Citrus Sinensis ID: 031405

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGNMHCFTAVTPCAVLDILTPPYNEDAGRKCTYYVDYPFSTFSAVNGADNEKEEYAWLSEIDTPDDLHMRPGVYAGPAIQV
cEEEEEccccccccccccccEEEEEEEEEEEEEEEEEcccccccccccccccccEEEEEEccccEEccccccEEEEccccccEEEEEEcccEEEEEEEcccccccccccEEEEEEccccccccccccccccccEEEEEEEcccccEEEEcccccccEEEc
cEEEEEccccEEccccccccEEEEEEEEEEEEEEEccccccccccccccccccccEEEEEEEccEEccccccEEEEccccccEEEEEEcccEEEHEEcccccccccccccEEEEEccccccccccccccccccEEEEEEccccccEEEcccccccccEEc
mcifcfptsaviplhdhpgmtvFSKVLYGsmhvkaydwveparfqetkgpgyrpvrlaklatdkiltpqygtsilypksggnmhcftavtpcavldiltppynedagrkctyyvdypfstfsavngadnekEEYAWlseidtpddlhmrpgvyagpaiqv
MCIFCFPTsaviplhdhpGMTVFSKVLYGSMHVKAYDWVEParfqetkgpgyrpVRLAKlatdkiltpqyGTSILYPKSGGNMHCFTAVTPCAVLDILTPPYNEDAGRKCTYYVDYPFSTFSAVNGADNEKEEYAWLSEIDTPDDLHMRPGVYAGPAIQV
MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGNMHCFTAVTPCAVLDILTPPYNEDAGRKCTYYVDYPFSTFSAVNGADNEKEEYAWLSEIDTPDDLHMRPGVYAGPAIQV
*CIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGNMHCFTAVTPCAVLDILTPPYNEDAGRKCTYYVDYPFSTFSAVNGADNEKEEYAWLSEIDT******************
MCIFC**TSAVIPLHDHPGMTVFSKVLYGSMHVKAYDW******************LAKLATDKILTPQYGTSILYPKSGGNMHCFTAVTPCAVLDILTPPYNEDAGRKCTYYVDY******************AWLSEIDTPDDLHMRPGVYAGP*I**
MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGNMHCFTAVTPCAVLDILTPPYNEDAGRKCTYYVDYPFSTFSAVNGADNEKEEYAWLSEIDTPDDLHMRPGVYAGPAIQV
MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQ*****GYRPVRLAKLATDKILTPQYGTSILYPKSGGNMHCFTAVTPCAVLDILTPPYNEDAGRKCTYYVDYPFSTF*********KEEYAWLSEIDTPDDLHMRPGVYAGPAIQV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGNMHCFTAVTPCAVLDILTPPYNEDAGRKCTYYVDYPFSTFSAVNGADNEKEEYAWLSEIDTPDDLHMRPGVYAGPAIQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query160 2.2.26 [Sep-21-2011]
Q556I2218 Probable 2-aminoethanethi yes no 0.656 0.481 0.382 2e-14
Q96SZ5270 2-aminoethanethiol dioxyg yes no 0.975 0.577 0.341 4e-13
Q6PDY2256 2-aminoethanethiol dioxyg yes no 0.931 0.582 0.320 1e-11
>sp|Q556I2|AEDO_DICDI Probable 2-aminoethanethiol dioxygenase OS=Dictyostelium discoideum GN=ado-1 PE=3 SV=2 Back     alignment and function desciption
 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 10/115 (8%)

Query: 1   MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPG-YRPVRLAK 59
           + IF FP +  IP HDHP MTV SKVLYGS+   ++DW++     + +G   Y    +  
Sbjct: 71  LAIFAFPPNTCIPTHDHPQMTVLSKVLYGSISCDSFDWIDNTSNVKKQGKAIYTGTNILN 130

Query: 60  LATDKILTPQYGTSILYPKSGGNMHCFTAVTP-CAVLDILTPPYNEDAGRKCTYY 113
              +K+        I  P +  N+H F +    CAVLD+L PPY+ +  R CTYY
Sbjct: 131 SNDEKV-------KITLP-NENNIHRFQSGDEHCAVLDLLYPPYDSNFYRSCTYY 177

Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 1EC: 9
>sp|Q96SZ5|AEDO_HUMAN 2-aminoethanethiol dioxygenase OS=Homo sapiens GN=ADO PE=1 SV=2 Back     alignment and function description
>sp|Q6PDY2|AEDO_MOUSE 2-aminoethanethiol dioxygenase OS=Mus musculus GN=Ado PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query160
359490916251 PREDICTED: 2-aminoethanethiol dioxygenas 1.0 0.637 0.765 4e-68
224130194192 predicted protein [Populus trichocarpa] 1.0 0.833 0.773 8e-67
255638278 263 unknown [Glycine max] 1.0 0.608 0.722 2e-65
356508394 263 PREDICTED: 2-aminoethanethiol dioxygenas 1.0 0.608 0.722 2e-65
449440862 284 PREDICTED: 2-aminoethanethiol dioxygenas 0.993 0.559 0.709 6e-65
317106653254 JHL10I11.3 [Jatropha curcas] 0.993 0.625 0.728 6e-65
224118838254 predicted protein [Populus trichocarpa] 0.993 0.625 0.723 3e-64
255541896165 conserved hypothetical protein [Ricinus 1.0 0.969 0.736 1e-63
147805894 286 hypothetical protein VITISV_000851 [Viti 1.0 0.559 0.639 3e-63
356556615255 PREDICTED: 2-aminoethanethiol dioxygenas 1.0 0.627 0.696 1e-62
>gi|359490916|ref|XP_002274302.2| PREDICTED: 2-aminoethanethiol dioxygenase-like [Vitis vinifera] gi|297734135|emb|CBI15382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/162 (76%), Positives = 141/162 (87%), Gaps = 2/162 (1%)

Query: 1   MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKL 60
           MCIFCFPTS+VIPLHDHPGMTV SKVLYGS+HVKAYDWVEPAR Q+ KGPGY  VRLAKL
Sbjct: 90  MCIFCFPTSSVIPLHDHPGMTVLSKVLYGSLHVKAYDWVEPARIQKGKGPGYFTVRLAKL 149

Query: 61  ATDKILTPQYGTSILYPKSGGNMHCFTAVTPCAVLDILTPPYNEDAGRKCTYYVDYPFST 120
           A DK+LT   GTSILYPKSGGN+H FTA+TPCAVLD+L PPY E +GRKCTYY DYP+S+
Sbjct: 150 AVDKVLTAPVGTSILYPKSGGNLHYFTAITPCAVLDVLAPPYQEASGRKCTYYHDYPYSS 209

Query: 121 FSAVNGAD--NEKEEYAWLSEIDTPDDLHMRPGVYAGPAIQV 160
           FS  N A+   ++E+YAWL+EI+TPDDL+MR GVYAGPAIQV
Sbjct: 210 FSTGNEAEISGKEEDYAWLAEIETPDDLYMRQGVYAGPAIQV 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224130194|ref|XP_002328677.1| predicted protein [Populus trichocarpa] gi|222838853|gb|EEE77204.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255638278|gb|ACU19452.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356508394|ref|XP_003522942.1| PREDICTED: 2-aminoethanethiol dioxygenase-like [Glycine max] Back     alignment and taxonomy information
>gi|449440862|ref|XP_004138203.1| PREDICTED: 2-aminoethanethiol dioxygenase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|317106653|dbj|BAJ53157.1| JHL10I11.3 [Jatropha curcas] Back     alignment and taxonomy information
>gi|224118838|ref|XP_002317919.1| predicted protein [Populus trichocarpa] gi|222858592|gb|EEE96139.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255541896|ref|XP_002512012.1| conserved hypothetical protein [Ricinus communis] gi|223549192|gb|EEF50681.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|147805894|emb|CAN59849.1| hypothetical protein VITISV_000851 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356556615|ref|XP_003546619.1| PREDICTED: 2-aminoethanethiol dioxygenase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query160
TAIR|locus:2014169282 AT1G18490 "AT1G18490" [Arabido 1.0 0.567 0.692 4.3e-61
TAIR|locus:2178032276 AT5G39890 [Arabidopsis thalian 0.95 0.550 0.564 6.4e-44
TAIR|locus:2150866293 AT5G15120 [Arabidopsis thalian 0.943 0.515 0.503 4.8e-39
TAIR|locus:2041524242 AT2G42670 [Arabidopsis thalian 0.968 0.640 0.487 2.1e-36
TAIR|locus:2098984242 AT3G58670 [Arabidopsis thalian 0.943 0.623 0.444 7.7e-32
ZFIN|ZDB-GENE-041212-62248 adoa "2-aminoethanethiol (cyst 0.968 0.625 0.351 5.3e-17
ZFIN|ZDB-GENE-040426-2267254 adob "2-aminoethanethiol (cyst 0.975 0.614 0.321 4.7e-16
DICTYBASE|DDB_G0274043218 DDB_G0274043 "2-aminoethanethi 0.656 0.481 0.382 9.8e-16
DICTYBASE|DDB_G0273031218 DDB_G0273031 "2-aminoethanethi 0.656 0.481 0.382 9.8e-16
UNIPROTKB|F1RFB8270 ADO "2-aminoethanethiol (Cyste 0.962 0.570 0.345 9.8e-16
TAIR|locus:2014169 AT1G18490 "AT1G18490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 115/166 (69%), Positives = 131/166 (78%)

