555666666677777  89999999999  54443221   21       3579999999999999999999885 


Q ss_pred             cCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcc
Q 031374           76 TNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQ  155 (160)
Q Consensus        76 p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~  155 (160)
                      |++++++..|+.+|.|+++|++||++|+|+|.++ .+|+|+++.|++||+|+||+|++|+|.++++++++|||+|...|.
T Consensus        83 p~~~~~~~~~~~~H~H~~~Ei~~Vl~G~g~~~i~-~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~~~  161 (179)
T 1zrr_A           83 PQKEALREKFLNEHTHGEDEVRFFVEGAGLFCLH-IGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNPEG  161 (179)
T ss_dssp             THHHHHHHHHHSCBEESSCEEEEEEESCCCCCEE-CSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCGGG
T ss_pred             CChhHhhcccccceECChheEEEEEcceEEEEEE-eCCEEEEEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCCCC
Confidence            9999999999999999999999999999999998 568899999999999999999999999999999999999999999


Q ss_pred             cCC
Q 031374          156 RQS  158 (160)
Q Consensus       156 w~~  158 (160)
                      |..
T Consensus       162 w~~  164 (179)
T 1zrr_A          162 WIA  164 (179)
T ss_dssp             EES
T ss_pred             ccc
Confidence            953

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.29  E-value=1.2e-11  Score=84.45  Aligned_cols=64  Identities=20%  Similarity=0.320  Sum_probs=56.0

Q ss_pred             cccceecCc-ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCC
Q 031374           85 FYTEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYG  153 (160)
Q Consensus        85 ~~~~H~H~~-~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~  153 (160)
                      ....|+|.. +|++||++|++.+.++++     .+.+++||++++|+|+.|++.+.++..+.++.++...
T Consensus        40 ~~~~H~H~~~~e~~~v~~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~p~  104 (105)
T 1v70_A           40 AQKVHVHEGSDKVYYALEGEVVVRVGEE-----EALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAPR  104 (105)
T ss_dssp             EEEEECCSSCEEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEESC
T ss_pred             cCCccCCCCCcEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEeCCC
Confidence            357899985 799999999999999987     8999999999999999999998777778887776653

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.28  E-value=1.3e-11  Score=87.45  Aligned_cols=67  Identities=10%  Similarity=0.131  Sum_probs=57.8

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEE-EEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCccc
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRI-WIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQR  156 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~-~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w  156 (160)
                      ....|+|+..|+.||++|++.+.++++     .+ .+++||++++|+|+.|++.+.++..+..+.++...|.+
T Consensus        39 ~~~~H~H~~~e~~~Vl~G~~~~~i~~~-----~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~~~~  106 (117)
T 2b8m_A           39 QMPKHYSNSYVHLIIIKGEMTLTLEDQ-----EPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPHPKK  106 (117)
T ss_dssp             BCCCEECSSCEEEEEEESEEEEEETTS-----CCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECSCGGG
T ss_pred             cCCCEeCCCcEEEEEEeCEEEEEECCE-----EEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCCCC
Confidence            356899999999999999999999987     78 99999999999999999998777777877775555443

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.26  E-value=1.7e-11  Score=87.71  Aligned_cols=63  Identities=14%  Similarity=0.238  Sum_probs=55.6

Q ss_pred             cccceecCc-ceEEEEeeeeEEEEE-ecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           85 FYTEHIHAD-EEIRYCLEGSGYFDV-RDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        85 ~~~~H~H~~-~Ei~yvl~G~g~f~i-~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ....|+|.. +|++||++|++.+.+ +++     .+.+++||++++|+|+.|++.+.++..+.++.++..
T Consensus        51 ~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~-----~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p  115 (125)
T 3h8u_A           51 EIASHVHPHGQDTWTVISGEAEYHQGNGI-----VTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAP  115 (125)
T ss_dssp             EECCC-CTTCEEEEEEEECEEEEECSTTC-----EEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEES
T ss_pred             cCCcccCCCCeEEEEEEEeEEEEEECCCe-----EEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECC
Confidence            467999995 899999999999999 777     899999999999999999999988788888888765

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=99.22  E-value=3.7e-11  Score=86.13  Aligned_cols=60  Identities=22%  Similarity=0.357  Sum_probs=53.2

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      ....|+|...|+.||++|++.+.++++     .+.+++||+++||+|+.|++.+.++..+..+.+
T Consensus        46 ~~~~H~H~~~Ei~~v~~G~~~~~i~~~-----~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i  105 (128)
T 4i4a_A           46 KSFRHSHNEYELFIVIQGNAIIRINDE-----DFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI  105 (128)
T ss_dssp             ECCCBCCSSEEEEEEEESEEEEEETTE-----EEEEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             ccCCEecCCeEEEEEEeCEEEEEECCE-----EEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            357899999999999999999999988     999999999999999999999876666665544

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.22  E-value=3.4e-11  Score=86.05  Aligned_cols=62  Identities=27%  Similarity=0.311  Sum_probs=53.3

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      .....|+|..+|++||++|++.+.++++     .+.+++||.|++|+|+.|++.+.+...+.++.+|
T Consensus        47 ~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-----~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~~v~  108 (114)
T 3fjs_A           47 KQVGSHSVAGPSTIQCLEGEVEIGVDGA-----QRRLHQGDLLYLGAGAAHDVNAITNTSLLVTVVL  108 (114)
T ss_dssp             CEEEEECCSSCEEEEEEESCEEEEETTE-----EEEECTTEEEEECTTCCEEEEESSSEEEEEEEEC
T ss_pred             CccCceeCCCcEEEEEEECEEEEEECCE-----EEEECCCCEEEECCCCcEEEEeCCCcEEEEEEEe
Confidence            3467899999999999999999999988     8999999999999999999998765444444444

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.21  E-value=6.1e-11  Score=82.37  Aligned_cols=62  Identities=18%  Similarity=0.230  Sum_probs=53.9

Q ss_pred             ccce--ecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           86 YTEH--IHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        86 ~~~H--~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ...|  +|. .+|++||++|++.+.++++     .+.+++||++++|+|+.|++.+.++..+.++.++..
T Consensus        34 ~~~h~~~H~~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~   98 (113)
T 2gu9_A           34 EGGPDNRHRGADQWLFVVDGAGEAIVDGH-----TQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHP   98 (113)
T ss_dssp             EECCCSSSCCCEEEEEEEECCEEEEETTE-----EEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEES
T ss_pred             cCCcccccCCCcEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECC
Confidence            4567  998 7999999999999999987     899999999999999999999877667777766543

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=99.20  E-value=3.5e-11  Score=84.91  Aligned_cols=52  Identities=17%  Similarity=0.248  Sum_probs=47.6

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      ....|+|+.+|+.||++|++.+.++++     .+.+++||+|++|+|+.|++.+.+.
T Consensus        50 ~~~~H~h~~~e~~~vl~G~~~~~i~~~-----~~~l~~Gd~i~i~~~~~H~~~~~~~  101 (114)
T 2ozj_A           50 SVSEEEYFGDTLYLILQGEAVITFDDQ-----KIDLVPEDVLMVPAHKIHAIAGKGR  101 (114)
T ss_dssp             SCCCBCCSSCEEEEEEEEEEEEEETTE-----EEEECTTCEEEECTTCCBEEEEEEE
T ss_pred             ccccEECCCCeEEEEEeCEEEEEECCE-----EEEecCCCEEEECCCCcEEEEeCCC
Confidence            356899999999999999999999988     8999999999999999999987643

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=99.20  E-value=5.4e-11  Score=85.04  Aligned_cols=62  Identities=24%  Similarity=0.305  Sum_probs=55.0

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ....|+|..+|++||++|++.+.++++     .+.+++||++++|+|+.|++.+.++ .+.++.+|..
T Consensus        53 ~~~~H~H~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v~~p  114 (126)
T 4e2g_A           53 EMPAHEHPHEQAGVMLEGTLELTIGEE-----TRVLRPGMAYTIPGGVRHRARTFED-GCLVLDIFSP  114 (126)
T ss_dssp             EEEEECCSSEEEEEEEEECEEEEETTE-----EEEECTTEEEEECTTCCEEEECCTT-CEEEEEEEES
T ss_pred             cCCCccCCCceEEEEEEeEEEEEECCE-----EEEeCCCCEEEECCCCcEEeEECCC-CEEEEEEECC
Confidence            357899999999999999999999987     8999999999999999999998765 6777766664

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.19  E-value=9.3e-11  Score=87.33  Aligned_cols=68  Identities=18%  Similarity=0.300  Sum_probs=59.7

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCCcEEE-EEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC----CcccCC
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIR-IWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY----GVQRQS  158 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~-~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~----~p~w~~  158 (160)
                      ...|+|...|+.||++|++.+.++++     . +.+++||++++|+|+.|++.+..+..+.++.++..    .+.|.+
T Consensus        61 ~~~H~H~~~E~~~Vl~G~~~~~~~~~-----~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~~~~~~~~~wl~  133 (147)
T 2f4p_A           61 THWHSHPGGQILIVTRGKGFYQERGK-----PARILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQVHLGPAEWLG  133 (147)
T ss_dssp             ECSEECTTCEEEEEEEEEEEEEETTS-----CCEEEETTCEEEECTTCCEEEEEBTTBCEEEEEEECCGGGCCCEECC
T ss_pred             cCceECCCceEEEEEeCEEEEEECCE-----EEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEccCCCCCceecc
Confidence            46899999999999999999999987     7 89999999999999999999887777888777665    367764

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.18  E-value=5.9e-11  Score=86.33  Aligned_cols=64  Identities=22%  Similarity=0.260  Sum_probs=56.5

Q ss_pred             cccceecCcceEEEEeeeeEEEE--EecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCC
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFD--VRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYG  153 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~--i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~  153 (160)
                      ....|+|...|+.||++|++.+.  ++++     .+.+++||++++|+|+.|++.+.++..+.++.++...
T Consensus        51 ~~~~H~H~~~e~~~vl~G~~~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~~  116 (145)
T 3ht1_A           51 STPPHFHEWEHEIYVLEGSMGLVLPDQGR-----TEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPCE  116 (145)
T ss_dssp             ECCCEECSSCEEEEEEEECEEEEEGGGTE-----EEEECTTCEEEECTTCCBEEECCTTCCEEEEEEEESC
T ss_pred             cCCCccCCCceEEEEEEeEEEEEEeECCE-----EEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEECCC
Confidence            35789999999999999999999  9887     8999999999999999999998877778877776543

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=99.18  E-value=5.6e-11  Score=85.83  Aligned_cols=62  Identities=19%  Similarity=0.198  Sum_probs=55.1

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ...|+|+..|+.||++|++.+.++++     .+.+++||++++|+|+.|++.+.++..+.++.++..
T Consensus        61 ~~~H~H~~~e~~~Vl~G~~~~~i~~~-----~~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~v~~~  122 (126)
T 1vj2_A           61 IDRHSHPWEHEIFVLKGKLTVLKEQG-----EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIPK  122 (126)
T ss_dssp             EEEECCSSCEEEEEEESEEEEECSSC-----EEEEETTEEEEECTTCCEEEECCSSSCEEEEEEEEG
T ss_pred             CCceeCCCcEEEEEEEeEEEEEECCE-----EEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence            56899999999999999999999988     899999999999999999999877667777766544

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=99.18  E-value=9e-11  Score=88.89  Aligned_cols=64  Identities=19%  Similarity=0.308  Sum_probs=57.1

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCC
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYG  153 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~  153 (160)
                      ....|+|..+|++||++|++.+.++++     .+.+++||+|+||+|+.|++.+.++..+..+.++...
T Consensus        56 ~~~~H~H~~~E~~~Vl~G~~~v~v~g~-----~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~  119 (156)
T 3kgz_A           56 YSTLERHAHVHAVMIHRGHGQCLVGET-----ISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAA  119 (156)
T ss_dssp             ECCCBBCSSCEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred             ccCceeCCCcEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence            357899999999999999999999988     9999999999999999999998777788877776553

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=99.17  E-value=9.9e-11  Score=82.27  Aligned_cols=58  Identities=21%  Similarity=0.335  Sum_probs=50.4

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      ....|+|+..|+.||++|++.+.++++     .+.+++||++++|+|+.|++.+.+.  ++++.+
T Consensus        52 ~~~~H~H~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~~--~~~~~v  109 (115)
T 1yhf_A           52 EIGRHSSPGDAMVTILSGLAEITIDQE-----TYRVAEGQTIVMPAGIPHALYAVEA--FQMLLV  109 (115)
T ss_dssp             EEEEECCSSEEEEEEEESEEEEEETTE-----EEEEETTCEEEECTTSCEEEEESSC--EEEEEE
T ss_pred             ccCCEECCCcEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCC--ceEEEE
Confidence            356899999999999999999999987     8999999999999999999998763  444433

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=99.16  E-value=1.1e-10  Score=82.16  Aligned_cols=60  Identities=22%  Similarity=0.227  Sum_probs=52.6

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ...|+|+.+|+.||++|++.+.++++     .+.+++||++++|+|+.|++.+.+  ...++.+|..
T Consensus        47 ~~~H~H~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l~v~~p  106 (116)
T 2pfw_A           47 GYVHAHRHSQVSYVVEGEFHVNVDGV-----IKVLTAGDSFFVPPHVDHGAVCPT--GGILIDTFSP  106 (116)
T ss_dssp             EEEECCSSEEEEEEEEECEEEEETTE-----EEEECTTCEEEECTTCCEEEEESS--CEEEEEEEES
T ss_pred             CCcEECCcceEEEEEeeEEEEEECCE-----EEEeCCCCEEEECcCCceeeEeCC--CcEEEEEECC
Confidence            57899999999999999999999887     899999999999999999999876  4566666543

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.16  E-value=1.2e-10  Score=88.81  Aligned_cols=64  Identities=11%  Similarity=0.153  Sum_probs=56.4

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC-CCcEEEEEEecC
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT-SNYVKVMQILSY  152 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~-~~~~~~ir~f~~  152 (160)
                      .....|+|..+|++||++|++.+.++++     .+.+++||+|+||+|+.|++.+.+ +..+.++.++..
T Consensus        67 ~~~~~H~H~~~E~~~Vl~G~~~~~i~~~-----~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~  131 (167)
T 3ibm_A           67 GYTTLERHEHTHVVMVVRGHAEVVLDDR-----VEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDS  131 (167)
T ss_dssp             CBCCCBBCSSCEEEEEEESEEEEEETTE-----EEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEES
T ss_pred             CCCCCccCCCcEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeC
Confidence            3467899999999999999999999988     999999999999999999998876 677777766544

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=99.16  E-value=2.3e-10  Score=88.91  Aligned_cols=67  Identities=19%  Similarity=0.226  Sum_probs=58.5

Q ss_pred             ccceecCc---ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           86 YTEHIHAD---EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        86 ~~~H~H~~---~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ...|+|..   +|++||++|++.+.++++.++++.+.+++||+|++|+|+.|++.+.++..++++.++..
T Consensus        86 ~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~  155 (190)
T 1x82_A           86 TKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPA  155 (190)
T ss_dssp             CCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEET
T ss_pred             CCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCeEEEEECCcccEEEEEEECC
Confidence            45788863   79999999999999998877888899999999999999999999887777887776654

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.16  E-value=1.2e-10  Score=87.40  Aligned_cols=68  Identities=22%  Similarity=0.175  Sum_probs=55.7

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCC----CcEEEEEEcCCcEEEeCCCCeeeeeeCC-CCcEEEEEEecCC
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDES----DQWIRIWIKAGDLIVLPAGIYHRFTLDT-SNYVKVMQILSYG  153 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~----~~~~~~~v~~GDli~iP~g~~H~f~~~~-~~~~~~ir~f~~~  153 (160)
                      ...|+|...|++||++|++.+.+++.+    ++.-.+.+++||+++||+|+.|++.+.+ +..+.++.++...
T Consensus        54 ~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~  126 (163)
T 1lr5_A           54 TPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRP  126 (163)
T ss_dssp             CCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEESS
T ss_pred             CCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEEEEEEECCC
Confidence            578999999999999999999999811    1112899999999999999999999876 6677777666543

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=99.15  E-value=1.3e-10  Score=88.95  Aligned_cols=63  Identities=17%  Similarity=0.194  Sum_probs=56.4

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ....|+|..+|++||++|++.+.++++     .+.+++||+|+||+|+.|++.+..+..+..+.++..
T Consensus        65 ~~~~H~H~~~E~~~Vl~G~~~~~v~g~-----~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i~~~  127 (166)
T 3jzv_A           65 HSTLERHQHAHGVMILKGRGHAMVGRA-----VSAVAPYDLVTIPGWSWHQFRAPADEALGFLCMVNA  127 (166)
T ss_dssp             ECCCBBCSSCEEEEEEEECEEEEETTE-----EEEECTTCEEEECTTCCEEEECCTTSCEEEEEEEES
T ss_pred             ccCceeCCCcEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence            457899999999999999999999988     999999999999999999999877777777776654

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.13  E-value=1.6e-10  Score=86.57  Aligned_cols=63  Identities=24%  Similarity=0.373  Sum_probs=56.7

Q ss_pred             ccceec-CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCC-CeeeeeeCCCCcEEEEEEecCC
Q 031374           86 YTEHIH-ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAG-IYHRFTLDTSNYVKVMQILSYG  153 (160)
Q Consensus        86 ~~~H~H-~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g-~~H~f~~~~~~~~~~ir~f~~~  153 (160)
                      ...|+| ..+|++||++|++.+.++++     .+.+++||+|++|+| +.|++.+.++..+.++.++...
T Consensus        60 ~~~H~H~~~~E~~~Vl~G~~~~~~~~~-----~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~p~  124 (162)
T 3l2h_A           60 TEYHLHHYEEEAVYVLSGKGTLTMEND-----QYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRL  124 (162)
T ss_dssp             SSSBEESSCCEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEECC
T ss_pred             CCCccCCCCCEEEEEEEEEEEEEECCE-----EEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEECCC
Confidence            578999 68999999999999999988     899999999999998 9999998877788888777654

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=99.13  E-value=1.6e-10  Score=83.61  Aligned_cols=60  Identities=28%  Similarity=0.428  Sum_probs=51.0

Q ss_pred             ccceecCc-ceEEEEeeeeEEEEEec-CCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           86 YTEHIHAD-EEIRYCLEGSGYFDVRD-ESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        86 ~~~H~H~~-~Ei~yvl~G~g~f~i~~-~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      ...|+|.. +|++||++|++.+.+++ +     .+.+++||++++|+|+.|++.+.++. .+++.++.
T Consensus        56 ~~~H~H~~~~E~~~vl~G~~~~~~~~~~-----~~~l~~Gd~~~ip~g~~H~~~~~~~~-~~~l~~~~  117 (134)
T 2o8q_A           56 PTWHTHTVGFQLFYVLRGWVEFEYEDIG-----AVMLEAGGSAFQPPGVRHRELRHSDD-LEVLEIVS  117 (134)
T ss_dssp             CCCEEECCSCEEEEEEESEEEEEETTTE-----EEEEETTCEEECCTTCCEEEEEECTT-CEEEEEES
T ss_pred             CCCEECCCCcEEEEEEeCEEEEEECCcE-----EEEecCCCEEEECCCCcEEeEeCCCC-eEEEEEEC
Confidence            47899997 99999999999999998 7     89999999999999999999884443 45554443

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=99.12  E-value=2.1e-10  Score=79.53  Aligned_cols=64  Identities=27%  Similarity=0.279  Sum_probs=53.3

Q ss_pred             CcccceecCc-ceE-EEEeeeeEEEEEe-cCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCc
Q 031374           84 NFYTEHIHAD-EEI-RYCLEGSGYFDVR-DESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV  154 (160)
Q Consensus        84 ~~~~~H~H~~-~Ei-~yvl~G~g~f~i~-~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p  154 (160)
                      .....|+|+. .|+ .||++|++.+.++ ++     .+.+++||++++|+|+.|++.+.++  ..++.+|...|
T Consensus        44 ~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~~--~~~l~~~~p~~  110 (110)
T 2q30_A           44 QELPVHSHNIEGELNIVVLEGEGEFVGDGDA-----VIPAPRGAVLVAPISTPHGVRAVTD--MKVLVTIAPPI  110 (110)
T ss_dssp             CEEEEECCSSSCEEEEEEEESCEEEECGGGC-----EEEECTTEEEEEETTSCEEEEESSS--EEEEEEEESCC
T ss_pred             CcCCcccCCCCccEEEEEEeCEEEEEeCCCE-----EEEECCCCEEEeCCCCcEEEEEcCC--cEEEEEECCCC
Confidence            3457899985 788 8999999999998 57     8999999999999999999998754  56666676543

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.11  E-value=2.8e-10  Score=84.42  Aligned_cols=68  Identities=19%  Similarity=0.251  Sum_probs=56.0

Q ss_pred             cccceecCc-ceEEEEeeeeEEEEEecCCC-cEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           85 FYTEHIHAD-EEIRYCLEGSGYFDVRDESD-QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        85 ~~~~H~H~~-~Ei~yvl~G~g~f~i~~~~~-~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ....|+|.. +|++||++|++.+.+++..+ .++++.+++||+|++|+|+.|++.+.++..++++.++..
T Consensus        55 ~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~i~~~  124 (148)
T 2oa2_A           55 DIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYSIYAP  124 (148)
T ss_dssp             BCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEEEES
T ss_pred             ccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEEEECC
Confidence            357899984 69999999999999997732 244599999999999999999999877777777766543

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=99.11  E-value=9.8e-11  Score=80.19  Aligned_cols=50  Identities=32%  Similarity=0.573  Sum_probs=46.7

Q ss_pred             ccceecCc-ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           86 YTEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        86 ~~~H~H~~-~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      ...|+|+. .|+.||++|++.+.++++     .+.+++||++++|+|+.|++.+.+
T Consensus        42 ~~~H~H~~~~e~~~v~~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~   92 (102)
T 3d82_A           42 FVWHEHADTDEVFIVMEGTLQIAFRDQ-----NITLQAGEMYVIPKGVEHKPMAKE   92 (102)
T ss_dssp             CCCBCCTTCCEEEEEEESEEEEECSSC-----EEEEETTEEEEECTTCCBEEEEEE
T ss_pred             CCceeCCCCcEEEEEEeCEEEEEECCE-----EEEEcCCCEEEECCCCeEeeEcCC
Confidence            67899998 999999999999999988     899999999999999999998763

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=99.10  E-value=4.3e-10  Score=85.24  Aligned_cols=75  Identities=21%  Similarity=0.249  Sum_probs=62.4

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCc-ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCC--CeeeeeeCCC
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTLDTS  141 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~-~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g--~~H~f~~~~~  141 (160)
                      .-++++.|+.         .....|+|.. +|++||++|++.+.++++     .+.+++||+|++|+|  +.|++.+.++
T Consensus        45 ~~~~~l~pG~---------~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~-----~~~l~~GD~i~ip~~~~~~H~~~n~~~  110 (163)
T 3i7d_A           45 VNLVRLEPGA---------KSSLRHYHMEQDEFVMVTEGALVLVDDQG-----EHPMVPGDCAAFPAGDPNGHQFVNRTD  110 (163)
T ss_dssp             EEEEEECTTC---------BSSSSEEESSCCEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTCCCCBEEECCSS
T ss_pred             EEEEEECCCC---------cCCCCccCCCCcEEEEEEECEEEEEECCE-----EEEeCCCCEEEECCCCCcceEEEECCC
Confidence            3456666653         1236899987 799999999999999988     999999999999999  9999998777


Q ss_pred             CcEEEEEEecCC
Q 031374          142 NYVKVMQILSYG  153 (160)
Q Consensus       142 ~~~~~ir~f~~~  153 (160)
                      ..++++.++...
T Consensus       111 ~~~~~l~v~~p~  122 (163)
T 3i7d_A          111 APATFLVVGTRT  122 (163)
T ss_dssp             SCEEEEEEEECC
T ss_pred             CCEEEEEEECCC
Confidence            788888777654

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.06  E-value=1e-09  Score=85.69  Aligned_cols=68  Identities=18%  Similarity=0.239  Sum_probs=58.5

Q ss_pred             cccceecCc-ceEEEEeeeeEEEEEecCC---CcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           85 FYTEHIHAD-EEIRYCLEGSGYFDVRDES---DQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        85 ~~~~H~H~~-~Ei~yvl~G~g~f~i~~~~---~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ....|+|+. +|+.||++|++.+.+.+.+   ++.+...+++||++++|+|+.|++.+..+..+.++.+|..
T Consensus        84 ~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~  155 (201)
T 1fi2_A           84 TNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNS  155 (201)
T ss_dssp             EEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESS
T ss_pred             CCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECC
Confidence            357899995 7999999999999997554   6777899999999999999999999877777888877654

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=99.06  E-value=3e-10  Score=79.27  Aligned_cols=54  Identities=22%  Similarity=0.416  Sum_probs=46.1

Q ss_pred             cceecCc-ceEEEEeeeeEEEEEec-CCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEE
Q 031374           87 TEHIHAD-EEIRYCLEGSGYFDVRD-ESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM  147 (160)
Q Consensus        87 ~~H~H~~-~Ei~yvl~G~g~f~i~~-~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~i  147 (160)
                      ..|+|+. +|+.||++|++.+.+++ +     .+.+++||++++|+|+.|++.+.+  .++++
T Consensus        41 ~~H~H~~~~E~~~Vl~G~~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l   96 (107)
T 2i45_A           41 GWHTHGYSDKVLFAVEGDMAVDFADGG-----SMTIREGEMAVVPKSVSHRPRSEN--GCSLV   96 (107)
T ss_dssp             CCBCC--CCEEEEESSSCEEEEETTSC-----EEEECTTEEEEECTTCCEEEEEEE--EEEEE
T ss_pred             cceeCCCCCEEEEEEeCEEEEEECCCc-----EEEECCCCEEEECCCCcEeeEeCC--CeEEE
Confidence            5899998 99999999999999998 7     899999999999999999998843  34444

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.06  E-value=5.8e-10  Score=81.39  Aligned_cols=59  Identities=27%  Similarity=0.376  Sum_probs=51.9

Q ss_pred             ccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           86 YTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        86 ~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      ...|+|. .+|++||++|++.+.++++     .+.+++||++++|+|+.|++.+.++..++++.+
T Consensus        70 ~~~H~H~~~~E~~~Vl~G~~~~~i~~~-----~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~v  129 (133)
T 1o4t_A           70 VGLHKHEGEFEIYYILLGEGVFHDNGK-----DVPIKAGDVCFTDSGESHSIENTGNTDLEFLAV  129 (133)
T ss_dssp             EEEEECCSEEEEEEEEESEEEEEETTE-----EEEEETTEEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             cCceECCCccEEEEEEeCEEEEEECCE-----EEEeCCCcEEEECCCCcEEeEECCCCCEEEEEE
Confidence            4689998 6999999999999999988     899999999999999999999876666665544

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=99.05  E-value=7.4e-10  Score=79.31  Aligned_cols=57  Identities=23%  Similarity=0.395  Sum_probs=48.6

Q ss_pred             ceecCcce-EEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           88 EHIHADEE-IRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        88 ~H~H~~~E-i~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      .|+|+..| ++||++|++.+.++++     .+.+++||++++|+|+.|++.+.++..+.++.+
T Consensus        42 ~H~H~~~e~~~~vl~G~~~~~i~~~-----~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~~i   99 (125)
T 3cew_A           42 VHSHKQNEEIYGILSGKGFITIDGE-----KIELQAGDWLRIAPDGKRQISAASDSPIGFLCI   99 (125)
T ss_dssp             EEEESSEEEEEEEEEEEEEEEETTE-----EEEEETTEEEEECTTCCEEEEEBTTBCEEEEEE
T ss_pred             CccCCCceEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence            79999765 5569999999999988     899999999999999999998876555665544

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.03  E-value=6e-10  Score=80.72  Aligned_cols=64  Identities=16%  Similarity=0.175  Sum_probs=49.1

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcccCC
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQS  158 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w~~  158 (160)
                      +.+|. ..+|++||++|++.+.++++     .+.+++||.|.||+|+.|++.+.+ ...+++  |.-.|.|.+
T Consensus        53 ~~~H~-~~~E~~~Vl~G~~~~~~~g~-----~~~l~~GD~v~ip~g~~H~~~~~~-~~~~~l--~v~~P~w~~  116 (119)
T 3lwc_A           53 LTETM-AVDDVMIVLEGRLSVSTDGE-----TVTAGPGEIVYMPKGETVTIRSHE-EGALTA--YVTYPHWRP  116 (119)
T ss_dssp             EEEEC-SSEEEEEEEEEEEEEEETTE-----EEEECTTCEEEECTTCEEEEEEEE-EEEEEE--EEEECC---
T ss_pred             cCccC-CCCEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCEEEEEcCC-CCeEEE--EEECCCCcc
Confidence            34554 67999999999999999877     899999999999999999998753 345544  444555864

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=99.03  E-value=7.3e-10  Score=88.54  Aligned_cols=66  Identities=20%  Similarity=0.248  Sum_probs=57.8

Q ss_pred             cCcccceecCcceEEEEeeeeEEEEEe-cCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCc
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYFDVR-DESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV  154 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f~i~-~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p  154 (160)
                      +..++.|.|..+|++|||+|.+.|.++ ++     ...+++||.|++|+|+.|+.+. .+..+.++-++.+.|
T Consensus       142 G~~yP~HsHp~EEiy~VLsG~~e~~v~~g~-----~~~l~pGd~v~ipsgv~Ha~rt-~dePllalwvW~G~~  208 (217)
T 4b29_A          142 GLDYGWHEHLPEELYSVVSGRALFHLRNAP-----DLMLEPGQTRFHPANAPHAMTT-LTDPILTLVLWRGAG  208 (217)
T ss_dssp             SCEEEEEECSSEEEEEEEEECEEEEETTSC-----CEEECTTCEEEECTTCCEEEEC-CSSCEEEEEEEESTT
T ss_pred             CCcCCCCCCCCceEEEEEeCCEEEEECCCC-----EEecCCCCEEEcCCCCceeEEE-CCccEEEEEEEeCCC
Confidence            456899999999999999999999998 44     7899999999999999999985 447788887777765

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=99.03  E-value=6.7e-10  Score=76.67  Aligned_cols=59  Identities=14%  Similarity=0.130  Sum_probs=51.0

Q ss_pred             ccceecCcc-eEEEEeeeeEEEEEec--CCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           86 YTEHIHADE-EIRYCLEGSGYFDVRD--ESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        86 ~~~H~H~~~-Ei~yvl~G~g~f~i~~--~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      ...|.|..+ |+.||++|++.+.+++  +     .+.+++||.+.+|+|+.|++.+.++..++++.+
T Consensus        31 ~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~-----~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v   92 (97)
T 2fqp_A           31 TGWHRHSMDYVVVPMTTGPLLLETPEGSV-----TSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEI   92 (97)
T ss_dssp             CCSEECCSCEEEEESSCEEEEEEETTEEE-----EEEECTTCCEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             CCCEECCCCcEEEEEeecEEEEEeCCCCE-----EEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEE
Confidence            458999975 6999999999999987  5     799999999999999999999877666666544

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=99.03  E-value=7.1e-10  Score=79.04  Aligned_cols=59  Identities=15%  Similarity=0.196  Sum_probs=49.3

Q ss_pred             ceecCcceEEEEeeeeEEEEEecCCCcEEE--EEEcCCcEEEeCCCCeeeeeeCCCC-cEEEEEEec
Q 031374           88 EHIHADEEIRYCLEGSGYFDVRDESDQWIR--IWIKAGDLIVLPAGIYHRFTLDTSN-YVKVMQILS  151 (160)
Q Consensus        88 ~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~--~~v~~GDli~iP~g~~H~f~~~~~~-~~~~ir~f~  151 (160)
                      +|.|..+|+.||++|++.+.++++     .  +.+++||.|+||+|+.|++.+.+.. .+..+.+|.
T Consensus        48 ~~~~~~~E~~~Vl~G~~~l~~~~~-----~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~v~~  109 (112)
T 2opk_A           48 WYDSPQDEWVMVVSGSAGIECEGD-----TAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLAVHC  109 (112)
T ss_dssp             CBCCSSEEEEEEEESCEEEEETTC-----SSCEEECTTEEEEECTTCCEEEEEECSSSCEEEEEEEE
T ss_pred             cccCCccEEEEEEeCeEEEEECCE-----EEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEE
Confidence            366788999999999999999987     7  9999999999999999999875543 555555554

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=99.02  E-value=1.1e-09  Score=84.09  Aligned_cols=58  Identities=21%  Similarity=0.308  Sum_probs=52.1

Q ss_pred             ceecCcceEEEEeeeeEEEEEec----CCCcEEEEEEcCCcEEEeCCCCeeeeeeC-CCCcEEEEEEe
Q 031374           88 EHIHADEEIRYCLEGSGYFDVRD----ESDQWIRIWIKAGDLIVLPAGIYHRFTLD-TSNYVKVMQIL  150 (160)
Q Consensus        88 ~H~H~~~Ei~yvl~G~g~f~i~~----~~~~~~~~~v~~GDli~iP~g~~H~f~~~-~~~~~~~ir~f  150 (160)
                      .|.|..+|+.||++|++.+.+++    +     .+.+++||.+++|+|++|++.+. ++..++++.++
T Consensus       135 ~h~h~~~E~~~Vl~G~~~~~~~~~~~~~-----~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~l~v~  197 (198)
T 2bnm_A          135 NSGHAGNEFLFVLEGEIHMKWGDKENPK-----EALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVN  197 (198)
T ss_dssp             CCCCSSCEEEEEEESCEEEEESCTTSCE-----EEEECTTCEEEECTTCCEEEEESTTSCCEEEEEEE
T ss_pred             cccCCCeEEEEEEeeeEEEEECCcCCcc-----cEEECCCCEEEeCCCCceEEEecCCCCCeEEEEEe
Confidence            69999999999999999999998    6     89999999999999999999987 66677776654

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.99  E-value=1.4e-09  Score=88.48  Aligned_cols=59  Identities=17%  Similarity=0.218  Sum_probs=53.0

Q ss_pred             ccc-eecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC-CcEEEEEE
Q 031374           86 YTE-HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS-NYVKVMQI  149 (160)
Q Consensus        86 ~~~-H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~-~~~~~ir~  149 (160)
                      ... |+|..+|++||++|++.+.++++     .+.+++||+|++|+|+.|++.+.++ ..++.+.+
T Consensus       195 ~~~~H~H~~~E~~yVl~G~~~~~i~~~-----~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l~~  255 (274)
T 1sef_A          195 HAYIETHVQEHGAYLISGQGMYNLDNE-----WYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYS  255 (274)
T ss_dssp             CSSCBCCSCCEEEEEEECEEEEEETTE-----EEEEETTCEEEECTTCCEEEEEECSSSCEEEEEE
T ss_pred             cCcceeccCeEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEeCCCCCCEEEEEE
Confidence            355 99999999999999999999988     8999999999999999999998766 77777766

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.99  E-value=1.1e-09  Score=86.86  Aligned_cols=62  Identities=18%  Similarity=0.313  Sum_probs=53.9

