Citrus Sinensis ID: 031455

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTFD
Secondary Structure (PSIPRED)
ccccccccccEEEEccccccccccccccccHHHHcccHHHHHHHHccccccccccccccccccccccEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHccHHHHHHHHHccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHcEEccccEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mvsglinanpvvyekkerrarsasscvndeyaaeqidqqevfdhvrdikdpehpyslEELKVITEdaievddersyvrvtFTPTVEHCSMATVIGLCLRVKLmrslpprfkvdimvapgthaTEAAVNKQLNDKERVAAAlenpnlvdmvdeclaptfd
Flexible Loop (DISEMBL)
mvsglinanpvvyekkerrarsaSSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITedaievdderSYVRVTftptvehcsmATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAAlenpnlvdmvdeCLAPTFD
Low Complexity Region (SEG)
MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTFD
Disordered region (IsUnstruct)
***************************************EVFDHVRDIK***HPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAA*******************LVDMVD********
Disordered Region (DISOPRED)
*VSGLINANPVVYE****************YAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT**
Disordered Region (DISEMBL)
MVSGLINANPVVYE**************DEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTFD
Disordered Region (DISPRO)
****LINA****Y*******************AEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTFD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q9C9G6	157	MIP18 family protein At1g	yes	no	0.962	0.974	0.766	2e-66
Q9VTC4	156	MIP18 family protein CG79	yes	no	0.962	0.980	0.535	2e-44
Q9D187	163	Mitotic spindle-associate	yes	no	0.937	0.914	0.562	5e-44
Q9Y3D0	163	Mitotic spindle-associate	yes	no	0.937	0.914	0.549	1e-43
O62252	160	MIP18 family protein F45G	yes	no	0.937	0.931	0.532	2e-42
Q9SR25	149	MIP18 family protein At3g	no	no	0.911	0.973	0.548	3e-42
Q54QK1	163	MIP18 family protein FAM9	yes	no	0.924	0.901	0.474	8e-37
Q9H5X1	160	MIP18 family protein FAM9	no	no	0.723	0.718	0.567	3e-34
Q9DCL2	160	MIP18 family protein FAM9	no	no	0.723	0.718	0.584	7e-34
Q3T0U7	160	MIP18 family protein FAM9	no	no	0.723	0.718	0.584	9e-34

>sp|Q9C9G6|U195A_ARATH MIP18 family protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2

 Score =  250 bits (639), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/154 (76%), Positives = 138/154 (89%), Gaps = 1/154 (0%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           MVSGLIN NP++Y KKERR R+ +S + DE   E IDQ E+FDH+RDIKDPEHP +LE+L
Sbjct: 1   MVSGLINENPIIYPKKERRLRTDTS-ITDELTPEPIDQLEIFDHIRDIKDPEHPNTLEDL 59

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGT 120
           +V+TED++EVDDE SYVRVTFTPTVEHCSMATVIGLC+RVKL+RSLP R+K+DI VAPG+
Sbjct: 60  RVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKIDIRVAPGS 119

Query: 121 HATEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
           HATE A+NKQLNDKERVAAALENPNLV+MVDECL
Sbjct: 120 HATEDALNKQLNDKERVAAALENPNLVEMVDECL 153

May play a role in chromosome segregation through establishment of sister chromatid cohesion.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9VTC4|U195A_DROME MIP18 family protein CG7949 OS=Drosophila melanogaster GN=CG7949 PE=1 SV=1

 Score =  177 bits (450), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/155 (53%), Positives = 118/155 (76%), Gaps = 2/155 (1%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           M + + N NP VY++ + R  +A+    DE   +  D++E+FD +R+I DPEHP +LEEL
Sbjct: 1   MPTEIENINPNVYDRIKERVLTANE--EDENVPDPFDKREIFDLIRNINDPEHPLTLEEL 58

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGT 120
            V+ ED I ++D ++ V ++FTPT+ HCSMAT+IGL +RVKL+RSLPPRFKV + + PGT
Sbjct: 59  HVVQEDLIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKVTVEITPGT 118

Query: 121 HATEAAVNKQLNDKERVAAALENPNLVDMVDECLA 155
           HA+E AVNKQL DKERVAAALEN +L +++++C+A
Sbjct: 119 HASELAVNKQLADKERVAAALENNHLAEVINQCIA 153

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Drosophila melanogaster (taxid: 7227)

>sp|Q9D187|MIP18_MOUSE Mitotic spindle-associated MMXD complex subunit MIP18 OS=Mus musculus GN=Fam96b PE=2 SV=1

 Score =  176 bits (446), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/151 (56%), Positives = 113/151 (74%), Gaps = 2/151 (1%)

Query: 5   LINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVIT 64
           L NANP++YE+   R  +A     DE   + ID +E+FD +R I DPEHP +LEEL V+ 
Sbjct: 12  LENANPLIYERSGERPVTAGE--EDEEVPDSIDAREIFDLIRSINDPEHPLTLEELNVVE 69

Query: 65  EDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATE 124
           +  I+V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+D+ + PGTHA+E
Sbjct: 70  QVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASE 129

Query: 125 AAVNKQLNDKERVAAALENPNLVDMVDECLA 155
            AVNKQL DKERVAAALEN +L+++V++CL+
Sbjct: 130 HAVNKQLADKERVAAALENTHLLEVVNQCLS 160

As part of the mitotic spindle-associated MMXD complex it plays a role in chromosome segregation.

