Citrus Sinensis ID: 031429

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALNLVRGVPLTPKEKETMLDLLTPPPPQRPSPSSWWRRWRGQ
Secondary Structure (PSIPRED)
cccccHHHHccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHcccccccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccHHHHHHHHHHHcccccccccccHHHHHcccc
Coil and Loop (DISEMBL)
MASNDDELKKKQMADARARNisrnvrctdcgsqsieDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDfgetvlyapkfDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALNlvrgvpltpkeketmldlltppppqrpspsswwrrwrgq
Flexible Loop (DISEMBL)
MASNDDELKKKQMAdararnisrnvrctdcgsqsiedsQADIAILLRKLIRDEiqagktdkevyKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALNLVRGVPLTPKEKETmldlltppppqrpspsswwrrwrgq
Low Complexity Region (SEG)
MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALNLVRGVPLTPKEKETMLDLLTppppqrpspsswwrrwrGQ
Disordered region (IsUnstruct)
**************************CTDC********QADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALNLVRGVPL********************************
Disordered Region (DISOPRED)
*ASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHR***********************E**************************
Disordered Region (DISEMBL)
****************RARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALNLVRGVPLTPKEKETMLDLLTP******************
Disordered Region (DISPRO)
****DDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQ*************************LDLLT*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALNLVRGVPLTPKEKETMLDLLTPPPPQRPSPSSWWRRWRGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
P45406	151	Cytochrome c-type biogene	yes	no	0.823	0.867	0.370	2e-15
Q00501	149	Cytochrome c-type biogene	yes	no	0.735	0.785	0.325	6e-11
P45405	160	Cytochrome c-type biogene	yes	no	0.496	0.493	0.417	4e-10
Q9I3N0	155	Cytochrome c-type biogene	yes	no	0.622	0.638	0.352	8e-10
P52226	156	Cytochrome c-type biogene	no	no	0.584	0.596	0.357	8e-09
P0ABN0	350	Cytochrome c-type biogene	yes	no	0.547	0.248	0.315	4e-07
P0ABM9	350	Cytochrome c-type biogene	N/A	no	0.547	0.248	0.315	4e-07
P46458	459	Putative cytochrome c-typ	no	no	0.452	0.156	0.305	2e-05
Q8X5S5	127	Formate-dependent nitrite	N/A	no	0.427	0.535	0.294	0.0002
P32711	127	Formate-dependent nitrite	N/A	no	0.427	0.535	0.294	0.0002

>sp|P45406|CCMH_RHIME Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) GN=ccmH PE=3 SV=2

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 12/143 (8%)

Query: 1   MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60
            A N DE+      +ARAR IS  +RC  C +QSI+DS A++A  LR L+R+ ++ G +D
Sbjct: 19  FAVNPDEVLADPALEARARAISAQLRCMVCQNQSIDDSNAELAKDLRLLVRERLKNGDSD 78

Query: 61  KEVYKKLEDDFGETVLYAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHRQKTNVHIMA 118
           + V   +   +GE VL  P+ + +T  LW  P  LLVAG    + A  R   +       
Sbjct: 79  EAVISYVVSRYGEFVLLNPRLEAKTLVLWGMPAILLVAGIITLVVAARRRGAR------- 131

Query: 119 LNLVRGVPLTPKEKETMLDLLTP 141
              V G PL+ +EKE +  LL P
Sbjct: 132 ---VPGAPLSDEEKERLDRLLRP 151

Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase.
Rhizobium meliloti (strain 1021) (taxid: 266834)

>sp|Q00501|CCMH_RHOCB Cytochrome c-type biogenesis protein ccl2 OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=ccl2 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 2   ASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDK 61
           A   DE+      +ARAR IS+ +RC  C  ++I++S A ++  LR  +R+ + AG +D 
Sbjct: 17  AVQPDEVLSDPGLEARARQISQVLRCPVCQGENIDESNAGVSRDLRLAVRERLVAGDSDA 76

Query: 62  EVYKKLEDDFGETVLYAPKFDLQTAAL-WLSPLLVAGAAAGI--WAYNRHRQKTNVHIMA 118
           +V   ++D FGE VL+ P+       L W+ P ++  A  GI  W   R R++  V +++
Sbjct: 77  QVIDYIKDRFGEYVLFEPERRGANLILYWIGPAVLVVALGGIFLWLRGRRREEEPVPVLS 136

Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase.

Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942)

>sp|P45405|CCMH_BRAJA Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium japonicum (strain USDA 110) GN=ccmH PE=3 SV=2

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 49/79 (62%)

Query: 6   DELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYK 65
           DE+      + RAR++SR +RC  C +QSI+DS A +A  LR L+R+ I AG ++ +V  
Sbjct: 25  DEIMSDPAKETRARDLSRELRCMVCQNQSIDDSDAPLARDLRLLVRERIAAGDSNSQVLD 84

Query: 66  KLEDDFGETVLYAPKFDLQ 84
            L   +GE VL  P+F+ Q
Sbjct: 85  FLVARYGEFVLLKPRFERQ 103

Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase.

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

>sp|Q9I3N0|CCMH_PSEAE Cytochrome c-type biogenesis protein CcmH OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ccmH PE=1 SV=1

 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 17  RARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVL 76
           R RN+++ +RC  C +Q I DS A IA  LRK I  ++Q GK+D E+   +   +G+ V 
Sbjct: 35  RFRNLTQELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDFVR 94

Query: 77  YAPKFDLQTAALWLSP---LLVAGAAAGIWAYNRHRQKTNVH 115
           Y P  + +T  LW  P   LL      G+    R R    V 
Sbjct: 95  YKPPVNERTWLLWFGPGALLLFGVLVIGVIVLRRRRTAAKVQ 136

Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

>sp|P52226|CCMH_PSEFL Cytochrome c-type biogenesis protein CcmH OS=Pseudomonas fluorescens GN=ccmH PE=3 SV=1

 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 17  RARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVL 76
           R R++++ +RC  C +Q I DS A IA  LR+ I   +  GK D+++   + D +G+ V 
Sbjct: 34  RFRDLTKELRCPKCQNQDIADSNAPIATDLRREIFRMLGEGKDDQQIIDFMVDRYGDFVR 93

Query: 77  YAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHR 109
           Y P    +TA LW  P  LL+AG         R R
Sbjct: 94  YKPALTGKTALLWFGPAGLLLAGVVVMAVIVRRRR 128

Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase.

Pseudomonas fluorescens (taxid: 294)

>sp|P0ABN0|CCMH_SHIFL Cytochrome c-type biogenesis protein CcmH OS=Shigella flexneri GN=ccmH PE=3 SV=1

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 6   DELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYK 65
           DE +++Q      R ++  +RC  C + SI DS + IA  LR+ + + +Q GK+ KE+  
Sbjct: 27  DEAQEQQF-----RQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVD 81

Query: 66  KLEDDFGETVLYAPKFDLQTAALWLSPLLVAG 97
            +   +G  V Y P     T  LW+ P++  G
Sbjct: 82  YMVARYGNFVTYDPPLTPLTVLLWVLPVVAIG 113

May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase.