Query:     1 MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEP-ARFQETKG-PGYRPVRLA 58
             MCIFCFPTS+VIPLHDHP M VFSK+LYGS+HVKAYDWVEP     + KG PG  P RLA
Sbjct:   117 MCIFCFPTSSVIPLHDHPEMAVFSKILYGSLHVKAYDWVEPPCIITQDKGVPGSLPARLA 176

Query:    59 KLATDKILTPQYGTSILYPKSGGNMHCFTAVTPCAVLDILTPPYNEDAGRKCTYYVDYPF 118
             KL +DK++TPQ     LYPK+GGN+HCFTA+TPCAVLDIL+PPY E  GR C+YY+DYPF
Sbjct:   177 KLVSDKVITPQSEIPALYPKTGGNLHCFTALTPCAVLDILSPPYKESVGRSCSYYMDYPF 236

Query:   119 STFSAVNG---ADNEKE-EYAWLSEIDTPDDLHMRPGVYAGPAIQV 160
             STF+  NG    D  KE EYAWL +IDTPDDLHMRPG Y GP I+V
Sbjct:   237 STFALENGMKKVDEGKEDEYAWLVQIDTPDDLHMRPGSYTGPTIRV 282
GO:0005575 "cellular_component" evidence=ND
GO:0047800 "cysteamine dioxygenase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2178032 AT5G39890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150866 AT5G15120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041524 AT2G42670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098984 AT3G58670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041212-62 adoa "2-aminoethanethiol (cysteamine) dioxygenase a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2267 adob "2-aminoethanethiol (cysteamine) dioxygenase b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274043 DDB_G0274043 "2-aminoethanethiol dioxygenase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273031 DDB_G0273031 "2-aminoethanethiol dioxygenase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFB8 ADO "2-aminoethanethiol (Cysteamine) dioxygenase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.13.11LOW CONFIDENCE prediction!
3rd Layer1.13.11.19LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017584001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (251 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00030679001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (476 aa)
     •  0.899
GSVIVG00030677001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (495 aa)
     •  0.899
GSVIVG00023485001
SubName- Full=Chromosome undetermined scaffold_30, whole genome shotgun sequence; (95 aa)
     •  0.899
GSVIVG00006041001
SubName- Full=Chromosome undetermined scaffold_163, whole genome shotgun sequence; (375 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
pfam07847194 pfam07847, DUF1637, Protein of unknown function (D 2e-68
>gnl|CDD|219605 pfam07847, DUF1637, Protein of unknown function (DUF1637) Back     alignment and domain information 
 Score =  205 bits (524), Expect = 2e-68
 Identities = 85/160 (53%), Positives = 100/160 (62%), Gaps = 12/160 (7%)

Query: 1   MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKL 60
           M +FC P  AVIPLHDHPGMTV SKVLYGS+HVK+YDWV+     +T   G RP+RLAKL
Sbjct: 45  MGVFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDG-EPLDTTRGG-RPLRLAKL 102

Query: 61  ATD-KILTPQYGTSILYPKSGGNMHCFTAVT-PCAVLDILTPPYNEDAGRKCTYYVDYPF 118
            +D  + T    TS+LYP  GGN+H FTA+T PCA LD+L PPY+ D GR CTYY D P 
Sbjct: 103 VSDGGLFTAPSDTSVLYPTEGGNLHEFTAITGPCAFLDVLAPPYDPDDGRDCTYYRDSPL 162