Q ss_pred             cCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      +...+.|.|+.+|+.||++|++.|.++++     ...+++||++++|+|++|++.+.+.  ++++-++.
T Consensus        47 G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~-----~~~l~~Gd~~~~p~~~~H~~~a~~~--~~~l~i~~  108 (227)
T 3rns_A           47 DEEITAEAMLGNRYYYCFNGNGEIFIENN-----KKTISNGDFLEITANHNYSIEARDN--LKLIEIGE  108 (227)
T ss_dssp             TCEEEECSCSSCEEEEEEESEEEEEESSC-----EEEEETTEEEEECSSCCEEEEESSS--EEEEEEEE
T ss_pred             CCccCccccCCCEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCC--cEEEEEEe
Confidence            45678999999999999999999999988     8999999999999999999998764  55554433

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.99  E-value=8.4e-10  Score=84.27  Aligned_cols=57  Identities=19%  Similarity=0.290  Sum_probs=49.9

Q ss_pred             ccceecC-cceEEEEee--eeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           86 YTEHIHA-DEEIRYCLE--GSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        86 ~~~H~H~-~~Ei~yvl~--G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      ...|+|. .+|++||++  |++.+.++++     .+.+++||+|+||+|+.|++. +   .++++.++.
T Consensus        58 ~~~H~H~~~~E~~yVLe~~G~g~v~idge-----~~~l~~GD~v~IPpg~~H~i~-g---~l~~L~I~~  117 (157)
T 4h7l_A           58 ARTHYHREHQEIYVVLDHAAHATIELNGQ-----SYPLTKLLAISIPPLVRHRIV-G---EATIINIVS  117 (157)
T ss_dssp             CCCBBCSSCEEEEEEEEECTTCEEEETTE-----EEECCTTEEEEECTTCCEEEE-S---CEEEEEEEE
T ss_pred             ccceECCCCcEEEEEEecCcEEEEEECCE-----EEEeCCCCEEEECCCCeEeeE-C---CEEEEEEEC
Confidence            5789997 579999999  9999999988     899999999999999999996 2   567766654

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=98.98  E-value=1.1e-09  Score=87.55  Aligned_cols=63  Identities=19%  Similarity=0.156  Sum_probs=57.7

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ....|+|..+|++||++|++.+.++++     .+.+++||.|.+|+|+.|++.+.++..++++.+|..
T Consensus       158 ~~~~H~H~~~e~~~Vl~G~~~~~i~~~-----~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p  220 (243)
T 3h7j_A          158 EMPFHKHRNEQIGICIGGGYDMTVEGC-----TVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFP  220 (243)
T ss_dssp             EEEEECCSSEEEEEECSSCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEES
T ss_pred             cCCCEeCCCcEEEEEEECEEEEEECCE-----EEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcC
Confidence            457899999999999999999999988     899999999999999999999988888888888873

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=98.96  E-value=1.6e-09  Score=83.01  Aligned_cols=58  Identities=19%  Similarity=0.119  Sum_probs=50.4

Q ss_pred             ceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           88 EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        88 ~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      .|+|..+|+.||++|++.+.++++     .+.+++||.|++|+|++|++.+.++..+ ++.++.
T Consensus       121 ~H~h~~~E~~~Vl~G~~~~~~~~~-----~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~  178 (192)
T 1y9q_A          121 PHALGVIEYIHVLEGIMKVFFDEQ-----WHELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIVA  178 (192)
T ss_dssp             CCSTTCEEEEEEEESCEEEEETTE-----EEEECTTCEEEEECSSSEEEEESSSCEE-EEEEEE
T ss_pred             CCCCCCEEEEEEEEeEEEEEECCE-----EEEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEEe
Confidence            678888999999999999999988     8999999999999999999998766666 554443

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.96  E-value=1.8e-09  Score=85.60  Aligned_cols=61  Identities=26%  Similarity=0.431  Sum_probs=52.5

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      .....|+|+.+|+.||++|++.+.++++     .+.+++||.+++|+|++|++.++ ...++++.+.
T Consensus       164 ~~~~~H~H~~~e~~~Vl~G~~~~~i~g~-----~~~l~~Gd~i~ip~~~~H~~~~~-~~~~~~ll~~  224 (227)
T 3rns_A          164 ESLDPHKAPGDALVTVLDGEGKYYVDGK-----PFIVKKGESAVLPANIPHAVEAE-TENFKMLLIL  224 (227)
T ss_dssp             CEEEEECCSSEEEEEEEEEEEEEEETTE-----EEEEETTEEEEECTTSCEEEECC-SSCEEEEEEE
T ss_pred             CccCCEECCCcEEEEEEeEEEEEEECCE-----EEEECCCCEEEECCCCcEEEEeC-CCCEEEEEEE
Confidence            4567999999999999999999999988     89999999999999999999984 3456665443

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=98.96  E-value=1.4e-09  Score=76.78  Aligned_cols=47  Identities=26%  Similarity=0.382  Sum_probs=43.0

Q ss_pred             ceecCcceEEEEeeeeEEEEEe-cCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           88 EHIHADEEIRYCLEGSGYFDVR-DESDQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        88 ~H~H~~~Ei~yvl~G~g~f~i~-~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      .| |+.+|+.||++|++.+.++ ++     .+.+++||+|++|+|++|++.+.+
T Consensus        45 ~h-H~~~E~~~Vl~G~~~~~i~~g~-----~~~l~~GD~i~ip~g~~H~~~n~~   92 (101)
T 1o5u_A           45 WY-YDTNETCYILEGKVEVTTEDGK-----KYVIEKGDLVTFPKGLRCRWKVLE   92 (101)
T ss_dssp             EE-CSSCEEEEEEEEEEEEEETTCC-----EEEEETTCEEEECTTCEEEEEEEE
T ss_pred             cc-CCceEEEEEEeCEEEEEECCCC-----EEEECCCCEEEECCCCcEEEEeCC
Confidence            46 8899999999999999998 77     899999999999999999998744

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=98.94  E-value=4.9e-09  Score=87.62  Aligned_cols=68  Identities=19%  Similarity=0.222  Sum_probs=56.4

Q ss_pred             cccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           85 FYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        85 ~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ....|+|. .+|++||++|++.+.+.+.+++-..+.+++||+++||+|+.|++.+.++..+.++-+|..
T Consensus        64 ~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~  132 (361)
T 2vqa_A           64 IRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFND  132 (361)
T ss_dssp             EEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESS
T ss_pred             CCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECC
Confidence            35689999 899999999999999965444333689999999999999999999887677887766643

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=98.90  E-value=1.1e-08  Score=90.11  Aligned_cols=67  Identities=13%  Similarity=0.271  Sum_probs=58.1

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecCCC-cEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDESD-QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~-~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      +.....|+|+ ..|++||++|++.+.+.+.++ +++...+++||+++||+|..|+..++ +..+.++.|+
T Consensus       348 Ga~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng-~~~l~~l~f~  416 (476)
T 1fxz_A          348 NAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQ-SDNFEYVSFK  416 (476)
T ss_dssp             TCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEC-STTEEEEEEE
T ss_pred             CceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeC-CCCEEEEEEE
Confidence            3568899998 689999999999999987653 57777899999999999999999984 6778888888

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.90  E-value=5.2e-09  Score=76.82  Aligned_cols=49  Identities=14%  Similarity=0.313  Sum_probs=45.9

Q ss_pred             cceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           87 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        87 ~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      ..|.|+..|+.||++|+|.+.++++     .+.+++||+++||||+.|.+...+
T Consensus        32 ~p~~h~~~~i~~v~~G~~~~~i~~~-----~~~l~~Gd~~~i~p~~~H~~~~~~   80 (164)
T 2arc_A           32 RPLGMKGYILNLTIRGQGVVKNQGR-----EFVCRPGDILLFPPGEIHHYGRHP   80 (164)
T ss_dssp             ETTCCSSEEEEEEEEECEEEEETTE-----EEEECTTCEEEECTTCCEEEEECT
T ss_pred             cccCCCceEEEEEEEeEEEEEECCE-----EEEecCCeEEEEcCCCCEEEEeCC
Confidence            4789999999999999999999988     999999999999999999988765

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.89  E-value=7.7e-09  Score=84.91  Aligned_cols=68  Identities=19%  Similarity=0.364  Sum_probs=59.2

Q ss_pred             eeeeeeCCCcccCHHHHhcCccc-ceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYT-EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~-~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~  143 (160)
                      ..++++.|+.          ..+ .|+|..+|.+|||+|+|.|.+++.     .+.|++||+|.++|+..|++.+.....
T Consensus       188 ~~~~t~~PG~----------~~p~~e~H~~eh~~~vL~G~g~y~l~~~-----~~~V~~GD~i~~~~~~~h~~~n~G~e~  252 (266)
T 4e2q_A          188 IHTMDFQPGE----------FLNVKEVHYNQHGLLLLEGQGIYRLGDN-----WYPVQAGDVIWMAPFVPQWYAALGKTR  252 (266)
T ss_dssp             EEEEEECTTC----------BCSSCCCCSCCEEEEEEECEEEEEETTE-----EEEEETTCEEEECTTCCEEEEEESSSC
T ss_pred             EEEEEECCCc----------CcCCceEcccceEEEEEeceEEEEECCE-----EEEecCCCEEEECCCCcEEEEeCCCCC
Confidence            5677788763          233 588999999999999999999988     899999999999999999999988788


Q ss_pred             EEEE
Q 031374          144 VKVM  147 (160)
Q Consensus       144 ~~~i  147 (160)
                      ++.|
T Consensus       253 ~~yl  256 (266)
T 4e2q_A          253 SRYL  256 (266)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8877

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=98.89  E-value=2.3e-09  Score=90.74  Aligned_cols=61  Identities=26%  Similarity=0.396  Sum_probs=53.8

Q ss_pred             CcccceecCcceEEEEeeeeEEE-EEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYF-DVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f-~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      .....|+|..+|++||++|+|.| .++++     ++.+++||+|++|+|+.|++.+.++..+..+.+
T Consensus       111 ~~~~~H~H~~~e~~yVl~G~g~~t~v~g~-----~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v  172 (354)
T 2d40_A          111 EVAPSHRHNQSALRFIVEGKGAFTAVDGE-----RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDG  172 (354)
T ss_dssp             CEEEEEEESSCEEEEEEECSSCEEEETTE-----EEECCTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             CCcCCeecCcceEEEEEEEEEEEEEECCE-----EEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            44678999999999999999999 88877     899999999999999999999877767776654

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=98.89  E-value=9.9e-09  Score=85.74  Aligned_cols=68  Identities=18%  Similarity=0.286  Sum_probs=58.1

Q ss_pred             cccceecCc-ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           85 FYTEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        85 ~~~~H~H~~-~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ....|+|.. +|++||++|++.+.+.+.+++...+.+++||++++|+|..|++.+.++..++++.++..
T Consensus       246 ~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~  314 (361)
T 2vqa_A          246 MRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFND  314 (361)
T ss_dssp             EEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESS
T ss_pred             ccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECC
Confidence            456799987 99999999999999965555555789999999999999999999877778888877764

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=98.88  E-value=5.3e-09  Score=88.31  Aligned_cols=67  Identities=21%  Similarity=0.283  Sum_probs=56.6

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ....|+|..+|++||++|++.+.+.+.+++.+.+.+++||++++|+|+.|++.+.++ .+.++-+|..
T Consensus        91 ~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~-~~~~~~v~~~  157 (385)
T 1j58_A           91 IRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEE-GAEFLLVFDD  157 (385)
T ss_dssp             EEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEE-EEEEEEEESC
T ss_pred             CCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEEECCCCeEEEEECCC-CEEEEEEECC
Confidence            467899999999999999999999876677666799999999999999999987653 4666666654

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=98.88  E-value=6.3e-09  Score=79.96  Aligned_cols=75  Identities=15%  Similarity=0.193  Sum_probs=56.7

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC-c
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN-Y  143 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~-~  143 (160)
                      .-.+++.|+.          ....|.|..+|+.||++|++.+.+.+.++. ..+.+++||++++|+|+.|++.+..+. .
T Consensus        43 ~~~~~l~pg~----------~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~-~~~~l~~GDv~~~P~g~~H~~~N~g~~~~  111 (178)
T 1dgw_A           43 VLEYCSKPNT----------LLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIKIQAGTPFYLINPDNNQN  111 (178)
T ss_dssp             EEEEEECTTE----------EEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEEECTTCCEEEEECCSSSC
T ss_pred             EEEEEecCCc----------EecCcCCCCCEEEEEEeEEEEEEEEeCCCc-EEEEECCCCEEEECCCCeEEEEeCCCCCC
Confidence            4456666653          357883346999999999999999743322 278999999999999999999987654 6


Q ss_pred             EEEEEEe
Q 031374          144 VKVMQIL  150 (160)
Q Consensus       144 ~~~ir~f  150 (160)
                      +.++-++
T Consensus       112 l~~l~v~  118 (178)
T 1dgw_A          112 LRILKFA  118 (178)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7776654

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.88  E-value=3.4e-09  Score=90.58  Aligned_cols=61  Identities=25%  Similarity=0.484  Sum_probs=54.6

Q ss_pred             cCcccceecCcceEEEEeeeeE-EEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEE
Q 031374           83 KNFYTEHIHADEEIRYCLEGSG-YFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ  148 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g-~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir  148 (160)
                      +.....|.|..+|++||++|+| ++.++++     ++.+++||+|++|+|..|.+.++++..++.+-
T Consensus       113 G~~~~~HrH~~~ev~~VleG~G~~~~vdG~-----~~~~~~GD~v~iP~g~~H~~~N~gde~l~~l~  174 (368)
T 3nw4_A          113 RETAPEHRHSQNAFRFVVEGEGVWTVVNGD-----PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWID  174 (368)
T ss_dssp             TCEEEEEEESSCEEEECSSCEEEEEEETTE-----EEEEETTCEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             CCccCceecccceEEEEEecceEEEEECCE-----EEEEeCCCEEEECCCCcEEeEeCCCCCeEEEE
Confidence            3557889999999999999999 5888888     99999999999999999999998888887764

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.88  E-value=6.2e-09  Score=85.59  Aligned_cols=63  Identities=30%  Similarity=0.560  Sum_probs=55.3

Q ss_pred             CcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      .....|+|. .+|++||++|++.+.++++     ++.+++||++++|+|+.|++.+.++ .++++.+|..
T Consensus       229 ~~~~~h~H~~~~e~~~vl~G~~~~~i~~~-----~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~  292 (337)
T 1y3t_A          229 DRIVDHYHEYHTETFYCLEGQMTMWTDGQ-----EIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVP  292 (337)
T ss_dssp             CCCCCEECSSCEEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEES
T ss_pred             CCCCCcCCCCCcEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcC
Confidence            345679998 6999999999999999987     8999999999999999999998776 7777777643

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.87  E-value=6.9e-09  Score=85.31  Aligned_cols=61  Identities=21%  Similarity=0.391  Sum_probs=53.1

Q ss_pred             cccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           85 FYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        85 ~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      ....|+|. .+|++||++|++.+.++++     .+.+++||++++|+|+.|.+.+.++ .++++.++.
T Consensus        58 ~~~~h~H~~~~e~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~p~~~~H~~~n~~~-~~~~~~~~~  119 (337)
T 1y3t_A           58 AFPLHVHKDTHEGILVLDGKLELTLDGE-----RYLLISGDYANIPAGTPHSYRMQSH-RTRLVSYTM  119 (337)
T ss_dssp             EEEEEECTTCCEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECST-TEEEEEEEE
T ss_pred             CCCceeCCCceEEEEEEECEEEEEECCE-----EEEECCCCEEEECCCCcEEEEECCC-CeEEEEEEC
Confidence            35689999 8999999999999999887     8999999999999999999998765 466666544

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=98.86  E-value=1.4e-08  Score=89.98  Aligned_cols=68  Identities=16%  Similarity=0.274  Sum_probs=58.5

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecCCC-cEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDESD-QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~-~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      +.....|+|+ ..|++||++|++.+.+.+.++ +.+...+++||+++||+|..|+..+ .+..+.++.|+.
T Consensus       382 G~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~viP~G~~H~~~N-g~e~l~~l~f~~  451 (510)
T 3c3v_A          382 NALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKS-QSDNFEYVAFKT  451 (510)
T ss_dssp             TCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEE-CSSEEEEEEEES
T ss_pred             CceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEEECCCCeEEEEe-CCCCEEEEEEEC
Confidence            3567899998 689999999999999987654 5677789999999999999999998 467788888884

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.85  E-value=7.5e-09  Score=89.19  Aligned_cols=62  Identities=19%  Similarity=0.257  Sum_probs=54.4

Q ss_pred             cCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC-CCcEEEEEE
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT-SNYVKVMQI  149 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~-~~~~~~ir~  149 (160)
                      +.....|.|..+|++||++|+|++.|+++     ++.+++||+|++|+|..|.+.+++ +..++.+.+
T Consensus       304 G~~~~~HrH~~~~v~~VleG~G~~~V~ge-----~~~~~~GD~~~iP~g~~H~~~N~g~~e~~~ll~i  366 (394)
T 3bu7_A          304 GEHTKAHRHTGNVIYNVAKGQGYSIVGGK-----RFDWSEHDIFCVPAWTWHEHCNTQERDDACLFSF  366 (394)
T ss_dssp             TCBCCCEEESSCEEEEEEECCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECCSSCCEEEEEE
T ss_pred             CCcCCCcccCCcEEEEEEeCeEEEEECCE-----EEEEeCCCEEEECCCCeEEeEeCCCCCCeEEEEe
Confidence            45578899999999999999999999988     999999999999999999999875 466666654

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.83  E-value=7.6e-09  Score=83.44  Aligned_cols=59  Identities=19%  Similarity=0.121  Sum_probs=50.1

Q ss_pred             ccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC-CcEEEEEE
Q 031374           86 YTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS-NYVKVMQI  149 (160)
Q Consensus        86 ~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~-~~~~~ir~  149 (160)
                      ...|.|. .+|++||++|++.+.++++     .+.+++||.|.+|+|+.|++.+.++ ..++++.+
T Consensus       192 ~~~h~H~~~~E~~~Vl~G~~~~~i~~~-----~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l~~  252 (261)
T 1rc6_A          192 HGYIETHVQEHGAYILSGQGVYNLDNN-----WIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYS  252 (261)
T ss_dssp             BEEEEEESSCEEEEEEESEEEEESSSC-----EEEEETTCEEEECSSEEEEEEEC----CEEEEEE
T ss_pred             cCcccCCCceEEEEEEEeEEEEEECCE-----EEEeCCCCEEEECCCCcEEeEeCCCCcCEEEEEE
Confidence            5678885 7899999999999999988     8999999999999999999998776 77777654

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=98.83  E-value=1.2e-08  Score=78.86  Aligned_cols=56  Identities=25%  Similarity=0.340  Sum_probs=48.4

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      ..+.+|.|+.+|++|+++|+..+.+.+. ++--.+.+++||+++||+|++|+-...+
T Consensus        46 ~r~d~H~h~~dE~FyvlkG~m~i~v~d~-g~~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           46 HRTDYHDDPLEEFFYQLRGNAYLNLWVD-GRRERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             CCCCEEECSSCEEEEEEESCEEEEEEET-TEEEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             cCccCcCCCCceEEEEEeeEEEEEEEcC-CceeeEEECCCCEEEeCCCCCcCccccC
Confidence            4578999999999999999999999863 3344799999999999999999986543

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=98.82  E-value=1.5e-08  Score=88.47  Aligned_cols=77  Identities=13%  Similarity=0.158  Sum_probs=62.6

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC-CCc
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT-SNY  143 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~-~~~  143 (160)
                      .-.+++.|+.          ....|+|..+|++||++|++.+.+-+.++. ....+++||++++|+|+.|++.+.. +..
T Consensus        88 ~~~~~l~Pgg----------~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~~P~G~~H~~~N~g~~~~  156 (445)
T 2cav_A           88 VLEYCSKPNT----------LLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIKIQAGTPFYLINPDNNQN  156 (445)
T ss_dssp             EEEEEECSSE----------EEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEEECTTCCEEEEECCSSCC
T ss_pred             EEEEEECCCc----------CccCcCCCCceEEEEEeCEEEEEEEeCCCC-EEEEecCCCEEEECCCCcEEEEECCCCCC
Confidence            4456777653          467886778999999999999998644333 5889999999999999999999876 678


Q ss_pred             EEEEEEecC
Q 031374          144 VKVMQILSY  152 (160)
Q Consensus       144 ~~~ir~f~~  152 (160)
                      ++++.+|..
T Consensus       157 l~~l~v~~~  165 (445)
T 2cav_A          157 LRILKFAIT  165 (445)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            998888763

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=98.82  E-value=1.5e-08  Score=85.62  Aligned_cols=68  Identities=18%  Similarity=0.213  Sum_probs=56.0

Q ss_pred             cccceecCc-ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           85 FYTEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        85 ~~~~H~H~~-~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ....|+|.. +|++||++|++.+.+.+.+++--.+.+++||++++|+|..|++.+.++..+.++.++..
T Consensus       269 ~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~v~~~  337 (385)
T 1j58_A          269 MRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKD  337 (385)
T ss_dssp             EEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESS
T ss_pred             ccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEECCCCeEEEEECCCCCEEEEEEECC
Confidence            356799998 99999999999999983222112789999999999999999999877778888877654

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=98.81  E-value=2.9e-08  Score=76.27  Aligned_cols=56  Identities=11%  Similarity=0.003  Sum_probs=50.4

Q ss_pred             cceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEE
Q 031374           87 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM  147 (160)
Q Consensus        87 ~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~i  147 (160)
                      ..+.|..+|++||++|+..+.++++     .+.+++||.+.+|+|..|++.+..+..++++
T Consensus       104 ~~~~h~gEE~~yVLeG~v~vtl~g~-----~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll  159 (166)
T 2vpv_A          104 LSNSFRTYITFHVIQGIVEVTVCKN-----KFLSVKGSTFQIPAFNEYAIANRGNDEAKMF  159 (166)
T ss_dssp             EEECCSEEEEEEEEESEEEEEETTE-----EEEEETTCEEEECTTCEEEEEECSSSCEEEE
T ss_pred             CccCCCceEEEEEEEeEEEEEECCE-----EEEEcCCCEEEECCCCCEEEEECCCCCEEEE
Confidence            4477889999999999999999988     9999999999999999999999877766655

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.81  E-value=1.1e-08  Score=88.23  Aligned_cols=61  Identities=23%  Similarity=0.441  Sum_probs=54.3

Q ss_pred             cCcccceecCcceEEEEeeeeEEE-EEecCCCcEEEEEEcCCcEEEeCCCCeeeeee-CCCCcEEEEE
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYF-DVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL-DTSNYVKVMQ  148 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f-~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~-~~~~~~~~ir  148 (160)
                      +.....|.|...|++||++|+|.| .++++     ++.+++||+|++|+|..|...+ +++..++.+.
T Consensus       133 G~~~~~HrH~~~ev~~IleG~G~~t~v~G~-----~~~~~~GD~i~~P~g~~H~~~N~~gde~l~~l~  195 (394)
T 3bu7_A          133 GERAGAHRHAASALRFIMEGSGAYTIVDGH-----KVELGANDFVLTPNGTWHEHGILESGTECIWQD  195 (394)
T ss_dssp             TCBCCCEEESSCEEEEEEECSCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECTTCCCEEEEE
T ss_pred             CCCcCCccCCcceEEEEEEeeEEEEEECCE-----EEEEcCCCEEEECcCCCEEEEcCCCCCCEEEEE
Confidence            355788999988999999999977 88877     9999999999999999999999 8777777774

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=98.81  E-value=9.6e-09  Score=82.12  Aligned_cols=60  Identities=22%  Similarity=0.212  Sum_probs=52.4

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEE-EeCCCCeeeeeeCCCCcEEEEEE
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLI-VLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli-~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      ....|+|+.+|++||++|++.+.++++     ...+++||.| ++|+|+.|++.+.++..+.++-+
T Consensus        46 ~~~~H~H~~~e~~~Vl~G~~~~~~~~~-----~~~l~~Gd~i~~ip~~~~H~~~n~~~~~~~~l~i  106 (243)
T 3h7j_A           46 NVEPHQHKEVQIGMVVSGELMMTVGDV-----TRKMTALESAYIAPPHVPHGARNDTDQEVIAIDI  106 (243)
T ss_dssp             EEEEECCSSEEEEEEEESEEEEEETTE-----EEEEETTTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             ccCCEECCCcEEEEEEEeEEEEEECCE-----EEEECCCCEEEEcCCCCcEeeEeCCCCcEEEEEE
Confidence            467899999999999999999999887     8999999999 59999999999877666665543

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.80  E-value=2.2e-08  Score=80.38  Aligned_cols=70  Identities=20%  Similarity=0.308  Sum_probs=57.5

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~  143 (160)
                      ..-++++.|+.         .....|.|..+|.+|||+|++.|.++++     .+.+++||.+.++++.+|+|.+.....
T Consensus       166 ~~~~~tl~PG~---------~~~~~~~h~~ee~~~vLeG~~~~~~~~~-----~~~l~~GD~~~~~~~~pH~~~n~g~~~  231 (246)
T 1sfn_A          166 MVSTMSFAPGA---------SLPYAEVHYMEHGLLMLEGEGLYKLEEN-----YYPVTAGDIIWMGAHCPQWYGALGRNW  231 (246)
T ss_dssp             EEEEEEECTTC---------BCSSCBCCSSCEEEEEEECEEEEEETTE-----EEEEETTCEEEECTTCCEEEEEESSSC
T ss_pred             EEEEEEECCCC---------ccCcccCCCceEEEEEEECEEEEEECCE-----EEEcCCCCEEEECCCCCEEEEcCCCCC
Confidence            35567777763         1122366889999999999999999988     899999999999999999999877777


Q ss_pred             EEEE
Q 031374          144 VKVM  147 (160)
Q Consensus       144 ~~~i  147 (160)
                      ++.+
T Consensus       232 ~~yl  235 (246)
T 1sfn_A          232 SKYL  235 (246)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7655

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.79  E-value=1.5e-08  Score=76.85  Aligned_cols=52  Identities=21%  Similarity=0.503  Sum_probs=44.4

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      |..+|+.|||+|++.+.++++     .+.+++||.++||+|+.|++.+.  ..++++-+
T Consensus        82 ~~~eE~~yVLeG~~~l~i~g~-----~~~l~~GD~i~iP~G~~h~~~n~--~~a~~l~V  133 (151)
T 4axo_A           82 LNYDEIDYVIDGTLDIIIDGR-----KVSASSGELIFIPKGSKIQFSVP--DYARFIYV  133 (151)
T ss_dssp             CSSEEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCEEEEEEE--EEEEEEEE
T ss_pred             CCCcEEEEEEEeEEEEEECCE-----EEEEcCCCEEEECCCCEEEEEeC--CCEEEEEE
Confidence            467899999999999999877     89999999999999999999885  34444433

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=98.79  E-value=8.9e-09  Score=83.16  Aligned_cols=65  Identities=20%  Similarity=0.158  Sum_probs=53.7

Q ss_pred             ccceecC-cceEEEEeeeeEEEEE--------ecC-------CCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEE-EE
Q 031374           86 YTEHIHA-DEEIRYCLEGSGYFDV--------RDE-------SDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKV-MQ  148 (160)
Q Consensus        86 ~~~H~H~-~~Ei~yvl~G~g~f~i--------~~~-------~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~-ir  148 (160)
                      ...|+|. .+|++||++|++.+.+        ++.       +++...+.+++||++++|+|+.|.|.+.+....++ +.
T Consensus        56 ~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~~~~~~~~~l~  135 (239)
T 2xlg_A           56 PMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVFV  135 (239)
T ss_dssp             CCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECCSSSCEEEEEE
T ss_pred             CCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEE
Confidence            4789998 7999999999999999        543       12355789999999999999999999877666777 55


Q ss_pred             Ee
Q 031374          149 IL  150 (160)
Q Consensus       149 ~f  150 (160)
                      ++
T Consensus       136 ~~  137 (239)
T 2xlg_A          136 WM  137 (239)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=98.79  E-value=3.5e-08  Score=85.39  Aligned_cols=77  Identities=14%  Similarity=0.202  Sum_probs=62.5

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC-CCC
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD-TSN  142 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~-~~~  142 (160)
                      ..-.+++.|+.          ....|.|..+|++||++|+|.+.+-+. +.-....+++||+++||+|+.|++.+. .+.
T Consensus        50 s~~~~~l~PGg----------~~~pHh~~a~E~~yVl~G~g~v~~v~~-~~~~~~~l~~GDv~~iP~G~~H~~~N~gg~e  118 (416)
T 1uij_A           50 RIVQFQSKPNT----------ILLPHHADADFLLFVLSGRAILTLVNN-DDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQ  118 (416)
T ss_dssp             EEEEEEECTTE----------EEEEEEESEEEEEEEEESCEEEEEECS-SCEEEEEECTTEEEEECTTCEEEEEECCSSC
T ss_pred             EEEEEEeccCc----------CcccccCCCceEEEEEeeEEEEEEEEC-CCCeEEEecCCCEEEECCCCeEEEEecCCCC
Confidence            35567777753          467896678999999999999998543 344488999999999999999999987 478


Q ss_pred             cEEEEEEec
Q 031374          143 YVKVMQILS  151 (160)
Q Consensus       143 ~~~~ir~f~  151 (160)
                      .+.++.++.
T Consensus       119 ~l~~l~~~~  127 (416)
T 1uij_A          119 NLKMIWLAI  127 (416)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEec
Confidence            888888864

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=98.78  E-value=3.7e-08  Score=85.69  Aligned_cols=77  Identities=12%  Similarity=0.191  Sum_probs=61.9

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC-CC
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT-SN  142 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~-~~  142 (160)
                      ..-.+++.|+.          ....|+|..+|++||++|+|.+.+-+. +.-....+++||++++|+|+.|++.++. +.
T Consensus        62 s~~~~~l~PGg----------~~~pHh~~a~Ei~yVl~G~g~v~~v~~-~~~~~~~l~~GDv~~iP~G~~H~~~N~g~~e  130 (434)
T 2ea7_A           62 RVVEFKSKPNT----------LLLPHHADADFLLVVLNGTAVLTLVNP-DSRDSYILEQGHAQKIPAGTTFFLVNPDDNE  130 (434)
T ss_dssp             EEEEEEECTTE----------EEEEEEESEEEEEEEEESEEEEEEECS-SCEEEEEEETTEEEEECTTCEEEEEECCSSC
T ss_pred             EEEEEEecCCc----------CccCccCCCceEEEEEecEEEEEEEeC-CCCEEEEeCCCCEEEECCCccEEEEeCCCCC
Confidence            34567777753          467895568999999999999999643 3455889999999999999999999876 67


Q ss_pred             cEEEEEEec
Q 031374          143 YVKVMQILS  151 (160)
Q Consensus       143 ~~~~ir~f~  151 (160)
                      .+.++.+|.
T Consensus       131 ~l~~l~~~~  139 (434)
T 2ea7_A          131 NLRIIKLAI  139 (434)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEEEEec
Confidence            888887763

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=98.77  E-value=1.4e-08  Score=78.33  Aligned_cols=73  Identities=19%  Similarity=0.276  Sum_probs=61.1

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEe-cCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVR-DESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~-~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      ..-++++.|+.          ....|.|..+|+.||++|++.+.++ ++     .+.+++||.+ +|+|+.|++.+..+.
T Consensus        80 ~~~~v~l~PG~----------~~~~H~H~~eE~~~VLeGel~l~ld~ge-----~~~L~~GDsi-~~~g~~H~~~N~g~~  143 (172)
T 3es1_A           80 VIRVVDMLPGK----------ESPMHRTNSIDYGIVLEGEIELELDDGA-----KRTVRQGGII-VQRGTNHLWRNTTDK  143 (172)
T ss_dssp             EEEEEEECTTC----------BCCCBCCSEEEEEEEEESCEEEECGGGC-----EEEECTTCEE-EECSCCBEEECCSSS
T ss_pred             EEEEEEECCCC----------CCCCeecCceEEEEEEeCEEEEEECCCe-----EEEECCCCEE-EeCCCcEEEEeCCCC
Confidence            34556677653          2478999999999999999999998 67     8999999999 999999999988777


Q ss_pred             cEEEEEEecC
Q 031374          143 YVKVMQILSY  152 (160)
Q Consensus       143 ~~~~ir~f~~  152 (160)
                      .++++-++..
T Consensus       144 ~ar~l~V~~P  153 (172)
T 3es1_A          144 PCRIAFILIE  153 (172)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEcC
Confidence            8888877655

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.76  E-value=1.9e-08  Score=82.42  Aligned_cols=59  Identities=15%  Similarity=0.214  Sum_probs=51.8

Q ss_pred             cceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           87 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        87 ~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      ..|.|..+|++||++|++.+.++++     .+.+++||.+.+|+|+.|++.+.++..++++.+.
T Consensus        84 ~~h~H~~eE~~~Vl~G~l~v~v~g~-----~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~l~v~  142 (278)
T 1sq4_A           84 PEQDPNAEAVLFVVEGELSLTLQGQ-----VHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIR  142 (278)
T ss_dssp             CCCCTTEEEEEEEEESCEEEEESSC-----EEEECTTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             CCcCCCceEEEEEEeCEEEEEECCE-----EEEECCCCEEEECCCCcEEEEECCCCCEEEEEEE
Confidence            4578999999999999999999988     9999999999999999999998766666665443

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.73  E-value=2.7e-08  Score=83.87  Aligned_cols=63  Identities=21%  Similarity=0.347  Sum_probs=50.9

Q ss_pred             ceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           88 EHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        88 ~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      .|+|. .+|++||++|++.+.+++.++..-.+.+++||+|++|+|+.|++.+.++.. +++-++.
T Consensus        65 ~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l~v~~  128 (350)
T 1juh_A           65 PHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMTGVIV  128 (350)
T ss_dssp             CEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EEEEEEE
T ss_pred             cccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEEEEEc
Confidence            79998 899999999999999998222212899999999999999999999865544 5555543

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.73  E-value=5.8e-08  Score=81.84  Aligned_cols=63  Identities=16%  Similarity=0.225  Sum_probs=53.3

Q ss_pred             cCcccceecCcceEEEEeeeeEEEEEec-CCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYFDVRD-ESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f~i~~-~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      +.....|.|+.+++.||++|++.+.+++ +     ++.+++||.|+||+|++|.+.+.+. ..+++.+.+
T Consensus       262 g~~~~~h~~~~~~~~~vleG~~~i~i~g~~-----~~~l~~Gd~~~iPag~~h~~~~~~~-~~~~l~~~~  325 (350)
T 1juh_A          262 TVTVPTWSFPGACAFQVQEGRVVVQIGDYA-----ATELGSGDVAFIPGGVEFKYYSEAY-FSKVLFVSS  325 (350)
T ss_dssp             TSCCCCBCCSSCEEEEEEESCEEEEETTSC-----CEEECTTCEEEECTTCCEEEEESSS-SEEEEEEEE
T ss_pred             CCCCCcccCCCcEEEEEEeeEEEEEECCeE-----EEEeCCCCEEEECCCCCEEEEecCC-eEEEEEEec
Confidence            3457789999999999999999999998 6     8999999999999999999998754 444554443

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=98.71  E-value=4e-08  Score=86.47  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=65.4