Mus musculus (taxid: 10090)

>sp|Q9Y3D0|MIP18_HUMAN Mitotic spindle-associated MMXD complex subunit MIP18 OS=Homo sapiens GN=FAM96B PE=1 SV=1

 Score =  175 bits (443), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/151 (54%), Positives = 113/151 (74%), Gaps = 2/151 (1%)

Query: 5   LINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVIT 64
           L NANP++Y++   R  +A     DE   + ID +E+FD +R I DPEHP +LEEL V+ 
Sbjct: 12  LENANPLIYQRSGERPVTAGE--EDEQVPDSIDAREIFDLIRSINDPEHPLTLEELNVVE 69

Query: 65  EDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATE 124
           +  ++V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+D+ + PGTHA+E
Sbjct: 70  QVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASE 129

Query: 125 AAVNKQLNDKERVAAALENPNLVDMVDECLA 155
            AVNKQL DKERVAAALEN +L+++V++CL+
Sbjct: 130 HAVNKQLADKERVAAALENTHLLEVVNQCLS 160

As part of the mitotic spindle-associated MMXD complex it plays a role in chromosome segregation.

Homo sapiens (taxid: 9606)

>sp|O62252|U195_CAEEL MIP18 family protein F45G2.10 OS=Caenorhabditis elegans GN=F45G2.10 PE=1 SV=1

 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/152 (53%), Positives = 112/152 (73%), Gaps = 3/152 (1%)

Query: 5   LINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVIT 64
           L NANP +++ K R  R  +    DE   + ID  E+FD +RDI DPEHPY+LE+L V+ 
Sbjct: 6   LDNANPTLFDSKPRH-RPVTGTERDESVEDPIDSWEIFDLIRDINDPEHPYTLEQLNVVQ 64

Query: 65  EDAIEV--DDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHA 122
           E+ I+V  D+E ++V+V FTPT+ HCSMAT+IGL +RVKL+RSL P+ KV + + PG+H+
Sbjct: 65  EELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKVSVSITPGSHS 124

Query: 123 TEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
           TE ++N+QL DKERVAAA+EN  L+  V+ECL
Sbjct: 125 TEESINRQLADKERVAAAMENQGLMHAVNECL 156

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9SR25|U195B_ARATH MIP18 family protein At3g09380 OS=Arabidopsis thaliana GN=At3g09380 PE=2 SV=2

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/155 (54%), Positives = 113/155 (72%), Gaps = 10/155 (6%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHP-YSLEE 59
           M S L N NP++Y K+ RR R+  S   DE+++         + +RDIKDPEHP  SLE+
Sbjct: 1   MDSVLTNKNPIIYPKRTRRYRTDQSST-DEFSST--------NRIRDIKDPEHPELSLED 51

Query: 60  LKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPG 119
           L V+TE+++EVDD +SYVR+TFTPT+ HC + T IGLC+ VKL++SLP RFKVD+ VAPG
Sbjct: 52  LNVLTEESVEVDDHKSYVRITFTPTLPHCHLPTHIGLCILVKLVQSLPARFKVDVRVAPG 111

Query: 120 THATEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
           +H  E  VNKQL DKERV AALENP LV ++++ +
Sbjct: 112 SHDKETTVNKQLGDKERVTAALENPELVALLNKMM 146

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54QK1|FA96B_DICDI MIP18 family protein FAM96B OS=Dictyostelium discoideum GN=fam96B PE=3 SV=2

 Score =  152 bits (384), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 111/158 (70%), Gaps = 11/158 (6%)

Query: 7   NANPVVY---------EKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSL 57
           N NPV+Y         E  E    S+   + +E   ++ D+QE+FD VR I DPEHP +L
Sbjct: 4   NPNPVIYVDNENCKSFEDNENSFNSSRYSI-EEDQIDEFDEQEIFDLVRSITDPEHPLTL 62

Query: 58  EELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117
           E+L V+  + + ++ E SY+ + FTPTV HCSMA +IGL ++ KL RSLP RFKVD++V 
Sbjct: 63  EQLNVVRIENVNINLENSYILLYFTPTVPHCSMANLIGLSIKEKLARSLPKRFKVDVIVT 122

Query: 118 PGTHATEAAVNKQLNDKERVAAALE-NPNLVDMVDECL 154
           PG+H++E++VNKQLNDKERV+AAL+ + +++ +V+EC+
Sbjct: 123 PGSHSSESSVNKQLNDKERVSAALDTSSSILTIVNECI 160

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9H5X1|FA96A_HUMAN MIP18 family protein FAM96A OS=Homo sapiens GN=FAM96A PE=1 SV=1

 Score =  144 bits (362), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 94/118 (79%), Gaps = 3/118 (2%)

Query: 40  EVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSMATVIGL 96
           EV+D +R I+DPE P +LEEL+V++E  +EV   ++E   V + FTPTV HCS+AT+IGL
Sbjct: 39  EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 98

Query: 97  CLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
           CLRVKL R LP + K++I ++ GTH+TE  +NKQ+NDKERVAAA+ENPNL ++V++C+
Sbjct: 99  CLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Homo sapiens (taxid: 9606)

>sp|Q9DCL2|FA96A_MOUSE MIP18 family protein FAM96A OS=Mus musculus GN=Fam96a PE=2 SV=1

 Score =  142 bits (359), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 69/118 (58%), Positives = 94/118 (79%), Gaps = 3/118 (2%)

Query: 40  EVFDHVRDIKDPEHPYSLEELKVITEDAIEVD--DERSY-VRVTFTPTVEHCSMATVIGL 96
           EV+D +R I+DPE P +LEEL+V+TE  +EV   +E  Y V + FTPTV HCS+AT+IGL
Sbjct: 39  EVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVIIKFTPTVPHCSLATLIGL 98

Query: 97  CLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
           CLRVKL R LP + K++I ++ GTH+TE  +NKQ+NDKERVAAA+ENPNL ++V++C+
Sbjct: 99  CLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Mus musculus (taxid: 10090)