Query: 119 STFSAVNGADNEKEEYAWLSEIDTPDDLHMRPGVYAGPAI 158
            +            E AWL EI  PDD       Y GP +
Sbjct: 163 PSGLP--------SEAAWLEEIPQPDDFWCDGEPYRGPEV 194

This family contains many eukaryotic hypothetical proteins. The region featured in this family is approximately 120 residues long. According to InterPro annotation, some members of this family may belong to the cupin superfamily. Length = 194

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 160
PF07847200 DUF1637: Protein of unknown function (DUF1637); In 100.0
KOG4281236 consensus Uncharacterized conserved protein [Funct 100.0
PF05995175 CDO_I: Cysteine dioxygenase type I; InterPro: IPR0 98.39
PF0788371 Cupin_2: Cupin domain; InterPro: IPR013096 This fa 97.09
TIGR03404367 bicupin_oxalic bicupin, oxalate decarboxylase fami 96.9
PRK13290125 ectC L-ectoine synthase; Reviewed 96.78
COG1917131 Uncharacterized conserved protein, contains double 95.33
KOG4064196 consensus Cysteine dioxygenase CDO1 [Amino acid tr 94.31
COG0662127 {ManC} Mannose-6-phosphate isomerase [Carbohydrate 93.39
TIGR01479468 GMP_PMI mannose-1-phosphate guanylyltransferase/ma 90.82
TIGR03404 367 bicupin_oxalic bicupin, oxalate decarboxylase fami 89.04
TIGR02451215 anti_sig_ChrR anti-sigma factor, putative, ChrR fa 88.52
COG5553191 Predicted metal-dependent enzyme of the double-str 86.82
PF1297391 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_ 84.27
PRK15460478 cpsB mannose-1-phosphate guanyltransferase; Provis 84.14
smart00835146 Cupin_1 Cupin. This family represents the conserve 83.55
PRK09943185 DNA-binding transcriptional repressor PuuR; Provis 80.44
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine Back     alignment and domain information 
Probab=100.00  E-value=6.1e-64  Score=408.83  Aligned_cols=154  Identities=56%  Similarity=1.017  Sum_probs=135.3

Q ss_pred             CeeEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCC
Q 031405            1 MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSG   80 (160)
Q Consensus         1 m~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~g   80 (160)
                      ||||+||+|++|||||||||||||||||||+||+||||+++.....   ....+.++|+++.|.++++++++++|+|++|
T Consensus        46 i~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~---~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~g  122 (200)
T PF07847_consen   46 IGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSI---EGQRQPRLARLVVDGEMTAPSDTCVLYPTSG  122 (200)
T ss_pred             EEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccc---cccccceeeEEEecceecCCCCCeEEccCCC
Confidence            7999999999999999999999999999999999999998533211   1234578999999999999999999999999


Q ss_pred             CceeEEEecC-CeeEEEEeCCCCCCCCCCcceeeeeCCCCCccccCCCCCCCCceeEEEEeCCCCCeeeeCccCCCCee
Q 031405           81 GNMHCFTAVT-PCAVLDILTPPYNEDAGRKCTYYVDYPFSTFSAVNGADNEKEEYAWLSEIDTPDDLHMRPGVYAGPAI  158 (160)
Q Consensus        81 gNlH~~~a~~-p~AflDiL~PPY~~~~~R~C~YY~~~p~~~~~~~~~~~~~~~~~~~L~ei~~P~df~~~~~~Y~GP~i  158 (160)
                      ||||+|+|++ ||||||||+|||+.+.||+|+||++++..... ....+.++.+++||+||++|+||||++++|+||+|
T Consensus       123 gNiH~f~a~~~p~AflDIL~PPY~~~~gR~C~YY~~~~~~~~~-~~~~~~~~~~~~~L~ei~~P~df~~~~~~Y~GP~v  200 (200)
T PF07847_consen  123 GNIHEFTALTGPCAFLDILAPPYDPDDGRDCTYYRPVPFSSSS-EQLPSEQDEQYVWLEEIPPPDDFYCDSGPYRGPPV  200 (200)
T ss_pred             CeeEEEEeCCCCeEEEEEccCCCCCCCCCCcEEEeecCCcccc-cccccccCCCeEEEEEcCCCCCEEEeeeeeCCCCC
Confidence            9999999998 99999999999999989999999999876653 11223444589999999999999999999999986

Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
>KOG4281 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1 Back     alignment and domain information
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) Back     alignment and domain information
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family Back     alignment and domain information
>PRK13290 ectC L-ectoine synthase; Reviewed Back     alignment and domain information
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] Back     alignment and domain information
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism] Back     alignment and domain information
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Back     alignment and domain information
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family Back     alignment and domain information
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family Back     alignment and domain information
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only] Back     alignment and domain information
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A Back     alignment and domain information
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information
>smart00835 Cupin_1 Cupin Back     alignment and domain information
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query160
3eln_A200 Cysteine dioxygenase type 1; peroxysulfenate, non- 2e-04
>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A Length = 200 Back     alignment and structure
 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 22/124 (17%)

Query: 3   IFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLAT 62
           I C+       +HDH     F K+L G++    +DW +    +  K             +
Sbjct: 74  ILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKK------------S 121

Query: 63  DKILTPQYGTSILYPKSGGNMHCFTAVTPCAVLDILTPP------YNEDAGR----KCTY 112
           ++ L       I        +   +   P   L + +PP      +++  G       T+
Sbjct: 122 ERTLRENQCAYINDSIGLHRVENVSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMTF 181

Query: 113 YVDY 116
           +  +
Sbjct: 182 HSKF 185

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query160
3uss_A211 Putative uncharacterized protein; cupin, three his 98.69
2gm6_A208 Cysteine dioxygenase type I; structural genomics, 98.66
3eln_A200 Cysteine dioxygenase type 1; peroxysulfenate, non- 98.61
3eqe_A171 Putative cystein deoxygenase; YUBC, SR112, NESG, s 98.57
3h8u_A125 Uncharacterized conserved protein with double-STR 97.53
1v70_A105 Probable antibiotics synthesis protein; structural 97.1
2q30_A110 Uncharacterized protein; double-stranded beta-heli 97.1
4e2g_A126 Cupin 2 conserved barrel domain protein; MCSG, PSI 97.05
2pfw_A116 Cupin 2, conserved barrel domain protein; cupin do 96.98
2gu9_A113 Tetracenomycin polyketide synthesis protein; X-RAY 96.83
3rns_A227 Cupin 2 conserved barrel domain protein; structura 96.46
2oa2_A148 BH2720 protein; 10175341, structural genomics, joi 96.39
2o1q_A145 Putative acetyl/propionyl-COA carboxylase, alpha; 96.38
3ht1_A145 REMF protein; cupin fold, Zn-binding, antibiotic b 96.28
3l2h_A162 Putative sugar phosphate isomerase; AFE_0303, stru 96.26
3h7j_A243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 96.25
3i7d_A163 Sugar phosphate isomerase; YP_168127.1, structural 96.23
1x82_A190 Glucose-6-phosphate isomerase; cupin superfamily, 96.08
3fjs_A114 Uncharacterized protein with RMLC-like cupin fold; 96.06
3jzv_A166 Uncharacterized protein RRU_A2000; structural geno 95.64
3kgz_A156 Cupin 2 conserved barrel domain protein; metallopr 95.59
4h7l_A157 Uncharacterized protein; structural genomics, PSI- 95.55
3ibm_A167 Cupin 2, conserved barrel domain protein; cupin 2 95.53
2y0o_A175 Probable D-lyxose ketol-isomerase; carbohydrate me 95.3
3h7j_A243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 95.28