Shigella flexneri (taxid: 623)

>sp|P0ABM9|CCMH_ECOLI Cytochrome c-type biogenesis protein CcmH OS=Escherichia coli (strain K12) GN=ccmH PE=1 SV=1

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 6   DELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYK 65
           DE +++Q      R ++  +RC  C + SI DS + IA  LR+ + + +Q GK+ KE+  
Sbjct: 27  DEAQEQQF-----RQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVD 81

Query: 66  KLEDDFGETVLYAPKFDLQTAALWLSPLLVAG 97
            +   +G  V Y P     T  LW+ P++  G
Sbjct: 82  YMVARYGNFVTYDPPLTPLTVLLWVLPVVAIG 113

May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P46458|CCMH_HAEIN Putative cytochrome c-type biogenesis protein CcmH OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ccmH PE=5 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 21  ISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPK 80
           +++++RC  C + +I DS A IA+ +R  + + +Q GK+  +V   +   +G  V Y P 
Sbjct: 38  LTQSLRCPQCQNNNIADSNATIAVDMRGKVFELLQEGKSKNDVVDYMVARYGNFVTYDPP 97

Query: 81  FDLQTAALWLSP 92
               T  LW++P
Sbjct: 98  ITASTLVLWIAP 109

May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|Q8X5S5|NRFF_ECO57 Formate-dependent nitrite reductase complex subunit NrfF OS=Escherichia coli O157:H7 GN=nrfF PE=3 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 38/68 (55%)

Query: 18  ARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLY 77
           A NI+  +RC  C +Q++ +S A +A+ +R  +   +  GK++ E+   + + +G+ V Y
Sbjct: 35  ALNIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEGKSEVEIIGWMTERYGDFVRY 94

Query: 78  APKFDLQT 85
            P    QT
Sbjct: 95  NPPLTGQT 102

Not required for the biosynthesis of any of the c-type cytochromes. Possible subunit of a heme lyase.

Escherichia coli O157:H7 (taxid: 83334)

>sp|P32711|NRFF_ECOLI Formate-dependent nitrite reductase complex subunit NrfF OS=Escherichia coli (strain K12) GN=nrfF PE=3 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 37/68 (54%)

Query: 18  ARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLY 77
           A NI+  +RC  C +Q++ +S A +A+ +R  +   +  GK + E+   + + +G+ V Y
Sbjct: 35  ALNIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEGKNEVEIIGWMTERYGDFVRY 94

Query: 78  APKFDLQT 85
            P    QT
Sbjct: 95  NPPLTGQT 102

Not required for the biosynthesis of any of the c-type cytochromes. Possible subunit of a heme lyase.

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
255549922	159	Cytochrome c-type biogenesis protein cyc	0.968	0.968	0.863	1e-74
351726916	159	uncharacterized protein LOC100306221 [Gl	1.0	1.0	0.811	6e-72
225442585	159	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.748	8e-70
449463154	158	PREDICTED: cytochrome c-type biogenesis	0.993	1.0	0.761	2e-69
147828267	159	hypothetical protein VITISV_010507 [Viti	1.0	1.0	0.742	3e-69
357481797	172	Cytochrome c-type biogenesis protein ccm	1.0	0.924	0.720	7e-66
224070915	159	predicted protein [Populus trichocarpa]	0.968	0.968	0.825	2e-65
293336121	152	uncharacterized protein LOC100383068 [Ze	0.955	1.0	0.754	6e-65
357142078	151	PREDICTED: cytochrome c-type biogenesis	0.930	0.980	0.758	1e-64
326506532	152	predicted protein [Hordeum vulgare subsp	0.930	0.973	0.745	4e-64

>gi|255549922|ref|XP_002516012.1| Cytochrome c-type biogenesis protein cycL precursor, putative [Ricinus communis] gi|223544917|gb|EEF46432.1| Cytochrome c-type biogenesis protein cycL precursor, putative [Ricinus communis]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/154 (86%), Positives = 144/154 (93%)

Query: 4   NDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEV 63
           N+DE KK Q+ + RARNIS NVRCT+CGSQSIEDSQADIAILLRKLIRDEIQAGK+DKE+
Sbjct: 5   NEDEAKKAQILETRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIQAGKSDKEI 64

Query: 64  YKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALNLVR 123
           +KKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAA GIWAYN+HRQKTNVHIMALNLVR
Sbjct: 65  FKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAGGIWAYNKHRQKTNVHIMALNLVR 124

Query: 124 GVPLTPKEKETMLDLLTPPPPQRPSPSSWWRRWR 157
           GVPLTPKEKETMLD+LTPP  +  +PSSWWRRWR
Sbjct: 125 GVPLTPKEKETMLDILTPPTTKGATPSSWWRRWR 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726916|ref|NP_001235607.1| uncharacterized protein LOC100306221 [Glycine max] gi|255627913|gb|ACU14301.1| unknown [Glycine max]

 Score =  275 bits (702), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 129/159 (81%), Positives = 142/159 (89%)

Query: 1   MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60
           MAS DD +KK  + DARARNIS NVRCT+CGSQSIEDSQADIAILLRKLIRDEIQ+GKTD
Sbjct: 1   MASEDDAVKKAMIVDARARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIQSGKTD 60

Query: 61  KEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALN 120
           K++YKKLED+FGETVLY PKFD+QTAALWL PLL+AG+AAG+WAYNRH+QKTNVHIMALN
Sbjct: 61  KDIYKKLEDEFGETVLYTPKFDMQTAALWLLPLLIAGSAAGVWAYNRHKQKTNVHIMALN 120

Query: 121 LVRGVPLTPKEKETMLDLLTPPPPQRPSPSSWWRRWRGQ 159
           LVRGVPLTPKEKETMLD+LTPP  Q      WWRRW GQ
Sbjct: 121 LVRGVPLTPKEKETMLDILTPPRSQGVRTPFWWRRWLGQ 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442585|ref|XP_002284390.1| PREDICTED: uncharacterized protein LOC100254866 [Vitis vinifera] gi|297743249|emb|CBI36116.3| unnamed protein product [Vitis vinifera]

 Score =  268 bits (684), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 142/159 (89%)

Query: 1   MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60
           M S +D  K+ Q+ + RARNIS NVRCT+CGSQSIEDSQAD+AILLRKLIRDE+++GK D
Sbjct: 1   MESEEDARKRAQVVEERARNISHNVRCTECGSQSIEDSQADVAILLRKLIRDEVRSGKND 60

Query: 61  KEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALN 120
           KE+YKKL++DFGE+VLY PKFD+QTAALWLSP++  G A GIWAYNRHRQKT+VHIMALN
Sbjct: 61  KEIYKKLQEDFGESVLYTPKFDMQTAALWLSPIIFGGVAVGIWAYNRHRQKTDVHIMALN 120

Query: 121 LVRGVPLTPKEKETMLDLLTPPPPQRPSPSSWWRRWRGQ 159
           LVRGVPLTPKE+ET+LDL+TPPPP+  +P SWWR+WRGQ
Sbjct: 121 LVRGVPLTPKERETILDLVTPPPPEGATPFSWWRKWRGQ 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463154|ref|XP_004149299.1| PREDICTED: cytochrome c-type biogenesis protein CcmH-like [Cucumis sativus] gi|449507764|ref|XP_004163124.1| PREDICTED: cytochrome c-type biogenesis protein CcmH-like [Cucumis sativus]

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 121/159 (76%), Positives = 146/159 (91%), Gaps = 1/159 (0%)

Query: 1   MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60
           M +++D LKK Q+ +ARARNIS NVRC +CGSQSIEDSQADIAILLRKLIRDEI++GK+D
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALN 120
           K++YKKLE+D+GET+LY PKFDLQTA LWLSP++VAGAA G+WAY++H+Q++NVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKETMLDLLTPPPPQRPSPSSWWRRWRGQ 159
           LVRGVPLTPKEK+TMLDLL+PPP QR +PSSWWR WR Q
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQR-TPSSWWRNWRRQ 158