Q ss_pred             CCceeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCc----------------------EEEE
Q 031374           61 GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQ----------------------WIRI  118 (160)
Q Consensus        61 gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~----------------------~~~~  118 (160)
                      |+.. -.++|.|.          .+...|+|...|++||++|+|.+.+-..++.                      ....
T Consensus        47 gvs~-~r~~l~Pg----------gl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~d~~qk~~  115 (476)
T 1fxz_A           47 GVAL-SRCTLNRN----------ALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIY  115 (476)
T ss_dssp             TCEE-EEEEECTT----------EEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEE
T ss_pred             ceEE-EEEEEcCC----------CEecceecCCceEEEEEecEEEEEEEcCCCcchhhccccccccccccccccccceEE
Confidence            6643 34677765          3567899999999999999999999864432                      1257


Q ss_pred             EEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374          119 WIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus       119 ~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      .+++||+|.||+|+.||+.++.+..+.++.+|.
T Consensus       116 ~l~~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d  148 (476)
T 1fxz_A          116 NFREGDLIAVPTGVAWWMYNNEDTPVVAVSIID  148 (476)
T ss_dssp             EECTTEEEEECTTCEEEEEECSSSCEEEEEEEC
T ss_pred             EEeCCCEEEECCCCcEEEEeCCCCCEEEEEEec
Confidence            899999999999999999998888999998876

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.69  E-value=4.7e-08  Score=72.04  Aligned_cols=52  Identities=29%  Similarity=0.400  Sum_probs=44.4

Q ss_pred             CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      ..+|+.||++|++.+.++++     .+.+++||.|++|+|..|.+...+  .++.+-++
T Consensus        74 ~~~E~~~VLeG~~~l~~~g~-----~~~l~~GD~i~~p~g~~h~~~~~~--~~~~l~v~  125 (133)
T 2pyt_A           74 NYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFGTPT--SVRFLYVA  125 (133)
T ss_dssp             SSEEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCEEEEEEEE--EEEEEEEE
T ss_pred             CCCEEEEEEECEEEEEECCE-----EEEECCCcEEEECCCCEEEEEeCC--CEEEEEEE
Confidence            57899999999999999987     899999999999999999998643  45555444

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=98.67  E-value=3e-08  Score=72.35  Aligned_cols=48  Identities=23%  Similarity=0.302  Sum_probs=42.2

Q ss_pred             ceecCcceEEEEeeeeEEEEE-ecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           88 EHIHADEEIRYCLEGSGYFDV-RDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        88 ~H~H~~~Ei~yvl~G~g~f~i-~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      .|.|..+|+.|||+|++.+.+ +++     .+.+++||.+++|+|..|.+.+.+
T Consensus        63 ~~~~~~~E~~~Vl~G~~~l~~~~g~-----~~~l~~GD~~~ip~g~~h~~~~~~  111 (123)
T 3bcw_A           63 SNTTGYIEYCHIIEGEARLVDPDGT-----VHAVKAGDAFIMPEGYTGRWEVDR  111 (123)
T ss_dssp             CCCTTEEEEEEEEEEEEEEECTTCC-----EEEEETTCEEEECTTCCCEEEEEE
T ss_pred             eEcCCCcEEEEEEEEEEEEEECCCe-----EEEECCCCEEEECCCCeEEEEECC
Confidence            466666899999999999999 555     799999999999999999998754

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=98.67  E-value=5.7e-08  Score=85.12  Aligned_cols=81  Identities=16%  Similarity=0.203  Sum_probs=64.1

Q ss_pred             CCceeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCc-E--------------------EEEE
Q 031374           61 GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQ-W--------------------IRIW  119 (160)
Q Consensus        61 gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~-~--------------------~~~~  119 (160)
                      |.. .-.++|.|.          .+...|+|...|++||++|+|.+.+-..++. -                    ....
T Consensus        62 gvs-~~r~~i~pg----------gl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~  130 (459)
T 2e9q_A           62 GVN-MIRHTIRPK----------GLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRP  130 (459)
T ss_dssp             TEE-EEEEEECTT----------EEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEE
T ss_pred             ceE-EEEEEEcCC----------CEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEE
Confidence            543 334677765          3568999999999999999999999644321 1                    1458


Q ss_pred             EcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374          120 IKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus       120 v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      +++||+++||+|+.||+.++.+..+.++.+|..
T Consensus       131 l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~  163 (459)
T 2e9q_A          131 FREGDLLVVPAGVSHWMYNRGQSDLVLIVFADT  163 (459)
T ss_dssp             EETTEEEEECTTCCEEEEECSSSCEEEEEEEES
T ss_pred             ecCCCEEEECCCCCEEEEeCCCCCEEEEEEecC
Confidence            999999999999999999988889999988763

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=98.66  E-value=6.7e-08  Score=85.38  Aligned_cols=81  Identities=14%  Similarity=0.128  Sum_probs=64.6

Q ss_pred             cCCceeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCC-----------------c--------
Q 031374           60 RGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESD-----------------Q--------  114 (160)
Q Consensus        60 ~gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~-----------------~--------  114 (160)
                      .|+ ..-.++|.|..          +...|+|+..|++||++|+|.+.+-..++                 .        
T Consensus        43 ~gv-~~~r~~i~pgg----------l~~Ph~~~~~~i~yV~~G~g~vg~v~pgc~et~~~~~~~~~~~~~~~~~~~~d~~  111 (493)
T 2d5f_A           43 AGV-TVSKRTLNRNG----------LHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSH  111 (493)
T ss_dssp             HTC-EEEEEEECTTE----------EEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC-------------CSEEE
T ss_pred             CCE-EEEEEEeCCCc----------EeCceecCCCeEEEEEeCEEEEEEEeCCCcccccccccccccccccccccccccc
Confidence            465 44567788753          46899999999999999999999884221                 0        


Q ss_pred             EEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374          115 WIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus       115 ~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      .-...+++||+|+||+|+.||+.++.+..+.++.+|.
T Consensus       112 qkv~~l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d  148 (493)
T 2d5f_A          112 QKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLD  148 (493)
T ss_dssp             SCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEEC
T ss_pred             ceEEEecCCCEEEECCCCcEEEEeCCCCCEEEEEEec
Confidence            0134899999999999999999998888999998876

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.66  E-value=6.7e-08  Score=79.12  Aligned_cols=70  Identities=17%  Similarity=0.269  Sum_probs=57.9

Q ss_pred             eeeeeeCCCcccCHHHHhcCccc-ceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYT-EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~-~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~  143 (160)
                      ..++++.|+.          ... .|.|..+|.+|||+|+|.|.++++     .+.|++||+|.+++|..|+|.+.....
T Consensus       193 ~~~~~l~pG~----------~i~~~~~h~~e~~~~il~G~~~~~~~~~-----~~~v~~GD~~~~~~~~~h~~~n~g~~~  257 (278)
T 1sq4_A          193 VNIVNFEPGG----------VIPFAETHVMEHGLYVLEGKAVYRLNQD-----WVEVEAGDFMWLRAFCPQACYSGGPGR  257 (278)
T ss_dssp             EEEEEECSSS----------EESCCCCCSEEEEEEEEECEEEEEETTE-----EEEEETTCEEEEEESCCEEEECCSSSC
T ss_pred             EEEEEECCCC----------CcCCCCCCCccEEEEEEeCEEEEEECCE-----EEEeCCCCEEEECCCCCEEEEcCCCCC
Confidence            4567777763          233 466888999999999999999988     899999999999999999999877777


Q ss_pred             EEEEEE
Q 031374          144 VKVMQI  149 (160)
Q Consensus       144 ~~~ir~  149 (160)
                      ++.|.+
T Consensus       258 ~~yl~~  263 (278)
T 1sq4_A          258 FRYLLY  263 (278)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            776643

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=98.66  E-value=1.2e-07  Score=84.18  Aligned_cols=68  Identities=13%  Similarity=0.264  Sum_probs=56.5

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecCCC-cEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDESD-QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~-~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      +.....|+|+ ..|+.||++|++.+.+-+.++ +++...|++||+++||+|..|...++ ++.+.++.|.+
T Consensus       404 Ggm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v~P~G~~H~~~ag-~e~l~flaF~s  473 (531)
T 3fz3_A          404 NGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAG-NQGFEYFAFKT  473 (531)
T ss_dssp             TCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEEEES
T ss_pred             CccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEEECCCCeEEEecC-CCCEEEEEEec
Confidence            3567899998 589999999999999987654 67899999999999999999976655 55677775554

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=98.64  E-value=8e-08  Score=71.87  Aligned_cols=62  Identities=11%  Similarity=0.138  Sum_probs=49.2

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecCCCc---EEEEEEcCCcEEEeCCCCeeeeeeCCCCcE
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQ---WIRIWIKAGDLIVLPAGIYHRFTLDTSNYV  144 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~---~~~~~v~~GDli~iP~g~~H~f~~~~~~~~  144 (160)
                      ...-..|.|. .+|++++++|++.+.+++.++.   --.+.+++|++++||.|+.|...+.++..+
T Consensus        39 ~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~e~~v  104 (140)
T 3d0j_A           39 EGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKDTKM  104 (140)
T ss_dssp             TTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEECTTCEE
T ss_pred             ccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCCCceEE
Confidence            3455789997 6999999999999999943110   116999999999999999999998765433

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=98.64  E-value=1.7e-07  Score=72.49  Aligned_cols=58  Identities=29%  Similarity=0.349  Sum_probs=49.0

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCC---CcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDES---DQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~---~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      ..+.+|.|+.+|++|+++|+....+.+.+   .+.-.+.+++||++++|+|++|+-...++
T Consensus        45 ~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~~e  105 (176)
T 1zvf_A           45 ERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFAD  105 (176)
T ss_dssp             CCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTT
T ss_pred             cCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCcccCC
Confidence            45789988999999999999999999732   14557999999999999999999866543

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=98.63  E-value=6.9e-08  Score=81.67  Aligned_cols=59  Identities=20%  Similarity=0.175  Sum_probs=50.6

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      .....|+|...|++||++|+|.+.|+++     ++.+++||+++||++..|.+.++  ..+..+++
T Consensus       279 ~~~~~H~h~~~ev~~v~~G~g~~~v~~~-----~~~~~~GD~~~vP~~~~H~~~n~--e~~~l~~~  337 (354)
T 2d40_A          279 FASRVARTTDSTIYHVVEGSGQVIIGNE-----TFSFSAKDIFVVPTWHGVSFQTT--QDSVLFSF  337 (354)
T ss_dssp             CBCCCBEESSCEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCCEEEEEE--EEEEEEEE
T ss_pred             CCCCceecCCcEEEEEEeCeEEEEECCE-----EEEEcCCCEEEECCCCeEEEEeC--CCEEEEEE
Confidence            4457799998899999999999999877     99999999999999999999885  34555544

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=98.62  E-value=1.9e-07  Score=81.79  Aligned_cols=69  Identities=10%  Similarity=0.173  Sum_probs=58.4

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecCCC-cEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDESD-QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~-~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      +.....|+|. ..|+.||++|++.+.+-+.++ +.+.-.|++||+++||+|..|+..++ +..+.++.+|..
T Consensus       332 G~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v~P~G~~H~~~ng-~~~~~~l~~~~s  402 (459)
T 2e9q_A          332 NAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVIKRAS-DRGFEWIAFKTN  402 (459)
T ss_dssp             TCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEE-EEEEEEEEEESS
T ss_pred             CcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEEECCCCEEEEEeC-CCCeEEEEEecC
Confidence            4668899998 579999999999999987654 56667799999999999999998885 456888888855

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=98.61  E-value=1e-07  Score=82.09  Aligned_cols=77  Identities=14%  Similarity=0.169  Sum_probs=64.2

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcE------EEeCCCCeeeee
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDL------IVLPAGIYHRFT  137 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDl------i~iP~g~~H~f~  137 (160)
                      ..-.+++.|..          +...|+|..+|++||++|+|.+.+-+.+++ ....+++||+      ++||+|+.|+..
T Consensus        53 s~~~~~l~pgg----------~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~-~~~~l~~GDv~~~~~~~~iP~G~~h~~~  121 (397)
T 2phl_A           53 RLVEFRSKPET----------LLLPQQADAELLLVVRSGSAILVLVKPDDR-REYFFLTSDNPIFSDHQKIPAGTIFYLV  121 (397)
T ss_dssp             EEEEEEECSSE----------EEEEEEESEEEEEEEEESEEEEEEEETTTE-EEEEEEESSCTTSCSEEEECTTCEEEEE
T ss_pred             EEEEEEECCCc----------CccCEecCCCeEEEEEeeeEEEEEEeCCCc-EEEEECCCCcccccceEEECCCCcEEEE
Confidence            34567777753          457889999999999999999999766555 3789999999      999999999998


Q ss_pred             eCC-CCcEEEEEEec
Q 031374          138 LDT-SNYVKVMQILS  151 (160)
Q Consensus       138 ~~~-~~~~~~ir~f~  151 (160)
                      +.. +..+.++.+|.
T Consensus       122 N~g~~~~l~~i~~~~  136 (397)
T 2phl_A          122 NPDPKEDLRIIQLAM  136 (397)
T ss_dssp             ECCSSCCEEEEEEEE
T ss_pred             eCCCCCCeEEEEeec
Confidence            766 67899998875

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=98.60  E-value=2.4e-07  Score=79.78  Aligned_cols=68  Identities=15%  Similarity=0.137  Sum_probs=58.7

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecC------CC-cEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDE------SD-QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~------~~-~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      +.....|+|+ ..|+.||++|+|.+.+-+.      ++ +.+...+++||+++||+|..|+..+++  .+.++.|+..
T Consensus       249 G~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~vvP~G~~h~~~n~~--~l~~l~f~~~  324 (397)
T 2phl_A          249 GALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATS--NVNFTGFGIN  324 (397)
T ss_dssp             TEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESS--SEEEEEEEES
T ss_pred             CcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEEECCCCeEEEEeCC--CeEEEEEECC
Confidence            3568899998 6899999999999999876      34 789999999999999999999998885  5777777654

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=98.59  E-value=1.4e-07  Score=83.62  Aligned_cols=82  Identities=18%  Similarity=0.233  Sum_probs=65.8

Q ss_pred             cCCceeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCc-------------------------
Q 031374           60 RGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQ-------------------------  114 (160)
Q Consensus        60 ~gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~-------------------------  114 (160)
                      .|+. .-.++|.|.          .+...|+|...|++||++|+|.+.+-..++.                         
T Consensus        46 ~gvs-~~r~~i~p~----------gl~lPh~~~a~~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~~~~~~  114 (510)
T 3c3v_A           46 AGVA-LSRLVLRRN----------ALRRPFYSNAPQEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQSQRPPRRLQEE  114 (510)
T ss_dssp             HTCE-EEEEEECTT----------EEEEEEECSSCEEEEEEECCEEEEEECTTCCCCEEEECCC----------------
T ss_pred             CcEE-EEEEEECCC----------CCccceecCCCeEEEEEeCEEEEEEEeCCCcccccccccccccccccccccccccc
Confidence            4765 445677765          3568899999999999999999999864320                         


Q ss_pred             ----------EEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374          115 ----------WIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus       115 ----------~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                                .....+++||+|.||+|+.||+.++.+..+.++.+|..
T Consensus       115 ~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~  162 (510)
T 3c3v_A          115 DQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDT  162 (510)
T ss_dssp             ----CEEEEESCCEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECT
T ss_pred             ccccccccccceEEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeCC
Confidence                      01268999999999999999999988889999988754

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=98.59  E-value=1.3e-07  Score=83.02  Aligned_cols=81  Identities=16%  Similarity=0.254  Sum_probs=64.7

Q ss_pred             CCceeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCC-cEE-----------------------
Q 031374           61 GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESD-QWI-----------------------  116 (160)
Q Consensus        61 gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~-~~~-----------------------  116 (160)
                      |+... .++|.|.          .+...|+|...|++||++|+|.+.+-..+. +-+                       
T Consensus        49 gvs~~-R~~i~P~----------gl~~Ph~h~a~ei~yV~qG~g~~g~v~pgc~etf~~~~~~~~~~~~~~~~~~~~~~~  117 (465)
T 3qac_A           49 GVSVI-RRTIEPH----------GLLLPSFTSAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGEDERIREQGSRKF  117 (465)
T ss_dssp             TCEEE-EEEECTT----------EEEEEEEESSCEEEEEEECEEEEEEECTTCCCCC-----------------------
T ss_pred             ceEEE-EEEEcCC----------cCcccEEcCCCEEEEEEECcEEEEEecCCCCceeecchhcccccccccccccccccc
Confidence            76544 3566765          357899999999999999999999864321 111                       


Q ss_pred             -------------EEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374          117 -------------RIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus       117 -------------~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                                   ...+++||+|.||+|+.||+.++.+..+.++.+|..
T Consensus       118 ~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~  166 (465)
T 3qac_A          118 GMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDT  166 (465)
T ss_dssp             -------CCCCCCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEECT
T ss_pred             ccccccccccccceeeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcC
Confidence                         358999999999999999999988899999988765

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=98.58  E-value=2.8e-07  Score=79.73  Aligned_cols=67  Identities=15%  Similarity=0.168  Sum_probs=56.8

Q ss_pred             CcccceecC-cceEEEEeeeeEEEEEecCCC--------------cEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEE
Q 031374           84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDESD--------------QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ  148 (160)
Q Consensus        84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~--------------~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir  148 (160)
                      .....|+|+ ..|+.||++|+|++.+-+.++              +.+.-.+++||+++||+|..|+..++  ..+.++.
T Consensus       260 ~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~l~  337 (416)
T 1uij_A          260 ALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNAT--SNLNFLA  337 (416)
T ss_dssp             EEEEEEEESSCEEEEEEEESEEEEEEEEEC------------CCEEEEEEEEETTCEEEECTTCCEEEEES--SSEEEEE
T ss_pred             cEecceEcCCCcEEEEEEeeEEEEEEEcCCCccccccccccccceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEE
Confidence            557899998 689999999999999987654              36667999999999999999999888  3688888


Q ss_pred             EecC
Q 031374          149 ILSY  152 (160)
Q Consensus       149 ~f~~  152 (160)
                      ||..
T Consensus       338 f~~~  341 (416)
T 1uij_A          338 FGIN  341 (416)
T ss_dssp             EEET
T ss_pred             EEcC
Confidence            8754

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=98.58  E-value=5.1e-08  Score=68.09  Aligned_cols=63  Identities=16%  Similarity=0.137  Sum_probs=51.5

Q ss_pred             cccceecCc-ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           85 FYTEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        85 ~~~~H~H~~-~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      ....|.|.. .|+++|++|++.+...+  +..-.+.+++||.+.+|+|+.|+..+..+..+.+|.+
T Consensus        29 ~~~~H~H~~~~e~~~v~~G~~~v~~~d--~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~IeV   92 (98)
T 3lag_A           29 ATGHHTHGMDYVVVPMADGEMTIVAPD--GTRSLAQLKTGRSYARKAGVQHDVRNESTAEIVFLEI   92 (98)
T ss_dssp             ECCSEECCSCEEEEESSCBC-CEECTT--SCEECCCBCTTCCEEECTTCEEEEBCCSSSCEEEEEE
T ss_pred             ccCcEECCCcEEEEEEeccEEEEEeCC--CceEEEEecCCcEEEEcCCCcEECEECCCCeEEEEEE
Confidence            467999985 68888899999988764  3333567899999999999999999988888998876

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=98.54  E-value=8.4e-07  Score=78.42  Aligned_cols=69  Identities=14%  Similarity=0.200  Sum_probs=58.8

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecCC-CcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDES-DQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~-~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      +.....|||+ ..|+.||++|++.+.+-+.+ .+++.-.+++||+++||+|..|...++ +..+.++-||..
T Consensus       368 Ggm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~~H~~~a~-~e~~~~l~f~~s  438 (496)
T 3ksc_A          368 NAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVAAKSL-SDRFSYVAFKTN  438 (496)
T ss_dssp             TCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEC-SSEEEEEEEESS
T ss_pred             CeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEEEECCCCEEEEEeC-CCCEEEEEEECC
Confidence            5678999997 57999999999999998765 457788899999999999999977666 566888888854

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=98.52  E-value=5.4e-07  Score=79.11  Aligned_cols=70  Identities=13%  Similarity=0.228  Sum_probs=59.3

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecCCC-cEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCC
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDESD-QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYG  153 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~-~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~  153 (160)
                      +.....|||+ ..|+.||++|++++.+-+.++ +++.-.+++||+++||+|..|...++ +..+.++-+|...
T Consensus       333 Ggm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~~H~~~ag-~e~~~~l~~f~s~  404 (466)
T 3kgl_A          333 NAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRAT-SEQFRWIEFKTNA  404 (466)
T ss_dssp             TEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEC-SSEEEEEEEESSS
T ss_pred             CcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEEEECCCCeEEEEcC-CCCEEEEEEECCC
Confidence            4668899997 579999999999999997754 57888999999999999999987655 4568888888763

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.51  E-value=2.5e-07  Score=74.48  Aligned_cols=55  Identities=13%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      |..+|+.||++|++.+.++++     .+.+++||.+.+|+|++|++.+..+..++++.+.
T Consensus        79 ~~~ee~~~Vl~G~l~~~~~~~-----~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l~v~  133 (261)
T 1rc6_A           79 EGIETFLYVISGNITAKAEGK-----TFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYK  133 (261)
T ss_dssp             TTEEEEEEEEESEEEEEETTE-----EEEEETTEEEEECTTCCCEEEECSSSCEEEEEEE
T ss_pred             CCceEEEEEEEeEEEEEECCE-----EEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEE
Confidence            346899999999999999988     9999999999999999999998776667666553

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=98.49  E-value=4.2e-07  Score=80.32  Aligned_cols=82  Identities=17%  Similarity=0.246  Sum_probs=62.9

Q ss_pred             cCCceeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCC-CcEE--------------------EE
Q 031374           60 RGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDES-DQWI--------------------RI  118 (160)
Q Consensus        60 ~gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~-~~~~--------------------~~  118 (160)
                      .|... -.++|.|.          .+...|+|...||.||++|+|.+.+-..+ .+.+                    ..
T Consensus        44 ~gvs~-~R~~i~pg----------gl~lPh~~~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~~~~~~~~~~~~d~~qk~~  112 (496)
T 3ksc_A           44 AGVAL-SRATLQRN----------ALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVN  112 (496)
T ss_dssp             HTCEE-EEEEECTT----------EEEEEEEESSCEEEEEEECCEEEEEECTTCCCC---------------CCCCCCEE
T ss_pred             CCceE-EEEEecCC----------CEeCceEcCCCEEEEEEeCceEEEEEeCCCCccchhhhhcccccccccccchheee
Confidence            46543 34566664          35788999889999999999999995432 1211                    23


Q ss_pred             EEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374          119 WIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus       119 ~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      .+++||+|+||+|+.||..++.+..+.++.+|..
T Consensus       113 ~l~~GDV~viPaG~~h~~~N~G~~~lv~v~~~d~  146 (496)
T 3ksc_A          113 RFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDI  146 (496)
T ss_dssp             EECTTEEEEECTTCEEEEEECSSSCEEEEEEECT
T ss_pred             ccCCCCEEEECCCCcEEEEcCCCCCEEEEEEecc
Confidence            8999999999999999999988888999887754

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=98.48  E-value=5.2e-07  Score=78.45  Aligned_cols=67  Identities=18%  Similarity=0.166  Sum_probs=56.0

Q ss_pred             CcccceecC-cceEEEEeeeeEEEEEecCCC-------------cEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDESD-------------QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~-------------~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      .....|+|+ ..|+.||++|++.+.+-+.++             +.+.-.+++||+++||+|..|+..++  ..+.++.|
T Consensus       277 ~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~v~f  354 (434)
T 2ea7_A          277 ALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINAT--SNLNFFAF  354 (434)
T ss_dssp             EEEEEEEESSCEEEEEEEESCEEEEEEEEEECCCCTTSCCCEEEEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEE
T ss_pred             eeeccEEcCCCCEEEEEEeeEEEEEEEecCccccccccccCcceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEE
Confidence            457899998 689999999999999986532             26666899999999999999999888  35888877


Q ss_pred             ecC
Q 031374          150 LSY  152 (160)
Q Consensus       150 f~~  152 (160)
                      |..
T Consensus       355 ~~~  357 (434)
T 2ea7_A          355 GIN  357 (434)
T ss_dssp             EET
T ss_pred             ECC
Confidence            754

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=98.46  E-value=9.5e-07  Score=77.53  Aligned_cols=86  Identities=13%  Similarity=0.203  Sum_probs=67.3

Q ss_pred             eeeeeCCCcccCHHH----------HhcCcccceecC-cceEEEEeeeeEEEEEecCC-CcEEEEEEcCCcEEEeCCCCe
Q 031374           66 DLLDLCPEKVTNYEE----------KLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDES-DQWIRIWIKAGDLIVLPAGIY  133 (160)
Q Consensus        66 dvi~v~~~~~p~~~~----------~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~-~~~~~~~v~~GDli~iP~g~~  133 (160)
                      .+..++...+|....          ..+.....|||+ ..|+.||++|++++.+-+.+ .+.+.-.+++||+++||.|..
T Consensus       306 ~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfvvP~g~~  385 (465)
T 3qac_A          306 RLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFA  385 (465)
T ss_dssp             EEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCE
T ss_pred             eEEEeCHHHCCCccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEEECCCcE
Confidence            445556556665543          124668899998 57999999999999998765 458888999999999999999


Q ss_pred             eeeeeCCCCcEEEEEEecC
Q 031374          134 HRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus       134 H~f~~~~~~~~~~ir~f~~  152 (160)
                      |...++ +..+.++-||+.
T Consensus       386 h~~~ag-~e~~~~l~f~~s  403 (465)
T 3qac_A          386 IVKQAF-EDGFEWVSFKTS  403 (465)
T ss_dssp             EEEEEE-EEEEEEEEEESS
T ss_pred             EEEEcC-CCCeEEEEEecC
Confidence            987765 456888888864

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=98.45  E-value=8.9e-08  Score=71.32  Aligned_cols=74  Identities=11%  Similarity=-0.057  Sum_probs=53.3

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcE
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYV  144 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~  144 (160)
                      ..++.+.|+.          .++.|.|...|.+|||+|+..+..++..+   ...+++||++.+|+|..|......+ .+
T Consensus        46 ~~~~~~~pG~----------~~p~H~H~~~ee~~VL~G~~~~~~g~~~~---~~~~~~Gd~~~~p~g~~H~p~~~~e-~~  111 (145)
T 2o1q_A           46 TAIFDCPAGS----------SFAAHVHVGPGEYFLTKGKMDVRGGKAAG---GDTAIAPGYGYESANARHDKTEFPV-AS  111 (145)
T ss_dssp             EEEEEECTTE----------EECCEEESSCEEEEEEEEEEEETTCGGGT---SEEEESSEEEEECTTCEESCCEEEE-EE
T ss_pred             EEEEEECCCC----------CCCccCCCCCEEEEEEEeEEEEcCCCEec---ceEeCCCEEEEECcCCccCCeECCC-Ce
Confidence            4567777653          46899999888899999999976654410   2789999999999999999432222 24


Q ss_pred             EEEEEecC
Q 031374          145 KVMQILSY  152 (160)
Q Consensus       145 ~~ir~f~~  152 (160)
                      .++.+|.+
T Consensus       112 ~~l~~~~g  119 (145)
T 2o1q_A          112 EFYMSFLG  119 (145)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEECC
Confidence            55555544

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.45  E-value=4.3e-07  Score=73.73  Aligned_cols=54  Identities=11%  Similarity=0.113  Sum_probs=47.5

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      |..+|+.||++|++.+.++++     .+.+++||.+.+|+|++|++.+..+..++++-+
T Consensus        82 ~~~ee~~~Vl~G~l~~~~~~~-----~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~v  135 (274)
T 1sef_A           82 DGIQTLVYVIDGRLRVSDGQE-----THELEAGGYAYFTPEMKMYLANAQEADTEVFLY  135 (274)
T ss_dssp             TTEEEEEEEEESEEEEECSSC-----EEEEETTEEEEECTTSCCEEEESSSSCEEEEEE
T ss_pred             CCceEEEEEEEeEEEEEECCE-----EEEECCCCEEEECCCCCEEEEeCCCCCEEEEEE
Confidence            346899999999999999988     999999999999999999999877666666544

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.40  E-value=8.6e-07  Score=75.75  Aligned_cols=53  Identities=17%  Similarity=0.257  Sum_probs=48.9

Q ss_pred             cCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      +.....|.|...+|++|++|+|++.|+++     ++.+++||+++||++..|++.+++
T Consensus       289 G~~t~~hRht~s~Vy~V~eG~G~~~I~~~-----~~~w~~gD~fvvP~w~~h~~~n~~  341 (368)
T 3nw4_A          289 GTETATRNEVGSTVFQVFEGAGAVVMNGE-----TTKLEKGDMFVVPSWVPWSLQAET  341 (368)
T ss_dssp             TCBCCCEEESSCEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTCCEEEEESS
T ss_pred             CCccCCeeccccEEEEEEeCcEEEEECCE-----EEEecCCCEEEECCCCcEEEEeCC
Confidence            34568999999999999999999999988     999999999999999999998874

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=98.37  E-value=1.5e-06  Score=75.30  Aligned_cols=66  Identities=14%  Similarity=0.249  Sum_probs=54.1

Q ss_pred             CcccceecC-cceEEEEeeeeEEEEEecCCC-------------------------cEEEEEEcCCcEEEeCCCCeeeee
Q 031374           84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDESD-------------------------QWIRIWIKAGDLIVLPAGIYHRFT  137 (160)
Q Consensus        84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~-------------------------~~~~~~v~~GDli~iP~g~~H~f~  137 (160)
                      .....|+|+ ..|+.||++|+|.+.+-+.++                         +.+...+++||+++||+|.+|+..
T Consensus       274 g~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~~~~  353 (418)
T 3s7i_A          274 ALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAIN  353 (418)
T ss_dssp             EEEEEEEESSCEEEEEEEECCEEEEEEEEEEC-------------------CCEEEEEEEEEECTTCEEEECTTCCEEEE
T ss_pred             ceeCceecCCCCEEEEEEeCeEEEEEEeCCCccccccccccccccccccccccccceEEEeeeCCCCEEEECCCCEEEEE
Confidence            457889996 689999999999998875432                         577899999999999999999988


Q ss_pred             eCCCCcEEEEEEec
Q 031374          138 LDTSNYVKVMQILS  151 (160)
Q Consensus       138 ~~~~~~~~~ir~f~  151 (160)
                      +++ + +..+-|+.
T Consensus       354 ~~~-~-l~~v~f~~  365 (418)
T 3s7i_A          354 ASS-E-LHLLGFGI  365 (418)
T ss_dssp             ESS-C-EEEEEEEE
T ss_pred             CCC-C-EEEEEEEc
Confidence            765 3 76666653

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.35  E-value=6.6e-07  Score=73.37  Aligned_cols=66  Identities=12%  Similarity=0.088  Sum_probs=52.9

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEe-cCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVR-DESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~-~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~  143 (160)
                      .-++++.|+.          ....|.|..+|+.||++|++.+.++ ++     .+.+++||.+.+|+|..|++.+.+  .
T Consensus        72 ~~lv~l~PGg----------~s~~~~h~~EEfiyVleG~l~l~l~~g~-----~~~L~~Gds~y~p~~~~H~~~N~~--~  134 (266)
T 4e2q_A           72 MYLAKMKEMS----------SSGLPPQDIERLIFVVEGAVTLTNTSSS-----SKKLTVDSYAYLPPNFHHSLDCVE--S  134 (266)
T ss_dssp             EEEEEECSSE----------ECCCCCTTEEEEEEEEEECEEEEC--CC-----CEEECTTEEEEECTTCCCEEEESS--C
T ss_pred             EEEEEECcCC----------cCCCCCCCCeEEEEEEEEEEEEEECCCc-----EEEEcCCCEEEECCCCCEEEEeCC--C
Confidence            4466777753          1245788899999999999999998 78     899999999999999999999864  3


Q ss_pred             EEEE
Q 031374          144 VKVM  147 (160)
Q Consensus       144 ~~~i  147 (160)
                      .+++
T Consensus       135 Ar~l  138 (266)
T 4e2q_A          135 ATLV  138 (266)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=98.33  E-value=3.2e-06  Score=73.72  Aligned_cols=68  Identities=18%  Similarity=0.230  Sum_probs=56.3

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecCCC---------c--EEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDESD---------Q--WIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~---------~--~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      +.....|+|+ ..|+.||++|++++.+-+.++         +  .+...+++||+++||.|..|...++ + .+.++-|+
T Consensus       291 g~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~-~-~~~~v~f~  368 (445)
T 2cav_A          291 GALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA-S-DLNMVGIG  368 (445)
T ss_dssp             TEEEEEEEESSCEEEEEEEESCEEEEEEEC-----------CCEEEEEEECTTCEEEECTTCCEEEEES-S-SEEEEEEE
T ss_pred             CceeeeEECCCCcEEEEEEeeEEEEEEEeCCCcccccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC-C-CeEEEEEE
Confidence            4568899997 689999999999999987653         3  6899999999999999999998888 3 47777776


Q ss_pred             cC
Q 031374          151 SY  152 (160)
Q Consensus       151 ~~  152 (160)
                      +.
T Consensus       369 ~~  370 (445)
T 2cav_A          369 VN  370 (445)
T ss_dssp             ES
T ss_pred             cc
Confidence            43

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=98.26  E-value=2.7e-06  Score=74.71  Aligned_cols=81  Identities=16%  Similarity=0.266  Sum_probs=62.5

Q ss_pred             CCceeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCc-EE-----------------------
Q 031374           61 GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQ-WI-----------------------  116 (160)
Q Consensus        61 gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~-~~-----------------------  116 (160)
                      ||.. -.+++.|.          .+...|+|+..|++||++|+|++.+-..+.. -+                       
T Consensus        42 gvs~-~r~~i~p~----------Gl~lPh~~~a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~~~~~~~~~~~~~~~~~~  110 (466)
T 3kgl_A           42 GVSF-VRYIIESK----------GLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQ  110 (466)
T ss_dssp             TEEE-EEEEECTT----------EEEEEEEESSCEEEEEEECEEEEEEECTTCCCCEEECCSSCCCC-------------
T ss_pred             CeEE-EEEEECCC----------CEeCCeeCCCCeEEEEEeCeEEEEEecCCCcchhhcccccccccccccccccccccc
Confidence            7653 34566654          4678999999999999999999887643110 00                       


Q ss_pred             -----------------------------------EEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374          117 -----------------------------------RIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus       117 -----------------------------------~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                                                         ...+++||+|.||||+.||..++.+..+.++.++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~d~  181 (466)
T 3kgl_A          111 GQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDL  181 (466)
T ss_dssp             ----------------------------CCEEESCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEEES
T ss_pred             ccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCCCCcEEEEEEEcC
Confidence                                               148899999999999999999988888999888743

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=98.25  E-value=1.8e-06  Score=68.91  Aligned_cols=53  Identities=15%  Similarity=0.221  Sum_probs=45.3