1fi2_A201 Oxalate oxidase, germin; beta-jellyroll, oxidoredu 95.27
3lag_A98 Uncharacterized protein RPA4178; functionally unkn 95.23
1yhf_A115 Hypothetical protein SPY1581; structural genomics, 95.02
2fqp_A97 Hypothetical protein BP2299; double-stranded beta- 94.9
2vqa_A361 SLL1358 protein, MNCA; periplasmic binding protein 94.87
2ozj_A114 Cupin 2, conserved barrel; cupin superfamily prote 94.76
2d5f_A493 Glycinin A3B4 subunit; soybean, globulin, 11S,SEED 94.64
1lr5_A163 Auxin binding protein 1; beta jellyroll, double st 94.58
1y3t_A 337 Hypothetical protein YXAG; BI cupin, dioxygenase, 94.22
2vqa_A 361 SLL1358 protein, MNCA; periplasmic binding protein 94.16
2f4p_A147 Hypothetical protein TM1010; double-stranded beta- 94.05
2pa7_A141 DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug 93.99
1j58_A385 YVRK protein; cupin, decarboxyklase, oxalate, mang 93.95
3cew_A125 Uncharacterized cupin protein; all beta-protein, j 93.77
2b8m_A117 Hypothetical protein MJ0764; structural genomics, 93.72
1fxz_A476 Glycinin G1; proglycinin, legumin, SEED storage pr 93.66
2d40_A 354 Z3393, putative gentisate 1,2-dioxygenase; gentisi 93.54
2bnm_A198 Epoxidase; oxidoreductase, cupin, HTH, cation-depe 93.39
1o4t_A133 Putative oxalate decarboxylase; double-stranded be 93.37
3nw4_A 368 Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc 93.21
1dgw_A178 Canavalin; duplicated swiss-roll beta barrels, loo 93.1
3rns_A227 Cupin 2 conserved barrel domain protein; structura 92.95
2ea7_A 434 7S globulin-1; beta barrel, cupin superfamily, pla 92.86
3es1_A172 Cupin 2, conserved barrel domain protein; YP_00116 92.59
2o8q_A134 Hypothetical protein; cpuin-like fold, structural 92.4
1j58_A 385 YVRK protein; cupin, decarboxyklase, oxalate, mang 92.22
1y3t_A337 Hypothetical protein YXAG; BI cupin, dioxygenase, 92.2
3lwc_A119 Uncharacterized protein; structural genomics, unkn 92.14
3c3v_A510 Arachin ARAH3 isoform; peanut allergen, allergy, g 91.92
3ksc_A496 LEGA class, prolegumin; PEA prolegumin, 11S SEED s 91.75
1vj2_A126 Novel manganese-containing cupin TM1459; structura 91.5
3bu7_A394 Gentisate 1,2-dioxygenase; cupin domain, oxidoredu 91.46
3ebr_A159 Uncharacterized RMLC-like cupin; structural genomi 91.46
3cjx_A165 Protein of unknown function with A cupin-like FOL; 91.09
1uij_A 416 Beta subunit of beta conglycinin; double-stranded 90.97
3st7_A369 Capsular polysaccharide synthesis enzyme CAP5F; ro 90.64
3kgl_A466 Cruciferin; 11S SEED globulin, rapeseed, SEED stor 90.24
3bu7_A 394 Gentisate 1,2-dioxygenase; cupin domain, oxidoredu 89.51
2q1z_B195 Anti-sigma factor CHRR, transcriptional activator; 89.25
2e9q_A459 11S globulin subunit beta; cucubitin, pumpkin SEED 89.21
1y9q_A192 Transcriptional regulator, HTH_3 family; transcrip 89.09
2cav_A 445 Protein (canavalin); vicilin, 7S SEED protein, dom 89.09
1dgw_X79 Canavalin; duplicated swiss-roll beta barrels, loo 88.65
2xlg_A239 SLL1785 protein, CUCA; metal binding protein, cupi 88.56
3fz3_A531 Prunin; TREE NUT allergen, allergy, amandin, almon 88.31
3ejk_A174 DTDP sugar isomerase; YP_390184.1, structural geno 87.73
2phl_A397 Phaseolin; plant SEED storage protein(vicilin); HE 85.3
2ozi_A98 Hypothetical protein RPA4178; APC6210, putative pr 84.6
2vpv_A166 Protein MIF2, MIF2P; nucleus, mitosis, centromere, 84.23
1uij_A416 Beta subunit of beta conglycinin; double-stranded 83.81
4i4a_A128 Similar to unknown protein; structural genomics, P 83.4
1rc6_A261 Hypothetical protein YLBA; structural genomics, NY 82.85
4b29_A217 Dimethylsulfoniopropionate lyase; hydrolase, dimet 82.43
3qac_A465 11S globulin SEED storage protein; 11S SEED storag 80.99
>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19 Back     alignment and structure
Probab=98.69  E-value=1.4e-07  Score=76.60  Aligned_cols=95  Identities=15%  Similarity=0.254  Sum_probs=71.9