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828267|emb|CAN75404.1| hypothetical protein VITISV_010507 [Vitis vinifera]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 142/159 (89%)

Query: 1   MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60
           M S +D  K+ Q+ + RARNIS NVRCT+CGSQSIEDSQAD+AILLRKLIRDE+++GK D
Sbjct: 1   MESEEDARKRAQVVEERARNISHNVRCTECGSQSIEDSQADVAILLRKLIRDEVRSGKND 60

Query: 61  KEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALN 120
           KE+YKKL++DFGE+VLY PKFD+QTAALWLSP++  G A GIWAYNRHRQKT+VHIMALN
Sbjct: 61  KEIYKKLQEDFGESVLYTPKFDMQTAALWLSPIIFGGVAVGIWAYNRHRQKTDVHIMALN 120

Query: 121 LVRGVPLTPKEKETMLDLLTPPPPQRPSPSSWWRRWRGQ 159
           LVRGVPLTPKE+ET+LDL+TPPPP+  +P SWWR+WRG+
Sbjct: 121 LVRGVPLTPKERETILDLVTPPPPEGATPFSWWRKWRGR 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481797|ref|XP_003611184.1| Cytochrome c-type biogenesis protein ccmH [Medicago truncatula] gi|355512519|gb|AES94142.1| Cytochrome c-type biogenesis protein ccmH [Medicago truncatula]

 Score =  254 bits (649), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 124/172 (72%), Positives = 142/172 (82%), Gaps = 13/172 (7%)

Query: 1   MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60
           MAS DD++K+K + DARAR+IS NVRCTDCGSQSIEDSQADIAILLRKLIRDEI++GK+D
Sbjct: 1   MASKDDDVKEKLIVDARARDISHNVRCTDCGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEVYKKLEDDFGETVLYAPKFDLQTAALWLSP--------LLVAGAAAGIWAYNRHRQKT 112
            ++YKKL+ +FGE++LY PKFD QTAALWLSP        LLV GAA G+WAY +HRQKT
Sbjct: 61  TDIYKKLQTEFGESILYKPKFDWQTAALWLSPVKFSRGLKLLVGGAAVGVWAYQKHRQKT 120

Query: 113 NVHIMALNLVRGVPLTPKEKETMLDLLTPPP-----PQRPSPSSWWRRWRGQ 159
           NVHIMALNLVRGVPLTP+EKETMLD+LTPP       QR   SSWWRR RGQ
Sbjct: 121 NVHIMALNLVRGVPLTPREKETMLDILTPPASQGFKSQRVETSSWWRRLRGQ 172

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070915|ref|XP_002303294.1| predicted protein [Populus trichocarpa] gi|222840726|gb|EEE78273.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/155 (82%), Positives = 139/155 (89%), Gaps = 1/155 (0%)

Query: 5   DDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVY 64
           D+ELKK Q+ DARARNIS NVRCT+CGSQSIEDSQADIAILLRKLIRDEIQAGKTDK+++
Sbjct: 6   DEELKKAQVVDARARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIQAGKTDKDIF 65

Query: 65  KKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALNLVRG 124
           KKLEDDFGETVLYAPKFD+QTAALWLSPLLVAG A G WAY +HRQ TNVHIMAL+LVRG
Sbjct: 66  KKLEDDFGETVLYAPKFDMQTAALWLSPLLVAGVAGGFWAYKKHRQNTNVHIMALDLVRG 125

Query: 125 VPLTPKEKETMLDLLTPPPPQRPSPSSWWRRWRGQ 159
            PLTPKEKETMLD+LTPPPP   S  SWWR W G+
Sbjct: 126 APLTPKEKETMLDILTPPPPG-GSTPSWWRSWTGR 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293336121|ref|NP_001169212.1| uncharacterized protein LOC100383068 [Zea mays] gi|195613152|gb|ACG28406.1| cytochrome c-type biogenesis protein cycL precursor [Zea mays] gi|223975477|gb|ACN31926.1| unknown [Zea mays] gi|223975557|gb|ACN31966.1| unknown [Zea mays] gi|413936370|gb|AFW70921.1| cytochrome c-type biogenesis protein cycL isoform 1 [Zea mays] gi|413936371|gb|AFW70922.1| cytochrome c-type biogenesis protein cycL isoform 2 [Zea mays]

 Score =  251 bits (642), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 120/159 (75%), Positives = 141/159 (88%), Gaps = 7/159 (4%)

Query: 1   MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60
           MA+ +D +K++Q+ + RARNIS NVRCT+CGSQSIEDSQAD+AILLRKLIRDEI+AGK+D
Sbjct: 1   MAAEED-VKQRQIIENRARNISHNVRCTECGSQSIEDSQADVAILLRKLIRDEIKAGKSD 59

Query: 61  KEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALN 120
           KE+YKKLEDD+GETVLYAPKFDLQTA +WLSP++V G AAGIWAY RHRQ+TNVHIMALN
Sbjct: 60  KEIYKKLEDDYGETVLYAPKFDLQTAGIWLSPVIVGGIAAGIWAYQRHRQRTNVHIMALN 119

Query: 121 LVRGVPLTPKEKETMLDLLTPPPPQRPSPSSWWRRWRGQ 159
           LVRGVPLTP+EKETMLD+LTPP    P+P  WW  W G+
Sbjct: 120 LVRGVPLTPREKETMLDILTPP----PAPRKWW--WPGK 152

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357142078|ref|XP_003572452.1| PREDICTED: cytochrome c-type biogenesis protein CcmH-like [Brachypodium distachyon]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/153 (75%), Positives = 139/153 (90%), Gaps = 5/153 (3%)

Query: 1   MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60
           MAS +D +K++Q+ + RARNIS NVRCT+CGSQSIEDSQAD+AILLR+LIRDEI++GK+D
Sbjct: 1   MASEED-VKQRQIVEDRARNISHNVRCTECGSQSIEDSQADVAILLRRLIRDEIKSGKSD 59

Query: 61  KEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALN 120
           KE+YKKLE+DFGETVLYAPKFDLQTAA+WLSP++V G AAG+WAY +HRQ+TNVHIMALN
Sbjct: 60  KEIYKKLEEDFGETVLYAPKFDLQTAAIWLSPVIVGGVAAGMWAYQKHRQRTNVHIMALN 119

Query: 121 LVRGVPLTPKEKETMLDLLTPPPPQRPSPSSWW 153
           LVRGVPLTP+EKETM+D+LTPPPP R     WW
Sbjct: 120 LVRGVPLTPREKETMIDILTPPPPAR----RWW 148

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326506532|dbj|BAJ86584.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  249 bits (635), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 139/153 (90%), Gaps = 5/153 (3%)

Query: 1   MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60
           MAS +D +K++Q+ + RARNIS NVRCT+CGSQSIEDSQAD+A+LLR+LIRD+I++GK+D
Sbjct: 1   MASEED-VKQRQVVEDRARNISHNVRCTECGSQSIEDSQADVAVLLRRLIRDKIKSGKSD 59

Query: 61  KEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALN 120
           KE+YKKLE+DFGETVLYAPKFDLQTAA+WLSP++V G AAG+WAY +HRQ+TNVHIMALN
Sbjct: 60  KEIYKKLEEDFGETVLYAPKFDLQTAAIWLSPVIVGGVAAGVWAYQKHRQRTNVHIMALN 119