>sp|Q3T0U7|FA96A_BOVIN MIP18 family protein FAM96A OS=Bos taurus GN=FAM96A PE=2 SV=1

 Score =  142 bits (358), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 69/118 (58%), Positives = 94/118 (79%), Gaps = 3/118 (2%)

Query: 40  EVFDHVRDIKDPEHPYSLEELKVITEDAIEVD--DERSY-VRVTFTPTVEHCSMATVIGL 96
           EV+D +R I+DPE P +LEEL+V+TE  +EV   +E  Y V + FTPTV HCS+AT+IGL
Sbjct: 39  EVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVIIRFTPTVPHCSLATLIGL 98

Query: 97  CLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
           CLRVKL R LP + K++I ++ GTH+TE  +NKQ+NDKERVAAA+ENPNL ++V++C+
Sbjct: 99  CLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
224071405	159	predicted protein [Populus trichocarpa]	0.993	0.993	0.879	2e-75
225440566	158	PREDICTED: MIP18 family protein At1g6831	0.987	0.993	0.860	1e-74
358248458	159	uncharacterized protein LOC100802864 [Gl	1.0	1.0	0.830	5e-73
449436858	161	PREDICTED: MIP18 family protein At1g6831	0.987	0.975	0.826	3e-70
356497617	174	PREDICTED: MIP18 family protein At1g6831	1.0	0.913	0.764	4e-70
194692926	158	unknown [Zea mays] gi|195609216|gb|ACG26	0.993	1.0	0.792	6e-70
115460264	158	Os04g0595200 [Oryza sativa Japonica Grou	0.987	0.993	0.810	1e-69
255647509	153	unknown [Glycine max]	0.962	1.0	0.830	3e-69
357484839	168	Protein FAM96B [Medicago truncatula] gi|	1.0	0.946	0.779	1e-68
242077022	158	hypothetical protein SORBIDRAFT_06g02725	0.993	1.0	0.773	4e-68

>gi|224071405|ref|XP_002303444.1| predicted protein [Populus trichocarpa] gi|222840876|gb|EEE78423.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/158 (87%), Positives = 147/158 (93%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           MVSGLINANPV+YEKKERR RSA S  +DE+A E IDQ EVFDH+RDIKDPEHPYSLEEL
Sbjct: 1   MVSGLINANPVIYEKKERRVRSAPSVGDDEHAVEPIDQLEVFDHIRDIKDPEHPYSLEEL 60

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGT 120
           KVITEDAIEVDD  SYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLP R+KVDI VAPGT
Sbjct: 61  KVITEDAIEVDDNHSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPQRYKVDIRVAPGT 120

Query: 121 HATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTF 158
           HATE+AVNKQLNDKERVAAALENPNLVDMVDECLAP++
Sbjct: 121 HATESAVNKQLNDKERVAAALENPNLVDMVDECLAPSY 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440566|ref|XP_002276610.1| PREDICTED: MIP18 family protein At1g68310-like [Vitis vinifera]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 136/158 (86%), Positives = 149/158 (94%), Gaps = 1/158 (0%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           MVSGLINANPV+Y+KKER+ R A  C +DEYA E +DQQE+FDH+RDIKDPEHPYSLEEL
Sbjct: 1   MVSGLINANPVIYQKKERQVRIAP-CDSDEYAVEPVDQQEIFDHIRDIKDPEHPYSLEEL 59

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGT 120
           KVITEDAIEVDD+RSYVRVTFTPTVEHCSMATVIGLCLRVKL+RSLP R+KVDI VAPGT
Sbjct: 60  KVITEDAIEVDDKRSYVRVTFTPTVEHCSMATVIGLCLRVKLLRSLPSRYKVDIKVAPGT 119

Query: 121 HATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTF 158
           HATEAAVNKQLNDKERVAAALENPNL+DMVDECLAP++
Sbjct: 120 HATEAAVNKQLNDKERVAAALENPNLLDMVDECLAPSY 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248458|ref|NP_001239885.1| uncharacterized protein LOC100802864 [Glycine max] gi|255637195|gb|ACU18928.1| unknown [Glycine max]

 Score =  278 bits (712), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 132/159 (83%), Positives = 148/159 (93%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           MVS LINANP++YEKKERR R+A S  +DEYA E IDQQEVFDH+RDIKDPEHPYSLEEL
Sbjct: 1   MVSELINANPIIYEKKERRPRTAPSAPHDEYAVELIDQQEVFDHIRDIKDPEHPYSLEEL 60

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGT 120
           KVITE+A+EVDD+R+YVRV FTPTVEHCSMATVIGLCLRVKLMRSLP R+KVDI VAPG+
Sbjct: 61  KVITEEAVEVDDQRNYVRVMFTPTVEHCSMATVIGLCLRVKLMRSLPSRYKVDIRVAPGS 120

Query: 121 HATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTFD 159
           HATEAAVNKQLNDKERVAAALEN NL++MVD+CLAP++D
Sbjct: 121 HATEAAVNKQLNDKERVAAALENSNLLNMVDDCLAPSYD 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436858|ref|XP_004136209.1| PREDICTED: MIP18 family protein At1g68310-like [Cucumis sativus] gi|449508040|ref|XP_004163200.1| PREDICTED: MIP18 family protein At1g68310-like [Cucumis sativus]

 Score =  269 bits (687), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 146/161 (90%), Gaps = 4/161 (2%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVR---DIKDPEHPYSL 57
           MVSGLINANPVVY+KKERRAR+ + C +DEYA E IDQ E+FD +    DIKDPEHPYSL
Sbjct: 1   MVSGLINANPVVYQKKERRARN-TPCDSDEYAVESIDQLEIFDILSLFLDIKDPEHPYSL 59