Q ss_pred             eeEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCC
Q 031405            2 CIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGG   81 (160)
Q Consensus         2 ~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~gg   81 (160)
                      -+|+.+||...|+|||. +.++.+||.|+++.+.|+|.+...             +.+.....++. +.+...+.|..| 
T Consensus        76 ~~l~W~PGq~spiHDH~-swg~~~Vl~G~l~e~~y~~~~~g~-------------~~~~~~~~~l~-~G~v~~~~p~~g-  139 (211)
T 3uss_A           76 VSFVWGPGQITPVHDHR-VWGLIGMLRGAEYSQPYAFDAGGR-------------PHPSGARRRLE-PGEVEALSPRIG-  139 (211)
T ss_dssp             EEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSC-------------EEECSCCEEEC-TTCEEEEBTTTB-
T ss_pred             EEEEECCCCcCCCCCCC-eeEEEEeeeceEEEEEeeeCCCCC-------------cccccceEEec-CCCEEEECCCCC-
Confidence            47889999999999999 999999999999999999875321             11111123444 445677777664 


Q ss_pred             ceeEEEec---CCeeEEEEeCCCCCCCCCCcceeeee
Q 031405           82 NMHCFTAV---TPCAVLDILTPPYNEDAGRKCTYYVD  115 (160)
Q Consensus        82 NlH~~~a~---~p~AflDiL~PPY~~~~~R~C~YY~~  115 (160)
                      .||++.+.   +|+.=|-|.+||+...   .|+-|.+
T Consensus       140 ~IH~V~N~~~d~~avSLHvYg~pl~~~---~r~~fd~  173 (211)
T 3uss_A          140 DVHQVSNAFSDRTSISIHVYGANIGAV---RRAVFSA  173 (211)
T ss_dssp             CCEEEEESCSSSCEEEEEEESSCGGGC---CEEEECT
T ss_pred             CEEEEccCCCCCCEEEEEEcCCCCCcc---eeEEECC
Confidence            89999964   4899999999998642   4888865
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19 Back     alignment and structure
>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A Back     alignment and structure
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis} Back     alignment and structure
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Back     alignment and structure
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Back     alignment and structure
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Back     alignment and structure
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans} Back     alignment and structure
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21 Back     alignment and structure
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Back     alignment and structure
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3} Back     alignment and structure
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Back     alignment and structure
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Back     alignment and structure
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Back     alignment and structure
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Back     alignment and structure
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus} Back     alignment and structure
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Back     alignment and structure
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp} Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Back     alignment and structure
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris} Back     alignment and structure
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Back     alignment and structure
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Back     alignment and structure
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Back     alignment and structure
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Back     alignment and structure
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Back     alignment and structure
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Back     alignment and structure
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A* Back     alignment and structure
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Back     alignment and structure
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Back     alignment and structure
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18 Back     alignment and structure
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Back     alignment and structure
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Back     alignment and structure
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A Back     alignment and structure
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A Back     alignment and structure
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Back     alignment and structure
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} Back     alignment and structure
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans} Back     alignment and structure
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Back     alignment and structure
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Back     alignment and structure
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} Back     alignment and structure
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Back     alignment and structure
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Back     alignment and structure
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Back     alignment and structure
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Back     alignment and structure
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134} Back     alignment and structure
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha} Back     alignment and structure
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Back     alignment and structure
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Back     alignment and structure
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Back     alignment and structure
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Back     alignment and structure
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Back     alignment and structure
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Back     alignment and structure
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Back     alignment and structure
>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X Back     alignment and structure
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A Back     alignment and structure
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Back     alignment and structure
>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Back     alignment and structure
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae} Back     alignment and structure
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Back     alignment and structure
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp} Back     alignment and structure
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11 Back     alignment and structure
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism} Back     alignment and structure
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 160
d3elna1186 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {R 7e-11
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]} Length = 186 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

 Score = 55.8 bits (134), Expect = 7e-11
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 22/127 (17%)

Query: 1   MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKL 60
           + I C+       +HDH     F K+L G++    +DW +    +  K            
Sbjct: 68  LMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKK----------- 116