Query: 121 LVRGVPLTPKEKETMLDLLTPPPPQRPSPSSWW 153
           LVRGVPLTP+EKETM+D+LTPPPP R     WW
Sbjct: 120 LVRGVPLTPREKETMIDILTPPPPAR----RWW 148

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2037718	159	CCMH [Arabidopsis thaliana (ta	0.867	0.867	0.757	7.2e-52
TIGR_CMR|SPO_1881	150	SPO_1881 "cytochrome c biogene	0.679	0.72	0.357	1.5e-12
TIGR_CMR|ECH_0636	134	ECH_0636 "cytochrome c biogene	0.591	0.701	0.315	1.2e-10
TIGR_CMR|APH_0687	135	APH_0687 "cytochrome c biogene	0.584	0.688	0.294	2.5e-10
TIGR_CMR|SO_0268	159	SO_0268 "cytochrome c-type bio	0.584	0.584	0.336	2.5e-10
UNIPROTKB|Q0C2L1	132	HNE_1314 "Putative cytochrome	0.660	0.795	0.336	4.1e-10
TIGR_CMR|CPS_1037	155	CPS_1037 "cytochrome c-type bi	0.528	0.541	0.333	4.1e-10
UNIPROTKB|P0ABM9	350	ccmH "CcmH" [Escherichia coli	0.647	0.294	0.311	5.2e-09
UNIPROTKB|Q48GL7	156	cycL "Cytochrome c-type biogen	0.597	0.608	0.319	5.9e-09
UNIPROTKB|Q4KG20	156	cycL "Cytochrome c-type biogen	0.584	0.596	0.336	9.7e-09

TAIR|locus:2037718 CCMH [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 106/140 (75%), Positives = 122/140 (87%)

Query:     1 MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60
             M   D+E KK QM DARARNIS NVRCT+CGSQSIEDSQADIAILLR+LIR+EI AGKTD
Sbjct:     1 MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query:    61 KEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGA-AAGIWAYNRHRQKTNVHIMAL 119
             KE+Y KLED+FGETVLYAPKFDLQTAALWL+P+++AG  AAGI  Y +HR + NV IMAL
Sbjct:    61 KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGI-VYQKHRLRKNVDIMAL 119

Query:   120 NLVRGVPLTPKEKETMLDLL 139
             NL+RGVPLTPKE+ T+LD+L
Sbjct:   120 NLIRGVPLTPKERVTILDVL 139

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0017004 "cytochrome complex assembly" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0016491 "oxidoreductase activity" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TIGR_CMR|SPO_1881 SPO_1881 "cytochrome c biogenesis family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 39/109 (35%), Positives = 63/109 (57%)

Query:     2 ASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDK 61
             A   DE+      ++RAR++S  +RC  C ++SI++S A++A  LR L+R+ + AG +D+
Sbjct:    17 AVQPDEVLDDPALESRARSLSEGLRCLVCRNESIDESNAELARDLRLLLRERLVAGDSDE 76

Query:    62 EVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGI-WAYNRHR 109
             +    + D +GE VL  P        LWL+  L+  AAAG+ W + R R
Sbjct:    77 QAVAYIVDRYGEYVLLKPTATGANWLLWLAGPLMLLAAAGMGWGFVRGR 125

GO:0003824 "catalytic activity" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

TIGR_CMR|ECH_0636 ECH_0636 "cytochrome c biogenesis family protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 30/95 (31%), Positives = 57/95 (60%)

Query:     3 SNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKE 62
             S D++L   +M + RA ++ + VRC  C  +SI +SQ+ +A  +R +IR++I+ G  D +
Sbjct:    27 SIDEKLVNNEM-ELRAIDLFKIVRCLICSGESIYESQSQLAYDMRLMIRNKIKNGYNDNQ 85

Query:    63 VYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAG 97
             +  +L + +G  +   P ++  T  LW+ P+L+ G
Sbjct:    86 IITELRNYYGNQITILPPYNPYTYPLWILPILIFG 120

GO:0003824 "catalytic activity" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

TIGR_CMR|APH_0687 APH_0687 "cytochrome c biogenesis family protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 28/95 (29%), Positives = 56/95 (58%)

Query:     2 ASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDK 61
             ++N+D L K Q  ++RA  + +  +C  C  +S+ +SQ+  A+ +R  IR +I +G TD+
Sbjct:    24 SANEDFLSKDQ--ESRAIKLFKATKCMTCSGESLYESQSAFAVEMRSFIRRQIVSGMTDE 81

Query:    62 EVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVA 96
             ++   L+  +G  +L    ++  T  LW++P+ +A
Sbjct:    82 QILDILKQRYGSAILGDTPYNADTYFLWITPIFLA 116

GO:0003824 "catalytic activity" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

TIGR_CMR|SO_0268 SO_0268 "cytochrome c-type biogenesis protein CcmH" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 32/95 (33%), Positives = 51/95 (53%)

Query:    17 RARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVL 76
             RA  ++ ++RC  C +Q++ DS + +A  LR  +   +  GK D E+ + +   +GE VL
Sbjct:    39 RALELAHSLRCPQCQNQNLIDSNSPVASDLRLEVFKMVDEGKGDDEIIEFMTSRYGEFVL 98

Query:    77 YAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHR 109
             Y PK + +T  LWL P  LL+ G   G     + R
Sbjct:    99 YKPKMETKTYILWLGPVGLLLLGLIVGFIFIRKQR 133

GO:0003824 "catalytic activity" evidence=ISS

UNIPROTKB|Q0C2L1 HNE_1314 "Putative cytochrome c-type biogenesis protein CycL" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 36/107 (33%), Positives = 55/107 (51%)

Query:    14 ADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGE 73
             A+ RA+ + R VRC  C ++ +  S A IA  +R  IR+ +  G TD E+       +GE
Sbjct:    23 AELRAQALMREVRCVACENEPVSQSSAPIAEDMRTRIREMVAEGATDTEIRDWFVSRYGE 82

Query:    74 TVLYAPKF-DLQTAALWLSPLLVAGAAAGIW-AYNRHRQKTNVHIMA 118
              VL+ P   D  +  LW  P ++ GA AGI     R+ ++ N  + A
Sbjct:    83 FVLFRPPARDPASWLLWTLPFILLGAGAGIGIVLARNAKRKNGEVEA 129

GO:0003824 "catalytic activity" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

TIGR_CMR|CPS_1037 CPS_1037 "cytochrome c-type biogenesis protein CcmH" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 28/84 (33%), Positives = 48/84 (57%)

Query:    12 QMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDF 71
             ++   R + +S+ +RC  C +Q++ DS + IA  LR+ + + +Q GK D E+   + D +
Sbjct:    33 EVTKIRFQALSKELRCPKCQNQNLADSNSPIAADLRRELYELLQQGKADSEIVNFMVDRY 92

Query:    72 GETVLYAPKFDLQTAALWLSPLLV 95
             GE VLY P+    T  LW  P ++
Sbjct:    93 GEFVLYRPRVSELTYILWFGPAVL 116

GO:0017004 "cytochrome complex assembly" evidence=ISS

UNIPROTKB|P0ABM9 ccmH "CcmH" [Escherichia coli K-12 (taxid:83333)]

 Score = 140 (54.3 bits), Expect = 5.2e-09, P = 5.2e-09
 Identities = 33/106 (31%), Positives = 54/106 (50%)

Query:    10 KKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLED 69
             K +  + + R ++  +RC  C + SI DS + IA  LR+ + + +Q GK+ KE+   +  
Sbjct:    26 KDEAQEQQFRQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVA 85