Query: 58  EELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117
           EELKVITEDA+EVDD  SYVRVTFTPTVEHCSMAT+IGLCLRVKLMRSLP R+KVDI VA
Sbjct: 60  EELKVITEDAVEVDDGLSYVRVTFTPTVEHCSMATIIGLCLRVKLMRSLPSRYKVDIRVA 119

Query: 118 PGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTF 158
           PG+HATEAAVNKQLNDKERVAAALENPNL+DMVDECLAP++
Sbjct: 120 PGSHATEAAVNKQLNDKERVAAALENPNLLDMVDECLAPSY 160

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497617|ref|XP_003517656.1| PREDICTED: MIP18 family protein At1g68310-like [Glycine max]

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 133/174 (76%), Positives = 149/174 (85%), Gaps = 15/174 (8%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFD---------------HV 45
           MV+ LINANP++YEKKERRA SA S  +DEYA E IDQQEVFD               H+
Sbjct: 1   MVTELINANPIIYEKKERRAPSAPSAPHDEYAVEPIDQQEVFDIVDNCNFNIFLTFTNHI 60

Query: 46  RDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRS 105
           RDIKDPEHPYSLEELKVITE+A+EVDD+R+YVRVTFTPTVEHCSMATVIGLCLRVKLMRS
Sbjct: 61  RDIKDPEHPYSLEELKVITEEAVEVDDQRNYVRVTFTPTVEHCSMATVIGLCLRVKLMRS 120

Query: 106 LPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTFD 159
           LP R+KVDI VAPG+HATEAAVNKQLNDKERVAAALENPNL++MVD+CLA ++D
Sbjct: 121 LPSRYKVDIRVAPGSHATEAAVNKQLNDKERVAAALENPNLLNMVDDCLASSYD 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194692926|gb|ACF80547.1| unknown [Zea mays] gi|195609216|gb|ACG26438.1| hypothetical protein [Zea mays] gi|195643750|gb|ACG41343.1| hypothetical protein [Zea mays] gi|413919387|gb|AFW59319.1| hypothetical protein ZEAMMB73_301781 [Zea mays]

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 126/159 (79%), Positives = 145/159 (91%), Gaps = 1/159 (0%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           M  GLINANP+++EKKERRAR A     DE AAE IDQ E+FDH+RDIKDPEHPYSLE+L
Sbjct: 1   MAMGLINANPIIHEKKERRARQAPE-TTDENAAEPIDQLEIFDHIRDIKDPEHPYSLEQL 59

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGT 120
            V+TED+IE++DE +YVRVTFTPTVEHCSMAT+IGLC+RVKL+RSLPPR+KVDI VAPG+
Sbjct: 60  NVVTEDSIELNDESNYVRVTFTPTVEHCSMATIIGLCIRVKLVRSLPPRYKVDIRVAPGS 119

Query: 121 HATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTFD 159
           HATEAAVNKQLNDKERVAAALENPNL+DMV+ECL+PTFD
Sbjct: 120 HATEAAVNKQLNDKERVAAALENPNLLDMVEECLSPTFD 158

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115460264|ref|NP_001053732.1| Os04g0595200 [Oryza sativa Japonica Group] gi|113565303|dbj|BAF15646.1| Os04g0595200 [Oryza sativa Japonica Group]

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/158 (81%), Positives = 143/158 (90%), Gaps = 1/158 (0%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           MV GLINANPVVYEKKERR+R A     DE AAE IDQ E+FDH+RDIKDPEHPYSLEEL
Sbjct: 1   MVVGLINANPVVYEKKERRSRQAPE-TTDENAAEAIDQLEIFDHIRDIKDPEHPYSLEEL 59

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGT 120
            V+TED++E++DE S+VRVTFTPTVE CSMATVIGLCLRVKLMRSLPPR+KVDI VAPG+
Sbjct: 60  NVVTEDSVEINDELSHVRVTFTPTVERCSMATVIGLCLRVKLMRSLPPRYKVDIRVAPGS 119

Query: 121 HATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTF 158
           HATE AVNKQLNDKERVAAALENPNL+D+V+ECL+PTF
Sbjct: 120 HATETAVNKQLNDKERVAAALENPNLLDIVEECLSPTF 157

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647509|gb|ACU24218.1| unknown [Glycine max]

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/153 (83%), Positives = 141/153 (92%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           MVS LINANP++YEKKERR R+A S  +DEYA E IDQQEVFDH+RDIKDPEHPYSLEEL
Sbjct: 1   MVSELINANPIIYEKKERRPRTAPSAPHDEYAVELIDQQEVFDHIRDIKDPEHPYSLEEL 60

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGT 120
           KVITE+A+EVDD+R+YVR  FTPTVEHCSMATVIGLCLRVKLMRSLP R+KVDI VAPG+
Sbjct: 61  KVITEEAVEVDDQRNYVRGMFTPTVEHCSMATVIGLCLRVKLMRSLPSRYKVDIRVAPGS 120

Query: 121 HATEAAVNKQLNDKERVAAALENPNLVDMVDEC 153
           HATEAAVNKQLNDKERVAAALEN NL++MVD+C
Sbjct: 121 HATEAAVNKQLNDKERVAAALENSNLLNMVDDC 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484839|ref|XP_003612707.1| Protein FAM96B [Medicago truncatula] gi|355514042|gb|AES95665.1| Protein FAM96B [Medicago truncatula]