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      ..+..|+|++.|+.||++|+|. .+++...  ..+.+++||++++|||..|.+...
T Consensus        20 ~~~~~~~~~~~~i~~v~~G~~~-~i~~~~~--~~~~l~~g~l~~i~p~~~h~~~~~   72 (276)
T 3gbg_A           20 YIFNNLYINDYKMFWIDSGIAK-LIDKNCL--VSYEINSSSIILLKKNSIQRFSLT   72 (276)
T ss_dssp             EEEEEEECSSCEEEEESSSCEE-EEETTTT--EEEEECTTEEEEECTTCEEEEEEE
T ss_pred             hhccHhhhcceEEEEEecCceE-EECCccc--eeEEEcCCCEEEEcCCCceeeccc
Confidence            4578899999999999999999 9985411  137899999999999999998765

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=98.25  E-value=4.2e-06  Score=69.03  Aligned_cols=57  Identities=25%  Similarity=0.323  Sum_probs=48.0

Q ss_pred             cccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374           85 FYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        85 ~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~  143 (160)
                      -+.+| |+ .+|++|+++|.....+.+. ++--.+.+++||++++|+|++|+-...++..
T Consensus        43 R~d~H-~~~~dE~FyqlkG~m~l~~~d~-g~~~~V~i~eGemfllP~gv~HsP~r~~et~  100 (286)
T 2qnk_A           43 RKDYH-IEEGEEVFYQLEGDMVLRVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQRFANTV  100 (286)
T ss_dssp             CCCEE-ECSSCEEEEEEESCEEEEEEET-TEEEEEEECTTEEEEECTTCCEEEEECTTCE
T ss_pred             CccCc-CCCCCeEEEEEeCeEEEEEEeC-CceeeEEECCCeEEEeCCCCCcCCcccCCeE
Confidence            36789 75 6999999999999999963 5555799999999999999999988765433

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=98.18  E-value=6.6e-06  Score=71.26  Aligned_cols=64  Identities=11%  Similarity=0.201  Sum_probs=50.2

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeee-CCCCcEEEEE
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL-DTSNYVKVMQ  148 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~-~~~~~~~~ir  148 (160)
                      .+...|+....||+||++|+|...+-+. +......+++||+++||+|+.||..+ +++..+.++.
T Consensus        55 gl~~Phh~~A~ei~yV~~G~g~~g~V~~-~~~~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~  119 (418)
T 3s7i_A           55 TLVLPKHADADNILVIQQGQATVTVANG-NNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAK  119 (418)
T ss_dssp             EEEEEEEESEEEEEEEEESEEEEEEECS-SCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEE
T ss_pred             ceeeeeeCCCCeEEEEEEeeEEEEEEec-CCEEEEEecCCCEEEECCCCeEEEEecCCCccEEEEE
Confidence            3466773357899999999999999765 34457899999999999999999887 4445666554

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.13  E-value=4.2e-06  Score=67.00  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=40.3

Q ss_pred             cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      .+|+.||++|++.+.++++     .+.+++||.+.+|+|+.|++.+.
T Consensus        68 ~ee~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~p~~~~H~~~n~  109 (246)
T 1sfn_A           68 YQRFAFVLSGEVDVAVGGE-----TRTLREYDYVYLPAGEKHMLTAK  109 (246)
T ss_dssp             SEEEEEEEEEEEEEECSSC-----EEEECTTEEEEECTTCCCEEEEE
T ss_pred             eeEEEEEEECEEEEEECCE-----EEEECCCCEEEECCCCCEEEEeC
Confidence            7899999999999999988     99999999999999999999886

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=98.10  E-value=4.6e-06  Score=63.27  Aligned_cols=68  Identities=19%  Similarity=0.208  Sum_probs=52.7

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC--CC
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD--TS  141 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~--~~  141 (160)
                      ..-++.+.|+          ..++.|.|...|..|||+|+..|+  +. +    ..+++||++..|+|..|...+.  ..
T Consensus        43 ~v~lvr~~pG----------~~~p~H~H~g~ee~~VL~G~~~~~--e~-~----~~~~~Gd~~~~P~g~~H~~~~~~~~~  105 (159)
T 3ebr_A           43 TITLLKAPAG----------MEMPRHHHTGTVIVYTVQGSWRYK--EH-D----WVAHAGSVVYETASTRHTPQSAYAEG  105 (159)
T ss_dssp             EEEEEEECSS----------CBCCCEEESSCEEEEEEESCEEET--TS-S----CCBCTTCEEEECSSEEECEEESSSSS
T ss_pred             EEEEEEECCC----------CCcccccCCCCEEEEEEEeEEEEe--CC-C----eEECCCeEEEECCCCcceeEeCCCCC
Confidence            4456777765          347899999999999999998874  22 2    4788999999999999999887  44


Q ss_pred             CcEEEEE
Q 031374          142 NYVKVMQ  148 (160)
Q Consensus       142 ~~~~~ir  148 (160)
                      ..+.++.
T Consensus       106 e~~~~~~  112 (159)
T 3ebr_A          106 PDIITFN  112 (159)
T ss_dssp             SCEEEEE
T ss_pred             CCEEEEE
Confidence            5665554

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=98.02  E-value=8e-06  Score=63.16  Aligned_cols=59  Identities=25%  Similarity=0.409  Sum_probs=46.2

Q ss_pred             cCcccceecCc-------ceEEEEeeeeEEEEEecCCC----------------cEEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374           83 KNFYTEHIHAD-------EEIRYCLEGSGYFDVRDESD----------------QWIRIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus        83 ~~~~~~H~H~~-------~Ei~yvl~G~g~f~i~~~~~----------------~~~~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      ++..++|.|..       .|-++|+.|.+++.+.+..-                -+-.+.++|||.+.||+|++|+|.++
T Consensus        63 GQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvtIppg~~H~f~ag  142 (175)
T 2y0o_A           63 GQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYVEGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYTIPPNTKHWFQAG  142 (175)
T ss_dssp             TCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEESSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEEECTTCCEEEEEE
T ss_pred             CCcCCceECCCCCCCCCCceeEEEecCEEEEEECCccccCcceeccCCceeeecCCcEEEECCCCEEEECCCCcEEEEeC
Confidence            35578999975       57777999999999975420                02357999999999999999999984


Q ss_pred             CC
Q 031374          140 TS  141 (160)
Q Consensus       140 ~~  141 (160)
                      +.
T Consensus       143 ee  144 (175)
T 2y0o_A          143 EE  144 (175)
T ss_dssp             EE
T ss_pred             CC
Confidence            43

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=98.01  E-value=1.9e-05  Score=57.26  Aligned_cols=49  Identities=18%  Similarity=0.287  Sum_probs=40.6

Q ss_pred             ceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           88 EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        88 ~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      .+.+..+|+.|||+|++.+...+..    .+.+++||++++|+|..-..+..+
T Consensus        56 ~~~~~~~E~~~iLeG~~~lt~ddG~----~~~l~aGD~~~~P~G~~gtWev~e  104 (116)
T 3es4_A           56 YAGRDLEETFVVVEGEALYSQADAD----PVKIGPGSIVSIAKGVPSRLEILS  104 (116)
T ss_dssp             ECCCSEEEEEEEEECCEEEEETTCC----CEEECTTEEEEECTTCCEEEEECS
T ss_pred             CeeCCCcEEEEEEEeEEEEEeCCCe----EEEECCCCEEEECCCCeEEEEEeE
Confidence            4445567999999999999987532    789999999999999998877655

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=97.89  E-value=1.3e-05  Score=61.11  Aligned_cols=60  Identities=20%  Similarity=0.294  Sum_probs=46.9

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      .-++.+.|+          ..++.|.|...|..|||+|+..+.  +..    ...+++||.+.+|+|..|.....+
T Consensus        45 v~lvr~~pG----------~~~p~H~H~g~ee~~VL~G~f~~~--~~~----~~~~~aGd~~~~P~g~~H~~~a~~  104 (165)
T 3cjx_A           45 VMRASFAPG----------LTLPLHFHTGTVHMYTISGCWYYT--EYP----GQKQTAGCYLYEPGGSIHQFNTPR  104 (165)
T ss_dssp             EEEEEECTT----------CBCCEEEESSCEEEEEEESEEEET--TCT----TSCEETTEEEEECTTCEECEECCT
T ss_pred             EEEEEECCC----------CcCCcccCCCCEEEEEEEEEEEEC--CCc----eEEECCCeEEEeCCCCceeeEeCC
Confidence            456666654          347899999999999999998873  211    256789999999999999988744

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.86  E-value=4.7e-05  Score=61.44  Aligned_cols=53  Identities=13%  Similarity=0.129  Sum_probs=44.1

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEE
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ  148 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir  148 (160)
                      ++.+|+.|||+|+.....+++     .+.+++||+++||+|+.+.+...+.-....++
T Consensus        63 ~p~dE~~~VleG~~~lt~~g~-----~~~~~~Gd~~~ip~G~~~~w~~~~~~~~~y~~  115 (238)
T 3myx_A           63 YPYTEMLVMHRGSVTLTSGTD-----SVTLSTGESAVIGRGTQVRIDAQPESLWAFCA  115 (238)
T ss_dssp             CSSEEEEEEEESEEEEEETTE-----EEEEETTCEEEECTTCCEEEEECTTEEEEEEE
T ss_pred             CCCcEEEEEEEeEEEEECCCe-----EEEEcCCCEEEECCCCEEEEEecCCeEEEEEe
Confidence            445899999999999988766     89999999999999999999887754333333

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.86  E-value=7.7e-05  Score=61.49  Aligned_cols=69  Identities=16%  Similarity=0.242  Sum_probs=54.9

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecCC-CcEEEEEE--cCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDES-DQWIRIWI--KAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~-~~~~~~~v--~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      +.....|+|. ..|.++|++|++.+.+++.. ++|+.+.+  +..+.+.||+|..|.+.+.++..+.+|-+-.
T Consensus       282 g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~~~~~  354 (369)
T 3st7_A          282 GITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWVN  354 (369)
T ss_dssp             TCEEEEEECSSCCEEEEEEESEEEEEEEETTCCCCEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEEEEES
T ss_pred             CceeccccccCcceEEEEEeeeEEEEEEcCCCCcEEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEEEecC
Confidence            3456889997 67999999999999998653 56777776  3449999999999999987766777775543

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=97.84  E-value=3.8e-05  Score=68.28  Aligned_cols=33  Identities=21%  Similarity=0.377  Sum_probs=29.5

Q ss_pred             EEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374          118 IWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus       118 ~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      ..+++||+|.||+|+.||.+++.+..+.++.++
T Consensus       174 ~~vr~GDviaiPaG~~~w~yN~G~~~l~iv~~~  206 (531)
T 3fz3_A          174 RRIREGDVVAIPAGVAYWSYNDGDQELVAVNLF  206 (531)
T ss_dssp             EEEETTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             ecccCCcEEEECCCCeEEEEeCCCceEEEEEEE
Confidence            467999999999999999999988888888765

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=97.64  E-value=0.00011  Score=58.54  Aligned_cols=55  Identities=22%  Similarity=0.215  Sum_probs=44.3

Q ss_pred             eeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374           66 DLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus        66 dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      -++.+.|+          ..++.|.|...|..|||+|+..    +.     .-.+.+||++.+|+|..|...+.
T Consensus        46 ~lvr~~pG----------~~~p~H~H~g~Ee~~VL~G~f~----d~-----~~~~~~Gd~~~~P~g~~H~p~a~  100 (223)
T 3o14_A           46 SIVRYAPG----------SRFSAHTHDGGEEFIVLDGVFQ----DE-----HGDYPAGTYVRNPPTTSHVPGSA  100 (223)
T ss_dssp             EEEEECTT----------EECCCEECTTCEEEEEEEEEEE----ET-----TEEEETTEEEEECTTCEECCEES
T ss_pred             EEEEECCC----------CCcccccCCCCEEEEEEEeEEE----EC-----CeEECCCeEEEeCCCCccccEeC
Confidence            45666664          3578999999999999999964    23     35788999999999999998773

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=97.25  E-value=0.002  Score=47.86  Aligned_cols=58  Identities=19%  Similarity=0.225  Sum_probs=44.5

Q ss_pred             CcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcE-EEeCCCCeeeeeeCCCC
Q 031374           84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDL-IVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDl-i~iP~g~~H~f~~~~~~  142 (160)
                      ....+|.|. ..|++++++|++.+.+.+... --++.+.+.+. |.||||+.|.+..-+..
T Consensus        46 ~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~-~~~~~L~~~~~gL~IppgvWh~~~~~s~~  105 (141)
T 2pa7_A           46 EPRGFHAHKKLEQVLVCLNGSCRVILDDGNI-IQEITLDSPAVGLYVGPAVWHEMHDFSSD  105 (141)
T ss_dssp             CCEEEEEESSCCEEEEEEESCEEEEEECSSC-EEEEEECCTTEEEEECTTCEEEEECCCTT
T ss_pred             CEECcCcCCCceEEEEEEccEEEEEEECCcE-EEEEEECCCCcEEEeCCCEEEEEEEcCCC
Confidence            446789996 689999999999999975332 23556655555 99999999999876554

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=97.21  E-value=0.00033  Score=52.95  Aligned_cols=61  Identities=15%  Similarity=0.125  Sum_probs=46.6

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeee
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT  137 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~  137 (160)
                      ..-++.+.++          ..+..|+|+..|.+|||+|+..+.-++..+   .-.+++|+++..|+|..|...
T Consensus        47 ~t~lvr~~pG----------~~~p~H~H~g~ee~~VL~G~~~~~~Gd~~~---~~~~~aGsYv~ePpGs~H~p~  107 (153)
T 3bal_A           47 WTAIFNCPAG----------SSFASHIHAGPGEYFLTKGKMEVRGGEQEG---GSTAYAPSYGFESSGALHGKT  107 (153)
T ss_dssp             EEEEEEECTT----------EEECCEEESSCEEEEEEESEEEETTCGGGT---SEEEESSEEEEECTTCEESCC
T ss_pred             EEEEEEeCCC----------CCccCccCCCCEEEEEEEEEEEecCccccC---ccccCCCeEEEcCCCCcccce
Confidence            4456666654          458999999999999999999876554312   245589999999999999843

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.16  E-value=0.0011  Score=53.33  Aligned_cols=46  Identities=20%  Similarity=0.338  Sum_probs=38.7

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      |..+|+.|||+|++.+...+..    .+.+++||++++|+|..=..+..+
T Consensus       184 ~~~~E~~~ILeG~v~lt~~~G~----~~~~~aGD~~~~P~G~~~tWev~e  229 (238)
T 3myx_A          184 HKIHELMNLIEGRVVLSLENGS----SLTVNTGDTVFVAQGAPCKWTSTG  229 (238)
T ss_dssp             CSSCEEEEEEECCEEEEETTSC----EEEECTTCEEEECTTCEEEEEESS
T ss_pred             CCCCEEEEEEEeEEEEEeCCCC----EEEECCCCEEEECCCCEEEEEECc
Confidence            4678999999999999886432    799999999999999988777654

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=96.91  E-value=0.0094  Score=45.71  Aligned_cols=67  Identities=10%  Similarity=0.082  Sum_probs=52.1

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecC-C-----CcEEEEEEc---CCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDE-S-----DQWIRIWIK---AGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~-~-----~~~~~~~v~---~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      +.....|.|. ..++.+|++|++...+.|. .     ++|..+.+.   ++-.|.||+|..|.|..-++....++-+
T Consensus        63 GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~ly~  139 (174)
T 3ejk_A           63 RRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVANC  139 (174)
T ss_dssp             TCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEEEE
T ss_pred             CCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEEEE
Confidence            4556889986 7899999999999988543 1     569999998   5678999999999999766534444433

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=96.87  E-value=0.0053  Score=48.03  Aligned_cols=60  Identities=15%  Similarity=0.092  Sum_probs=48.7

Q ss_pred             cCcccceecCcceEEEEee-eeEEEEEecCC-----CcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIHADEEIRYCLE-GSGYFDVRDES-----DQWIRIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~-G~g~f~i~~~~-----~~~~~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      +.....|.|....+..|++ |+..--+-|..     ++|..+.+.++-.|.||+|..|.|..-+++
T Consensus        70 GvlRGlH~h~q~Klv~~~~~G~v~dV~VDlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~  135 (197)
T 1nxm_A           70 NVLRGLHAEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDF  135 (197)
T ss_dssp             TBEEEEEECSSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSE
T ss_pred             CCcceeeecccceEEEEcCCCEEEEEEEECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCC
Confidence            4566889999999999999 99543333233     679999999999999999999999876654

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=96.80  E-value=0.004  Score=51.30  Aligned_cols=49  Identities=16%  Similarity=0.273  Sum_probs=42.9

Q ss_pred             ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           94 EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        94 ~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      +-.+++++|+..+.++++     .+.+++||.|+||||+.|.....++.  +++.+
T Consensus       227 d~wiWqLEGss~Vt~~~q-----~~~L~~~DsLLIpa~~~y~~~r~~gs--v~L~I  275 (286)
T 2qnk_A          227 DVWLWQLEGSSVVTMGGR-----RLSLAPDDSLLVLAGTSYAWERTQGS--VALSV  275 (286)
T ss_dssp             CEEEEEEESCEEEEETTE-----EEEECTTEEEEECTTCCEEEEECTTC--EEEEE
T ss_pred             cEEEEEEcCceEEEECCe-----EEeccCCCEEEecCCCeEEEEecCCe--EEEEE
Confidence            788999999999999988     99999999999999999999887654  44444

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=96.80  E-value=0.0073  Score=46.71  Aligned_cols=60  Identities=17%  Similarity=0.374  Sum_probs=47.0

Q ss_pred             cCcccceec---CcceEEEEeeeeEE---EEEecCC---CcEEEEEEcC--CcEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIH---ADEEIRYCLEGSGY---FDVRDES---DQWIRIWIKA--GDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H---~~~Ei~yvl~G~g~---f~i~~~~---~~~~~~~v~~--GDli~iP~g~~H~f~~~~~~  142 (160)
                      +.....|.|   ...++.+|++|++.   ++++...   ++|..+.+.+  +-.|.||+|..|.|..-+++
T Consensus        58 GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~  128 (185)
T 1ep0_A           58 GVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE  128 (185)
T ss_dssp             TBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE
T ss_pred             CeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC
Confidence            455678888   57899999999975   4444211   5799999976  58899999999999876655

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=96.72  E-value=0.0064  Score=47.88  Aligned_cols=60  Identities=20%  Similarity=0.375  Sum_probs=47.7

Q ss_pred             cCcccceecC----cceEEEEeeeeE---EEEEecCC---CcEEEEEEcC--CcEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIHA----DEEIRYCLEGSG---YFDVRDES---DQWIRIWIKA--GDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H~----~~Ei~yvl~G~g---~f~i~~~~---~~~~~~~v~~--GDli~iP~g~~H~f~~~~~~  142 (160)
                      +.....|.|.    ..++..|++|+.   .++++...   ++|..+.+.+  +-.|.||+|..|.|.+-+++
T Consensus        80 GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~  151 (205)
T 3ryk_A           80 GTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPH  151 (205)
T ss_dssp             TBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSS
T ss_pred             CcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCC
Confidence            4556788884    789999999997   55555332   6799999986  78999999999999876654

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=96.67  E-value=0.01  Score=45.81  Aligned_cols=60  Identities=23%  Similarity=0.362  Sum_probs=46.8

Q ss_pred             cCcccceec---CcceEEEEeeeeEE---EEEecCC---CcEEEEEEcC--CcEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIH---ADEEIRYCLEGSGY---FDVRDES---DQWIRIWIKA--GDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H---~~~Ei~yvl~G~g~---f~i~~~~---~~~~~~~v~~--GDli~iP~g~~H~f~~~~~~  142 (160)
                      +.....|.|   ....+..|++|+..   ++++...   ++|..+.+.+  +..|.||+|..|.|..-+++
T Consensus        59 GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~  129 (184)
T 2ixk_A           59 GVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEY  129 (184)
T ss_dssp             TBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE
T ss_pred             CceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCC
Confidence            455678888   57899999999975   4444211   5799999887  58899999999999877655

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=96.52  E-value=0.015  Score=44.89  Aligned_cols=60  Identities=25%  Similarity=0.477  Sum_probs=46.2

Q ss_pred             cCcccceec----CcceEEEEeeeeEE---EEEecCC---CcEEEEEEcC--CcEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIH----ADEEIRYCLEGSGY---FDVRDES---DQWIRIWIKA--GDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H----~~~Ei~yvl~G~g~---f~i~~~~---~~~~~~~v~~--GDli~iP~g~~H~f~~~~~~  142 (160)
                      +.....|.|    ....+.+|++|+..   ++++...   ++|..+.+.+  +-.|.||+|..|.|..-+++
T Consensus        57 GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~  128 (183)
T 1dzr_A           57 NVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEY  128 (183)
T ss_dssp             TBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE
T ss_pred             CeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC
Confidence            455678888    46899999999975   4444211   5699999887  57899999999999876655

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=96.33  E-value=0.0085  Score=52.43  Aligned_cols=57  Identities=5%  Similarity=0.113  Sum_probs=47.4

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      .+.++++++.+|++.+.-.-.     .+.+++||+++||.|+.++..+.+..+..++-.|..
T Consensus       176 aDGD~Livpq~G~l~i~TEfG-----~L~v~pgei~VIPRGi~frv~l~~p~Rgyi~E~~g~  232 (471)
T 1eyb_A          176 SDGDFLIVPQKGNLLIYTEFG-----KMLVQPNEICVIQRGMRFSIDVFEETRGYILEVYGV  232 (471)
T ss_dssp             SSEEEEEEEEESCEEEEETTE-----EEEECTTEEEEECTTCCEEEECSSSEEEEEEEEESC
T ss_pred             CCCCEEEEEEeCCEEEEEecc-----cEEeccCCEEEECCccEEEEeeCCCceEEEEEccCC
Confidence            357999999999999998866     899999999999999999999866445556655554

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=96.23  E-value=0.03  Score=43.95  Aligned_cols=60  Identities=18%  Similarity=0.341  Sum_probs=46.2

Q ss_pred             cCcccceecC----cceEEEEeeeeEE-EEEecCC-----CcEEEEEEcC--CcEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIHA----DEEIRYCLEGSGY-FDVRDES-----DQWIRIWIKA--GDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H~----~~Ei~yvl~G~g~-f~i~~~~-----~~~~~~~v~~--GDli~iP~g~~H~f~~~~~~  142 (160)
                      +.....|.|.    ...+.+|++|+.. +-++...     ++|..+.+.+  +-.|.||+|..|.|..-+++
T Consensus        57 GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~  128 (205)
T 1oi6_A           57 GVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD  128 (205)
T ss_dssp             TBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTT
T ss_pred             CeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCC
Confidence            4556788885    6899999999975 3332222     5699999987  47899999999999876665

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=96.20  E-value=0.022  Score=46.04  Aligned_cols=65  Identities=11%  Similarity=0.170  Sum_probs=51.1

Q ss_pred             cccceecCcce-EEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCC--Ceeeeee-CCCCcEEEEEEecCC
Q 031374           85 FYTEHIHADEE-IRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTL-DTSNYVKVMQILSYG  153 (160)
Q Consensus        85 ~~~~H~H~~~E-i~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g--~~H~f~~-~~~~~~~~ir~f~~~  153 (160)
                      -+..|-|...| |.|+++|+....-...+    .-.+++||+-...||  +.|+-.+ .+...+..+.++..-
T Consensus        76 gf~~HPHrg~EtvTyvl~G~~~H~DS~Gn----~~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQlWi~l  144 (256)
T 2vec_A           76 AFQPRTYPKVDILNVILDGEAEYRDSEGN----HVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDA  144 (256)
T ss_dssp             EEEEECCSSEEEEEEEEESEEEEEETTSC----EEEEETTEEEEECCCTTCCEEEEECCSSSCEEEEEEEEEC
T ss_pred             ccCCcCCCCcEEEEEEEeeEEEEEeCCCC----EEEECCCeEEEEECCCCeEEEEEECCCCceEEEEEEEEeC
Confidence            36899998655 89999999988766322    788999999999665  7999665 444689999988653

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=96.18  E-value=0.039  Score=42.20  Aligned_cols=60  Identities=13%  Similarity=0.252  Sum_probs=45.9

Q ss_pred             CcccceecCcceEEEEeeeeE-EEEEecCCCcEEEEE----EcCCcE--EEeCCCCeeeeeeCCCCc
Q 031374           84 NFYTEHIHADEEIRYCLEGSG-YFDVRDESDQWIRIW----IKAGDL--IVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g-~f~i~~~~~~~~~~~----v~~GDl--i~iP~g~~H~f~~~~~~~  143 (160)
                      .+..+|....+||.|+..|.+ .+.+-..+++..++.    +.+|+.  ++||+|+.+.....++.+
T Consensus        60 ~~S~~HRv~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~~g~~  126 (170)
T 1yud_A           60 EVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGF  126 (170)
T ss_dssp             CCEEEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTTEESCEEECTTCEEEEEESSSSE
T ss_pred             CCCeeEEcCCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccCceeEEEECCCCEEEEEECCCCc
Confidence            345677778999999999987 777765566655555    567898  999999999988764444

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=96.15  E-value=0.03  Score=44.34  Aligned_cols=60  Identities=18%  Similarity=0.273  Sum_probs=46.7

Q ss_pred             cCcccceecC----cceEEEEeeeeEE---EEEecC---CCcEEEEEEcCC--cEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIHA----DEEIRYCLEGSGY---FDVRDE---SDQWIRIWIKAG--DLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H~----~~Ei~yvl~G~g~---f~i~~~---~~~~~~~~v~~G--Dli~iP~g~~H~f~~~~~~  142 (160)
                      +.....|.|.    ...+.+|++|++.   ++++..   -++|..+.+.+.  ..|.||+|..|.|..-+++
T Consensus        65 GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~  136 (216)
T 2c0z_A           65 GVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE  136 (216)
T ss_dssp             TBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE
T ss_pred             CcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCC
Confidence            4556788885    6899999999975   444422   157999999875  7899999999999876655

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=96.10  E-value=0.03  Score=43.71  Aligned_cols=60  Identities=13%  Similarity=0.195  Sum_probs=46.7

Q ss_pred             cCcccceecC----cceEEEEeeeeEEE-EEecCC-----CcEEEEEEcC--CcEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIHA----DEEIRYCLEGSGYF-DVRDES-----DQWIRIWIKA--GDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H~----~~Ei~yvl~G~g~f-~i~~~~-----~~~~~~~v~~--GDli~iP~g~~H~f~~~~~~  142 (160)
                      +.....|.|.    ...+.+|++|++.. .++...     ++|..+.+.+  +..|.||+|..|.|..-+++
T Consensus        75 GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~  146 (196)
T 1wlt_A           75 GVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDS  146 (196)
T ss_dssp             TBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSE
T ss_pred             CcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC
Confidence            5566789885    58999999999843 333322     4699999986  68899999999999876653

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=95.98  E-value=0.095  Score=38.27  Aligned_cols=70  Identities=14%  Similarity=0.158  Sum_probs=50.1

Q ss_pred             cCcccce----ecC-cceEEEEeeeeEEEEEecCCCc---EEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           83 KNFYTEH----IHA-DEEIRYCLEGSGYFDVRDESDQ---WIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        83 ~~~~~~H----~H~-~~Ei~yvl~G~g~f~i~~~~~~---~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      +.+...|    +|. .-+.+-|++|+..|..-+.++.   --.+...+|+..+|||+..|+...-+++-..-|.||..
T Consensus        24 ~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsdd~~f~leFyc~  101 (127)
T 3bb6_A           24 AGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFVA  101 (127)
T ss_dssp             GGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEEEEEEC
T ss_pred             HHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCCCEEEEEEEEeC
Confidence            5667778    476 4699999999999885333222   23577889999999999999999754433333666653

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=95.97  E-value=0.044  Score=43.62  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=46.1

Q ss_pred             cCcccceecC----cceEEEEeeeeEE-EEEecCC-----CcEEEEEEcCC--cEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIHA----DEEIRYCLEGSGY-FDVRDES-----DQWIRIWIKAG--DLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H~----~~Ei~yvl~G~g~-f~i~~~~-----~~~~~~~v~~G--Dli~iP~g~~H~f~~~~~~  142 (160)
                      +.....|.|.    ...+.+|++|++. +-++...     ++|..+.+.+.  ..|.||+|..|.|..-+++
T Consensus        76 GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~  147 (225)
T 1upi_A           76 GVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN  147 (225)
T ss_dssp             TBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS
T ss_pred             CeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCC
Confidence            4556788885    5899999999975 3332222     46999999874  7899999999999876655

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=95.97  E-value=0.037  Score=44.25  Aligned_cols=66  Identities=23%  Similarity=0.284  Sum_probs=51.3

Q ss_pred             cccceecCcc-eEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCC--Ceeeeee-CCCCcEEEEEEecCCcc
Q 031374           85 FYTEHIHADE-EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTL-DTSNYVKVMQILSYGVQ  155 (160)
Q Consensus        85 ~~~~H~H~~~-Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g--~~H~f~~-~~~~~~~~ir~f~~~p~  155 (160)
                      -+..|-|... .|.|+++|+....-...+    .-.+++||+-...||  +.|+-.+ .+...+..+.++. .|.
T Consensus        53 gf~~HPHrg~EtvTyvl~G~~~H~DS~Gn----~~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQlWv-~P~  122 (242)
T 1tq5_A           53 GFGTHPHKDMEILTYVLEGTVEHQDSMGN----KEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWI-MPE  122 (242)
T ss_dssp             EEEEEEECSCEEEEEEEESEEEEEESSSC----EEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEE-CCS
T ss_pred             cCCCcCCCCcEEEEEEEEeEEEEEeCCCC----cEEECCCcEEEEECCCCcEEEEEcCCCCCeEEEEEEEE-cch
Confidence            3689999864 599999999988766322    788999999999555  9999665 4457899999987 364

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=95.83  E-value=0.046  Score=42.71  Aligned_cols=70  Identities=14%  Similarity=0.090  Sum_probs=52.6

Q ss_pred             cCcccceecCcceEEEEeeeeEEEEEec--CCCcEE----EEEEcCCcEEEeCC--CCeeeeeeC-CCCcEEEEEEecC
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYFDVRD--ESDQWI----RIWIKAGDLIVLPA--GIYHRFTLD-TSNYVKVMQILSY  152 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f~i~~--~~~~~~----~~~v~~GDli~iP~--g~~H~f~~~-~~~~~~~ir~f~~  152 (160)
                      ++..+.|-|....+++|++|+..-.+-.  .++..+    +..+.+|+.+.+++  |..|+..+. .......|-+|..
T Consensus        89 Gq~spiHdH~~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~~~avsLHvY~~  167 (208)
T 2gm6_A           89 GQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDRVSISIHVYGA  167 (208)
T ss_dssp             TCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSSCEEEEEEESS
T ss_pred             CcccCcccCCcceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCCCcEEEEEEEcC
Confidence            4667899998899999999988765521  122222    57899999999999  999999865 4556777777754

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=95.64  E-value=0.083  Score=40.14  Aligned_cols=69  Identities=17%  Similarity=0.243  Sum_probs=50.7

Q ss_pred             CcccceecCc-ceEEEEeeeeEEEEEecC-CCc---EEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           84 NFYTEHIHAD-EEIRYCLEGSGYFDVRDE-SDQ---WIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        84 ~~~~~H~H~~-~Ei~yvl~G~g~f~i~~~-~~~---~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      +....|-|.. ..+++|++|+....+-.. ++.   .-+..+.+||.++.|++-.|++.+........|-+|..
T Consensus        80 q~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~~~aVSlHvY~p  153 (171)
T 3eqe_A           80 KETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTSERMVSLHVYSP  153 (171)
T ss_dssp             CBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSSSCEEEEEEEES
T ss_pred             CCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCCCCEEEEEEeCC
Confidence            4567899985 788889999998764211 111   12577899999999999999998766666666666553

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=95.44  E-value=0.048  Score=43.90  Aligned_cols=59  Identities=22%  Similarity=0.283  Sum_probs=42.9

Q ss_pred             cCcccceecC-cceEEEEeee---eEEEEEecCC-------------CcE------EEEEEcCCcEEEeCCCCeeeeeeC
Q 031374           83 KNFYTEHIHA-DEEIRYCLEG---SGYFDVRDES-------------DQW------IRIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G---~g~f~i~~~~-------------~~~------~~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      ++..+.|.|. -.|-+.+.-|   ..++...+.+             +..      =.+.++||+-|.||||++|+|.+.
T Consensus       116 gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl~Pg~~H~F~ae  195 (246)
T 3kmh_A          116 AQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESICLPPGLYHSFWAE  195 (246)
T ss_dssp             TCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEEECTTEEEEEEEC
T ss_pred             CCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEecCCCCEEEEEec
Confidence            3567899997 4788888777   4444444322             111      146889999999999999999998


Q ss_pred             CC
Q 031374          140 TS  141 (160)
Q Consensus       140 ~~  141 (160)
                      ++
T Consensus       196 ~g  197 (246)
T 3kmh_A          196 AG  197 (246)
T ss_dssp             TT
T ss_pred             CC
Confidence            76

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=95.39  E-value=0.095  Score=41.04  Aligned_cols=60  Identities=22%  Similarity=0.310  Sum_probs=46.0

Q ss_pred             cCcccceecC----cceEEEEeeeeEEEEEec---CC---CcEEEEEEcC--CcEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIHA----DEEIRYCLEGSGYFDVRD---ES---DQWIRIWIKA--GDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H~----~~Ei~yvl~G~g~f~i~~---~~---~~~~~~~v~~--GDli~iP~g~~H~f~~~~~~  142 (160)
                      +.....|.|.    ...+.+|+.|+..--+-|   ..   ++|..+.+.+  +-.|.||+|..|.|..-+++
T Consensus        54 GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~  125 (201)
T 4hn1_A           54 GALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDD  125 (201)
T ss_dssp             TBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTT
T ss_pred             CceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCC
Confidence            4566788874    789999999997433322   11   6799988886  78899999999999876654

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=95.09  E-value=0.062  Score=40.96  Aligned_cols=53  Identities=11%  Similarity=0.299  Sum_probs=40.0

Q ss_pred             ceecCcceEEEEeeeeEEEEEecCC----------------------------------CcEEEEEEcCCcEEEeCCCCe
Q 031374           88 EHIHADEEIRYCLEGSGYFDVRDES----------------------------------DQWIRIWIKAGDLIVLPAGIY  133 (160)
Q Consensus        88 ~H~H~~~Ei~yvl~G~g~f~i~~~~----------------------------------~~~~~~~v~~GDli~iP~g~~  133 (160)
                      .|.-..+=+...+.|+=.+.+-...                                  -+.+++.++|||+|+||+|-.
T Consensus       139 ~H~D~~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~LyiP~gW~  218 (235)
T 4gjz_A          139 LHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYW  218 (235)
T ss_dssp             EECCSSEEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEECTTCEEEECTTCE
T ss_pred             eeeccccceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEECCCCEEEeCCCCc
Confidence            3444456677788999999884211                                  135789999999999999999


Q ss_pred             eeeeeCC
Q 031374          134 HRFTLDT  140 (160)
Q Consensus       134 H~f~~~~  140 (160)
                      |...+.+
T Consensus       219 H~V~~l~  225 (235)
T 4gjz_A          219 HYVRALD  225 (235)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            9988654

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=94.85  E-value=0.032  Score=44.12  Aligned_cols=49  Identities=16%  Similarity=0.112  Sum_probs=38.8