Query:    70 DFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWA-YNRHRQKTNV 114
              +G  V Y P     T  LW+ P++  G   G W  Y R R++  V
Sbjct:    86 RYGNFVTYDPPLTPLTVLLWVLPVVAIGI--GGWVIYARSRRRVRV 129

GO:0005886 "plasma membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0017004 "cytochrome complex assembly" evidence=IEA

UNIPROTKB|Q48GL7 cycL "Cytochrome c-type biogenesis protein CycL" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 31/97 (31%), Positives = 51/97 (52%)

Query:    16 ARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETV 75
             AR   +++ +RC  C +Q I DS A IA  LRK I   +  G++++++   + D +G+ V
Sbjct:    34 ARYSELTKELRCPKCQNQDIADSNAPIAADLRKEIYRMLGEGQSNQQIIDFMVDRYGDFV 93

Query:    76 LYAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHRQ 110
              Y P  + +T  LW  P  LL+ G     +   R R+
Sbjct:    94 RYKPSLNARTWLLWFGPAGLLIGGLVVIGFIVGRRRK 130

GO:0003824 "catalytic activity" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

UNIPROTKB|Q4KG20 cycL "Cytochrome c-type biogenesis protein CycL" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 32/95 (33%), Positives = 48/95 (50%)

Query:    17 RARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVL 76
             R   +++ +RC  C +Q I DS A IA  LRK I   +  GK ++++   + D +G+ V 
Sbjct:    35 RFHELTKELRCPKCQNQDIADSNAPIAADLRKEIFRMLGEGKDNQQIIDFMVDRYGDFVR 94

Query:    77 YAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHR 109
             Y P    +TA LW  P  LL+ G    +    R R
Sbjct:    95 YRPALTGKTALLWFGPAGLLLGGLVIIVVIVRRRR 129

GO:0005506 "iron ion binding" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P45406	CCMH_RHIME	No assigned EC number	0.3706	0.8238	0.8675	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034368001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (159 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	ccmC	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (250 aa)	•		•				•		0.955
	GSVIVG00024639001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (159 aa)	•		•				•		0.951
	ccmFN	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (343 aa)	•		•		•		•		0.892
	GSVIVG00035630001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (343 aa)	•		•		•		•		0.883
	GSVIVG00025580001	SubName- Full=Putative uncharacterized protein (Chromosome chr8 scaffold_34, whole genome shotg [...] (230 aa)	•		•				•		0.787
	GSVIVG00027816001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (338 aa)							•		0.522
	GSVIVG00016385001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (198 aa)	•								0.522
	GSVIVG00021810001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence (Mitochondrial cytoch [...] (112 aa)					•		•		0.472
	GSVIVG00035302001	SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence;; Electron car [...] (112 aa)					•		•		0.464
	GSVIVG00029410001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (380 aa)							•		0.459

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
pfam03918	144	pfam03918, CcmH, Cytochrome C biogenesis protein	2e-29
COG3088	153	COG3088, CcmH, Uncharacterized protein involved in	2e-26
TIGR03147	126	TIGR03147, cyt_nit_nrfF, cytochrome c nitrite redu	5e-17
PRK10144	126	PRK10144, PRK10144, formate-dependent nitrite redu	1e-10

>gnl|CDD|217792 pfam03918, CcmH, Cytochrome C biogenesis protein

 Score =  104 bits (262), Expect = 2e-29
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 11/125 (8%)

Query: 16  ARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETV 75
           ARAR +S+ +RC  C +QSI DS A +A  LR  +R+ +  GK+D+E+   +   +G+ V
Sbjct: 29  ARARELSKELRCPVCQNQSIADSNAPLARDLRLEVREMLVEGKSDEEIIDYMVARYGDFV 88

Query: 76  LYAPKFDLQTAALWLSP-LLVAGAAAGIWAYNRHRQKTNVHIMALNLVRGVPLTPKEKET 134
           LY P     T  LWL P LL+      +    R R++              PL+ +E+  
Sbjct: 89  LYKPPLTGATLLLWLGPLLLLLLGLGVLVRRIRRRRR----------AAAPPLSEEERAR 138

Query: 135 MLDLL 139
           +  LL
Sbjct: 139 LKALL 143

Members of this family include NrfF, CcmH, CycL, Ccl2. Length = 144

>gnl|CDD|225630 COG3088, CcmH, Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]

 Score = 97.0 bits (242), Expect = 2e-26
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 13/140 (9%)

Query: 2   ASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDK 61
           A+ D E       + RAR ++  +RC  C +QSI DS A IA  LR  + + +Q GK+D+
Sbjct: 22  ATIDTEQFADPAQEQRARALTEELRCPQCQNQSIADSNAPIARDLRHQVYELLQEGKSDQ 81

Query: 62  EVYKKLEDDFGETVLYAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHRQKTNVHIMAL 119
           ++   +   +GE VLY P    QT  LW  P  LL+ G    +    R R +        
Sbjct: 82  QIIDYMVARYGEFVLYKPPLTGQTLLLWGLPVVLLLLGGVL-LVRRARRRVR-------- 132

Query: 120 NLVRGVPLTPKEKETMLDLL 139
                  L+ +E+  +  LL
Sbjct: 133 --EPPQTLSAEEEARLARLL 150

Length = 153

>gnl|CDD|213778 TIGR03147, cyt_nit_nrfF, cytochrome c nitrite reductase, accessory protein NrfF

 Score = 72.0 bits (177), Expect = 5e-17
 Identities = 28/95 (29%), Positives = 52/95 (54%)

Query: 16  ARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETV 75
            RA  +++++RC  C +Q++ +S + IA  LR  +   +  GK+++++   +   FG+ V
Sbjct: 32  TRAVALAKSLRCPQCQNQNLVESNSPIAYDLRHEVYSMVNEGKSNQQIIDFMTARFGDFV 91

Query: 76  LYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQ 110
            Y P F  QT  LWL P+++   A  +    R R+
Sbjct: 92  RYNPPFKWQTLLLWLLPVVLLLLAFVLLWRVRRRR 126

[Energy metabolism, Electron transport]. Length = 126

>gnl|CDD|182265 PRK10144, PRK10144, formate-dependent nitrite reductase complex subunit NrfF; Provisional

 Score = 55.3 bits (133), Expect = 1e-10
 Identities = 26/94 (27%), Positives = 50/94 (53%)

Query: 17  RARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVL 76
           +A NI+  +RC  C +Q++ +S A +A+ +R  +   +  GK++ E+   + + +G+ V 
Sbjct: 33  QALNIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEGKSEVEIIGWMTERYGDFVR 92

Query: 77  YAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQ 110
           Y P    QT  LW  P+++    A I    R ++
Sbjct: 93  YNPPLTGQTLVLWALPVVLLLLMALILWRVRAKR 126

Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
COG3088	153	CcmH Uncharacterized protein involved in biosynthe	100.0
PRK10144	126	formate-dependent nitrite reductase complex subuni	100.0
TIGR03147	126	cyt_nit_nrfF cytochrome c nitrite reductase, acces	100.0
PF03918	148	CcmH: Cytochrome C biogenesis protein; InterPro: I	100.0
PRK09458	75	pspB phage shock protein B; Provisional	92.71
TIGR02976	75	phageshock_pspB phage shock protein B. This model	91.33
PF06667	75	PspB: Phage shock protein B; InterPro: IPR009554 T	91.17
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	86.56
smart00831	64	Cation_ATPase_N Cation transporter/ATPase, N-termi	84.91
PF13798	158	PCYCGC: Protein of unknown function with PCYCGC mo	84.89
PF08671	30	SinI: Anti-repressor SinI; InterPro: IPR010981 The	83.7
PF00690	69	Cation_ATPase_N: Cation transporter/ATPase, N-term	81.6