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 146/168 (86%), Gaps = 9/168 (5%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVR---------DIKDP 51
           MVSGLIN NPV+YE+K+R+ RS  S   DEY  E IDQQE+FD +          DIKDP
Sbjct: 1   MVSGLINENPVIYERKQRQQRSTQSLPADEYTVEPIDQQEIFDILFFFFLNSIFLDIKDP 60

Query: 52  EHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFK 111
           EHPYSLEELKVITE+A+EVDD++SYVRVTFTPTVEHCSMAT+IGLCLRVKL+RSLPPR+K
Sbjct: 61  EHPYSLEELKVITEEAVEVDDQKSYVRVTFTPTVEHCSMATIIGLCLRVKLLRSLPPRYK 120

Query: 112 VDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTFD 159
           VDI VAPG+HATEAAVNKQLNDKERVAAALENPNLVDMVDECLAP+FD
Sbjct: 121 VDIRVAPGSHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPSFD 168

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242077022|ref|XP_002448447.1| hypothetical protein SORBIDRAFT_06g027250 [Sorghum bicolor] gi|241939630|gb|EES12775.1| hypothetical protein SORBIDRAFT_06g027250 [Sorghum bicolor]

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 144/159 (90%), Gaps = 1/159 (0%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           M  GLINANP+++EKKERR R A     DE AAE IDQ E+FDH+RDIKDPEHPYSLE+L
Sbjct: 1   MAMGLINANPIIHEKKERRIRPAPETT-DENAAEPIDQLEIFDHIRDIKDPEHPYSLEQL 59

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGT 120
            V+TE++IE++DE ++VRVTFTPTVEHCSMAT+IGLC+RVKL+RSLPPR+KVDI VAPG+
Sbjct: 60  NVVTENSIELNDESNHVRVTFTPTVEHCSMATIIGLCIRVKLVRSLPPRYKVDIRVAPGS 119

Query: 121 HATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTFD 159
           HATEAAVNKQLNDKERVAAALENPNL+DMV+ECL+PTFD
Sbjct: 120 HATEAAVNKQLNDKERVAAALENPNLLDMVEECLSPTFD 158

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2199362	159	AE7 "AS1/2 ENHANCER7" [Arabido	0.962	0.962	0.737	4e-58
TAIR|locus:4010713823	154	AT3G50845 "AT3G50845" [Arabido	0.937	0.967	0.577	2.1e-45
FB|FBgn0036107	156	CG7949 [Drosophila melanogaste	0.962	0.980	0.535	2.5e-42
UNIPROTKB|E1BC22	163	FAM96B "Uncharacterized protei	0.962	0.938	0.557	2.5e-42
MGI|MGI:1915773	163	Fam96b "family with sequence s	0.943	0.920	0.562	5.2e-42
RGD|1585802	165	Fam96b "family with sequence s	0.943	0.909	0.562	5.2e-42
ZFIN|ZDB-GENE-040718-148	159	fam96b "family with sequence s	0.937	0.937	0.556	6.6e-42
UNIPROTKB|Q9Y3D0	163	FAM96B "Mitotic spindle-associ	0.943	0.920	0.549	1.1e-41
UNIPROTKB|O62252	160	F45G2.10 "MIP18 family protein	0.937	0.931	0.532	9.6e-41
UNIPROTKB|E1BWV0	161	FAM96B "Uncharacterized protei	0.937	0.925	0.543	1.6e-40

TAIR|locus:2199362 AE7 "AS1/2 ENHANCER7" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 115/156 (73%), Positives = 136/156 (87%)

Query:     1 MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVR--DIKDPEHPYSLE 58
             MVSGLIN NP++Y KKERR R+ +S + DE   E IDQ E+FD +   +IKDPEHP +LE
Sbjct:     1 MVSGLINENPIIYPKKERRLRTDTS-ITDELTPEPIDQLEIFDILSSSNIKDPEHPNTLE 59

Query:    59 ELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAP 118
             +L+V+TED++EVDDE SYVRVTFTPTVEHCSMATVIGLC+RVKL+RSLP R+K+DI VAP
Sbjct:    60 DLRVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKIDIRVAP 119

Query:   119 GTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
             G+HATE A+NKQLNDKERVAAALENPNLV+MVDECL
Sbjct:   120 GSHATEDALNKQLNDKERVAAALENPNLVEMVDECL 155

GO:0005634 "nucleus" evidence=ISM

GO:0010209 "vacuolar sorting signal binding" evidence=IDA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

TAIR|locus:4010713823 AT3G50845 "AT3G50845" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 89/154 (57%), Positives = 116/154 (75%)

Query:     1 MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
             M  GLINANPVV  KKE   R       D+Y  + +D  E++D+VRDI+DPEHPY+LE+L
Sbjct:     1 MTLGLINANPVVQAKKEGLVRR-----EDQYRDDGVDPLEIYDYVRDIRDPEHPYTLEQL 55

Query:    61 KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGT 120
             +V++E+++ VDD+   + +TFTPT++HCSMA +IGLCLR KL   L   +KVDI V+PG+
Sbjct:    56 RVVSEESVTVDDKLDRILITFTPTIQHCSMANIIGLCLRAKLKECLQLHYKVDIRVSPGS 115

Query:   121 HATEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
             HA E +VNKQLNDKERV AALENPNL  +VDEC+
Sbjct:   116 HADEVSVNKQLNDKERVVAALENPNLRQLVDECI 149

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0036107 CG7949 [Drosophila melanogaster (taxid:7227)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 83/155 (53%), Positives = 118/155 (76%)

Query:     1 MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
             M + + N NP VY++ + R  +A+    DE   +  D++E+FD +R+I DPEHP +LEEL
Sbjct:     1 MPTEIENINPNVYDRIKERVLTANE--EDENVPDPFDKREIFDLIRNINDPEHPLTLEEL 58