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      ..+..|.|..+|+ +||+|+..    +.     .-.+.+|+.|-+|+|..|...++++.
T Consensus       157 ~~~~~~~hgG~Ei-lVL~G~~~----d~-----~~~~~~GsWlR~P~gs~h~~~ag~~g  205 (223)
T 3o14_A          157 ANLTSEAAGGIEV-LVLDGDVT----VN-----DEVLGRNAWLRLPEGEALSATAGARG  205 (223)
T ss_dssp             CEEEECCSSCEEE-EEEEEEEE----ET-----TEEECTTEEEEECTTCCEEEEEEEEE
T ss_pred             CccCCCCCCcEEE-EEEEeEEE----EC-----CceECCCeEEEeCCCCccCcEECCCC
Confidence            4578899977887 99999953    23     35788999999999999998885443

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=94.76  E-value=0.16  Score=42.29  Aligned_cols=71  Identities=14%  Similarity=0.281  Sum_probs=49.8

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEe-cCC---------------------------------CcEEEEEEcCCcEEEeC
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVR-DES---------------------------------DQWIRIWIKAGDLIVLP  129 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~-~~~---------------------------------~~~~~~~v~~GDli~iP  129 (160)
                      .-...|.-..+=+...+.|+=.+.+- ..+                                 ...+.+.++|||+|.||
T Consensus       152 ~~~~~H~D~~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~pGD~LyiP  231 (342)
T 1vrb_A          152 GGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLP  231 (342)
T ss_dssp             CCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCEEEEC
T ss_pred             CCCCCeECChhcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEECCCcEEEeC
Confidence            34567887677777788999888887 211                                 12478999999999999


Q ss_pred             CCCeeeeeeCCCCcEEEEEEecCCccc
Q 031374          130 AGIYHRFTLDTSNYVKVMQILSYGVQR  156 (160)
Q Consensus       130 ~g~~H~f~~~~~~~~~~ir~f~~~p~w  156 (160)
                      +|..|...+.++.....+.+-  .|.|
T Consensus       232 ~gwwH~v~s~~~~~slsvsi~--~~~~  256 (342)
T 1vrb_A          232 RGLWHSTKSDQATLALNITFG--QPAW  256 (342)
T ss_dssp             TTCEEEEECSSCEEEEEEEEC--CCBH
T ss_pred             CCccEEEEECCCCceEEEEEC--CCcH
Confidence            999999987642233333333  5555

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=94.76  E-value=0.066  Score=43.77  Aligned_cols=54  Identities=20%  Similarity=0.309  Sum_probs=38.4

Q ss_pred             cccceecCcc---------eEEEE-ee---eeEEEEEe---cCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           85 FYTEHIHADE---------EIRYC-LE---GSGYFDVR---DESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        85 ~~~~H~H~~~---------Ei~yv-l~---G~g~f~i~---~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      -++.|.|+.+         |++|+ +.   |-|.-.+-   +..|.  .+.|+.||+++||+|- |...+-..
T Consensus       167 SyPpHkHd~~~~~~e~~lEE~YYf~~~~~~gf~~q~vyt~d~~~de--~~~V~~~d~VlvP~Gy-Hp~~a~pG  236 (270)
T 2qjv_A          167 SWPAHXHDTAVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSLDE--CMAVYNRDVVXVPXGY-HPVATIAG  236 (270)
T ss_dssp             SCSCEECEEEETTTEEECEEEEEEEEESTTCEEEEEEECTTSSSEE--EEEEETTCEEEESSSB-CCEEECTT
T ss_pred             cCCCcccccccCcccccceeEEEEECCCCCCEEEEEEeCCCCCCce--EEEEECCCEEecCCCc-CCCcCCCC
Confidence            3689999864         99987 43   56666661   11122  6999999999999999 98554433

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=94.33  E-value=0.66  Score=40.80  Aligned_cols=64  Identities=19%  Similarity=0.314  Sum_probs=47.8

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCC--------------------cEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEE
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESD--------------------QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVK  145 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~--------------------~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~  145 (160)
                      +..|+=..+=+..-+.|+=.+.+....+                    ..+.+.+++||++.||+|..|...+.+...-.
T Consensus       178 ~~pH~D~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~Sl  257 (489)
T 4diq_A          178 FAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSL  257 (489)
T ss_dssp             SCCBCCSSEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCEEEEEBCSSCCEE
T ss_pred             ccCccCCcceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCceEEEecCCCceE
Confidence            4567666777778889999999965321                    24689999999999999999999887544444


Q ss_pred             EEEE
Q 031374          146 VMQI  149 (160)
Q Consensus       146 ~ir~  149 (160)
                      .+.+
T Consensus       258 hlTi  261 (489)
T 4diq_A          258 HLTL  261 (489)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            4444

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=94.32  E-value=0.15  Score=41.52  Aligned_cols=66  Identities=18%  Similarity=0.215  Sum_probs=51.6

Q ss_pred             cccceecCcce-EEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCC--CeeeeeeCCCCcEEEEEEecCCc
Q 031374           85 FYTEHIHADEE-IRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTLDTSNYVKVMQILSYGV  154 (160)
Q Consensus        85 ~~~~H~H~~~E-i~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g--~~H~f~~~~~~~~~~ir~f~~~p  154 (160)
                      -+..|-|...| |.|+++|+....-.-.+    .-.+++||+-..-||  +.|+-.+.+...+..+.++..-|
T Consensus        51 gf~~HPHrg~EtVTyvl~G~~~H~DS~Gn----~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQlWvnLP  119 (277)
T 2p17_A           51 TFDVHPHRGIETVTYVISGELEHFDSKAG----HSTLGPGDVQWMTAGRGVVHKEDPASGSTVHSLQLWVNLP  119 (277)
T ss_dssp             CCCCEEECSEEEEEEEEESCEEEEETTTE----EEEECTTCEEEEECTTCEEEEEEECTTCCEEEEEEEEECC
T ss_pred             CCCCCCCCCcEEEEEEEEeEEEEeeCCCC----ceEECCCeEEEEeCCCCEEEEeecCCCCCEEEEEEEeeCC
Confidence            47899998655 99999999887754222    678999999888775  78987766667899999987544

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=94.08  E-value=0.06  Score=44.61  Aligned_cols=22  Identities=41%  Similarity=0.690  Sum_probs=20.0

Q ss_pred             EEEEcCCcEEEeCCCCeeeeee
Q 031374          117 RIWIKAGDLIVLPAGIYHRFTL  138 (160)
Q Consensus       117 ~~~v~~GDli~iP~g~~H~f~~  138 (160)
                      .+.++|||.++||||+.|....
T Consensus       159 ~v~l~pGd~~~ipaGt~HA~~~  180 (319)
T 1qwr_A          159 RIKIKPGDFYYVPSGTLHALCK  180 (319)
T ss_dssp             EEECCTTCEEEECTTCCEEECS
T ss_pred             EEEcCCCCEEEcCCCCceEecC
Confidence            7999999999999999998653

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=94.07  E-value=0.27  Score=42.51  Aligned_cols=55  Identities=22%  Similarity=0.318  Sum_probs=43.6

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCC----------------CcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDES----------------DQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~----------------~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      +..|+-..+=+...+.|+=.+.+-...                ...+.+.++|||++.||+|..|.....+
T Consensus       153 ~~~H~D~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~  223 (442)
T 2xdv_A          153 LPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPA  223 (442)
T ss_dssp             SCSEECSSEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred             ccceECCcceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEEEecC
Confidence            367886677788888999999885432                1246799999999999999999988654

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=93.98  E-value=0.33  Score=40.41  Aligned_cols=66  Identities=9%  Similarity=0.052  Sum_probs=48.0

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCC-----------------------------------CcEEEEEEcCCcEEEeCC
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDES-----------------------------------DQWIRIWIKAGDLIVLPA  130 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~-----------------------------------~~~~~~~v~~GDli~iP~  130 (160)
                      ...|....+=+...+.|+=.+.+-...                                   ...+.+.++|||+|+||+
T Consensus       196 t~~H~D~~~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~LyiP~  275 (349)
T 3d8c_A          196 TPAHYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPM  275 (349)
T ss_dssp             EEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEECTTCEEEECT
T ss_pred             ccceECChhcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEECCCCEEEECC
Confidence            355665566777788998888763210                                   157899999999999999


Q ss_pred             CCeeeeeeCC-CCcEEEEEEec
Q 031374          131 GIYHRFTLDT-SNYVKVMQILS  151 (160)
Q Consensus       131 g~~H~f~~~~-~~~~~~ir~f~  151 (160)
                      |-.|.....+ .....++.++.
T Consensus       276 gWwH~V~~l~d~~~sisvn~w~  297 (349)
T 3d8c_A          276 YWWHHIESLLNGGITITVNFWY  297 (349)
T ss_dssp             TCEEEEEECTTSCCEEEEEEEE
T ss_pred             CCcEEEEEcCCCCcEEEEEEEc
Confidence            9999998765 34455666643

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=92.92  E-value=0.077  Score=35.37  Aligned_cols=28  Identities=14%  Similarity=0.210  Sum_probs=24.0

Q ss_pred             CcccceecC-cceEEEEeeeeEEEEEecC
Q 031374           84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDE  111 (160)
Q Consensus        84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~  111 (160)
                      ..+..|+|. ..||.||++|++++.+-+.
T Consensus        47 g~~~PH~hprA~ei~~V~~G~~~v~~V~~   75 (79)
T 1dgw_X           47 ALFVPHYNSRATVILVANEGRAEVELVGL   75 (79)
T ss_dssp             CEEEEEEESSCEEEEEEEESCEEEEEEEE
T ss_pred             cCcCCccCCCCcEEEEEEeceEEEEEecC
Confidence            457899998 6799999999999988654

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=92.73  E-value=0.25  Score=40.88  Aligned_cols=66  Identities=12%  Similarity=0.142  Sum_probs=46.1

Q ss_pred             cceecCcceEEEEeeeeEEEEEecCC------------------------------CcEEEEEEcCCcEEEeCCCCeeee
Q 031374           87 TEHIHADEEIRYCLEGSGYFDVRDES------------------------------DQWIRIWIKAGDLIVLPAGIYHRF  136 (160)
Q Consensus        87 ~~H~H~~~Ei~yvl~G~g~f~i~~~~------------------------------~~~~~~~v~~GDli~iP~g~~H~f  136 (160)
                      ..|.-..+=+...+.|+=.+.+-...                              ...+.+.++|||+|+||+|-.|..
T Consensus       181 ~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pGD~LyiP~gWwH~v  260 (338)
T 3al5_A          181 WTHYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPALWFHNV  260 (338)
T ss_dssp             EEECCSSEEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTTCEEEECTTCEEEE
T ss_pred             cceECCcccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCCCEEEECCCCeEEE
Confidence            34555555666678898888764210                              127899999999999999999999


Q ss_pred             eeCCCCcEEEEE-EecCCc
Q 031374          137 TLDTSNYVKVMQ-ILSYGV  154 (160)
Q Consensus       137 ~~~~~~~~~~ir-~f~~~p  154 (160)
                      .+.+  ...++. .|..-|
T Consensus       261 ~~l~--~sisvn~~~~~~~  277 (338)
T 3al5_A          261 ISEE--FGVGVNIFWKHLP  277 (338)
T ss_dssp             EESS--CEEEEEEEECSSC
T ss_pred             eeCC--CEEEEEEEecCCc
Confidence            8764  345555 455543

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=92.32  E-value=0.39  Score=39.30  Aligned_cols=64  Identities=23%  Similarity=0.208  Sum_probs=50.5

Q ss_pred             ccceecCcce-EEEEe-eeeEEEEEecCCCcEEEEEEcCCcEEEeCCC--CeeeeeeCCCCcEEEEEEecCC
Q 031374           86 YTEHIHADEE-IRYCL-EGSGYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTLDTSNYVKVMQILSYG  153 (160)
Q Consensus        86 ~~~H~H~~~E-i~yvl-~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g--~~H~f~~~~~~~~~~ir~f~~~  153 (160)
                      +..|-|...| |.|++ +|+....-.-.+    .-.+++||+-..-||  +.|+-.+.+...+..+.++..-
T Consensus        53 f~~HPHrg~EtVTyvl~~G~~~H~DS~Gn----~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQlWvnL  120 (290)
T 1j1l_A           53 FPDHPHRGFETVSYLLEGGSMAHEDFCGH----TGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNL  120 (290)
T ss_dssp             EEEEEEBSEEEEEEECSSSCEEEEETTSC----EEEECTTCEEEEECTTCEEEEEEECSSSCEEEEEEEEEC
T ss_pred             CCCCCCCCeEEEEEECcceEEEEeeCCCC----ceEECCCcEEEEeCCCCEEEEeEcCCCCCEEEEEEEecC
Confidence            6899998755 89999 999988765333    688999999877766  7898766566789999998743

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=92.09  E-value=0.49  Score=39.05  Aligned_cols=37  Identities=32%  Similarity=0.437  Sum_probs=31.5

Q ss_pred             CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCe
Q 031374           92 ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIY  133 (160)
Q Consensus        92 ~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~  133 (160)
                      ....+..|++|+|.+..++.     .+.+++||.++||++..
T Consensus       268 ~~~~il~v~~G~~~l~~~~~-----~~~l~~G~~~~vpa~~~  304 (319)
T 1qwr_A          268 ESFLICSVIEGSGLLKYEDK-----TCPLKKGDHFILPAQMP  304 (319)
T ss_dssp             SSCEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCC
T ss_pred             CccEEEEEEcCeEEEEECCE-----EEEEcCCcEEEEeCCCc
Confidence            45789999999999877544     78999999999999873

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=91.72  E-value=0.58  Score=32.34  Aligned_cols=46  Identities=11%  Similarity=0.179  Sum_probs=37.5

Q ss_pred             cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      ..|+.=|++|++.+.+.+.+ .|  ....+||-+.||+|..-.......
T Consensus        41 ~~E~M~vvsG~~~V~lpg~~-ew--~~~~aGesF~Vpans~F~l~v~~~   86 (94)
T 2oyz_A           41 APERMTVVKGALVVKRVGEA-DW--TTYSSGESFDVEGNSSFELQVKDA   86 (94)
T ss_dssp             SCEEEEEEESEEEEEETTCS-SC--EEEETTCEEEECSSEEEEEEESSC
T ss_pred             CeEEEEEEEeEEEEEcCCCC-cC--EEECCCCEEEECCCCEEEEEEccc
Confidence            57999999999999999653 34  667799999999998777666543

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=91.62  E-value=0.78  Score=32.99  Aligned_cols=58  Identities=21%  Similarity=0.253  Sum_probs=41.3

Q ss_pred             ceEEEEeeeeEEEEEecCCCc---EEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           94 EEIRYCLEGSGYFDVRDESDQ---WIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        94 ~Ei~yvl~G~g~f~i~~~~~~---~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      -..+-|++|+..|..-..++.   --.+.+.+|+.-+|||...|+..++++-.|. |.||..
T Consensus        39 WgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~sdD~~f~-leFyc~   99 (119)
T 3dl3_A           39 FGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQFN-INFWSD   99 (119)
T ss_dssp             EEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEEE-EEEEEC
T ss_pred             EEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEECCCeEEE-EEEEEC
Confidence            467889999999997332221   2357888999999999999999966554433 445443

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=91.38  E-value=0.53  Score=38.55  Aligned_cols=51  Identities=20%  Similarity=0.195  Sum_probs=37.9

Q ss_pred             Ccc-eEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCee-eeeeCCCCcEEEEEEec
Q 031374           92 ADE-EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYH-RFTLDTSNYVKVMQILS  151 (160)
Q Consensus        92 ~~~-Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H-~f~~~~~~~~~~ir~f~  151 (160)
                      ... .+..|++| |.+..++.     .+.+++||.++|||+..- .+..  + .++++|.|.
T Consensus       246 ~~~~~il~v~~G-~~i~~~~~-----~~~l~~G~~~~ipa~~~~~~i~g--~-~~~~~~a~~  298 (300)
T 1zx5_A          246 GGVMNILYAAEG-YFILRGKE-----TADLHRGYSCLVPASTDSFTVES--E-RGKIVRIYL  298 (300)
T ss_dssp             CSBCEEEEEEES-CEEEESSS-----EEEECTTCEEEECTTCCEEEEEE--E-EEEEEEEEE
T ss_pred             CCceEEEEEccc-EEEEeCCe-----EEEEccceEEEEeCCCceEEEEe--C-ceEEEEEEE
Confidence            456 89999999 99887655     789999999999999843 2322  1 466666653

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=90.92  E-value=0.6  Score=39.75  Aligned_cols=54  Identities=15%  Similarity=0.305  Sum_probs=38.8

Q ss_pred             ecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           90 IHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        90 ~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      .+....|..|++|++.+...+.     .+.+++||.++||++..- ++...  ..+++|.|.
T Consensus       339 ~~~~~~il~v~~G~~~l~~~~~-----~~~l~~G~~~fvpa~~~~-~~i~g--~~~~~~~~~  392 (394)
T 2wfp_A          339 GQHSAAILFCVEGEAVLRKDEQ-----RLVLKPGESAFIGADESP-VNASG--TGRLARVYN  392 (394)
T ss_dssp             CCSSCEEEEEEEEEEEEEETTE-----EEEECTTCEEEECGGGCC-EEEEE--EEEEEEEEC
T ss_pred             cCCCcEEEEEEeceEEEEECCe-----EEEEccCcEEEEeCCCce-EEEEe--eeEEEEEEe
Confidence            3445689999999999877654     689999999999998532 22221  356666654

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=90.90  E-value=0.12  Score=42.40  Aligned_cols=47  Identities=17%  Similarity=0.174  Sum_probs=33.2

Q ss_pred             cceEEEEee-eeEEEEEecC-----------CCc------EEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374           93 DEEIRYCLE-GSGYFDVRDE-----------SDQ------WIRIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus        93 ~~Ei~yvl~-G~g~f~i~~~-----------~~~------~~~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      -.|+.|+|+ .++.+.++..           ++.      --.+.++|||.++||||+.|.+..+
T Consensus       117 KpE~~y~L~~~~~~~Gf~~~~~~~~~~~~l~~~~~~~~~lLn~v~l~pGd~~~ipaGt~HA~~~G  181 (300)
T 1zx5_A          117 VESAWLVFNKGKAYAGFKEDVKIEELEEKLKEEDFDFKTLLNTFETTPYDTFVIRPGIPHAGEGL  181 (300)
T ss_dssp             CCEEEEECSSCEEEEEESSCCCHHHHHHHHTSSSCCGGGGEEEEECCTTCEEEECTTCCEEEESE
T ss_pred             CcEEEEEcccHHHhhCCCCCCCHHHHHHHHHhCchhHHHHhceeECCCCCEEEcCCCCceEcCCC
Confidence            368888887 4455554421           122      4478999999999999999987543

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=90.38  E-value=3.2  Score=31.92  Aligned_cols=70  Identities=11%  Similarity=-0.028  Sum_probs=50.1

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecCC-C------cEEEEEEcCCcEEEe-CCCCeeeeeeCC-CCcEEEEEEecC
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDES-D------QWIRIWIKAGDLIVL-PAGIYHRFTLDT-SNYVKVMQILSY  152 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~-~------~~~~~~v~~GDli~i-P~g~~H~f~~~~-~~~~~~ir~f~~  152 (160)
                      ++..+.|-|. .-.+++|++|+..-..-+.. +      ..=...+.+||+..+ |++-.|+..+.. ......|-+|..
T Consensus        80 Gq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~~~~avSlHvY~p  159 (200)
T 3eln_A           80 GHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHTEPAVSLHLYSP  159 (200)
T ss_dssp             TCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSSCCEEEEEEEES
T ss_pred             CCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCCCCCEEEEEeCCC
Confidence            4567899998 57999999999887653211 1      122578999999999 888899998654 445555555543

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A

Probab=89.28  E-value=0.71  Score=35.88  Aligned_cols=57  Identities=18%  Similarity=0.313  Sum_probs=39.6

Q ss_pred             hcCcccceecCcc---eEEEEee--eeEEEEEecCC------------------CcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374           82 LKNFYTEHIHADE---EIRYCLE--GSGYFDVRDES------------------DQWIRIWIKAGDLIVLPAGIYHRFTL  138 (160)
Q Consensus        82 ~~~~~~~H~H~~~---Ei~yvl~--G~g~f~i~~~~------------------~~~~~~~v~~GDli~iP~g~~H~f~~  138 (160)
                      .+.+...|.|..-   =++|+--  +.|.+.+.+..                  ..++.+..++||+|+.|+...|....
T Consensus       112 ~G~~~~~H~H~~~~lSgV~Yl~~p~~~G~L~f~~p~~~~~~~~~~~~~~~~~~~~~~~~i~P~~G~lvlFpS~l~H~V~p  191 (216)
T 2rg4_A          112 EGGVHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRKGAREELRTFRSVAPKVGDVLLWESWLRHEVPM  191 (216)
T ss_dssp             TTCCEEEECCTTCSEEEEEEEECCSCSCCEEEECTTGGGCSSSCCCCCCSCGGGCSEEEECCCTTEEEEEETTSCEEECC
T ss_pred             CCCcccCccCCCCeEEEEEEEECCCCCccEEEeCCccccccccCcccccCcccCCCeeEecCCCCeEEEECCCCEEeccC
Confidence            3678899999743   3455532  33444444321                  34557889999999999999999876

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=88.64  E-value=0.3  Score=41.58  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=20.7

Q ss_pred             EEEEcCCcEEEeCCCCeeeeeeC
Q 031374          117 RIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus       117 ~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      .+.++|||.++||||+.|.+..+
T Consensus       241 ~v~l~pGd~~fipAG~~HAy~~G  263 (394)
T 2wfp_A          241 VVKLNPGEAMFLFAETPHAYLQG  263 (394)
T ss_dssp             EEEECTTCEEEECTTCCEEEEEE
T ss_pred             EEECCCCCEEEcCCCCceEcCCC
Confidence            79999999999999999987654

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=88.51  E-value=0.78  Score=38.20  Aligned_cols=27  Identities=22%  Similarity=0.377  Sum_probs=24.1

Q ss_pred             EEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374          115 WIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus       115 ~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      .+++.+++||+|+||+|-.|...+.+.
T Consensus       255 ~~~~~l~pGd~l~iP~gw~H~v~~~~~  281 (336)
T 3k2o_A          255 PLEILQKPGETVFVPGGWWHVVLNLDT  281 (336)
T ss_dssp             CEEEEECTTCEEEECTTCEEEEEESSC
T ss_pred             eEEEEECCCCEEEeCCCCcEEEecCCC
Confidence            478999999999999999999887664

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=87.88  E-value=1.5  Score=37.90  Aligned_cols=58  Identities=14%  Similarity=0.220  Sum_probs=39.5

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEE-EEEcCCcEEEeCCCCeeeeeeCC---CCcEEEEEEec
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIR-IWIKAGDLIVLPAGIYHRFTLDT---SNYVKVMQILS  151 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~-~~v~~GDli~iP~g~~H~f~~~~---~~~~~~ir~f~  151 (160)
                      .....|..|++|+|.+...+.. .  . +.+++||.++||++..=.+....   ...+.+.|-|.
T Consensus       377 ~~~~~illv~~G~g~i~~~~~~-~--~~~~l~~G~~~fvpa~~~~~i~g~~~~~~~~~~~~~a~~  438 (440)
T 1pmi_A          377 LNGPSIVIATNGKGTIQITGDD-S--TKQKIDTGYVFFVAPGSSIELTADSANQDQDFTTYRAFV  438 (440)
T ss_dssp             CSSCEEEEEEESEEEEEETTCG-G--GCEEEETTCEEEECTTCCEEEEECSSCCSSCCEEEEEEC
T ss_pred             CCCcEEEEEEeCeEEEEeCCcc-c--ceEEeccCCEEEEeCCCcEEEEEecccCCCcEEEEEEEe
Confidence            3467899999999998875320 0  2 68999999999999433344431   34466666554

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=87.67  E-value=1.6  Score=29.94  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=27.8

Q ss_pred             EEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374          116 IRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus       116 ~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ++-.|++||+++||+|-+=...++.  .+..+.|-+.
T Consensus         6 ~~~~l~~G~v~vVPq~~~v~~~A~~--~le~v~F~tn   40 (93)
T 1dgw_Y            6 YAATLSEGDIIVIPSSFPVALKAAS--DLNMVGIGVN   40 (93)
T ss_dssp             EEEEECTTCEEEECTTCCEEEEESS--SEEEEEEEES
T ss_pred             hhceecCCcEEEECCCCceeEEecC--CeEEEEEEec
Confidence            4678999999999999888887775  3777777544

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=87.30  E-value=2  Score=30.43  Aligned_cols=51  Identities=14%  Similarity=0.181  Sum_probs=39.9

Q ss_pred             ceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           88 EHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        88 ~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      .+..+ ..|+.=|++|++.+.+.+.+ .|  ....+|+-..||++..-.......
T Consensus        51 YtF~T~~~E~MevvsG~l~V~Lpg~~-eW--~~~~aGesF~VpanssF~lkv~~~  102 (111)
T 3hqx_A           51 LTFETHVPERMEIISGECRVKIADST-ES--ELFRAGQSFYVPGNSLFKIETDEV  102 (111)
T ss_dssp             EEEECSSCEEEEEEESEEEEEETTCS-SC--EEEETTCEEEECTTCEEEEECSSC
T ss_pred             eEEcCCCcEEEEEEEeEEEEEcCCcc-cC--EEeCCCCEEEECCCCcEEEEECcc
Confidence            34444 57999999999999999754 44  567799999999999877776543

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=87.11  E-value=1  Score=31.71  Aligned_cols=49  Identities=22%  Similarity=0.321  Sum_probs=38.2

Q ss_pred             ceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374           88 EHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus        88 ~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      .+..+ ..|+.-|++|++.+.+.+.+ .|  ....+|+-+.||++..-.....
T Consensus        48 Y~F~T~~~E~MevvsG~l~V~LpG~~-eW--~~~~aGesF~VpanssF~lkv~   97 (106)
T 3eo6_A           48 YTLSSEVAETIRVLSGMAYYHAEGAN-DV--QELHAGDSMVIPANQSYRLEVM   97 (106)
T ss_dssp             EEECCSSCEEEEEEEEEEEEECTTCS-SC--EEEETTCEEEECSSSCEEEEEE
T ss_pred             EEecCCCcEEEEEEEeEEEEECCCCc-cC--EEECCCCEEEECCCCcEEEEEC
Confidence            44454 57999999999999999753 44  5677999999999987666543

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=86.43  E-value=1.2  Score=36.51  Aligned_cols=52  Identities=15%  Similarity=0.177  Sum_probs=38.9

Q ss_pred             eecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeee-------eeeCCCCcEEEEEEecCCccc
Q 031374           89 HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHR-------FTLDTSNYVKVMQILSYGVQR  156 (160)
Q Consensus        89 H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~-------f~~~~~~~~~~ir~f~~~p~w  156 (160)
                      -.|+..|=.||++|.+                .+|+..+-|+|+.|.       --.+++..+.++|.=.+--+|
T Consensus       234 ~iHdy~EEvY~LeG~~----------------d~G~Y~~RPpg~~HGps~~~~ppf~Se~G~l~fvR~DgdLs~~  292 (303)
T 2qdr_A          234 MIQPYNEEGYCLTGYC----------------DVGDYRIVKDHYWYCPSFSTLPRHITDDGGLFFVRVDRDLSKV  292 (303)
T ss_dssp             EEECSCEEEEEEEEEE----------------EETTEEEETTEEEEECTTEEECCEEESSCEEEEEEESSCTTST
T ss_pred             eeeccceeEEEEeeec----------------cCceeeEcCCCCccCccccCCCCcCcCCceEEEEEeCccccee
Confidence            3588888889999976                249999999999999       444566677777765554444

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=86.42  E-value=8.6  Score=29.86  Aligned_cols=71  Identities=14%  Similarity=0.113  Sum_probs=51.7

Q ss_pred             cCcccceecCcceEEEEeeeeEEEEE--ecCCCcEE----EEEEcCCcEEEeCCC--CeeeeeeC-CCCcEEEEEEecCC
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYFDV--RDESDQWI----RIWIKAGDLIVLPAG--IYHRFTLD-TSNYVKVMQILSYG  153 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f~i--~~~~~~~~----~~~v~~GDli~iP~g--~~H~f~~~-~~~~~~~ir~f~~~  153 (160)
                      ++..+.|-|..--++.|++|+..-.+  ...++...    ...+.+||++.++++  -.|+..+. .......|-+|...
T Consensus        83 Gq~spiHDH~swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d~~avSLHvYg~p  162 (211)
T 3uss_A           83 GQITPVHDHRVWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSDRTSISIHVYGAN  162 (211)
T ss_dssp             TCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSSCEEEEEEESSC
T ss_pred             CCcCCCCCCCeeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCCCCEEEEEEcCCC
Confidence            45678999998899999999886544  11122211    378999999999988  79999865 34567777777653

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=85.73  E-value=1.2  Score=38.57  Aligned_cols=47  Identities=19%  Similarity=0.301  Sum_probs=36.3

Q ss_pred             eEEEEeeeeEEEEEec-------------------------CCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           95 EIRYCLEGSGYFDVRD-------------------------ESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        95 Ei~yvl~G~g~f~i~~-------------------------~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      -.+.++.|+=.|.+--                         ..++++++.+++||.|+||+|-.|...+.+.
T Consensus       255 ~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIPsGWwH~V~nled  326 (447)
T 3kv4_A          255 VWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIHAVLTPVD  326 (447)
T ss_dssp             EEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEECTTCEEEEEESSC
T ss_pred             eeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecCCCCeEEEecCCC
Confidence            3567888887777631                         1235789999999999999999999876543

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}

Probab=85.69  E-value=0.92  Score=38.80  Aligned_cols=37  Identities=30%  Similarity=0.332  Sum_probs=28.2

Q ss_pred             EEEEEcCCcEEEeCCCCeeeeeeCCCCcEE-EEEEecCC
Q 031374          116 IRIWIKAGDLIVLPAGIYHRFTLDTSNYVK-VMQILSYG  153 (160)
Q Consensus       116 ~~~~v~~GDli~iP~g~~H~f~~~~~~~~~-~ir~f~~~  153 (160)
                      +.+.-++||.|+||||-+|...+-.+ .++ +.-|++.+
T Consensus       293 ~~~~Q~~GeavfiPaG~~HQV~Nl~~-~i~va~df~spe  330 (392)
T 2ypd_A          293 CTLIQFLGDAIVLPAGALHQVQNFHS-CIQVTEDFVSPE  330 (392)
T ss_dssp             EEEEEETTCEEEECTTCEEEEEESSE-EEEEEEEECCGG
T ss_pred             EEEEEcCCCEEEecCCCHHHHhcccc-hhhHhhhhcChh
Confidence            47888999999999999999987664 343 55555543

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=85.65  E-value=2  Score=35.26  Aligned_cols=51  Identities=18%  Similarity=0.219  Sum_probs=28.0

Q ss_pred             cccceecC-c-ceEEEEe-e-eeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeee
Q 031374           85 FYTEHIHA-D-EEIRYCL-E-GSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHR  135 (160)
Q Consensus        85 ~~~~H~H~-~-~Ei~yvl-~-G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~  135 (160)
                      -++.|.|+ . ++.+|+- . ....|..-+..|+-.-+.|+-||.|++|+|-+|.
T Consensus       195 SyPpHkHDrr~E~yyYF~l~p~~~v~h~~g~pdEtrh~~V~n~daVlvP~wgyHp  249 (289)
T 1ywk_A          195 TMPCHTHERRMEAYVYFDMEEDTRIFHMMGKPDETKHLVMSNEQAAISPSWSIHS  249 (289)
T ss_dssp             C--------CEEEEEEESCCTTCCEEEEESSTTSCEEEEECTTEEEEECTTSCCC
T ss_pred             CCCCccCCCCCeeEEEEEeCCCCeEEEECCCCCceEEEEEECCCEEEeCCCcccC
Confidence            36899998 3 3444442 1 1234444445555556889999999999999996

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=85.35  E-value=3.1  Score=34.07  Aligned_cols=57  Identities=18%  Similarity=0.188  Sum_probs=36.4

Q ss_pred             cccceecC--cceEEEEe---eeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374           85 FYTEHIHA--DEEIRYCL---EGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        85 ~~~~H~H~--~~Ei~yvl---~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~  143 (160)
                      -++.|.|+  .||++|+-   .|.+ |+.-+..++-..+.|+-||.|++|.+-.|.-- +.+++
T Consensus       195 SyPpHkHDrr~EeyyYF~l~~~gfv-~q~~g~p~Etrhi~V~n~daVlvP~wh~h~~~-G~~~Y  256 (282)
T 1xru_A          195 TMPCHTHERRMEVYFYFNMDDDACV-FHMMGQPQETRHIVMHNEQAVISPSWSIHSGV-GTKAY  256 (282)
T ss_dssp             SCSEEECTTEEEEEEEESCCTTCCE-EEEEEETTEEEEEEECSSEEEEECTTCEEEEE-ESSCC
T ss_pred             CCCCccCCCCceEEEEEEeCCCCEE-EEEeCCCCCeeEEEEECCCEEEeCCCCCCCCC-Cccce
Confidence            37899998  36676664   1333 33334445544578999999999975566633 44343

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}

Probab=84.37  E-value=1.5  Score=36.78  Aligned_cols=41  Identities=17%  Similarity=0.174  Sum_probs=29.7

Q ss_pred             EEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcccC
Q 031374          115 WIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQ  157 (160)
Q Consensus       115 ~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w~  157 (160)
                      ++++.=+|||+|+++||.+||.-+.+  +...+-.-...|-|.
T Consensus       278 vyr~~QkpGd~Vi~~PgayH~v~n~G--~~~n~awN~a~~~~~  318 (332)
T 2xxz_A          278 VYRFVQRPGDLVWINAGTVHWVQATG--WCNNIAWNVGPLTAY  318 (332)
T ss_dssp             CEEEEECTTCEEEECTTCEEEEEESS--SEEEEEEEEESCTTG
T ss_pred             eEEEEECCCCEEEECCCceEEEEecc--eeeEEEEEeCCCcHH
Confidence            55788899999999999999976654  344454544555554

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=84.36  E-value=0.98  Score=38.34  Aligned_cols=54  Identities=20%  Similarity=0.269  Sum_probs=38.9

Q ss_pred             ccceecCcc--eEEEEeeeeEEEEEec-------------------------CCCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374           86 YTEHIHADE--EIRYCLEGSGYFDVRD-------------------------ESDQWIRIWIKAGDLIVLPAGIYHRFTL  138 (160)
Q Consensus        86 ~~~H~H~~~--Ei~yvl~G~g~f~i~~-------------------------~~~~~~~~~v~~GDli~iP~g~~H~f~~  138 (160)
                      ...|.....  -.+.++.|+=.|.+--                         ..++++++.+++||.|+||+|-.|...+
T Consensus       160 T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIPsGWwH~V~n  239 (371)
T 3k3o_A          160 TDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIHAVLT  239 (371)
T ss_dssp             EEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTCEEEECTTCEEEEEE
T ss_pred             CCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCceEEEEECCCcEEEeCCCCeEEEec
Confidence            444555433  2457888887777631                         1245789999999999999999999765


Q ss_pred             C
Q 031374          139 D  139 (160)
Q Consensus       139 ~  139 (160)
                      -
T Consensus       240 l  240 (371)
T 3k3o_A          240 P  240 (371)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=84.32  E-value=1.5  Score=38.13  Aligned_cols=57  Identities=21%  Similarity=0.221  Sum_probs=40.0