>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-51  Score=324.24  Aligned_cols=132  Identities=30%  Similarity=0.450  Sum_probs=116.5

Q ss_pred             CCCchHhhhcHHHHHHHHHHHhcccCCCCCCCCccccCcHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccccccCCC
Q 031429            2 ASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKF   81 (159)
Q Consensus         2 ~~~~~~~~~d~~~e~r~~~l~~~LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~VL~~Pp~   81 (159)
                      +..|++.|.||++|+||++|+++||||+||||||+||||+||.|||.+||++|.+|+||+||+||||+||||||+|+||+
T Consensus        22 a~~d~~~f~~~~qe~ra~~Lt~~LRCp~CQNqsIadSnA~IA~DlR~~V~e~l~eGkS~~qIid~mVaRYG~FVly~Pp~  101 (153)
T COG3088          22 ATIDTEQFADPAQEQRARALTEELRCPQCQNQSIADSNAPIARDLRHQVYELLQEGKSDQQIIDYMVARYGEFVLYKPPL  101 (153)
T ss_pred             hcCCcccCCCHHHHHHHHHHHHhcCCCcCCCCChhhhccHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhhcceeeecCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhHhhhhccCCCCCCHHHHHHHHhhcCCC
Q 031429           82 DLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALNLVRGVPLTPKEKETMLDLLTPP  142 (159)
Q Consensus        82 ~~~t~lLW~~P~l~~~~~~~~~~~~rrr~~~~~~~~~~~~~~~~~Ls~eE~~rl~~lL~~~  142 (159)
                      ++.||+||++|++++++|+++++.+.||+...         ....||++|.+|+.+||++.
T Consensus       102 ~~~T~lLW~~Pv~llllG~~~~~~~~rrr~~~---------~~~~Ls~ee~~rl~~ll~~~  153 (153)
T COG3088         102 TGQTLLLWGLPVVLLLLGGVLLVRRARRRVRE---------PPQTLSAEEEARLARLLRGD  153 (153)
T ss_pred             chhHHHHHHhHHHHHHHHHHHHHHHHhhhhcc---------CCCCCChhHHHHHHHHhcCC
Confidence            99999999999887766655544333332211         24579999999999999863

>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional

Probab=100.00  E-value=3.5e-47  Score=293.13  Aligned_cols=101  Identities=26%  Similarity=0.422  Sum_probs=93.7

Q ss_pred             CchHhhhcHHHHHHHHHHHhcccCCCCCCCCccccCcHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccccccCCCCc
Q 031429            4 NDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDL   83 (159)
Q Consensus         4 ~~~~~~~d~~~e~r~~~l~~~LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~VL~~Pp~~~   83 (159)
                      .+.+.|+||++|+|+++|+++||||+||||||+||||++|+|||.+||+||++|+||+||++|||+||||||||+||+++
T Consensus        20 ~~~~~~~~~~~e~r~~~L~~~LRC~vCqnqsiadSna~iA~dmR~~Vr~~i~~G~sd~eI~~~~v~RYG~~Vl~~Pp~~~   99 (126)
T PRK10144         20 VDTWQFANPQQQQQALNIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEGKSEVEIIGWMTERYGDFVRYNPPLTG   99 (126)
T ss_pred             CCcccCCCHHHHHHHHHHHHcCCCCCCCCCChhhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCeEEecCCCCc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 031429           84 QTAALWLSPLLVAGAAAGIWA  104 (159)
Q Consensus        84 ~t~lLW~~P~l~~~~~~~~~~  104 (159)
                      .||+||++|++++++|+++++
T Consensus       100 ~t~~LW~~P~~lll~g~~~~~  120 (126)
T PRK10144        100 QTLVLWALPVVLLLLMALILW  120 (126)
T ss_pred             chHHHHHHHHHHHHHHHHHHH
Confidence            999999999886655544433

>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF

Probab=100.00  E-value=9e-47  Score=290.86  Aligned_cols=101  Identities=29%  Similarity=0.486  Sum_probs=94.3

Q ss_pred             CchHhhhcHHHHHHHHHHHhcccCCCCCCCCccccCcHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccccccCCCCc
Q 031429            4 NDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDL   83 (159)
Q Consensus         4 ~~~~~~~d~~~e~r~~~l~~~LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~VL~~Pp~~~   83 (159)
                      .+++.|+|+++|+|+++|+++|||||||||||+||||++|+|||++||+||++|+||+||++|||+||||||||+||+++
T Consensus        20 ~~~~~f~~~~~e~r~~~L~~~LRC~vCqnqsiadS~a~iA~dmR~~Vr~~i~~G~Sd~eI~~~~v~RYG~~Vly~Pp~~~   99 (126)
T TIGR03147        20 VDTYQFHNPEQRTRAVALAKSLRCPQCQNQNLVESNSPIAYDLRHEVYSMVNEGKSNQQIIDFMTARFGDFVLYNPPFKW   99 (126)
T ss_pred             CCcccCCCHHHHHHHHHHHHhCCCCCCCCCChhhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCeEEecCCCCc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 031429           84 QTAALWLSPLLVAGAAAGIWA  104 (159)
Q Consensus        84 ~t~lLW~~P~l~~~~~~~~~~  104 (159)
                      .||+||++|++++++|+++++
T Consensus       100 ~t~~LW~~P~lll~~G~~~~~  120 (126)
T TIGR03147       100 QTLLLWLLPVLLLLLAFVLLW  120 (126)
T ss_pred             chHHHHHHHHHHHHHHHHHHH
Confidence            999999999987766554443

>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2

Probab=100.00  E-value=4.9e-47  Score=298.17  Aligned_cols=123  Identities=33%  Similarity=0.514  Sum_probs=61.8

Q ss_pred             hhhcHHHHHHHHHHHhcccCCCCCCCCccccCcHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccccccCCCCchhHH
Q 031429            8 LKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAA   87 (159)
Q Consensus         8 ~~~d~~~e~r~~~l~~~LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~VL~~Pp~~~~t~l   87 (159)
                      .+ |+++++|+++|+++|||||||||||+|||+++|+|||++|+++|++|+|++||++|||+||||+|||+||++|+||+
T Consensus        25 ~~-~~~~e~r~~~l~~~LrCp~Cq~qsi~~s~a~~A~dmR~~I~~~l~~G~s~~eI~~~~v~rYG~~Vl~~Pp~~~~~~~  103 (148)
T PF03918_consen   25 EF-DPEQEARARELAKELRCPVCQNQSIADSNAPIARDMRREIREMLAEGKSDEEIIDYFVERYGEFVLYEPPFKGFTWL  103 (148)
T ss_dssp             ---SHHHHHHHHHHHHCCE-TTTTS-CTTT--SHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHTTT-EES--S------
T ss_pred             cC-ChhHHHHHHHHHhcccCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCcceeecCCCCccHHH
Confidence            44 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHhhccchhhHhhhhccCCCCCCHHHHHHHHhhcC
Q 031429           88 LWLSPLLVAGAAAGIWAY-NRHRQKTNVHIMALNLVRGVPLTPKEKETMLDLLT  140 (159)
Q Consensus        88 LW~~P~l~~~~~~~~~~~-~rrr~~~~~~~~~~~~~~~~~Ls~eE~~rl~~lL~  140 (159)
                      ||++|++++++|++++++ .||+++..         ...+||++|++||+++||
T Consensus       104 lW~~P~~~l~~g~~~~~~~~rr~~~~~---------~~~~ls~~e~~rl~~ll~  148 (148)
T PF03918_consen  104 LWLGPFLLLLLGGALLFRRLRRWRRRA---------AQEELSEEERRRLDALLK  148 (148)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCC---------CCCCCCHHHHHHHHHHhC
Confidence            999999876665444333 33332221         125799999999999986

; PDB: 2KW0_A 2HL7_A.