Query: 61  ATDKILTPQYGTSILYPKSGGNMHCFTAVTPCAVLDILTPP------YNEDAGR----KC 110
            +++ L       I        +   +   P   L + +PP      +++  G       
Sbjct: 117 -SERTLRENQCAYINDSIGLHRVENVSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTM 175

Query: 111 TYYVDYP 117
           T++  + 
Sbjct: 176 TFHSKFG 182

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query160
d3elna1186 Cysteine dioxygenase type I {Rattus norvegicus [Ta 99.58
d1v70a_105 Hypothetical protein TTHA0104 {Thermus thermophilu 98.3
d2gm6a1192 Cysteine dioxygenase type I {Ralstonia eutropha [T 97.79
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 97.25
d2b8ma1108 Hypothetical protein MJ0764 {Archaeon Methanococcu 96.92
d1o4ta_115 Hypothetical protein TM1287 {Thermotoga maritima [ 96.56
d2d40a1 308 Gentisate 1,2-dioxygenase {Escherichia coli [TaxId 96.18
d1vj2a_114 Hypothetical protein TM1459 {Thermotoga maritima [ 95.81
d1lr5a_160 Auxin binding protein {Maize (Zea mays) [TaxId: 45 95.48
d1j58a_372 Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil 95.47
d1y3ta1 330 Hypothetical protein YxaG {Bacillus subtilis [TaxI 94.14
d1y3ta1330 Hypothetical protein YxaG {Bacillus subtilis [TaxI 93.26
d2f4pa1134 Hypothetical protein TM1010 {Thermotoga maritima [ 92.54
d2et1a1201 Germin {Barley (Hordeum vulgare) [TaxId: 4513]} 90.68
d1juha_ 348 Quercetin 2,3-dioxygenase {Aspergillus japonicus [ 90.44
d2phda1 351 Gentisate 1,2-dioxygenase {Pseudaminobacter salicy 89.02
d1sfna_245 Hypothetical protein DR1152 {Deinococcus radiodura 87.55
g1dgw.1168 Seed storage 7S protein {Jack bean (Canavalia ensi 86.52
d1x82a_190 Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc 86.38
d1fxza2174 Seed storage 7S protein {Soybean (Glycine max), pr 83.81
d1sq4a_273 Glyoxylate-induced protein PA1140 {Pseudomonas aer 83.39
d1od5a2173 Seed storage 7S protein {Soybean (Glycine max), gl 81.47
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=99.58  E-value=2.7e-15  Score=117.35  Aligned_cols=95  Identities=20%  Similarity=0.485  Sum_probs=71.0

Q ss_pred             CeeEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCC
Q 031405            1 MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSG   80 (160)
Q Consensus         1 m~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~g   80 (160)
                      +.+++.++|...|+|||++|.+++|||.|+++.+.|+|.+....         .+   +...+..+.+ .+.+.+.|.. 
T Consensus        68 l~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~---------~l---~~~~~~~~~~-g~v~~~~~~~-  133 (186)
T d3elna1          68 LMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSN---------EM---IKKSERTLRE-NQCAYINDSI-  133 (186)
T ss_dssp             EEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCC---------CC---CEEEEEEECT-TCEEEECTTT-
T ss_pred             EEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcc---------cc---cccceEEecC-CCEEEeCCCC-
Confidence            46889999999999999999999999999999999999753321         11   1112223333 3455666654 


Q ss_pred             CceeEEEec---CCeeEEEEeCCCCCCCCCCcceeeee
Q 031405           81 GNMHCFTAV---TPCAVLDILTPPYNEDAGRKCTYYVD  115 (160)
Q Consensus        81 gNlH~~~a~---~p~AflDiL~PPY~~~~~R~C~YY~~  115 (160)
                       +||++.+.   ++|+.|+|.+|||+     .|++|.+
T Consensus       134 -~iH~v~N~~~~~~avsLHvYspP~~-----~c~~yd~  165 (186)
T d3elna1         134 -GLHRVENVSHTEPAVSLHLYSPPFD-----TCHAFDQ  165 (186)
T ss_dssp             -CEEEEECCCSSCCEEEEEEEESCCS-----EEEEECT
T ss_pred             -CcceeecCCCCCCeEEEEEeCCChh-----hceeeec
Confidence             69999986   37899999999986     3888854
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Back     information, alignment and structure
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Back     information, alignment and structure
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Back     information, alignment and structure
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Back     information, alignment and structure