Q ss_pred             cccceecCc--ceEEEEeeeeEEEEEecC-------------------------CCcEEEEEEcCCcEEEeCCCCeeeee
Q 031374           85 FYTEHIHAD--EEIRYCLEGSGYFDVRDE-------------------------SDQWIRIWIKAGDLIVLPAGIYHRFT  137 (160)
Q Consensus        85 ~~~~H~H~~--~Ei~yvl~G~g~f~i~~~-------------------------~~~~~~~~v~~GDli~iP~g~~H~f~  137 (160)
                      +...|....  .-...++.|+=.|.+--.                         .++.+++.+++||+|+||+|=.|...
T Consensus       208 ~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfIPsGWwH~V~  287 (451)
T 2yu1_A          208 YTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVY  287 (451)
T ss_dssp             EEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEECTTCEEEEE
T ss_pred             CCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEeCCCceEEEe
Confidence            344555543  245677888777765211                         13578999999999999999999987


Q ss_pred             eCCC
Q 031374          138 LDTS  141 (160)
Q Consensus       138 ~~~~  141 (160)
                      +.+.
T Consensus       288 nled  291 (451)
T 2yu1_A          288 TPTD  291 (451)
T ss_dssp             CSSC
T ss_pred             cCCC
Confidence            6553

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=84.10  E-value=0.62  Score=40.29  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.4

Q ss_pred             EEEEcCCcEEEeCCCCeeeeeeC
Q 031374          117 RIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus       117 ~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      .+.++|||.++||||++|.+-.+
T Consensus       267 ~v~L~pGea~flpAg~~HAYl~G  289 (440)
T 1pmi_A          267 HVGLNKGEAMFLQAKDPHAYISG  289 (440)
T ss_dssp             EEEECTTCEEEECTTCCEEEEEE
T ss_pred             eEecCCCCEEecCCCCccccCCC
Confidence            68899999999999999987543

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=83.82  E-value=1.1  Score=38.39  Aligned_cols=54  Identities=19%  Similarity=0.249  Sum_probs=38.9

Q ss_pred             ccceecCc--ceEEEEeeeeEEEEEec-------------------------CCCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374           86 YTEHIHAD--EEIRYCLEGSGYFDVRD-------------------------ESDQWIRIWIKAGDLIVLPAGIYHRFTL  138 (160)
Q Consensus        86 ~~~H~H~~--~Ei~yvl~G~g~f~i~~-------------------------~~~~~~~~~v~~GDli~iP~g~~H~f~~  138 (160)
                      ...|.-..  .-.+.++.|+=.|.+--                         ..++++++.+++||.|+||+|-.|...+
T Consensus       187 T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIPsGWwH~V~n  266 (392)
T 3pua_A          187 TDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIPSGWIYATLT  266 (392)
T ss_dssp             EEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEECTTCEEEEEE
T ss_pred             CCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeCCCceEEEec
Confidence            34455433  34667888887777621                         1135789999999999999999999765


Q ss_pred             C
Q 031374          139 D  139 (160)
Q Consensus       139 ~  139 (160)
                      .
T Consensus       267 l  267 (392)
T 3pua_A          267 P  267 (392)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=83.09  E-value=3.8  Score=27.79  Aligned_cols=58  Identities=12%  Similarity=0.001  Sum_probs=38.9

Q ss_pred             cceEEEEeeeeEEEEEecCCCc-EEEEEEcCCcEEEeC---CCCeeeeeeCCCCcEEEEEEe
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLIVLP---AGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~-~~~~~v~~GDli~iP---~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      .+.+++|++|.......+.+++ .+.-.+.+||++=..   .+.++.++......+.++++-
T Consensus        46 ~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~  107 (149)
T 2pqq_A           46 GDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALG  107 (149)
T ss_dssp             ECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGGTSCEECSSEEEESSCEEEEEEE
T ss_pred             CCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHhcCCCCcceEEEEccceEEEEEe
Confidence            4579999999999887655544 556788999987322   344555555445556666653

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=81.14  E-value=1.3  Score=39.27  Aligned_cols=56  Identities=21%  Similarity=0.326  Sum_probs=39.5

Q ss_pred             CcccceecCc--ceEEEEeeeeEEEEEecC-------------------------CCcEEEEEEcCCcEEEeCCCCeeee
Q 031374           84 NFYTEHIHAD--EEIRYCLEGSGYFDVRDE-------------------------SDQWIRIWIKAGDLIVLPAGIYHRF  136 (160)
Q Consensus        84 ~~~~~H~H~~--~Ei~yvl~G~g~f~i~~~-------------------------~~~~~~~~v~~GDli~iP~g~~H~f  136 (160)
                      .+...|.-..  .-.+.++.|.=.|.+--.                         .+.++++.++|||.|+||+|-.|..
T Consensus       307 S~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~~~~~wfgd~l~~~~~~v~l~pGEtlfIPsGW~HaV  386 (528)
T 3pur_A          307 SYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIPAGWIHAV  386 (528)
T ss_dssp             EEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSSCCSCCGGGGTTTCCEEEEEETTCEEEECTTCEEEE
T ss_pred             CCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCCchhhhhcccccccEEEEEECCCCEEEecCCceEEE
Confidence            4445555543  346777888777765321                         2357899999999999999999986


Q ss_pred             eeC
Q 031374          137 TLD  139 (160)
Q Consensus       137 ~~~  139 (160)
                      .+-
T Consensus       387 ~tl  389 (528)
T 3pur_A          387 LTP  389 (528)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            653

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=80.98  E-value=1.3  Score=38.75  Aligned_cols=55  Identities=20%  Similarity=0.256  Sum_probs=40.2

Q ss_pred             cccceecCcc--eEEEEeeeeEEEEEecC-------------------------CCcEEEEEEcCCcEEEeCCCCeeeee
Q 031374           85 FYTEHIHADE--EIRYCLEGSGYFDVRDE-------------------------SDQWIRIWIKAGDLIVLPAGIYHRFT  137 (160)
Q Consensus        85 ~~~~H~H~~~--Ei~yvl~G~g~f~i~~~-------------------------~~~~~~~~v~~GDli~iP~g~~H~f~  137 (160)
                      +...|.....  -.+.++.|+=.|.+--.                         .++++++.+++||+|+||+|-.|...
T Consensus       278 ~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIPsGWwH~V~  357 (488)
T 3kv5_D          278 YTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVL  357 (488)
T ss_dssp             EEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEECTTCEEEEE
T ss_pred             CCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeCCCceEEee
Confidence            3455665433  35678889887777422                         23578999999999999999999976


Q ss_pred             eC
Q 031374          138 LD  139 (160)
Q Consensus       138 ~~  139 (160)
                      +-
T Consensus       358 nl  359 (488)
T 3kv5_D          358 TS  359 (488)
T ss_dssp             EE
T ss_pred             CC
Confidence            54

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1vr3a1	179	b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse	5e-70
d1zrra1	179	b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebs	7e-40
d2phda1	351	b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Ps	4e-07
d2phda1	351	b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Ps	6e-05
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	4e-07
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	8e-04
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	7e-07
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	7e-06
d3bu7a1	355	b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Si	1e-06
d3bu7a1	355	b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Si	4e-05
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	1e-06
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	6e-06
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	6e-06
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	0.002
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	6e-05
d1yhfa1	112	b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {S	2e-04
d1sfna_	245	b.82.1.11 (A:) Hypothetical protein DR1152 {Deinoc	2e-04
d1x82a_	190	b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {	3e-04
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	5e-04
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	6e-04
d2f4pa1	134	b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Th	7e-04
d2arca_	161	b.82.4.1 (A:) Regulatory protein AraC {Escherichia	8e-04
d2pyta1	128	b.82.1.24 (A:100-227) Ethanolamine utilization pro	0.001
d1rc6a_	253	b.82.1.11 (A:) Hypothetical protein YlbA {Escheric	0.001
d1rc6a_	253	b.82.1.11 (A:) Hypothetical protein YlbA {Escheric	0.004
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	0.002
d1sefa_	250	b.82.1.11 (A:) Hypothetical protein EF2996 {Entero	0.003
d1zvfa1	175	b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-diox	0.004
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	0.004

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  207 bits (528), Expect = 5e-70
 Identities = 92/149 (61%), Positives = 117/149 (78%), Gaps = 1/149 (0%)

Query: 1   MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREAR 60
           MV +AW+MDES+ D R PH   P + VSL+QL  LGVLYW+L+   YEND EL+KIR+ R
Sbjct: 1   MV-QAWYMDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKMR 59

Query: 61  GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWI 120
            YS+MD++ +C + + NYEEK+K F+ EH+H DEEIRY LEGSGYFDVRD+ D+WIRI +
Sbjct: 60  NYSWMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISM 119

Query: 121 KAGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
           + GD+I LPAGIYHRFTLD  NYVK M++
Sbjct: 120 EKGDMITLPAGIYHRFTLDEKNYVKAMRL 148

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]} Length = 179

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

 Score =  130 bits (329), Expect = 7e-40
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 16/154 (10%)

Query: 8   MDESSQDQRLPHHLNPKQFVSLDQLAELGVLY--WRLNPKNYEN----------DEELQK 55
                    L H  N +      QL   GV +  W+ +                   + K
Sbjct: 6   FSVKDPQNSLWHSTNAE--EIQQQLNAKGVRFERWQADRDLGAAPTAETVIAAYQHAIDK 63

Query: 56  IREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQW 115
           +   +GY   D++ L  +     E   + F  EH H ++E+R+ +EG+G F +    D+ 
Sbjct: 64  LVAEKGYQSWDVISLRADN-PQKEALREKFLNEHTHGEDEVRFFVEGAGLFCLHIG-DEV 121

Query: 116 IRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI 149
            ++  +  DLI +PA   H F + +      ++I
Sbjct: 122 FQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRI 155

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Length = 351

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 16/140 (11%), Positives = 36/140 (25%), Gaps = 10/140 (7%)

Query: 9   DESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLL 68
                    P      +F       +L +               ++ +    G   M  L
Sbjct: 204 SGLQNTVASPIGAYRWEFTDRALTEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPTL 263

Query: 69  DLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVL 128
                ++    E               +    EG+G   +  E+ +      + GD+ V+
Sbjct: 264 RCEFHRLRAGTET-----ATRNEVGSTVFQVFEGAGAVVMNGETTKL-----EKGDMFVV 313

Query: 129 PAGIYHRFTLDTSNYVKVMQ 148
           P+ +      +T   +    
Sbjct: 314 PSWVPWSLQAETQFDLFRFS 333

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Length = 351

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ 148
           H H+    R+ +EG G + V +       + +  GDL++ P   +H    DT   +  + 
Sbjct: 103 HRHSQNAFRFVVEGEGVWTVVNGD----PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWID 158

Query: 149 IL 150
            L
Sbjct: 159 GL 160

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 46.1 bits (108), Expect = 4e-07
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 89  HIHADE-EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147
           H H    E  YCLEG        +  Q        GD + +PA   H +    S+Y K++
Sbjct: 230 HYHEYHTETFYCLEGQMTMWTDGQEIQL-----NPGDFLHVPANTVHSYR-LDSHYTKMV 283

Query: 148 QILS 151
            +L 
Sbjct: 284 GVLV 287

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.4 bits (83), Expect = 8e-04
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 88  EHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKV 146
            H+H D  E    L+G     +  E     R  + +GD   +PAG  H + + +     V
Sbjct: 57  LHVHKDTHEGILVLDGKLELTLDGE-----RYLLISGDYANIPAGTPHSYRMQSHRTRLV 111

Query: 147 MQILSYGVQR 156
              +   V  
Sbjct: 112 SYTMKGNVAH 121

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 45.2 bits (106), Expect = 7e-07
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ 148
               D  I + +EGSG   + +E+  +      A D+ V+P      F     + +    
Sbjct: 238 ARTTDSTIYHVVEGSGQVIIGNETFSF-----SAKDIFVVPTWHGVSFQTTQDSVLFSFS 292

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (99), Expect = 7e-06
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ 148
           H H    +R+ +EG G F   D      R  +  GD I+ P   +H         V  + 
Sbjct: 70  HRHNQSALRFIVEGKGAFTAVDGE----RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLD 125

Query: 149 ILSYGVQRQSD 159
            L   +     
Sbjct: 126 GLDLPLVNILG 136

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Length = 355

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
           H H    I    +G GY  V  +   W        D+  +PA  +H  
Sbjct: 272 HRHTGNVIYNVAKGQGYSIVGGKRFDW-----SEHDIFCVPAWTWHEH 314

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Length = 355

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
           H HA   +R+ +EGSG + + D      ++ + A D ++ P G +H  
Sbjct: 101 HRHAASALRFIMEGSGAYTIVDG----HKVELGANDFVLTPNGTWHEH 144

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 89  HIHADE-EIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM 147
           HIH    E  YC +GS     +  ++      + +GD   +P  + H F +      ++ 
Sbjct: 64  HIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQI-QDPDTEMT 122

Query: 148 QILSYGV 154
            ++  G 
Sbjct: 123 GVIVPGG 129

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 42.5 bits (99), Expect = 6e-06
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQ 148
                       EG     + D       +   +GD+  +P G+  ++    + + KV+ 
Sbjct: 266 WSFPGACAFQVQEGRVVVQIGDY--AATEL--GSGDVAFIPGGVEFKYYS-EAYFSKVLF 320

Query: 149 ILS 151
           + S
Sbjct: 321 VSS 323

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.7 bits (100), Expect = 6e-06
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 85  FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYH 134
               H H + E  Y + GS    + DE  +     +  GDL   P+G+ H
Sbjct: 84  IRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPH 133

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 1/62 (1%)

Query: 75  VTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYH 134
           +   E         H +  E  +Y + G     V            +AGD+  +P  + H
Sbjct: 254 LVTVEPGAMRELHWHPNTHE-WQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGH 312

Query: 135 RF 136
             
Sbjct: 313 YV 314

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 85  FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
                 H  E   Y LEG   + +  +   W+   ++AGD + L A      
Sbjct: 202 IPFAETHVMEHGLYVLEGKAVYRLNQD---WVE--VEAGDFMWLRAFCPQAC 248

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Length = 112

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 37.0 bits (85), Expect = 2e-04
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 5/50 (10%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137
            H    + +   L G     +  E        +  G  IV+PAGI H   
Sbjct: 52  RHSSPGDAMVTILSGLAEITIDQE-----TYRVAEGQTIVMPAGIPHALY 96

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 85  FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
                +H  E     LEG G + + +    +  +   AGD+I + A     +
Sbjct: 178 LPYAEVHYMEHGLLMLEGEGLYKLEEN---YYPV--TAGDIIWMGAHCPQWY 224

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 190

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 89  HIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137
           H   D  E+   L+G G   ++        I ++ G ++ +P    HR  
Sbjct: 91  HAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTV 140

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 36.5 bits (84), Expect = 5e-04
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYH 134
           H  +D  +   LEG     + +   +     +  GD I + AG   
Sbjct: 58  HSDSDL-LVLVLEGQAILVLVNPDGRDTYK-LDQGDAIKIQAGTPF 101

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 47  YENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYF 106
           +EN     ++ +        L +L   ++  ++ K       H    + + + L G    
Sbjct: 18  FENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAIL 77

Query: 107 DVRDESDQWIRIWIKAGDLIVLPAGIYH 134
            + +  D+     +  GD   +PAG  +
Sbjct: 78  TLVNNDDRDSYN-LHPGDAQRIPAGTTY 104

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} Length = 134

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.4 bits (81), Expect = 7e-04
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
           H H   +I     G G++  R +  + ++     GD++ +P  + H  
Sbjct: 51  HSHPGGQILIVTRGKGFYQERGKPARILK----KGDVVEIPPNVVHWH 94

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]} Length = 161

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (82), Expect = 8e-04
 Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 5/55 (9%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN 142
                   +   + G G    +           + GD+++ P G  H +      
Sbjct: 33  PLGMKGYILNLTIRGQGVVKNQGR-----EFVCRPGDILLFPPGEIHHYGRHPEA 82

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} Length = 128

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 87  TEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT 137
                 + +EI   LEG  +     E      +  KAGD++ +P G    F 
Sbjct: 65  FFPWTLNYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFG 111

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Length = 253

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
             H  E   Y L G G +++ +    WI +  K GD I + A      
Sbjct: 188 ETHVQEHGAYILSGQGVYNLDNN---WIPV--KKGDYIFMGAYSLQAG 230

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Length = 253

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

 Score = 34.0 bits (77), Expect = 0.004
 Identities = 7/49 (14%), Positives = 12/49 (24%), Gaps = 5/49 (10%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
                 E   Y + G+       ++          G  +  P G    F
Sbjct: 68  FGGEGIETFLYVISGNITAKAEGKTFAL-----SEGGYLYCPPGSLMTF 111

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 89  HIHAD-EEIRYCLEGSGYFDVRDESDQWIRIW---IKAGDLIVLPAGIYH 134
           HIH    EI   ++G     +    D   +++   ++AG+  V+P G+ H
Sbjct: 88  HIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMH 137

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Length = 250

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 88  EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRF 136
              H  E   Y + G G +++ +E   W  +  + GD I + A +    
Sbjct: 184 IETHVQEHGAYLISGQGMYNLDNE---WYPV--EKGDYIFMSAYVPQAA 227

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.0 bits (78), Expect = 0.004
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 89  HIHADEEIRYCLEGSGYFDVRDESD---QWIRIWIKAGDLIVLPAGIYHR 135
           HI+   E  Y  +GS    V DE+D   ++I I I  GD  +LP  + H 
Sbjct: 49  HINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHS 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	100.0
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	100.0
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.49
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.39
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	99.29
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.28
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.22
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.19
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.19
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.15
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	99.12
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.01
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	99.01
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.0
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.0
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.97
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.96
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	98.96
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	98.92
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	98.89
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	98.87
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.86
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	98.86
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	98.85
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	98.83
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	98.82
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.82
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.76
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.75
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.74
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.74
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	98.73
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.73
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	98.73
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	98.7
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	98.62
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.61
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.59
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.57
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	98.55
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.53
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.52
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.5
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.44
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	98.36
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	98.29
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	97.85
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	97.79
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.7
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	97.68
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	97.17
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	97.15
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	96.37
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	96.1
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	96.01
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	95.96
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	95.88
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	95.62
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	95.57
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	95.41
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	95.13
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	94.65
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	93.43
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	93.02
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	92.93
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	92.9
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	92.35
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	92.32
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	91.74
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	91.45
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	91.25
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	91.08
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	89.85
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	89.13
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	89.08
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	86.43

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.3e-56  Score=343.64  Aligned_cols=157  Identities=57%  Similarity=1.064  Sum_probs=154.4

Q ss_pred             ceEEEEecCCCCCCCCCCccCCCCcCCHhHHhhcCcEEEecCCCCCCChHHHHHHHHhcCCceeeeeeeCCCcccCHHHH
Q 031374            2 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEK   81 (160)
Q Consensus         2 ~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~L~~~GV~~w~~~~~~~~~~~~l~~l~~~~gy~~~dvi~v~~~~~p~~~~~   81 (160)
                      ||+|||||++++|||+||+++|+++||+++|+++||.||++++++++++++|++|++++||+++|+|+|+|+++|||+++
T Consensus         1 m~~aw~~d~~~~d~r~ph~~~p~~~v~~~~L~~lGV~y~~~~~~~~~~~~~l~~l~~ergY~~~D~i~l~p~~~pn~~~~   80 (179)
T d1vr3a1           1 MVQAWYMDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKMRNYSWMDIITICKDTLPNYEEK   80 (179)
T ss_dssp             CCEEEEBCSCCSCTTSCCBCSSCCBCCHHHHHHTTCEEEECCGGGTTSCHHHHHHHHHHTCCEEEEEEESTTTSTTHHHH
T ss_pred             CceEEEecCCCcccccCcccCCCCccCHHHHHhhCCEEEEecCccccccHHHHHHHHhcCCCceEEEEECCccCCCHHHH
Confidence            89999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             hcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcccCC
Q 031374           82 LKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQS  158 (160)
Q Consensus        82 ~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w~~  158 (160)
                      +++|+.+|+|+++||+||++|+|+|.+++.+++|+++.|++||+|+||+|++|||+++++++++|||||+++|+|+.
T Consensus        81 ~~~F~~EH~H~~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~~~v~aiRlF~~~~~W~~  157 (179)
T d1vr3a1          81 IKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGEPVWTP  157 (179)
T ss_dssp             HHHHHSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSSCCCCC
T ss_pred             HHHHhhceeCCCcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCCCCEEEEEEECCCCeeeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999985

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=100.00  E-value=1.9e-39  Score=251.52  Aligned_cols=148  Identities=22%  Similarity=0.426  Sum_probs=134.4

Q ss_pred             ecCCCCCCCCCCccCCCCcCCHhHHhhcCcEE--EecCCCCCCC----------hHHHHHHHHhcCCceeeeeeeCCCcc
Q 031374            8 MDESSQDQRLPHHLNPKQFVSLDQLAELGVLY--WRLNPKNYEN----------DEELQKIREARGYSYMDLLDLCPEKV   75 (160)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~GV~~--w~~~~~~~~~----------~~~l~~l~~~~gy~~~dvi~v~~~~~   75 (160)
                      +.++++++++.++.+++++  +++|+++||+|  |+++.+..+.          +.+|++|++++||++.|+|+++|++ 
T Consensus         6 ~~~~~~~~~~~~~~~~~~i--~~~L~~~gv~~e~W~~~~~~~~~a~~~~iL~ay~~~i~~L~~e~Gy~~~D~i~l~p~~-   82 (179)
T d1zrra1           6 FSVKDPQNSLWHSTNAEEI--QQQLNAKGVRFERWQADRDLGAAPTAETVIAAYQHAIDKLVAEKGYQSWDVISLRADN-   82 (179)
T ss_dssp             ECSSCSSCEEEEECCSHHH--HHHHHHTTCCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCCTTC-
T ss_pred             ecCCCcccccccCCCHHHH--HHHHHHCCeEEEeccCCCcCCCcccHHHHHHHHHHHHHHHHHhCCCceEEEEEeCCCC-
Confidence            5567778888888888887  89999999998  8887654322          5778999999999999999999986 


Q ss_pred             cCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcc
Q 031374           76 TNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQ  155 (160)
Q Consensus        76 p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~  155 (160)
                      |++++++++|+.+|+|+++|++||++|+|+|.+++ +|+|+++.|++||+|+||+|++|||+++++++++|||||.+.|.
T Consensus        83 p~~~~~~~kF~~EH~H~~dEvr~vv~G~g~f~v~~-~d~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRlF~~~~g  161 (179)
T d1zrra1          83 PQKEALREKFLNEHTHGEDEVRFFVEGAGLFCLHI-GDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNPEG  161 (179)
T ss_dssp             THHHHHHHHHHSCBEESSCEEEEEEESCCCCCEEC-SSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCGGG
T ss_pred             CCHHHHHHHhcccccCCCceEEEEEeCeEEEEEEc-CCeEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEEecCCCC
Confidence            99999999999999999999999999999999996 57899999999999999999999999999999999999999999


Q ss_pred             cCCC
Q 031374          156 RQSD  159 (160)
Q Consensus       156 w~~~  159 (160)
                      |+.+
T Consensus       162 W~~~  165 (179)
T d1zrra1         162 WIAQ  165 (179)
T ss_dssp             EESC
T ss_pred             Ceee
Confidence            9753

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.49  E-value=7.1e-14  Score=98.32  Aligned_cols=71  Identities=10%  Similarity=0.121  Sum_probs=65.0

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcccCC
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQRQS  158 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~w~~  158 (160)
                      ...+.|+|+.+|++||++|++.+.+++++    .+.+++||++.+|+|+.|++.+.++..+.++.+.+..|.|.+
T Consensus        37 ~~~p~H~H~~~e~~~Vl~G~~~~~v~~~e----~~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v~~P~p~~~~  107 (108)
T d2b8ma1          37 EQMPKHYSNSYVHLIIIKGEMTLTLEDQE----PHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPHPKKLN  107 (108)
T ss_dssp             CBCCCEECSSCEEEEEEESEEEEEETTSC----CEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECSCGGGGC
T ss_pred             CcChhhcccccEEEEEEeeeEEEEEeccc----EEEeecceEeeccCCceEEEEcCCCCcEEEEEEECCCCccCC
Confidence            44689999999999999999999998752    588999999999999999999998899999999999999875

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.39  E-value=5.9e-13  Score=91.56  Aligned_cols=66  Identities=20%  Similarity=0.305  Sum_probs=60.2

Q ss_pred             CcccceecCc-ceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCc
Q 031374           84 NFYTEHIHAD-EEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV  154 (160)
Q Consensus        84 ~~~~~H~H~~-~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p  154 (160)
                      .....|+|.. +|++||++|++.+.++++     .+.+++||++.+|+|+.|++.+.++..++++.+++..|
T Consensus        39 ~~~~~H~H~~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v~~P~p  105 (105)
T d1v70a_          39 QAQKVHVHEGSDKVYYALEGEVVVRVGEE-----EALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAPRP  105 (105)
T ss_dssp             CEEEEECCSSCEEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEESCC
T ss_pred             CCCcceECCCCeEEEEEEeeEEEEEEeee-----EEEecceEEEEeCCCCEEEeEECCCCCEEEEEEECCCC
Confidence            4568999985 799999999999999987     89999999999999999999998888999999988776

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.29  E-value=4.8e-12  Score=88.81  Aligned_cols=62  Identities=19%  Similarity=0.265  Sum_probs=54.3

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      ....+|.|+.+|++||++|++.|.++++     .+.+++||++++|+|+.|++.+.++..+.++.+.
T Consensus        48 ~~~~~H~h~~~~~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~a~~~~~~l~~vi~  109 (112)
T d1yhfa1          48 QEIGRHSSPGDAMVTILSGLAEITIDQE-----TYRVAEGQTIVMPAGIPHALYAVEAFQMLLVVVK  109 (112)
T ss_dssp             CEEEEECCSSEEEEEEEESEEEEEETTE-----EEEEETTCEEEECTTSCEEEEESSCEEEEEEEEC
T ss_pred             CCcceEECCCCEEEEEEeCEEEEEEccE-----EEEecCCEEEEcCCCCeEEeEECCCcEEEEEEEC
Confidence            4568999999999999999999999988     8999999999999999999999876555555443

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=5.2e-12  Score=88.77  Aligned_cols=72  Identities=21%  Similarity=0.264  Sum_probs=62.7

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcE
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYV  144 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~  144 (160)
                      .-.+++.|+          ...+.|.|+.+|++||++|++.+.++++     .+.+++||++.+|+|..|++.+.++..+
T Consensus        38 ~~~~~i~pG----------~~~~~H~H~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ip~~~~H~~~n~~~~~~  102 (114)
T d1vj2a_          38 MRLFTVEPG----------GLIDRHSHPWEHEIFVLKGKLTVLKEQG-----EETVEEGFYIFVEPNEIHGFRNDTDSEV  102 (114)
T ss_dssp             EEEEEEEEE----------EEEEEECCSSCEEEEEEESEEEEECSSC-----EEEEETTEEEEECTTCCEEEECCSSSCE
T ss_pred             EEEEEECCC----------CCCCceECCCcEEEEEEEceeEEEEeee-----eeEEecCeEEEEcCCCeEEEEeCCCCCE
Confidence            445666654          3468899999999999999999999988     9999999999999999999999888889


Q ss_pred             EEEEEec
Q 031374          145 KVMQILS  151 (160)
Q Consensus       145 ~~ir~f~  151 (160)
                      .+|.++.
T Consensus       103 ~~l~iip  109 (114)
T d1vj2a_         103 EFLCLIP  109 (114)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            8888863

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=1.6e-11  Score=86.44  Aligned_cols=70  Identities=26%  Similarity=0.353  Sum_probs=58.5

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~  143 (160)
                      ...+++.|+.          ..+.|+|. .+|++||++|++.+.++++     .+.+++||++.+|+|..|++.+.++..
T Consensus        41 ~~~~~~~PG~----------~~~~H~H~~~~E~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~ip~g~~H~~~N~g~~~  105 (115)
T d1o4ta_          41 FARMKLPPGS----------SVGLHKHEGEFEIYYILLGEGVFHDNGK-----DVPIKAGDVCFTDSGESHSIENTGNTD  105 (115)
T ss_dssp             EEEEEECTTC----------EEEEEECCSEEEEEEEEESEEEEEETTE-----EEEEETTEEEEECTTCEEEEECCSSSC
T ss_pred             EEEEEECCCC----------CcCCEECCCCcEEEEEEECcceEEEcCe-----eEEeeccEEEEECCCCeEEEEECCCCC
Confidence            3455677653          35789998 4899999999999999987     899999999999999999999887777


Q ss_pred             EEEEEE
Q 031374          144 VKVMQI  149 (160)
Q Consensus       144 ~~~ir~  149 (160)
                      +..+.+
T Consensus       106 ~~~l~I  111 (115)
T d1o4ta_         106 LEFLAV  111 (115)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            776544

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.19  E-value=3e-11  Score=89.95  Aligned_cols=82  Identities=21%  Similarity=0.176  Sum_probs=65.7

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCC----CcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDES----DQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~----~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      .-++++.|+.          ....|.|..+|++||++|++.+.+.+..    ++.-++.+++||+++||+|+.|.+.+++
T Consensus        43 v~~~~l~PG~----------~~~~H~H~~~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~~~iP~~~~H~~~N~g  112 (160)
T d1lr5a_          43 VWLQTISPGQ----------RTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSD  112 (160)
T ss_dssp             EEEEEECTTC----------BCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCC
T ss_pred             EEEEEECCCc----------cccceeccccEEEEEEeeeEEEEECCccccccccceEEEecCCCEEEeCCCCcEEEEECC
Confidence            4455667653          3578999999999999999999998742    1234799999999999999999999865


Q ss_pred             -CCcEEEEEEecCCccc
Q 031374          141 -SNYVKVMQILSYGVQR  156 (160)
Q Consensus       141 -~~~~~~ir~f~~~p~w  156 (160)
                       ...+.++.+++..|..
T Consensus       113 ~~E~l~~l~i~~~~p~~  129 (160)
T d1lr5a_         113 EHEDLQVLVIISRPPAK  129 (160)
T ss_dssp             SSSCEEEEEEEESSSCC
T ss_pred             CCCCEEEEEEECCCCce
Confidence             4789998888776653

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=4.7e-11  Score=87.10  Aligned_cols=74  Identities=18%  Similarity=0.272  Sum_probs=62.2

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcE
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYV  144 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~  144 (160)
                      .-.+++.|+.          ...+|+|+.+|++||++|++++.+.+..    .+.+++||.|++|||+.||+.+.++..+
T Consensus        37 ~~~vtf~PG~----------~~~~H~H~~~q~~~Vl~G~~~~~~~g~~----~~~~~~Gd~v~ippg~~H~~~a~~~~~~  102 (134)
T d2f4pa1          37 VYDVVFEPGA----------RTHWHSHPGGQILIVTRGKGFYQERGKP----ARILKKGDVVEIPPNVVHWHGAAPDEEL  102 (134)
T ss_dssp             EEEEEECTTC----------EECSEECTTCEEEEEEEEEEEEEETTSC----CEEEETTCEEEECTTCCEEEEEBTTBCE
T ss_pred             EEEEEECCCC----------cCccccCCCCEEEEEEeCEEEEEECCcc----eEEEcCCCeEEECCCCceECccCCCCcE
Confidence            4456667653          3579999999999999999999996542    5899999999999999999999988888


Q ss_pred             EEEEEecC
Q 031374          145 KVMQILSY  152 (160)
Q Consensus       145 ~~ir~f~~  152 (160)
                      ..|.+...
T Consensus       103 ~~lai~~~  110 (134)
T d2f4pa1         103 VHIGISTQ  110 (134)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEec
Confidence            88877654

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.15  E-value=8.5e-11  Score=80.71  Aligned_cols=60  Identities=17%  Similarity=0.037  Sum_probs=52.6

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      ...|.|..+|+.||++|++.+.++++     .+.+++||.+.+|+|+.|++.+.++..+.++.++
T Consensus        37 ~~~H~h~~~E~~~Vl~G~~~~~~~~~-----~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~vi~   96 (99)
T d1y9qa2          37 SSPHALGVIEYIHVLEGIMKVFFDEQ-----WHELQQGEHIRFFSDQPHGYAAVTEKAVFQNIVA   96 (99)
T ss_dssp             ECCCSTTCEEEEEEEESCEEEEETTE-----EEEECTTCEEEEECSSSEEEEESSSCEEEEEEEE
T ss_pred             cccccCCcEEEEEEEcCceEEEecce-----EEEecCCCEEEECCCCeEEEEeCCccCEEEEEEe
Confidence            45678888999999999999999988     9999999999999999999999887776555444

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.12  E-value=2e-10  Score=87.95  Aligned_cols=85  Identities=22%  Similarity=0.241  Sum_probs=66.0

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecC---cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHA---DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~---~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      .++..+.|++.+.  +.  ....-|+|.   ..|++||++|+|.+.+.+.++....+.+++||+|+||+|..|++.+.++
T Consensus        69 ~~~~~i~PG~~~~--e~--~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N~Gd  144 (190)
T d1x82a_          69 FATTVLYPGKVGK--EF--FFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGD  144 (190)
T ss_dssp             EEEEEECCCEETT--EE--CBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSS
T ss_pred             EEEEEECCCcccC--cc--ccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEECCC
Confidence            4567777765431  00  011236663   5799999999999999987767778999999999999999999999988


Q ss_pred             CcEEEEEEecCC
Q 031374          142 NYVKVMQILSYG  153 (160)
Q Consensus       142 ~~~~~ir~f~~~  153 (160)
                      ..++++.++...
T Consensus       145 e~L~~l~v~~~~  156 (190)
T d1x82a_         145 EPFIFLAIYPAD  156 (190)
T ss_dssp             SCEEEEEEEETT
T ss_pred             CCEEEEEEECCC
Confidence            999999887653

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.01  E-value=3.6e-10  Score=90.94  Aligned_cols=72  Identities=17%  Similarity=0.224  Sum_probs=61.5

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~  143 (160)
                      ...++++.|+.         .....|+|..+|++|||+|++.+.++++     .+.+++||+|.+|++++|++.+.....
T Consensus       190 ~~~i~~~~PG~---------~~~~~h~H~~ee~~~vl~G~~~~~~~~~-----~~~v~~GD~i~~~~~~ph~~~n~g~~p  255 (273)
T d1sq4a_         190 HVNIVNFEPGG---------VIPFAETHVMEHGLYVLEGKAVYRLNQD-----WVEVEAGDFMWLRAFCPQACYSGGPGR  255 (273)
T ss_dssp             EEEEEEECSSS---------EESCCCCCSEEEEEEEEECEEEEEETTE-----EEEEETTCEEEEEESCCEEEECCSSSC
T ss_pred             EEEEEEEccCC---------ccccccccccceEEEEEccEEEEEECCE-----EEEecCCCEEEECCCCCEEeEeCCCCC
Confidence            45677777652         2234799999999999999999999988     899999999999999999999998888