>PRK09458 pspB phage shock protein B; Provisional

Probab=92.71  E-value=0.24  Score=35.60  Aligned_cols=16  Identities=19%  Similarity=0.316  Sum_probs=12.1

Q ss_pred             CCCCHHHHHHHHhhcC
Q 031429          125 VPLTPKEKETMLDLLT  140 (159)
Q Consensus       125 ~~Ls~eE~~rl~~lL~  140 (159)
                      ..||++|+++|++|.+
T Consensus        34 ~~Ls~~d~~~L~~L~~   49 (75)
T PRK09458         34 QGLSQEEQQRLAQLTE   49 (75)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            4699999888876543

>TIGR02976 phageshock_pspB phage shock protein B

Probab=91.33  E-value=0.58  Score=33.44  Aligned_cols=14  Identities=14%  Similarity=0.415  Sum_probs=10.3

Q ss_pred             CCCCHHHHHHHHhh
Q 031429          125 VPLTPKEKETMLDL  138 (159)
Q Consensus       125 ~~Ls~eE~~rl~~l  138 (159)
                      ..||++|.++|++|
T Consensus        34 ~~ls~~d~~~L~~L   47 (75)
T TIGR02976        34 ASLSTDDQALLQEL   47 (75)
T ss_pred             CCCCHHHHHHHHHH
Confidence            35888888877664

This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.

>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences

Probab=91.17  E-value=0.6  Score=33.41  Aligned_cols=15  Identities=13%  Similarity=0.366  Sum_probs=11.4

Q ss_pred             CCCCHHHHHHHHhhc
Q 031429          125 VPLTPKEKETMLDLL  139 (159)
Q Consensus       125 ~~Ls~eE~~rl~~lL  139 (159)
                      ..||++|+++|++|.
T Consensus        34 ~gLs~~d~~~L~~L~   48 (75)
T PF06667_consen   34 QGLSEEDEQRLQELY   48 (75)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            469999998776654

The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=86.56  E-value=0.56  Score=35.62  Aligned_cols=10  Identities=10%  Similarity=0.109  Sum_probs=6.2

Q ss_pred             HHHHHHHHHH
Q 031429           86 AALWLSPLLV   95 (159)
Q Consensus        86 ~lLW~~P~l~   95 (159)
                      |+||++=+++
T Consensus         2 W~l~~iii~~   11 (130)
T PF12273_consen    2 WVLFAIIIVA   11 (130)
T ss_pred             eeeHHHHHHH
Confidence            6777665543

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus

Probab=84.91  E-value=5.5  Score=25.93  Aligned_cols=41  Identities=20%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             HcCCChHHHHHHHHHhhcccccccCCCCchhHHHH---HHHHHHH
Q 031429           55 QAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAALW---LSPLLVA   96 (159)
Q Consensus        55 ~~G~Sd~eI~~~~v~RYGd~VL~~Pp~~~~t~lLW---~~P~l~~   96 (159)
                      ..|.|++|+ +...++||.=.+-.|+.+..-..+|   .-|++++
T Consensus         8 ~~GLs~~~v-~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p~~~i   51 (64)
T smart00831        8 ESGLSSEEA-ARRLERYGPNELPPPKKRSPLLRFLRQFHNPLIYI   51 (64)
T ss_pred             ccCCCHHHH-HHHHHHhCCCCCCCCCCCCHHHHHHHHHHhHHHHH
Confidence            459999995 5778899999998887666655555   2476543

This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.

>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif

Probab=84.89  E-value=6.9  Score=31.77  Aligned_cols=62  Identities=16%  Similarity=0.242  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHhcccCCCCCCCC-----cccc---------------C---cHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 031429           13 MADARARNISRNVRCTDCGSQS-----IEDS---------------Q---ADIAILLRKLIRDEIQAGKTDKEVYKKLED   69 (159)
Q Consensus        13 ~~e~r~~~l~~~LRCpvCqnqs-----iadS---------------n---a~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~   69 (159)
                      .......+|-+.+-|=+.++++     ..+|               .   ..+..+.-.+-..|.++|+|..||++++-+
T Consensus        64 ~~A~~~~~~L~~iPCYCGCges~gH~Sn~~Cfi~e~~~dG~Vvwd~Hg~~C~vCl~ia~~a~~~~~~Gks~~eIR~~ID~  143 (158)
T PF13798_consen   64 QMAAKHPELLEYIPCYCGCGESAGHKSNLDCFIDEIKEDGSVVWDDHGTRCGVCLDIAVQAVQMYQEGKSPKEIRQYIDE  143 (158)
T ss_pred             HHHHHhHHHHHcCCcccCCCCCCCCccccccceeeccCCCceeecccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            4556778899999999888862     2222               2   267888889999999999999999999999


Q ss_pred             hhccc
Q 031429           70 DFGET   74 (159)
Q Consensus        70 RYGd~   74 (159)
                      .|.+-
T Consensus       144 kYk~g  148 (158)
T PF13798_consen  144 KYKEG  148 (158)
T ss_pred             HHHhC
Confidence            99874

>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []

Probab=83.70  E-value=2.3  Score=25.52  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHH
Q 031429           44 ILLRKLIRDEIQAGKTDKEVYKKLE   68 (159)
Q Consensus        44 ~dmR~~Ir~~l~~G~Sd~eI~~~~v   68 (159)
                      .+-...|.+....|.|.+||.+|+.
T Consensus         3 ~EW~~Li~eA~~~Gls~eeir~FL~   27 (30)
T PF08671_consen    3 EEWVELIKEAKESGLSKEEIREFLE   27 (30)
T ss_dssp             HHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3556789999999999999999985

SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.

>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=81.60  E-value=3.3  Score=27.71  Aligned_cols=44  Identities=18%  Similarity=0.262  Sum_probs=32.9

Q ss_pred             HHcCCChHHHHHHHHHhhcccccccCCCCchhHHHHH---HHHHHHHH
Q 031429           54 IQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAALWL---SPLLVAGA   98 (159)
Q Consensus        54 l~~G~Sd~eI~~~~v~RYGd~VL~~Pp~~~~t~lLW~---~P~l~~~~   98 (159)
                      ...|.|++|+.+. .++||.=.+-.++.++.-..+|-   -|++++.+
T Consensus        17 ~~~GLs~~ev~~r-~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~   63 (69)
T PF00690_consen   17 SSQGLSSEEVEER-RKKYGPNELPEPKKKSLWRIFLKQFKNPFIILLL   63 (69)
T ss_dssp             TSSBBTHHHHHHH-HHHHSSSSTTTTTSSSHHHHHHHHTTSHHHHHHH
T ss_pred             CCCCCCHHHHHHH-HHhcccccccccccCcHHHHHHHHHHhHHHHHHH
Confidence            3689999888765 48999999988888887777773   46654433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
2hl7_A	84	Crystal Structure Of The Periplasmic Domain Of Ccmh		6e-08
2kw0_A	90	Solution Structure Of N-Terminal Domain Of Ccmh Fro		4e-05

>pdb|2HL7|A Chain A, Crystal Structure Of The Periplasmic Domain Of Ccmh From Pseudomonas Aeruginosa Length = 84