Query:    61 KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGT 120
              V+ ED I ++D ++ V ++FTPT+ HCSMAT+IGL +RVKL+RSLPPRFKV + + PGT
Sbjct:    59 HVVQEDLIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKVTVEITPGT 118

Query:   121 HATEAAVNKQLNDKERVAAALENPNLVDMVDECLA 155
             HA+E AVNKQL DKERVAAALEN +L +++++C+A
Sbjct:   119 HASELAVNKQLADKERVAAALENNHLAEVINQCIA 153

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BC22 FAM96B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 87/156 (55%), Positives = 116/156 (74%)

Query:     1 MVSGLI-NANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEE 59
             M  GL+ NANP++YE+   R  SA     DE   + ID +E+FD +R I DPEHP +LEE
Sbjct:     7 MGGGLLENANPLIYERSGDRPVSAGE--EDEQVPDSIDAREIFDLIRSINDPEHPLTLEE 64

Query:    60 LKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPG 119
             L V+ +  ++V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+D+ + PG
Sbjct:    65 LNVVEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPG 124

Query:   120 THATEAAVNKQLNDKERVAAALENPNLVDMVDECLA 155
             THA+E AVNKQL DKERVAAALEN +L+++V++CL+
Sbjct:   125 THASEHAVNKQLADKERVAAALENTHLLEVVNQCLS 160

GO:0097361 "CIA complex" evidence=IEA

GO:0071817 "MMXD complex" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1915773 Fam96b "family with sequence similarity 96, member B" [Mus musculus (taxid:10090)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 86/153 (56%), Positives = 115/153 (75%)

Query:     4 GLI-NANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKV 62
             GL+ NANP++YE+   R  +A     DE   + ID +E+FD +R I DPEHP +LEEL V
Sbjct:    10 GLLENANPLIYERSGERPVTAGE--EDEEVPDSIDAREIFDLIRSINDPEHPLTLEELNV 67

Query:    63 ITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHA 122
             + +  I+V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+D+ + PGTHA
Sbjct:    68 VEQVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHA 127

Query:   123 TEAAVNKQLNDKERVAAALENPNLVDMVDECLA 155
             +E AVNKQL DKERVAAALEN +L+++V++CL+
Sbjct:   128 SEHAVNKQLADKERVAAALENTHLLEVVNQCLS 160

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005819 "spindle" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0071817 "MMXD complex" evidence=ISO

GO:0097361 "CIA complex" evidence=ISO

RGD|1585802 Fam96b "family with sequence similarity 96, member B" [Rattus norvegicus (taxid:10116)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 86/153 (56%), Positives = 115/153 (75%)

Query:     4 GLI-NANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKV 62
             GL+ NANP++YE+   R  +A     DE   + ID +E+FD +R I DPEHP +LEEL V
Sbjct:    12 GLLENANPLIYERSGERPVTAGE--EDEEVPDSIDAREIFDLIRSINDPEHPLTLEELNV 69

Query:    63 ITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHA 122
             + +  I+V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+D+ + PGTHA
Sbjct:    70 VEQVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHA 129

Query:   123 TEAAVNKQLNDKERVAAALENPNLVDMVDECLA 155
             +E AVNKQL DKERVAAALEN +L+++V++CL+
Sbjct:   130 SEHAVNKQLADKERVAAALENTHLLEVVNQCLS 162

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005819 "spindle" evidence=ISO

GO:0007059 "chromosome segregation" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0071817 "MMXD complex" evidence=IEA;ISO

GO:0097361 "CIA complex" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

ZFIN|ZDB-GENE-040718-148 fam96b "family with sequence similarity 96, member B" [Danio rerio (taxid:7955)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 84/151 (55%), Positives = 115/151 (76%)

Query:     5 LINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVIT 64
             L NANP+++++   R  +++    DE  A+ ID +E+FD +R I DPEHP SLEEL V+ 
Sbjct:     7 LENANPLIFQRSGERLLTSTD--EDEDVADPIDVREIFDLIRSINDPEHPLSLEELNVVE 64

Query:    65 EDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATE 124
             +  + V+DE S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+D+ + PGTHA+E
Sbjct:    65 QVRVNVNDEESTVSVEFTPTIPHCSMATLIGLSIKVKLLRSLPDRFKIDVHITPGTHASE 124

Query:   125 AAVNKQLNDKERVAAALENPNLVDMVDECLA 155
              AVNKQL DKERVAAALEN  L+++V++CL+
Sbjct:   125 DAVNKQLADKERVAAALENSQLLEVVNQCLS 155

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9Y3D0 FAM96B "Mitotic spindle-associated MMXD complex subunit MIP18" [Homo sapiens (taxid:9606)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 84/153 (54%), Positives = 115/153 (75%)

Query:     4 GLI-NANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKV 62
             GL+ NANP++Y++   R  +A     DE   + ID +E+FD +R I DPEHP +LEEL V
Sbjct:    10 GLLENANPLIYQRSGERPVTAGE--EDEQVPDSIDAREIFDLIRSINDPEHPLTLEELNV 67

Query:    63 ITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHA 122
             + +  ++V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+D+ + PGTHA
Sbjct:    68 VEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHA 127

Query:   123 TEAAVNKQLNDKERVAAALENPNLVDMVDECLA 155
             +E AVNKQL DKERVAAALEN +L+++V++CL+
Sbjct:   128 SEHAVNKQLADKERVAAALENTHLLEVVNQCLS 160

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0071817 "MMXD complex" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0097361 "CIA complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|O62252 F45G2.10 "MIP18 family protein F45G2.10" [Caenorhabditis elegans (taxid:6239)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 81/152 (53%), Positives = 112/152 (73%)