Q ss_pred             EEEEEE
Q 031374          144 VKVMQI  149 (160)
Q Consensus       144 ~~~ir~  149 (160)
                      ++.|-+
T Consensus       256 ~~yl~~  261 (273)
T d1sq4a_         256 FRYLLY  261 (273)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            887754

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.01  E-value=3.2e-10  Score=81.21  Aligned_cols=59  Identities=25%  Similarity=0.272  Sum_probs=48.3

Q ss_pred             eecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcc-c
Q 031374           89 HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQ-R  156 (160)
Q Consensus        89 H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~-w  156 (160)
                      |.|..+|+.||++|++.+.++++     .+.+++||.+++|+|+.|+|.+.+  ..+++  |.-.|. |
T Consensus        68 ~~~~~~E~~~vl~G~~~~~~~g~-----~~~l~~Gd~~~~p~g~~h~~~~~~--~~~~~--~v~~Pa~w  127 (128)
T d2pyta1          68 WTLNYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFGTPT--SVRFL--YVAWPANW  127 (128)
T ss_dssp             EECSSEEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCEEEEEEEE--EEEEE--EEEESTTC
T ss_pred             eeCCccEEEEEEEeEEEEEECCE-----EEEecCCCEEEECCCCEEEEEeCC--CEEEE--EEECCCCC
Confidence            34678999999999999999887     899999999999999999999854  24443  433465 6

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=4.4e-10  Score=88.85  Aligned_cols=69  Identities=22%  Similarity=0.273  Sum_probs=54.2

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC-CCc
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT-SNY  143 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~-~~~  143 (160)
                      ..++++.|+.         .....|.|..+|++||++|+|.+.++++     .+.+++||+|.+|||++|++.+.+ +..
T Consensus       173 ~~~~~~~PG~---------~~~~~h~h~~ee~~~vl~G~g~~~i~~~-----~~~~~~GD~i~~~~~~ph~~~~~g~~~~  238 (253)
T d1rc6a_         173 MHILSFAPGA---------SHGYIETHVQEHGAYILSGQGVYNLDNN-----WIPVKKGDYIFMGAYSLQAGYGVGRGEA  238 (253)
T ss_dssp             EEEEEECTTC---------CBEEEEEESSCEEEEEEESEEEEESSSC-----EEEEETTCEEEECSSEEEEEEEC----C
T ss_pred             EEEEEECCCc---------eEeEEEeCCceEEEEEeCCEEEEEECCE-----EEEecCCCEEEECCCCCEeeeeCCCCCc
Confidence            3466666642         2234688999999999999999999988     999999999999999999998765 455


Q ss_pred             EEEE
Q 031374          144 VKVM  147 (160)
Q Consensus       144 ~~~i  147 (160)
                      +..+
T Consensus       239 ~~~~  242 (253)
T d1rc6a_         239 FSYI  242 (253)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5555

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.00  E-value=9.1e-10  Score=86.93  Aligned_cols=73  Identities=19%  Similarity=0.281  Sum_probs=60.7

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccc-eecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTE-HIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~-H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      ...++++.|+.          .... |.|..+|++|||+|++.+.++++     .+.+++||+|.+|+|++|++.+..+.
T Consensus       166 ~~~~~~~~PG~----------~~~~~~~h~~ee~~~vl~G~~~~~i~~~-----~~~v~~GD~i~~~~~~~H~~~n~g~~  230 (245)
T d1sfna_         166 MVSTMSFAPGA----------SLPYAEVHYMEHGLLMLEGEGLYKLEEN-----YYPVTAGDIIWMGAHCPQWYGALGRN  230 (245)
T ss_dssp             EEEEEEECTTC----------BCSSCBCCSSCEEEEEEECEEEEEETTE-----EEEEETTCEEEECTTCCEEEEEESSS
T ss_pred             EEEEEEEccCc----------eeeceecCCceEEEEEeCCEEEEEECCE-----EEEecCCCEEEECCCCCEeeEeCCCC
Confidence            45677877753          2344 56889999999999999999988     89999999999999999999998888


Q ss_pred             cEEEEEEecC
Q 031374          143 YVKVMQILSY  152 (160)
Q Consensus       143 ~~~~ir~f~~  152 (160)
                      .++.| +|++
T Consensus       231 ~~~~l-~~k~  239 (245)
T d1sfna_         231 WSKYL-LYKD  239 (245)
T ss_dssp             CEEEE-EEEE
T ss_pred             CEEEE-EEec
Confidence            88877 4443

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.97  E-value=1.3e-09  Score=86.06  Aligned_cols=69  Identities=19%  Similarity=0.269  Sum_probs=56.6

Q ss_pred             eeeeeeeCCCcccCHHHHhcCccc-ceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC-C
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYT-EHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT-S  141 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~-~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~-~  141 (160)
                      ...++++.|+.          ... .|.|..+|++||++|++.+.++++     .+.+++||+|.+|||++|++.+.. +
T Consensus       169 ~~~~~~~~PG~----------~~~~~h~h~~ee~~~vl~G~~~~~~~~~-----~~~~~~GD~i~~~~~~pH~~~n~G~~  233 (250)
T d1sefa_         169 NMHILSFEPGA----------SHAYIETHVQEHGAYLISGQGMYNLDNE-----WYPVEKGDYIFMSAYVPQAAYAVGRE  233 (250)
T ss_dssp             EEEEEEECTTC----------BCSSCBCCSCCEEEEEEECEEEEEETTE-----EEEEETTCEEEECTTCCEEEEEECSS
T ss_pred             EEEEEEECCCC----------ccCccCccCceEEEEEeCCEEEEEECCE-----EEEecCCCEEEECCCCCEEeEcCCCC
Confidence            45677777753          233 588889999999999999999988     899999999999999999998755 5


Q ss_pred             CcEEEE
Q 031374          142 NYVKVM  147 (160)
Q Consensus       142 ~~~~~i  147 (160)
                      ..++.+
T Consensus       234 ~~~~~l  239 (250)
T d1sefa_         234 EPLMYV  239 (250)
T ss_dssp             SCEEEE
T ss_pred             CcEEEE
Confidence            556654

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.96  E-value=3.2e-09  Score=81.92  Aligned_cols=69  Identities=17%  Similarity=0.250  Sum_probs=59.3

Q ss_pred             CcccceecC-cceEEEEeeeeEEEEEecC---CCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDE---SDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~---~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      .....|+|. ..|+.||++|+++..+.+.   +++.+...+++||+++||+|..|+..+..+....++..|..
T Consensus        83 g~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~~i~~f~s  155 (201)
T d2et1a1          83 GTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNS  155 (201)
T ss_dssp             CEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEESS
T ss_pred             CCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCCCCEEEEEEecC
Confidence            457899997 5899999999999988543   56788999999999999999999999888877887777755

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.96  E-value=2.3e-09  Score=89.60  Aligned_cols=79  Identities=18%  Similarity=0.205  Sum_probs=67.9

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      +.-+++|.|+          .....|+|+ .+|+.||++|+|.+.|.+.+++...+.+++||+++||+|..|++.+.++.
T Consensus       251 s~~~~~l~PG----------~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e  320 (372)
T d1j58a_         251 ASALVTVEPG----------AMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDE  320 (372)
T ss_dssp             EEEEEEECTT----------CEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSS
T ss_pred             eEEEEEECCC----------cccCCCCCCCCcEEEEEEECeEEEEEEcCCCceEEEEecCCcEEEECCCCeEEEEECCCC
Confidence            3445666665          347899997 58999999999999998777777789999999999999999999998889


Q ss_pred             cEEEEEEecC
Q 031374          143 YVKVMQILSY  152 (160)
Q Consensus       143 ~~~~ir~f~~  152 (160)
                      .+..+-+|..
T Consensus       321 ~l~~l~vf~s  330 (372)
T d1j58a_         321 PLVFLEIFKD  330 (372)
T ss_dssp             CEEEEEEESS
T ss_pred             CEEEEEEECC
Confidence            9999988875

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=98.92  E-value=6e-09  Score=74.14  Aligned_cols=62  Identities=19%  Similarity=0.268  Sum_probs=48.4

Q ss_pred             cceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC-CCCcEEEEEE
Q 031374           87 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD-TSNYVKVMQI  149 (160)
Q Consensus        87 ~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~-~~~~~~~ir~  149 (160)
                      ..+.|..+|+.||++|+..+.+++..+ --++.+++||.|.+|++++|++.+- ......++.+
T Consensus        58 ~~~~H~~eE~~yVl~G~~~~~~g~~~~-~~~~~l~~GDsi~~~~~~pH~~~n~~g~~~a~~l~V  120 (122)
T d2bnma2          58 FNSGHAGNEFLFVLEGEIHMKWGDKEN-PKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAV  120 (122)
T ss_dssp             CCCCCSSCEEEEEEESCEEEEESCTTS-CEEEEECTTCEEEECTTCCEEEEESTTSCCEEEEEE
T ss_pred             cCCCcccEEEEEEEEEEEEEEEecccC-CEEEEEccCcEEEeCCCCCEEEEcCCCCccEEEEEE
Confidence            456688999999999999999974321 1168899999999999999999874 4555555543

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=98.89  E-value=9.6e-09  Score=77.31  Aligned_cols=76  Identities=12%  Similarity=0.242  Sum_probs=61.6

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecC-cceEEEEeeeeEEEEEecCCC-cEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESD-QWIRIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~-~~~~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      ...+++.|.          .....|+|. ..|+.||++|++++.+-+.++ +.+...+++||+++||+|..|+..++.+ 
T Consensus        44 ~~~~~l~pg----------a~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gdv~vvP~G~~h~~~n~~~-  112 (174)
T d1fxza2          44 AEFGSLRKN----------AMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSD-  112 (174)
T ss_dssp             EEEEEECTT----------CEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECST-
T ss_pred             EEEeeecCC----------CEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCcEEEECCCCEEEEEeCCC-
Confidence            445666665          457899996 689999999999999987654 6888899999999999999999888654 


Q ss_pred             cEEEEEEec
Q 031374          143 YVKVMQILS  151 (160)
Q Consensus       143 ~~~~ir~f~  151 (160)
                      .+.++.++.
T Consensus       113 ~~~~v~~~~  121 (174)
T d1fxza2         113 NFEYVSFKT  121 (174)
T ss_dssp             TEEEEEEES
T ss_pred             CeEEEEEEc
Confidence            566666664

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.86  E-value=3.3e-09  Score=86.28  Aligned_cols=63  Identities=30%  Similarity=0.560  Sum_probs=54.8

Q ss_pred             CcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      .....|+|. .+|++||++|++.+.++++     .+.+++||+++||+|+.|+|.+.+. ..+++-+|..
T Consensus       225 ~~~~~H~H~~~~e~~~vl~G~~~~~v~~~-----~~~~~~Gd~~~vP~g~~H~~~~~~~-~~~~l~~~~p  288 (330)
T d1y3ta1         225 DRIVDHYHEYHTETFYCLEGQMTMWTDGQ-----EIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVP  288 (330)
T ss_dssp             CCCCCEECSSCEEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEES
T ss_pred             CccCccCcCCccEEEEEEecEEEEEECCE-----EEEeCCCCEEEECcCCcEEeEeCCC-CeEEEEEECC
Confidence            446789997 5899999999999999988     8999999999999999999998764 6777777654

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=98.86  E-value=8.6e-09  Score=77.62  Aligned_cols=101  Identities=15%  Similarity=0.164  Sum_probs=74.8

Q ss_pred             CcEEEecCCCCCCChHHHHHHHHhcCCceeeeeeeCCCcccCHHHHhcCcccceecC-cceEEEEeeeeEEEEEecCCC-
Q 031374           36 GVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDESD-  113 (160)
Q Consensus        36 GV~~w~~~~~~~~~~~~l~~l~~~~gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~-  113 (160)
                      |=+.+.++..+.+   -|+.+    |. +...+.|.|..          ....|+|. .+|+.||++|++.+.+-+.++ 
T Consensus        28 gG~i~~~~~~~fP---~L~~l----gl-s~~~v~L~pga----------~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~   89 (173)
T d1od5a2          28 AGRISTLNSLTLP---ALRQF----GL-SAQYVVLYRNG----------IYSPHWNLNANSVIYVTRGKGRVRVVNCQGN   89 (173)
T ss_dssp             TEEEEEESTTTCT---THHHH----TC-EEEEEEECTTC----------EEEEEEESSCCEEEEEEEEEEEEEEECTTSC
T ss_pred             CeEEEEecHHHhh---hhhhc----cc-eEEEEEEcCCc----------EecCccCCCCcEEEEEEecceEEEEEeCCCc
Confidence            4445566655543   23333    33 45677777764          47899996 589999999999999987655 


Q ss_pred             cEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCcc
Q 031374          114 QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGVQ  155 (160)
Q Consensus       114 ~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p~  155 (160)
                      +.+...+++||+++||+|..|+-.++. +.+..+-+|...|.
T Consensus        90 ~~~~~~l~~Gdv~~iP~G~~h~~~n~~-~~~~~v~~~~~~~~  130 (173)
T d1od5a2          90 AVFDGELRRGQLLVVPQNFVVAEQGGE-QGLEYVVFKTHHNA  130 (173)
T ss_dssp             EEEEEEEETTCEEEECTTCEEEEEEEE-EEEEEEEEESSTTC
T ss_pred             eEEeEEecCCcEEEECCCCEEEEEcCC-CceEEEEeecCCch
Confidence            578889999999999999999876654 45777777776654

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=5.9e-09  Score=75.95  Aligned_cols=66  Identities=11%  Similarity=0.150  Sum_probs=52.3

Q ss_pred             cceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC-CcEEEE-EEecCCcccC
Q 031374           87 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS-NYVKVM-QILSYGVQRQ  157 (160)
Q Consensus        87 ~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~-~~~~~i-r~f~~~p~w~  157 (160)
                      ..|-|.+.++.||++|+|.|.++++     .+.+++||++++|||..|.+...++ +..... .-|.+++.|.
T Consensus        32 Rp~g~~~Y~l~yv~~G~G~~~i~~~-----~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl~F~~~~~~~   99 (161)
T d2arca_          32 RPLGMKGYILNLTIRGQGVVKNQGR-----EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWH   99 (161)
T ss_dssp             ETTCCSSEEEEEEEEECEEEEETTE-----EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEECCCGGGG
T ss_pred             CCCCCCCEEEEEEEEeEEEEEECCE-----EEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEEEEeCcchhh
Confidence            4577889999999999999999998     9999999999999999999865443 333332 2366666553

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=98.83  E-value=8.7e-09  Score=77.76  Aligned_cols=76  Identities=16%  Similarity=0.194  Sum_probs=58.5

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeee-CCCCc
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL-DTSNY  143 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~-~~~~~  143 (160)
                      .-.+++.|..          ++..|+...+|+.||++|+|.+.+-.. +...+..+++||+++||+|..|+..+ +++..
T Consensus        43 v~~~~i~p~~----------l~~Ph~~~a~ev~yV~~G~g~v~~v~~-~~~~~~~l~~GDv~~iP~G~~h~~~N~~~~e~  111 (178)
T d1dgwa_          43 VLEYCSKPNT----------LLLPHHSDSDLLVLVLEGQAILVLVNP-DGRDTYKLDQGDAIKIQAGTPFYLINPDNNQN  111 (178)
T ss_dssp             EEEEEECTTE----------EEEEEEESSEEEEEEEESEEEEEEEET-TEEEEEEEETTEEEEECTTCCEEEEECCSSSC
T ss_pred             EEEEEecCCc----------ccccccCCCCEEEEEEEeEEEEEEecC-CceEEEEecCCCEEEECCCCeEEEEECCCCCC
Confidence            3445666653          466774457899999999999999765 34468899999999999999999886 45567


Q ss_pred             EEEEEEec
Q 031374          144 VKVMQILS  151 (160)
Q Consensus       144 ~~~ir~f~  151 (160)
                      +.++.++.
T Consensus       112 l~i~~~~~  119 (178)
T d1dgwa_         112 LRILKFAI  119 (178)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            77776653

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.82  E-value=9.8e-09  Score=79.18  Aligned_cols=77  Identities=14%  Similarity=0.266  Sum_probs=58.7

Q ss_pred             CCceeeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC
Q 031374           61 GYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT  140 (160)
Q Consensus        61 gy~~~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~  140 (160)
                      +|. .-.+++.|.+          ++..|++..+|+.||++|+|.+.+-..++ -..+.+++||+++||+|..||..+..
T Consensus        39 ~~~-v~~~~i~p~~----------l~~Ph~~~a~ev~yV~~G~g~~~~v~~~~-~~~~~l~~GDv~~iP~G~~~~~~N~~  106 (203)
T d1uika1          39 DYR-ILEFNSKPNT----------LLLPHHADADYLIVILNGTAILTLVNNDD-RDSYNLQSGDALRVPAGTTYYVVNPD  106 (203)
T ss_dssp             TCE-EEEEEECSSE----------EEEEEEESEEEEEEEEESEEEEEEECSSC-EEEEEEETTEEEEECTTCEEEEEECC
T ss_pred             ceE-EEEEEecCCC----------ccccccCCCcEEEEEEEEEEEEEEEeCCC-eEEEEecCCCEEEECCCCeEEEEECC
Confidence            443 3467777754          45677667899999999999999986544 44889999999999999999988754


Q ss_pred             -CCcEEEEEE
Q 031374          141 -SNYVKVMQI  149 (160)
Q Consensus       141 -~~~~~~ir~  149 (160)
                       +..+.++.|
T Consensus       107 ~~e~l~iv~~  116 (203)
T d1uika1         107 NDENLRMITL  116 (203)
T ss_dssp             SSCCEEEEEE
T ss_pred             CCccEEEEEE
Confidence             455655544

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=2.8e-09  Score=86.25  Aligned_cols=62  Identities=27%  Similarity=0.412  Sum_probs=54.4

Q ss_pred             CcccceecCcceEEEEeeeeEEEE-EecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFD-VRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~-i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      .....|.|..+|++||++|+|.+. ++++     ++.+++||++++|+|+.|.+.+.++..+..+.++
T Consensus        65 ~~~~~H~H~~~e~~~vl~G~g~~t~~~~~-----~~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~~~  127 (308)
T d2d40a1          65 EVAPSHRHNQSALRFIVEGKGAFTAVDGE-----RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGL  127 (308)
T ss_dssp             CEEEEEEESSCEEEEEEECSSCEEEETTE-----EEECCTTCEEEECTTSCEEEECCSSSCEEEEEEE
T ss_pred             CccccccCchhheEEEEEeeEEEEEecCE-----EEEecCCCEEEeCCCceEEeEECCCCCEEEEEEe
Confidence            447899999999999999999885 5655     7999999999999999999999888888877765

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.76  E-value=1.1e-08  Score=84.60  Aligned_cols=63  Identities=25%  Similarity=0.485  Sum_probs=54.3

Q ss_pred             cCcccceecCcceEEEEeeeeEEEEE-ecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYFDV-RDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f~i-~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      +.....|.|...+++||++|+|.|.+ +++     ++.+++||++++|+|+.|.+.+.++.....+.++
T Consensus        97 Ge~~~~H~H~~~~~~~vi~G~g~~t~v~g~-----~~~~~~GD~~~~P~~~~H~~~n~~d~~~~~l~~~  160 (351)
T d2phda1          97 RETAPEHRHSQNAFRFVVEGEGVWTVVNGD-----PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGL  160 (351)
T ss_dssp             TCEEEEEEESSCEEEEEEECEEEEEEETTE-----EEEEETTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             CCcCCccccccceeEEEEECCcEEEEECCE-----EEEEeCCCEEEeCCCceEEEEEcCCCCEEEEEee
Confidence            45688999999999999999998765 655     8999999999999999999998877777666554

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=1.5e-08  Score=82.35  Aligned_cols=62  Identities=21%  Similarity=0.373  Sum_probs=53.4

Q ss_pred             cccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           85 FYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        85 ~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ....|.|. .+|++||++|++.+.++++     ++.+++||++.+|+|+.|+|.+.++ ....+.++..
T Consensus        54 ~~~~h~H~~~~e~~~vl~G~~~~~~~~~-----~~~l~~Gd~~~~p~~~~H~~~n~~~-~~~~l~~~~p  116 (330)
T d1y3ta1          54 AFPLHVHKDTHEGILVLDGKLELTLDGE-----RYLLISGDYANIPAGTPHSYRMQSH-RTRLVSYTMK  116 (330)
T ss_dssp             EEEEEECTTCCEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECST-TEEEEEEEET
T ss_pred             cCCcccCCCceEEEEEeCCEEEEEECCE-----EEEEcCCCEEEeCCCCeEEEEEcCC-CeEEEEEECC
Confidence            35789996 6899999999999999988     8999999999999999999998765 5566666654

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.74  E-value=9.1e-09  Score=85.37  Aligned_cols=67  Identities=18%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             cCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecCCc
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSYGV  154 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~~p  154 (160)
                      +.....|.|...+++||++|+|++.|+++     ++.+++||+++||++..|++.+.+......+-.|++.|
T Consensus       266 G~~~~~hrH~~~~v~~v~~G~g~~~i~g~-----~~~~~~GDv~~vP~~~~h~~~N~s~~e~~~Lf~~~D~P  332 (355)
T d3bu7a1         266 GEHTKAHRHTGNVIYNVAKGQGYSIVGGK-----RFDWSEHDIFCVPAWTWHEHCNTQERDDACLFSFNDFP  332 (355)
T ss_dssp             TCBCCCEEESSCEEEEEEECCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECCSSCCEEEEEEESHH
T ss_pred             CCccCCcCccCcEEEEEEECcEEEEECCE-----EEEeeCCCEEEeCCCCcEEeecCCCCCcEEEEEecChH
Confidence            34567899999999999999999999988     99999999999999999999876654444444456655

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.74  E-value=1.7e-08  Score=82.91  Aligned_cols=65  Identities=20%  Similarity=0.298  Sum_probs=52.8

Q ss_pred             cceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           87 TEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        87 ~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      ..|+|. .+|++||++|++.+.+.+.++.--.+.+++||++++|+|+.|+|.+.+. ..++|-++..
T Consensus        62 ~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~l~~GD~~~~P~g~~H~~~n~~~-~~~~l~v~~p  127 (348)
T d1juha_          62 LPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDP-DTEMTGVIVP  127 (348)
T ss_dssp             CCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECST-TEEEEEEEES
T ss_pred             CccccccceEEEEEEeeEEEEEEeccCCceEEEEeCCCCEEEECCCCeEeeEeCCC-CcEEEEEECC
Confidence            579997 6799999999999999764333337889999999999999999998764 5677666654

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.73  E-value=1.4e-08  Score=84.79  Aligned_cols=68  Identities=21%  Similarity=0.281  Sum_probs=58.1

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEecC
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILSY  152 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~~  152 (160)
                      .+...|+|...|+.||++|++.+.+-+.+++.+...+++||++++|+|+.|+..+.+ +.+..+-+|..
T Consensus        83 a~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~~H~i~n~~-dg~e~l~vf~~  150 (372)
T d1j58a_          83 AIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALE-EGAEFLLVFDD  150 (372)
T ss_dssp             CEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEE-EEEEEEEEESC
T ss_pred             cCcCCcccCcccEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEECCCCEEEEEeCC-CCcEEEEEECC
Confidence            467899999889999999999999987777777778999999999999999988764 35666666654

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.73  E-value=1.1e-08  Score=80.70  Aligned_cols=58  Identities=10%  Similarity=0.043  Sum_probs=50.5

Q ss_pred             cceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           87 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        87 ~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      ..|.|..+|++||++|++.+.++++     .+.+++||.+.+|+|+.|.+.+.++..++.+.+
T Consensus        64 ~~~~~~~Ee~~yVl~G~~~~~~~~~-----~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v  121 (250)
T d1sefa_          64 GFGGDGIQTLVYVIDGRLRVSDGQE-----THELEAGGYAYFTPEMKMYLANAQEADTEVFLY  121 (250)
T ss_dssp             CSSBTTEEEEEEEEESEEEEECSSC-----EEEEETTEEEEECTTSCCEEEESSSSCEEEEEE
T ss_pred             CCCCCCcEEEEEEEeeEEEEEECCE-----EEEEcCCCEEEEcCCCcEEEEECCCCCEEEEEE
Confidence            3445567899999999999999988     899999999999999999999888777776655

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=98.73  E-value=2.3e-08  Score=74.95  Aligned_cols=64  Identities=16%  Similarity=0.240  Sum_probs=50.6

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC-CCcEEEEEE
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT-SNYVKVMQI  149 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~-~~~~~~ir~  149 (160)
                      ++..|++..+|+.||++|+|.+.+-..++ ..++.+++||+++||+|..|+..+.. +..+.++.+
T Consensus        56 ~~~Ph~~~a~ei~yV~~G~g~v~~v~~~~-~~~~~l~~GDv~~vP~G~~h~~~n~~~~~~l~iv~~  120 (170)
T d1uija1          56 ILLPHHADADFLLFVLSGRAILTLVNNDD-RDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWL  120 (170)
T ss_dssp             EEEEEEESEEEEEEEEESCEEEEEECSSC-EEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEE
T ss_pred             ccccccCCCCEEEEEEEEEEEEEEEeCCC-cEEEEecCCcEEEECCCCeEEEEEcCCCCcEEEEEe
Confidence            45677567899999999999999975543 34788999999999999999998754 445555443

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.70  E-value=5.2e-08  Score=73.73  Aligned_cols=76  Identities=14%  Similarity=0.220  Sum_probs=59.4

Q ss_pred             eeeeeeeCCCcccCHHHHhcCcccceecC-cceEEEEeeeeEEEEEecCC--------------CcEEEEEEcCCcEEEe
Q 031374           64 YMDLLDLCPEKVTNYEEKLKNFYTEHIHA-DEEIRYCLEGSGYFDVRDES--------------DQWIRIWIKAGDLIVL  128 (160)
Q Consensus        64 ~~dvi~v~~~~~p~~~~~~~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~--------------~~~~~~~v~~GDli~i  128 (160)
                      ..-.+++.|..          ++..|+|+ ..|+.||++|+|.+.+-+.+              .+.++..+++||+++|
T Consensus        43 ~~~~~~l~p~~----------~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~GDv~vi  112 (185)
T d1uika2          43 FLSVVDMNEGA----------LFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVI  112 (185)
T ss_dssp             EEEEEEECTTE----------EEEEEEESSCEEEEEEEESCEEEEEEEC------------CBCCEEEEEEECTTCEEEE
T ss_pred             hhheeecCCCc----------eeeeeecCCCCEEEEEEeeEEEEEEEccCccchhhccccccCcceeEEEEecCCcEEEE
Confidence            34567777754          46789996 57999999999999997543              2578899999999999


Q ss_pred             CCCCeeeeeeCCCCcEEEEEE
Q 031374          129 PAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus       129 P~g~~H~f~~~~~~~~~~ir~  149 (160)
                      |+|..|+..++.+..+.++-+
T Consensus       113 P~G~~~~~~n~~d~~~v~~~~  133 (185)
T d1uika2         113 PAGYPVVVNATSDLNFFAFGI  133 (185)
T ss_dssp             CTTCCEEEEESSSEEEEEEEE
T ss_pred             CCCCEEEEEcCCCccEEEEEE
Confidence            999999999877655544433

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.62  E-value=7e-08  Score=71.74  Aligned_cols=64  Identities=14%  Similarity=0.155  Sum_probs=52.5

Q ss_pred             CcccceecC-cceEEEEeeeeEEEEEecCCC-------cEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEE
Q 031374           84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDESD-------QWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVM  147 (160)
Q Consensus        84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~-------~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~i  147 (160)
                      ..+..|+|+ ..|+.||++|+|.+.+-+.++       +.+...+++||+++||+|..|+..++++..+.++
T Consensus        31 ~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~~~~~v~~  102 (162)
T d2phla2          31 ALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTGF  102 (162)
T ss_dssp             EEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSSEEEEEE
T ss_pred             cEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEEEeCCCceEEEE
Confidence            457889998 489999999999999975432       3788899999999999999999998765444443

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=2.4e-08  Score=80.62  Aligned_cols=54  Identities=22%  Similarity=0.189  Sum_probs=49.2

Q ss_pred             cCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      +.....|.|...|++||++|+|++.|+++     ++.+++||++++|+|..|++.++++
T Consensus       232 G~~~~~h~h~~~~~~~v~~G~g~~~v~~~-----~~~~~~GD~~~vP~~~~h~~~~~~d  285 (308)
T d2d40a1         232 GFASRVARTTDSTIYHVVEGSGQVIIGNE-----TFSFSAKDIFVVPTWHGVSFQTTQD  285 (308)
T ss_dssp             TCBCCCBEESSCEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCCEEEEEEEE
T ss_pred             CCccCCccCChheEEEEEeCcEEEEECCE-----EEEEeCCCEEEeCCCCeEEEEcCCC
Confidence            35568899999999999999999999988     9999999999999999999988664

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.59  E-value=3.5e-08  Score=81.80  Aligned_cols=58  Identities=24%  Similarity=0.463  Sum_probs=49.2

Q ss_pred             cCcccceecCcceEEEEeeeeEEEE-EecCCCcEEEEEEcCCcEEEeCCCCeeeeeeC-CCCcEE
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYFD-VRDESDQWIRIWIKAGDLIVLPAGIYHRFTLD-TSNYVK  145 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f~-i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~-~~~~~~  145 (160)
                      +...+.|.|...+++||++|+|.+. |+++     ++.+++||++++|+|+.|.+.+. ++..+.
T Consensus        95 Ge~~~~HrH~~~~~~~vi~G~g~~t~v~ge-----~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~  154 (355)
T d3bu7a1          95 GERAGAHRHAASALRFIMEGSGAYTIVDGH-----KVELGANDFVLTPNGTWHEHGILESGTECI  154 (355)
T ss_dssp             TCBCCCEEESSCEEEEEEECSCEEEEETTE-----EEEECTTCEEEECTTCCEEEEECTTCCCEE
T ss_pred             CCcCcccccccceeEEEEECCcEEEEECCE-----EEEeeCCCEEEeCCCceEeeecCCCCCcEE
Confidence            4567899999999999999999875 6666     89999999999999999999874 444443

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=6.6e-08  Score=76.03  Aligned_cols=58  Identities=12%  Similarity=0.142  Sum_probs=51.1

Q ss_pred             cceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           87 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        87 ~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      ..|.|..+|++||++|++.+.++++     .+.+++||++.+|+|+.|++.+.++..++++.+
T Consensus        67 ~~h~~~~Ee~~~Vl~G~~~~~~~~~-----~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v  124 (253)
T d1rc6a_          67 GFGGEGIETFLYVISGNITAKAEGK-----TFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLY  124 (253)
T ss_dssp             CSCCTTEEEEEEEEESEEEEEETTE-----EEEEETTEEEEECTTCCCEEEECSSSCEEEEEE
T ss_pred             cccCCCcEEEEEEEECEEEEEECCE-----EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            3455567899999999999999988     899999999999999999999888877777755

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.55  E-value=2.2e-07  Score=71.11  Aligned_cols=76  Identities=16%  Similarity=0.123  Sum_probs=57.2

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEE-----EEEcCCcEEEeCCCCeeeeee-
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIR-----IWIKAGDLIVLPAGIYHRFTL-  138 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~-----~~v~~GDli~iP~g~~H~f~~-  138 (160)
                      .-++++.|.+          ++-.|+....+|.||++|+|.+.+-..+++--.     -.+++||+++||+|..||..+ 
T Consensus        44 v~~~~i~P~~----------l~lP~~~nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~  113 (200)
T d2phla1          44 LVEFRSKPET----------LLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNP  113 (200)
T ss_dssp             EEEEEECSSE----------EEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEEC
T ss_pred             EEEEEecCCc----------eeeeecCCCCEEEEEEeeeEEEEEEECCCCceeehhhccCccCCCEEEECCCCeEEEEEC
Confidence            3456677654          456666668999999999999999876654211     148999999999999999986 


Q ss_pred             CCCCcEEEEEEe
Q 031374          139 DTSNYVKVMQIL  150 (160)
Q Consensus       139 ~~~~~~~~ir~f  150 (160)
                      +++..+.++.|+
T Consensus       114 ~~~~~l~~~~l~  125 (200)
T d2phla1         114 DPKEDLRIIQLA  125 (200)
T ss_dssp             CSSCCEEEEEEE
T ss_pred             CCCCCEEEEEEe
Confidence            445678777664

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.53  E-value=9.8e-08  Score=76.36  Aligned_cols=58  Identities=16%  Similarity=0.230  Sum_probs=49.5

Q ss_pred             cceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEE
Q 031374           87 TEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        87 ~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      +.|.|..+|++||++|++.+.++++     ...+++||.+.+|+|+.|++.+.++...+.+-+
T Consensus        82 p~~~~~~Ee~~yVl~G~~~l~~~g~-----~~~L~~Gd~~y~P~g~~h~~~N~g~~~a~~l~i  139 (273)
T d1sq4a_          82 PEQDPNAEAVLFVVEGELSLTLQGQ-----VHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWI  139 (273)
T ss_dssp             CCCCTTEEEEEEEEESCEEEEESSC-----EEEECTTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             CCCCCCcEEEEEEEeCEEEEEECCE-----EEEecCCCEEEECCCCcEeeeecCCCCEEEEEE
Confidence            3444557899999999999999988     999999999999999999999877767665543

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.52  E-value=8e-08  Score=75.48  Aligned_cols=68  Identities=21%  Similarity=0.203  Sum_probs=57.3

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcE
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYV  144 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~  144 (160)
                      +=++++.|+.            ..|.|..+|+.||++|++.+.++++     ...+++||++.+|+|+.|.+.+.++..+
T Consensus        52 ~~~v~~~pGg------------~~~~~~~E~~~~Vl~G~~~~~~~g~-----~~~l~~G~~~~~P~g~~h~~~n~~~~~~  114 (245)
T d1sfna_          52 QFTAEMPAGA------------QATESVYQRFAFVLSGEVDVAVGGE-----TRTLREYDYVYLPAGEKHMLTAKTDARV  114 (245)
T ss_dssp             EEEEEECTTC------------EEECCSSEEEEEEEEEEEEEECSSC-----EEEECTTEEEEECTTCCCEEEEEEEEEE
T ss_pred             EEEEEECCCC------------CCCCCCccEEEEEEECEEEEEECCE-----EEEecCCCEEEeCCCCcEEEEeCCCccE
Confidence            4477777653            2467788999999999999999988     9999999999999999999998777777


Q ss_pred             EEEEE
Q 031374          145 KVMQI  149 (160)
Q Consensus       145 ~~ir~  149 (160)
                      ..++.
T Consensus       115 ~~~~~  119 (245)
T d1sfna_         115 SVFEK  119 (245)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76654

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.50  E-value=1.2e-07  Score=78.21  Aligned_cols=54  Identities=17%  Similarity=0.254  Sum_probs=49.2

Q ss_pred             cCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           83 KNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        83 ~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      +.....|.|...+++||++|+|+..|+++     ++..++||+++||++..|++.++++
T Consensus       273 G~~~~~hrh~~~~v~~vi~G~g~~~i~~~-----~~~~~~gDvf~vP~~~~h~~~n~~~  326 (351)
T d2phda1         273 GTETATRNEVGSTVFQVFEGAGAVVMNGE-----TTKLEKGDMFVVPSWVPWSLQAETQ  326 (351)
T ss_dssp             TCBCCCEEESSCEEEEEEESCEEEEETTE-----EEEECTTCEEEECTTCCEEEEESSC
T ss_pred             CCcCCCccccCcEEEEEEeCcEEEEECCE-----EEEEcCCCEEEeCCCCcEEEecCCC
Confidence            34467899999999999999999999988     9999999999999999999998664