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 17 RARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVL 76
          R RN+++ +RC  C +Q I DS A IA  LRK I  ++Q GK+D E+   +   +G+ V 
Sbjct: 19 RFRNLTQELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDFVR 78
Query: 77 YAP 79
          Y P
Sbjct: 79 YKP 81

>pdb|2KW0|A Chain A, Solution Structure Of N-Terminal Domain Of Ccmh From Escherichia.Coli Length = 90

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 10 KKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLED 69
          K +  + + R ++  +RC  C + SI DS + IA  LR+ + + +Q GK+ KE+   +  
Sbjct: 9  KDEAQEQQFRQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVA 68
Query: 70 DFGETVLYAP 79
           +G  V Y P
Sbjct: 69 RYGNFVTYDP 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
2kw0_A	90	CCMH protein; oxidoreductase, cytochrome C maturat	2e-22
2hl7_A	84	Cytochrome C-type biogenesis protein CCMH; three-h	5e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli} Length = 90

 Score = 84.3 bits (209), Expect = 2e-22
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 15 DARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGET 74
          + + R ++  +RC  C + SI DS + IA  LR+ + + +Q GK+ KE+   +   +G  
Sbjct: 14 EQQFRQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNF 73

Query: 75 VLYAPKFDLQT 85
          V Y P      
Sbjct: 74 VTYDPPLTPLE 84

>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa} Length = 84

 Score = 83.1 bits (206), Expect = 5e-22
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 1  MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60
          MA +  E         R RN+++ +RC  C +Q I DS A IA  LRK I  ++Q GK+D
Sbjct: 4  MAIDTYEFASDAE-RERFRNLTQELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSD 62

Query: 61 KEVYKKLEDDFGETVLYAPKFD 82
           E+   +   +G+ V Y P  +
Sbjct: 63 GEIVDYMVARYGDFVRYKPPVN 84

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 30/175 (17%), Positives = 52/175 (29%), Gaps = 37/175 (21%)

Query: 7   ELKKKQMADARARN---ISRNVRCTDCGSQSIE--DSQADIAILLR-KLIRDEIQAGKTD 60
              ++ +      N   +  NV      +++    +    I +  R K + D + A  T 
Sbjct: 232 AELRRLLKSKPYENCLLVLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 61  KEVYKKLEDDFGET--------VLYAPKFDLQTAALWLSPLLVAGAAAGI---------W 103
                                  L     DL    L  +P  ++  A  I         W
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 104 AYNRHRQKTNVHIMALNLVRGVPLTPKEKETMLDLLTPPPPQRPSPSS-----WW 153
            +    + T +   +LN+     L P E   M D L+  PP    P+      W+
Sbjct: 348 KHVNCDKLTTIIESSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
2kw0_A	90	CCMH protein; oxidoreductase, cytochrome C maturat	100.0
2hl7_A	84	Cytochrome C-type biogenesis protein CCMH; three-h	100.0

>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}

Probab=100.00  E-value=3.9e-39  Score=235.08  Aligned_cols=80  Identities=29%  Similarity=0.478  Sum_probs=76.6

Q ss_pred             chHhhhcHHHHHHHHHHHhcccCCCCCCCCccccCcHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccccccCCCCch
Q 031429            5 DDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQ   84 (159)
Q Consensus         5 ~~~~~~d~~~e~r~~~l~~~LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~VL~~Pp~~~~   84 (159)
                      ..+.|+||++|+|+++|+++||||+||||||+||||++|.|||.+||+||++|+||+||++|||+||||||||+||+++.
T Consensus         4 ~~~~~~~~~~e~r~~~L~~~LRCpvCqnqsI~dSnA~iA~dlR~~Vre~l~~G~Sd~eI~~~mv~RYGdfVly~Pp~~~~   83 (90)
T 2kw0_A            4 DVLQFKDEAQEQQFRQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPL   83 (90)
T ss_dssp             SSCCCSSHHHHHHHHHHHHSSBCSCTTSCTTTSCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTCBCSCCSCC-
T ss_pred             ccccCCCHHHHHHHHHHHHcCcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCeEEeeCCCCch
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999985

>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.1e-38  Score=229.97  Aligned_cols=77  Identities=34%  Similarity=0.544  Sum_probs=73.3

Q ss_pred             hHhhhcHHHHHHHHHHHhcccCCCCCCCCccccCcHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccccccCCCC
Q 031429            6 DELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFD   82 (159)
Q Consensus         6 ~~~~~d~~~e~r~~~l~~~LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~VL~~Pp~~   82 (159)
                      .+.|+||++|+|+++|+++||||+||||||+||||++|+|||.+||+||++|+||+||++|||+||||||||+||++
T Consensus         8 ~~~~~~~~~e~r~~~l~~~LRCp~Cqnqsi~dSna~iA~dlR~~V~~~l~~G~sd~eI~~~~v~RYG~fVly~Pp~~   84 (84)
T 2hl7_A            8 TYEFASDAERERFRNLTQELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDFVRYKPPVN   84 (84)
T ss_dssp             GSCCSSHHHHHHHHHHHHHEECTTSSSCBTTTCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTCEECCC--
T ss_pred             cccCCCHHHHHHHHHHHHcCcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCeeeeeCCCC
Confidence            44789999999999999999999999999999999999999999999999999999999999999999999999985

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1pbya1	85	Quinohemoprotein amine dehydrogenase A chain, doma	89.12
d1y0ua_	89	Putative arsenical resistance operon repressor AF0	86.2

>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.12  E-value=0.14  Score=34.28  Aligned_cols=48  Identities=17%  Similarity=0.250  Sum_probs=35.9

Q ss_pred             ccCCCCCCC------CccccCcHHHHHHHHHHHHHHH-cCC--C---hHHHHHHHHHhhc
Q 031429           25 VRCTDCGSQ------SIEDSQADIAILLRKLIRDEIQ-AGK--T---DKEVYKKLEDDFG   72 (159)
Q Consensus        25 LRCpvCqnq------siadSna~~A~dmR~~Ir~~l~-~G~--S---d~eI~~~~v~RYG   72 (159)
                      -.|..|-+.      ++-..+--....-+..|..|+. .|.  |   .+.|++||++.||
T Consensus         9 ~~C~~CHs~~~i~~~~~v~~~r~t~~~W~~~V~~M~~~~Ga~l~~~e~~~Iv~YLa~~yG   68 (85)
T d1pbya1           9 NACAACHVQHEDGRWERIDAARKTPEGWDMTVTRMMRNHGVALEPEERAAIVRHLSDTRG   68 (85)
T ss_dssp             HTGGGTSCBCTTSCBTTGGGEEECHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhCCcccccchhhhccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence            379999873      3334455668889999999985 453  3   4568999999999

>d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Putative arsenical resistance operon repressor AF0168
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.20  E-value=0.23  Score=33.73  Aligned_cols=26  Identities=19%  Similarity=0.454  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHH
Q 031429           42 IAILLRKLIRDEIQAGKTDKEVYKKL   67 (159)
Q Consensus        42 ~A~dmR~~Ir~~l~~G~Sd~eI~~~~   67 (159)
                      ++..+|++|-+||..|+|.+||++-|
T Consensus        28 v~nPvRrkiLrmi~kgrsedEIm~~l   53 (89)
T d1y0ua_          28 VTNPVRRKILRMLDKGRSEEEIMQTL   53 (89)
T ss_dssp             HSCHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHccCCHHHHHHHh
Confidence            55678999999999999999999876