Query:     5 LINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVIT 64
             L NANP +++ K R  R  +    DE   + ID  E+FD +RDI DPEHPY+LE+L V+ 
Sbjct:     6 LDNANPTLFDSKPRH-RPVTGTERDESVEDPIDSWEIFDLIRDINDPEHPYTLEQLNVVQ 64

Query:    65 EDAIEV--DDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHA 122
             E+ I+V  D+E ++V+V FTPT+ HCSMAT+IGL +RVKL+RSL P+ KV + + PG+H+
Sbjct:    65 EELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKVSVSITPGSHS 124

Query:   123 TEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
             TE ++N+QL DKERVAAA+EN  L+  V+ECL
Sbjct:   125 TEESINRQLADKERVAAAMENQGLMHAVNECL 156

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1BWV0 FAM96B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 82/151 (54%), Positives = 113/151 (74%)

Query:     5 LINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVIT 64
             L NANP++Y +   R  +A     D+   + ID +E+FD +R I DPEHP +LEEL V+ 
Sbjct:    10 LENANPLIYRRSGERPVTARE--EDDELPDSIDDREIFDLIRSINDPEHPLTLEELNVVE 67

Query:    65 EDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATE 124
             +  ++V+D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+D+ + PGTHA+E
Sbjct:    68 QVRVKVNDAESTVAVEFTPTIPHCSMATLIGLSIKVKLIRSLPERFKMDVHITPGTHASE 127

Query:   125 AAVNKQLNDKERVAAALENPNLVDMVDECLA 155
              AVNKQL DKERVAAALEN +L+++V++CL+
Sbjct:   128 HAVNKQLADKERVAAALENSHLLEVVNQCLS 158

GO:0007059 "chromosome segregation" evidence=IEA

GO:0071817 "MMXD complex" evidence=IEA

GO:0097361 "CIA complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VTC4	U195A_DROME	No assigned EC number	0.5354	0.9622	0.9807	yes	no
Q9UTL0	YIVG_SCHPO	No assigned EC number	0.4545	0.9748	0.8659	yes	no
Q54QK1	FA96B_DICDI	No assigned EC number	0.4746	0.9245	0.9018	yes	no
Q9C9G6	U195A_ARATH	No assigned EC number	0.7662	0.9622	0.9745	yes	no
O62252	U195_CAEEL	No assigned EC number	0.5328	0.9371	0.9312	yes	no
Q9Y3D0	MIP18_HUMAN	No assigned EC number	0.5496	0.9371	0.9141	yes	no
Q9D187	MIP18_MOUSE	No assigned EC number	0.5629	0.9371	0.9141	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_kg.C_LG_III0027 hypothetical protein (159 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
COG5133	181	COG5133, COG5133, Uncharacterized conserved protei	3e-48

>gnl|CDD|227462 COG5133, COG5133, Uncharacterized conserved protein [Function unknown]

 Score =  153 bits (389), Expect = 3e-48
 Identities = 71/146 (48%), Positives = 97/146 (66%), Gaps = 5/146 (3%)

Query: 15  KKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDD-- 72
            +ER    + + V      + IDQQE++D + DI+DPEHP +LE+L V++ + I V D  
Sbjct: 33  LEERHPIESENGVLQNEEPDLIDQQEIYDLIADIRDPEHPLTLEQLSVVSLEDISVPDGI 92

Query: 73  ---ERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNK 129
                  V+V  TPT+ HCSMAT+IGLC+RV+L R LPPRF V + +  GTH +E  VNK
Sbjct: 93  APNVIRCVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRFHVQVHIKKGTHISERQVNK 152

Query: 130 QLNDKERVAAALENPNLVDMVDECLA 155
           QLNDKERVAAA EN  L+D++++ L 
Sbjct: 153 QLNDKERVAAACENEQLLDVMEKMLP 178

Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
KOG3381	161	consensus Uncharacterized conserved protein [Funct	100.0
COG5133	181	Uncharacterized conserved protein [Function unknow	99.92
COG2151	111	PaaD Predicted metal-sulfur cluster biosynthetic e	99.89
TIGR03406	174	FeS_long_SufT probable FeS assembly SUF system pro	99.76
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	99.74
TIGR02945	99	SUF_assoc FeS assembly SUF system protein. Members	99.59
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	99.54
PRK11670	369	antiporter inner membrane protein; Provisional	99.22
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	89.86
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	88.57
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	87.57
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	80.23

>KOG3381 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.3e-33  Score=218.64  Aligned_cols=153  Identities=64%  Similarity=1.071  Sum_probs=136.7

Q ss_pred             CCCcCCCceEeecccccccccCCCCCCccccCcCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCC---C--ceE
Q 031455            3 SGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDE---R--SYV   77 (159)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~---~--~~V   77 (159)
                      +++.|.||.||.+.+++.+...+-+ |+-..+..+.+.+++.++.|.|||.|.++-+|+.|+.+.|+|.+.   .  ..|
T Consensus         2 s~l~N~np~v~~~~~~~~r~~~s~~-d~~~~~~~~~~~~~dlir~I~DPEhP~TLeqL~VV~ee~v~V~d~~~~~~~s~V   80 (161)
T KOG3381|consen    2 SGLQNENPLVYPTRSRERRVTASEE-DELLPDSEDAEEIFDLIRDIRDPEHPLTLEQLNVVSEEGVEVDDPNVGDEESYV   80 (161)
T ss_pred             CccccCCcccccccccccccccccc-ccccCcchhHHHHHHHHhccCCCCCCccHHHccceeecceEeecCCCCCcceEE
Confidence            4689999999998777655544222 333447788999999999999999999999999999999998752   1  489