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.44  E-value=3.5e-07  Score=74.81  Aligned_cols=60  Identities=15%  Similarity=0.234  Sum_probs=47.7

Q ss_pred             ccceec-CcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEe
Q 031374           86 YTEHIH-ADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQIL  150 (160)
Q Consensus        86 ~~~H~H-~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f  150 (160)
                      ...|+| ..+|++||++|++.+.+.+..    .+.+++||+++||+|+.|.+.+.+. +.+++-+.
T Consensus       262 ~~~~~~~~~~e~~~vleG~~~~~i~~~~----~~~l~~GD~~~vP~g~~h~~~~~~~-~~~~~~~~  322 (348)
T d1juha_         262 TVPTWSFPGACAFQVQEGRVVVQIGDYA----ATELGSGDVAFIPGGVEFKYYSEAY-FSKVLFVS  322 (348)
T ss_dssp             CCCCBCCSSCEEEEEEESCEEEEETTSC----CEEECTTCEEEECTTCCEEEEESSS-SEEEEEEE
T ss_pred             CCCcccCCCCEEEEEEeceEEEEeCCcc----eEEecCCCEEEECCCCcEEEEeCCC-CcEEEEEE
Confidence            445655 579999999999999996542    5889999999999999999987765 44555443

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=98.36  E-value=6.5e-07  Score=70.47  Aligned_cols=66  Identities=18%  Similarity=0.263  Sum_probs=54.1

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecC----------------------CCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDE----------------------SDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~----------------------~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      ++-.|......+.||++|+|.+.+--.                      +..-....+++||+|.||||+.||..++.+.
T Consensus        51 L~lP~y~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~~~~~d~~qk~~~lr~GDVi~iPAG~~~w~~N~gn~  130 (239)
T d1fxza1          51 LRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDT  130 (239)
T ss_dssp             EEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTTEEEEECTTCEEEEEECSSS
T ss_pred             eecceecCCCeEEEEEeCEEEEEEecCCChhhhcccccccccccccccchhhhhhhccccCCEEEecCCceEEEEeCCCC
Confidence            456666778999999999999999621                      2223357999999999999999999999988


Q ss_pred             cEEEEEEe
Q 031374          143 YVKVMQIL  150 (160)
Q Consensus       143 ~~~~ir~f  150 (160)
                      .+.++.++
T Consensus       131 ~Lv~v~~~  138 (239)
T d1fxza1         131 PVVAVSII  138 (239)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEEe
Confidence            98888865

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=98.29  E-value=1.4e-06  Score=68.79  Aligned_cols=67  Identities=13%  Similarity=0.150  Sum_probs=53.8

Q ss_pred             cccceecCcceEEEEeeeeEEEEEecCCC-------------------------cEEEEEEcCCcEEEeCCCCeeeeeeC
Q 031374           85 FYTEHIHADEEIRYCLEGSGYFDVRDESD-------------------------QWIRIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus        85 ~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~-------------------------~~~~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      ++-.|......+.||++|+|.+.+--.+.                         ......++.||+|.||||+.||..++
T Consensus        51 L~lP~ys~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~~~~~~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNd  130 (245)
T d1od5a1          51 LHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNT  130 (245)
T ss_dssp             EEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC---------------EEESCEEEEETTEEEEECTTCCEEEEEC
T ss_pred             cccccccCCCeEEEEEeCEEEEEEEeCCChhhhcchhhcccccccccccccccceeeeecccCCCEEEECCCceEEEEeC
Confidence            45667677899999999999999973210                         12345699999999999999999999


Q ss_pred             CCCcEEEEEEec
Q 031374          140 TSNYVKVMQILS  151 (160)
Q Consensus       140 ~~~~~~~ir~f~  151 (160)
                      .+..+.++-++-
T Consensus       131 gn~~Lv~v~~~d  142 (245)
T d1od5a1         131 GDEPVVAISLLD  142 (245)
T ss_dssp             SSSCEEEEEEEC
T ss_pred             CCCcEEEEEEEc
Confidence            999988887653

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=97.85  E-value=3.5e-05  Score=54.84  Aligned_cols=61  Identities=16%  Similarity=0.095  Sum_probs=50.1

Q ss_pred             cCcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCc
Q 031374           83 KNFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        83 ~~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~  143 (160)
                      +..-..|.|. ..++++|++|+..+.+.+...+...+..++++.|.||||+.|.|..-+++.
T Consensus        42 g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l~IPpg~~h~~~~l~~~s  103 (135)
T d2pa7a1          42 EEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSDC  103 (135)
T ss_dssp             SCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTTC
T ss_pred             CcEEeeeccccccEEEEecccEEEEEEEeccccceeecccCCceeeeCCCEeeeEEecCCCc
Confidence            4566899995 789999999999999987655555566688999999999999999655553

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=97.79  E-value=6.1e-05  Score=56.13  Aligned_cols=52  Identities=27%  Similarity=0.369  Sum_probs=46.9

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL  138 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~  138 (160)
                      -..|..+.+|++|-++|.....|-+ +++.-.+.+++||+.++||+++|+-.-
T Consensus        48 ~DyH~~~~eE~FyQlkG~m~Lkv~e-~g~~~di~I~EGe~fLLP~~vpHSPqR   99 (174)
T d1yfua1          48 TDYHDDPLEEFFYQLRGNAYLNLWV-DGRRERADLKEGDIFLLPPHVRHSPQR   99 (174)
T ss_dssp             CCEEECSSCEEEEEEESCEEEEEEE-TTEEEEEEECTTCEEEECTTCCEEEEB
T ss_pred             CccccCcchhheeeeccceEEEEEe-CCceEEEEcCCCcEEEeCCCCCCCccc
Confidence            4679999999999999999999984 677889999999999999999998754

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.70  E-value=7.2e-05  Score=49.88  Aligned_cols=43  Identities=30%  Similarity=0.506  Sum_probs=34.7

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeee
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFT  137 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~  137 (160)
                      .+.+|+.|||+|++.+...+.+    .+.++|||++++|+|..=..+
T Consensus        34 y~~~E~~~ileG~v~i~~~~G~----~~~~~aGD~~~~p~G~~~~W~   76 (88)
T d1o5ua_          34 YDTNETCYILEGKVEVTTEDGK----KYVIEKGDLVTFPKGLRCRWK   76 (88)
T ss_dssp             CSSCEEEEEEEEEEEEEETTCC----EEEEETTCEEEECTTCEEEEE
T ss_pred             cCccEEEEEEEeEEEEEcCCCC----EEEEeCCCEEEECCCCEEEEE
Confidence            3578999999999999774322    678999999999999874444

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=0.00013  Score=54.28  Aligned_cols=56  Identities=30%  Similarity=0.367  Sum_probs=47.9

Q ss_pred             ccceecCcceEEEEeeeeEEEEEecC---CCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           86 YTEHIHADEEIRYCLEGSGYFDVRDE---SDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        86 ~~~H~H~~~Ei~yvl~G~g~f~i~~~---~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      -..|.-+.+|++|-++|.....|-+.   .++...+.+++||+.++||+++|+-.-.++
T Consensus        46 ~DyH~~~~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~~~  104 (175)
T d1zvfa1          46 TDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFAD  104 (175)
T ss_dssp             SCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTT
T ss_pred             cccccCcchhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCCCC
Confidence            36788899999999999999988643   257789999999999999999999766544

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00041  Score=58.25  Aligned_cols=56  Identities=5%  Similarity=0.121  Sum_probs=48.3

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      .+.||++|+.+|+|.+.-.-.     .+.+++||+++||.|+.++....+.....++-.+.
T Consensus       149 ADGDeLi~~~~Gsg~l~TefG-----~L~v~pGDyvVIPRG~~frv~~~~~~r~yiiE~~g  204 (439)
T d1eyba_         149 SDGDFLIVPQKGNLLIYTEFG-----KMLVQPNEICVIQRGMRFSIDVFEETRGYILEVYG  204 (439)
T ss_dssp             SSEEEEEEEEESCEEEEETTE-----EEEECTTEEEEECTTCCEEEECSSSEEEEEEEEES
T ss_pred             CCCCEEEEEEeCcEEEEEeee-----EEEecCCcEEEecCceEEEEecCCCceEEEEeecC
Confidence            357999999999999999866     99999999999999999999987766666666554

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=97.15  E-value=0.00014  Score=52.15  Aligned_cols=61  Identities=13%  Similarity=0.013  Sum_probs=44.5

Q ss_pred             eeeeeeCCCcccCHHHHhcCcccceecCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeee
Q 031374           65 MDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTL  138 (160)
Q Consensus        65 ~dvi~v~~~~~p~~~~~~~~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~  138 (160)
                      .-++.+.++          ..++.|.|...|..|||+|+..+...+...   --.+.+|+++..|||..|....
T Consensus        45 ~~l~r~~~G----------~~~p~H~H~~~e~~~VL~G~l~~~~g~~~~---g~~~~~g~y~~~Pag~~H~~~~  105 (144)
T d2o1qa1          45 TAIFDCPAG----------SSFAAHVHVGPGEYFLTKGKMDVRGGKAAG---GDTAIAPGYGYESANARHDKTE  105 (144)
T ss_dssp             EEEEEECTT----------EEECCEEESSCEEEEEEEEEEEETTCGGGT---SEEEESSEEEEECTTCEESCCE
T ss_pred             EEEEEeCCC----------cCcCCCccccCEEEEEEEEEEEecCCCcCC---CceEeCCceeEcCCCCeEcccc
Confidence            455666654          346889999999999999998775432211   1356699999999999997543

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.37  E-value=0.006  Score=44.85  Aligned_cols=60  Identities=13%  Similarity=0.166  Sum_probs=46.3

Q ss_pred             cCcccceecC----cceEEEEeeeeEEEEEecC------CCcEEEEEEcC--CcEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIHA----DEEIRYCLEGSGYFDVRDE------SDQWIRIWIKA--GDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H~----~~Ei~yvl~G~g~f~i~~~------~~~~~~~~v~~--GDli~iP~g~~H~f~~~~~~  142 (160)
                      +.+...|.|.    ...+.+|++|+...-+-+.      =++|..+.+.+  +..|.||+|..|.|.+-+++
T Consensus        55 gvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~  126 (176)
T d1wlta1          55 GVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDS  126 (176)
T ss_dssp             TBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSE
T ss_pred             heeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeecccc
Confidence            5667888873    4569999999998776543      15688888864  55999999999999887653

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=96.10  E-value=0.019  Score=43.83  Aligned_cols=57  Identities=16%  Similarity=0.367  Sum_probs=43.6

Q ss_pred             CcccceecCcceEEEEeeeeEEEEEecCC----------------------------------CcEEEEEEcCCcEEEeC
Q 031374           84 NFYTEHIHADEEIRYCLEGSGYFDVRDES----------------------------------DQWIRIWIKAGDLIVLP  129 (160)
Q Consensus        84 ~~~~~H~H~~~Ei~yvl~G~g~f~i~~~~----------------------------------~~~~~~~v~~GDli~iP  129 (160)
                      ..+..|+...+=+...+.|+=.+.+-...                                  ...+.+.++|||+|.||
T Consensus       133 ~~~~~H~D~~d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGDvLYiP  212 (319)
T d1vrba1         133 GGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLP  212 (319)
T ss_dssp             CCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCEEEEC
T ss_pred             CCCccccCCCceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCCCEEEeC
Confidence            34567777666677779999998885321                                  13468899999999999


Q ss_pred             CCCeeeeeeCC
Q 031374          130 AGIYHRFTLDT  140 (160)
Q Consensus       130 ~g~~H~f~~~~  140 (160)
                      +|..|...+.+
T Consensus       213 ~gw~H~v~s~~  223 (319)
T d1vrba1         213 RGLWHSTKSDQ  223 (319)
T ss_dssp             TTCEEEEECSS
T ss_pred             CCceEEeEecC
Confidence            99999988654

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.01  E-value=0.013  Score=43.20  Aligned_cols=59  Identities=19%  Similarity=0.314  Sum_probs=46.5

Q ss_pred             cCcccceecC----cceEEEEeeeeEEEEEecC------CCcEEEEEEcCC--cEEEeCCCCeeeeeeCCC
Q 031374           83 KNFYTEHIHA----DEEIRYCLEGSGYFDVRDE------SDQWIRIWIKAG--DLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        83 ~~~~~~H~H~----~~Ei~yvl~G~g~f~i~~~------~~~~~~~~v~~G--Dli~iP~g~~H~f~~~~~  141 (160)
                      +.+...|.|.    +..+.+|++|+..-.+-+.      -++|..+.+.+.  ..|.||+|..|.|.+-++
T Consensus        57 gvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~  127 (183)
T d1dzra_          57 NVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSE  127 (183)
T ss_dssp             TBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSS
T ss_pred             ceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecC
Confidence            5667788774    4689999999998766542      257988999775  499999999999987654

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.96  E-value=0.021  Score=42.70  Aligned_cols=60  Identities=23%  Similarity=0.345  Sum_probs=47.4

Q ss_pred             cCcccceec----CcceEEEEeeeeEEEEEecC---C---CcEEEEEEcCCc--EEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIH----ADEEIRYCLEGSGYFDVRDE---S---DQWIRIWIKAGD--LIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H----~~~Ei~yvl~G~g~f~i~~~---~---~~~~~~~v~~GD--li~iP~g~~H~f~~~~~~  142 (160)
                      +.+...|.|    ....+.+|+.|+..--+-|.   .   ++|..+.+.+.+  .|+||+|..|.|.+-+++
T Consensus        56 gvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~  127 (198)
T d2ixca1          56 GVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN  127 (198)
T ss_dssp             TBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS
T ss_pred             hhheeeeeecccchhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCc
Confidence            566778876    36799999999988776442   1   579999998765  999999999999876654

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=95.88  E-value=0.012  Score=43.98  Aligned_cols=61  Identities=15%  Similarity=0.046  Sum_probs=47.6

Q ss_pred             hcCcccceecCcceEEEEe-eeeEEEEEecC-----CCcEEEEEEcCCcEEEeCCCCeeeeeeCCCC
Q 031374           82 LKNFYTEHIHADEEIRYCL-EGSGYFDVRDE-----SDQWIRIWIKAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        82 ~~~~~~~H~H~~~Ei~yvl-~G~g~f~i~~~-----~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      ++.+...|.|......+|+ .|....-+-+.     -++|..+.+.++..|.||+|..|.|.+-+++
T Consensus        66 kgvlRGlH~q~~~k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~  132 (194)
T d1nxma_          66 KNVLRGLHAEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDF  132 (194)
T ss_dssp             TTBEEEEEECSSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSE
T ss_pred             eeEEEEEEeccchhhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeeccc
Confidence            3567789999877777765 58766555432     2579999999999999999999999876644

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.62  E-value=0.029  Score=41.24  Aligned_cols=60  Identities=13%  Similarity=0.241  Sum_probs=45.3

Q ss_pred             cCcccceec---CcceEEEEeeeeEEEEEecC------CCcEEEEEEcCC--cEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIH---ADEEIRYCLEGSGYFDVRDE------SDQWIRIWIKAG--DLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H---~~~Ei~yvl~G~g~f~i~~~------~~~~~~~~v~~G--Dli~iP~g~~H~f~~~~~~  142 (160)
                      +.....|.|   .+..+.+|++|+..--+-+.      =++|..+.+.+.  ..|.||+|..|.|.+-+++
T Consensus        56 ~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~  126 (183)
T d1ep0a_          56 GVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE  126 (183)
T ss_dssp             TBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE
T ss_pred             CceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCc
Confidence            445567765   35789999999988766543      157888888775  4899999999999876543

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.57  E-value=0.024  Score=41.87  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=44.5

Q ss_pred             cCcccceec---CcceEEEEeeeeEEEEEecC------CCcEEEEEEcCC--cEEEeCCCCeeeeeeCCC
Q 031374           83 KNFYTEHIH---ADEEIRYCLEGSGYFDVRDE------SDQWIRIWIKAG--DLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        83 ~~~~~~H~H---~~~Ei~yvl~G~g~f~i~~~------~~~~~~~~v~~G--Dli~iP~g~~H~f~~~~~  141 (160)
                      +.+...|.+   .+..+.+|++|+..-.+-+-      -++|..+.+.+.  ..|+||+|..|.|.+-++
T Consensus        59 gvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~  128 (184)
T d2ixha1          59 GVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSE  128 (184)
T ss_dssp             TBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSS
T ss_pred             CceEEEEEcccchhheecceeeeEEEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCC
Confidence            455566654   46799999999987655442      157999999884  579999999999987654

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=95.41  E-value=0.045  Score=40.87  Aligned_cols=61  Identities=21%  Similarity=0.303  Sum_probs=47.5

Q ss_pred             cCcccceecC----cceEEEEeeeeEEEEEecC------CCcEEEEEEcCC--cEEEeCCCCeeeeeeCCCCc
Q 031374           83 KNFYTEHIHA----DEEIRYCLEGSGYFDVRDE------SDQWIRIWIKAG--DLIVLPAGIYHRFTLDTSNY  143 (160)
Q Consensus        83 ~~~~~~H~H~----~~Ei~yvl~G~g~f~i~~~------~~~~~~~~v~~G--Dli~iP~g~~H~f~~~~~~~  143 (160)
                      +.+...|.|.    ...+.+|++|+..-.+-|-      -++|..+.+.+.  ..|.||+|..|.|.+-+++.
T Consensus        57 ~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t  129 (202)
T d1oi6a_          57 GVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDT  129 (202)
T ss_dssp             TBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTE
T ss_pred             heeeeeeecccccchhheeeeccccEEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeeccccc
Confidence            5667788773    4699999999998877552      257888888755  58999999999998876543

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=95.13  E-value=0.054  Score=40.01  Aligned_cols=60  Identities=18%  Similarity=0.221  Sum_probs=45.1

Q ss_pred             cCcccceec----CcceEEEEeeeeEEEEEecC------CCcEEEEEE--cCCcEEEeCCCCeeeeeeCCCC
Q 031374           83 KNFYTEHIH----ADEEIRYCLEGSGYFDVRDE------SDQWIRIWI--KAGDLIVLPAGIYHRFTLDTSN  142 (160)
Q Consensus        83 ~~~~~~H~H----~~~Ei~yvl~G~g~f~i~~~------~~~~~~~~v--~~GDli~iP~g~~H~f~~~~~~  142 (160)
                      +.+...|.|    ....+.+|++|+..-.+-+.      -++|..+.+  +.+..|+||+|..|.|.+-+++
T Consensus        56 gvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~  127 (190)
T d2c0za1          56 GVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE  127 (190)
T ss_dssp             TBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE
T ss_pred             hheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCch
Confidence            456678875    35689999999988777443      145766666  5779999999999999765543

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.097  Score=40.85  Aligned_cols=63  Identities=10%  Similarity=0.093  Sum_probs=45.5

Q ss_pred             ceecCcceEEEEeeeeEEEEEecCC-----------------------------------CcEEEEEEcCCcEEEeCCCC
Q 031374           88 EHIHADEEIRYCLEGSGYFDVRDES-----------------------------------DQWIRIWIKAGDLIVLPAGI  132 (160)
Q Consensus        88 ~H~H~~~Ei~yvl~G~g~f~i~~~~-----------------------------------~~~~~~~v~~GDli~iP~g~  132 (160)
                      .|.=..+-+..++.|+=.+.+-...                                   -+.+.+.+++||+|+||+|-
T Consensus       184 ~H~D~~~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~l~pGd~L~iP~~w  263 (335)
T d1h2ka_         184 AHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYW  263 (335)
T ss_dssp             EECCSEEEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEEECTTCEEEECTTC
T ss_pred             cccccccceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEEECCCCEEeeCCCC
Confidence            3443456778889999888773110                                   14788999999999999999


Q ss_pred             eeeeee-CCCCcEEEEEEe
Q 031374          133 YHRFTL-DTSNYVKVMQIL  150 (160)
Q Consensus       133 ~H~f~~-~~~~~~~~ir~f  150 (160)
                      .|...+ ++.+.-.++.++
T Consensus       264 ~H~V~~~~~~~~sisvn~w  282 (335)
T d1h2ka_         264 WHHIESLLNGGITITVNFW  282 (335)
T ss_dssp             EEEEEECTTSCCEEEEEEE
T ss_pred             eEEEEEcCCCCeEEEEEee
Confidence            999986 444555666663

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=93.43  E-value=0.11  Score=42.77  Aligned_cols=58  Identities=14%  Similarity=0.236  Sum_probs=43.8

Q ss_pred             cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCC---CCcEEEEEEecC
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDT---SNYVKVMQILSY  152 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~---~~~~~~ir~f~~  152 (160)
                      ..+|..|++|++.+...+.++.  .+.+++|+.++||||..=.++...   ...+.+.|-|..
T Consensus       379 ~~~Illv~~G~~~i~~~~~~~~--~~~l~~G~~~fIpa~~~~~i~~~~~~~~~~~~~~rA~~~  439 (440)
T d1pmia_         379 GPSIVIATNGKGTIQITGDDST--KQKIDTGYVFFVAPGSSIELTADSANQDQDFTTYRAFVE  439 (440)
T ss_dssp             SCEEEEEEESEEEEEETTCGGG--CEEEETTCEEEECTTCCEEEEECSSCCSSCCEEEEEECC
T ss_pred             CcEEEEEEcCEEEEEecCCCcc--EEEeCCceEEEEcCCceEEEEeecCCCCCceEEEEEecc
Confidence            4689999999999987643211  589999999999999765565543   246888887764

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.21  Score=37.14  Aligned_cols=64  Identities=23%  Similarity=0.322  Sum_probs=47.6

Q ss_pred             CcccceecC-cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCC--Ceeeeee-CCCCcEEEEEEec
Q 031374           84 NFYTEHIHA-DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTL-DTSNYVKVMQILS  151 (160)
Q Consensus        84 ~~~~~H~H~-~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g--~~H~f~~-~~~~~~~~ir~f~  151 (160)
                      .-|..|-|. .+-|.|+++|+....=. .++   ...+++||+-.+-||  +.|+-.+ .++..+..+.++.
T Consensus        52 ~gf~~HpH~g~eivT~vl~G~~~H~DS-~G~---~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~~lQiWi  119 (231)
T d1tq5a1          52 QGFGTHPHKDMEILTYVLEGTVEHQDS-MGN---KEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWI  119 (231)
T ss_dssp             CEEEEEEECSCEEEEEEEESEEEEEES-SSC---EEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEE
T ss_pred             CCCCCCCcCCeeEEEEEEeEEEEECCC-CCC---cEEECCCcEEEEecCCcEEEEeeccccCCCeEEEEEEe
Confidence            347899997 46788999998776543 222   678999999777776  8898664 4445688888876

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.93  E-value=0.17  Score=39.43  Aligned_cols=53  Identities=19%  Similarity=0.117  Sum_probs=39.1

Q ss_pred             cCcceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           91 HADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        91 H~~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      .....+.+|++|++.+. .++     .+.+++|+.++||++.-...-.+  ...+++|.|.
T Consensus       245 ~~~~~il~~~~G~~~i~-~~~-----~~~l~~G~s~~iPA~~~~~~i~g--~~~~~l~~yv  297 (299)
T d1zx5a1         245 GGVMNILYAAEGYFILR-GKE-----TADLHRGYSCLVPASTDSFTVES--ERGKIVRIYL  297 (299)
T ss_dssp             CSBCEEEEEEESCEEEE-SSS-----EEEECTTCEEEECTTCCEEEEEE--EEEEEEEEEE
T ss_pred             CCceEEEEEeccEEEEe-CCC-----EEEEcCCcEEEEecCCccEEEEc--CcEEEEEEEE
Confidence            34578999999999864 333     68999999999999988643322  2457777764

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.90  E-value=0.069  Score=41.90  Aligned_cols=38  Identities=32%  Similarity=0.401  Sum_probs=33.2

Q ss_pred             cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeee
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHR  135 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~  135 (160)
                      ...|..|++|+|.+..++.     .+.+++||.++|||+....
T Consensus       265 ~~~il~vi~G~~~i~~~~~-----~~~l~~G~~~~ipa~~~~~  302 (315)
T d1qwra_         265 SFLICSVIEGSGLLKYEDK-----TCPLKKGDHFILPAQMPDF  302 (315)
T ss_dssp             SCEEEEEEEEEEEEEETTE-----EEEEETTCEEEECTTCCCE
T ss_pred             CcEEEEEEeCeEEEEECCE-----EEEEecCcEEEEECCCCCE
Confidence            5689999999999988766     8999999999999997543

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=92.35  E-value=0.85  Score=30.60  Aligned_cols=69  Identities=17%  Similarity=0.206  Sum_probs=46.4

Q ss_pred             cCcccce----ecC-cceEEEEeeeeEEEEEe-cCC--CcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           83 KNFYTEH----IHA-DEEIRYCLEGSGYFDVR-DES--DQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        83 ~~~~~~H----~H~-~~Ei~yvl~G~g~f~i~-~~~--~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      +.+...|    +-. .-.-+-|++|+..|..- +..  .---.+.+++|+.-++||...|+...-+.+--.-+.||.
T Consensus        24 ~~ll~~H~~~nTK~Gvwg~l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsdD~~f~v~Fy~  100 (109)
T d3bb6a1          24 AGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFV  100 (109)
T ss_dssp             GGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEEEEEE
T ss_pred             HHHHhhccCCCcCCcEEEEEEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCCCEEEEEEEEE
Confidence            4566677    333 45778899999999742 221  112368899999999999999999964433333344543

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.32  E-value=0.042  Score=43.13  Aligned_cols=44  Identities=16%  Similarity=0.197  Sum_probs=31.4

Q ss_pred             CcceEEEEeee-eEEEEEecC-------------C----CcEEEEEEcCCcEEEeCCCCeee
Q 031374           92 ADEEIRYCLEG-SGYFDVRDE-------------S----DQWIRIWIKAGDLIVLPAGIYHR  135 (160)
Q Consensus        92 ~~~Ei~yvl~G-~g~f~i~~~-------------~----~~~~~~~v~~GDli~iP~g~~H~  135 (160)
                      .-+|.+|+++. .++..++..             +    +---.+.+++||.|+||||+.|.
T Consensus       115 ~k~E~~~~l~~~~~~~Gf~~~~~~e~l~~~i~~~~~~~~~lln~v~v~~Gd~i~IpaGtvHA  176 (299)
T d1zx5a1         115 GVESAWLVFNKGKAYAGFKEDVKIEELEEKLKEEDFDFKTLLNTFETTPYDTFVIRPGIPHA  176 (299)
T ss_dssp             CCCEEEEECSSCEEEEEESSCCCHHHHHHHHTSSSCCGGGGEEEEECCTTCEEEECTTCCEE
T ss_pred             CcEEEEEEcCCcceEeeccCCCCHHHHHHHHhccchhhHhhccEEEcccCCEEEeCCCCcEE
Confidence            35788888864 444444321             1    12557999999999999999998

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=91.74  E-value=0.4  Score=31.59  Aligned_cols=57  Identities=19%  Similarity=0.256  Sum_probs=40.9

Q ss_pred             ceEEEEeeeeEEEEEe-cCC--CcEEEEEEcCCcEEEeCCCCeeeeeeCCCCcEEEEEEec
Q 031374           94 EEIRYCLEGSGYFDVR-DES--DQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKVMQILS  151 (160)
Q Consensus        94 ~Ei~yvl~G~g~f~i~-~~~--~~~~~~~v~~GDli~iP~g~~H~f~~~~~~~~~~ir~f~  151 (160)
                      -.-+-|++|+..|..- +..  .--..+.+.+|+.-++||...|+..++++-.| -|.||.
T Consensus        35 wg~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve~sdD~~f-~v~Fy~   94 (96)
T d3dl3a1          35 FGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQF-NINFWS   94 (96)
T ss_dssp             EEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEE-EEEEEE
T ss_pred             EEEEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEEeCCCeEE-EEEEEE
Confidence            5778899999999642 221  22347888999999999999999997554443 344443

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.45  E-value=0.31  Score=31.89  Aligned_cols=57  Identities=23%  Similarity=0.370  Sum_probs=40.0

Q ss_pred             cceEEEEeeeeEEEEEecCCCc-EEEEEEcCCcEE----EeCCCCeeeeeeCCCCcEEEEEE
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLI----VLPAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~-~~~~~v~~GDli----~iP~g~~H~f~~~~~~~~~~ir~  149 (160)
                      .+.+++|++|.......+.+|+ .+.-.+++||++    ++..+.++..+......+.++.+
T Consensus        31 ~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i   92 (132)
T d1i5za2          31 AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI   92 (132)
T ss_dssp             CCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSSCBCCSEEEESSCEEEEEE
T ss_pred             CCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCCccceEEEEEccceEEEEE
Confidence            5789999999999887776654 555677999997    34455666665544455665554

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=91.25  E-value=0.053  Score=42.60  Aligned_cols=45  Identities=27%  Similarity=0.426  Sum_probs=32.3

Q ss_pred             cceEEEEee----eeEEEEEecCC--------------CcEEEEEEcCCcEEEeCCCCeeeee
Q 031374           93 DEEIRYCLE----GSGYFDVRDES--------------DQWIRIWIKAGDLIVLPAGIYHRFT  137 (160)
Q Consensus        93 ~~Ei~yvl~----G~g~f~i~~~~--------------~~~~~~~v~~GDli~iP~g~~H~f~  137 (160)
                      -.|..||++    ....+..+...              +-.-.+.+++||.|+||||+.|.+.
T Consensus       113 K~E~wyil~a~~~a~~~~G~~~~~~~e~~~~i~~~~~~~lln~~~l~~Gd~~~ipaG~~HA~~  175 (315)
T d1qwra_         113 KTECWYIIDCKENAEIIYGHTARSKTELVTMINSGDWEGLLRRIKIKPGDFYYVPSGTLHALC  175 (315)
T ss_dssp             CCEEEEEEEECTTCEEEEEECCSSHHHHHHHHHTTCHHHHEEEEECCTTCEEEECTTCCEEEC
T ss_pred             CCceEEEEEcCCCcEEEEcCCCCCHHHHHHHHHcCCHHHhCcEEEcccCCEEEeCCCCeeEec
Confidence            578899986    34444444321              1145789999999999999999864

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.29  Score=37.47  Aligned_cols=66  Identities=23%  Similarity=0.235  Sum_probs=49.0

Q ss_pred             ccceecCc-ceEEEEeeee-EEEEEecCCCcEEEEEEcCCcEEEeCCC--CeeeeeeCCCCcEEEEEEecCCcc
Q 031374           86 YTEHIHAD-EEIRYCLEGS-GYFDVRDESDQWIRIWIKAGDLIVLPAG--IYHRFTLDTSNYVKVMQILSYGVQ  155 (160)
Q Consensus        86 ~~~H~H~~-~Ei~yvl~G~-g~f~i~~~~~~~~~~~v~~GDli~iP~g--~~H~f~~~~~~~~~~ir~f~~~p~  155 (160)
                      +..|-|.. +-|.|+++|. ....-. .++   .-.+++||+-..-||  +.|.-.+.+...+..+.++..-|.
T Consensus        51 f~~HPH~g~e~vTy~~~G~~~~H~Ds-~G~---~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~lQiWinlp~  120 (288)
T d1j1la_          51 FPDHPHRGFETVSYLLEGGSMAHEDF-CGH---TGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRS  120 (288)
T ss_dssp             EEEEEEBSEEEEEEECSSSCEEEEET-TSC---EEEECTTCEEEEECTTCEEEEEEECSSSCEEEEEEEEECCG
T ss_pred             CCCCCcCCeEEEEEEEeCCeEEEecC-CCC---eeEecCCCEEEEecccceEecccccccccceeeEEEecCCh
Confidence            67899975 6778899985 444332 222   789999999777765  899877777778899998876554

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=89.85  E-value=0.4  Score=31.88  Aligned_cols=38  Identities=11%  Similarity=0.264  Sum_probs=31.0

Q ss_pred             cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCC
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPA  130 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~  130 (160)
                      .+.+++|++|.......+.+++.+...+.+||++-.+.
T Consensus        40 ~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~~   77 (132)
T d1ft9a2          40 ENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMHS   77 (132)
T ss_dssp             CCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESCS
T ss_pred             CCEEEEEEeCeEeeeccccccceeeccccccccccccc
Confidence            57899999999998877666667788899999985543

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=89.13  E-value=0.12  Score=42.37  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.7

Q ss_pred             EEEEcCCcEEEeCCCCeeeeeeC
Q 031374          117 RIWIKAGDLIVLPAGIYHRFTLD  139 (160)
Q Consensus       117 ~~~v~~GDli~iP~g~~H~f~~~  139 (160)
                      .+.++|||.|+||||+.|.+..+
T Consensus       267 ~v~l~pGdaifvpaG~~HAyl~G  289 (440)
T d1pmia_         267 HVGLNKGEAMFLQAKDPHAYISG  289 (440)
T ss_dssp             EEEECTTCEEEECTTCCEEEEEE
T ss_pred             eecccccceEEcCCCCceEecCC
Confidence            68999999999999999987654

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.08  E-value=0.8  Score=30.14  Aligned_cols=57  Identities=16%  Similarity=0.236  Sum_probs=38.8

Q ss_pred             cceEEEEeeeeEEEEEecCCCc-EEEEEEcCCcEE----Ee---CCCCeeeeeeCCCCcEEEEEE
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQ-WIRIWIKAGDLI----VL---PAGIYHRFTLDTSNYVKVMQI  149 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~-~~~~~v~~GDli----~i---P~g~~H~f~~~~~~~~~~ir~  149 (160)
                      .+.+++|++|.......+.+++ .+-..+.+||++    ++   +.+.++.++......+.++.+
T Consensus        30 ~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~a~~~~~vl~i   94 (134)
T d2oz6a2          30 CETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEI   94 (134)
T ss_dssp             CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCEEEEEE
T ss_pred             CCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHhcCccccccceeEEEECCCEEEEEE
Confidence            5799999999999888777665 444578999998    12   233455555555566776665

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=86.43  E-value=1.2  Score=29.08  Aligned_cols=46  Identities=11%  Similarity=0.179  Sum_probs=37.7

Q ss_pred             cceEEEEeeeeEEEEEecCCCcEEEEEEcCCcEEEeCCCCeeeeeeCCC
Q 031374           93 DEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTS  141 (160)
Q Consensus        93 ~~Ei~yvl~G~g~f~i~~~~~~~~~~~v~~GDli~iP~g~~H~f~~~~~  141 (160)
                      ..|+.=|++|++...+.+.+ .|  ....+|+-.-||++..-.......
T Consensus        40 ~~E~MeivsG~l~V~lpg~~-ew--~~~~~G~sF~Vpans~F~ikv~~~   85 (93)
T d2oyza1          40 APERMTVVKGALVVKRVGEA-DW--TTYSSGESFDVEGNSSFELQVKDA   85 (93)
T ss_dssp             SCEEEEEEESEEEEEETTCS-SC--EEEETTCEEEECSSEEEEEEESSC
T ss_pred             CCEEEEEEeeEEEEECCCCc-cc--EEeCCCCeEEECCCCEEEEEECcc
Confidence            57999999999999999753 44  667799999999998877776544