Q ss_pred             EEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEcCCCCcCHHHHHHHhcchhhhhcccCCccHHHHHhhhcCC
Q 031455           78 RVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAP  156 (159)
Q Consensus        78 ~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~~~~h~~~~~lnkql~dkErv~aa~e~~~l~~~~~~~~~~  156 (159)
                      .|.||||.|+|+++..|+.+|+-+|.+++|...+|+|.|+.++|.+++++|||+||||||+||+||+.|+.++++|+.-
T Consensus        81 ~i~ftPTipHCSmaTlIGLcIrVkl~RsLp~rfkvdV~I~~GtH~tE~~vNKQLnDKERVaAA~EN~~L~~~v~~cl~~  159 (161)
T KOG3381|consen   81 RITFTPTIPHCSMATLIGLCIRVKLLRSLPPRFKVDVYIKPGTHATEEAVNKQLNDKERVAAALENPNLLEVVNKCLPA  159 (161)
T ss_pred             EEEeccCCCcchHHhhhhheeeeeeeecCCCceeEEEEEcCCCcCCHHHHHhhhccHHHHHHHhcChHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999863

>COG5133 Uncharacterized conserved protein [Function unknown]

Probab=99.92  E-value=4.6e-25  Score=170.90  Aligned_cols=125  Identities=54%  Similarity=0.897  Sum_probs=117.7

Q ss_pred             cccCcCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCC-----ceEEEEEEeCCCCCchHHHHHHHHHHHHHhh
Q 031455           31 YAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDER-----SYVRVTFTPTVEHCSMATVIGLCLRVKLMRS  105 (159)
Q Consensus        31 ~~~~~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~-----~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~  105 (159)
                      ...+.+++++|++.++.|.|||.|.++-.||.|.-++|.|.++.     ..|.|.+|||.|+|++...|+..|+.+|.++
T Consensus        49 ee~d~id~qeiydLia~I~DPEHPltL~QLsVV~lEdi~v~D~~~~n~i~~v~v~itPTIpHCSmatlIGLcIrvrleR~  128 (181)
T COG5133          49 EEPDLIDQQEIYDLIADIRDPEHPLTLEQLSVVSLEDISVPDGIAPNVIRCVKVVITPTIPHCSMATLIGLCIRVRLERH  128 (181)
T ss_pred             CCCCCcCHHHHHHHHHhcCCCCCCccHhhcceeeeccccccCCCCCCeeEEEEEEeccCCCchhHHHHhhhheeeeehhc
Confidence            45577999999999999999999999999999999899997652     3699999999999999999999999999999


Q ss_pred             CCCceEEEEEEcCCCCcCHHHHHHHhcchhhhhcccCCccHHHHHhhhcC
Q 031455          106 LPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLA  155 (159)
Q Consensus       106 v~~v~~V~V~i~~~~h~~~~~lnkql~dkErv~aa~e~~~l~~~~~~~~~  155 (159)
                      +|+-+.|+|.++.++|..+.++|||+||||||+||-||..|..++++|+.
T Consensus       129 lpprF~v~v~ikkGtH~se~qvNKQLnDKeRVaAAcENEqLL~v~~kml~  178 (181)
T COG5133         129 LPPRFHVQVHIKKGTHISERQVNKQLNDKERVAAACENEQLLDVMEKMLP  178 (181)
T ss_pred             CCCceeEEEEEecCCcccHHHHhhhhchHHHHHHhhchHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999974

>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]

Probab=99.89  E-value=5.2e-23  Score=153.33  Aligned_cols=96  Identities=21%  Similarity=0.386  Sum_probs=87.0

Q ss_pred             cccCcCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeC-CCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCc
Q 031455           31 YAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDD-ERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPR  109 (159)
Q Consensus        31 ~~~~~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~-~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v  109 (159)
                      ..+.+.++++|+++|++|.|||+|++||+|||||+  |.+++ ++ .++|+||+|+||||+...|..++++++ +.++|+
T Consensus         7 ~~~~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~--v~i~~~~~-~v~v~mtlT~~gCP~~~~i~~~v~~al-~~~~~v   82 (111)
T COG2151           7 EEAIKVTLEDILEALKTVIDPEIGIDIVDLGLVYE--VDIDDVDG-LVKVKMTLTSPGCPLAEVIADQVEAAL-EEIPGV   82 (111)
T ss_pred             cchhhhhHHHHHHHhhcCCCcccceeeEeeccEEE--EEEecCCc-eEEEEEecCCCCCCccHHHHHHHHHHH-HhcCCc
Confidence            34456779999999999999999999999999999  99987 54 899999999999999999999999999 889999


Q ss_pred             eEEEEEEcCCCCcCHHHHHHH
Q 031455          110 FKVDIMVAPGTHATEAAVNKQ  130 (159)
Q Consensus       110 ~~V~V~i~~~~h~~~~~lnkq  130 (159)
                      ..++|++++.++|+...+...
T Consensus        83 ~~v~V~l~~~p~Wt~~~ms~e  103 (111)
T COG2151          83 EDVEVELTLSPPWTPDRMSEE  103 (111)
T ss_pred             ceEEEEEEEcCCCchhhcCHH
Confidence            999999999999988765543

>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT

Probab=99.76  E-value=4.3e-18  Score=135.65  Aligned_cols=97  Identities=20%  Similarity=0.319  Sum_probs=87.4

Q ss_pred             ccccCcCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeC---CCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhC
Q 031455           30 EYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDD---ERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSL  106 (159)
Q Consensus        30 ~~~~~~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~---~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v  106 (159)
                      +++....++++|+++|++|+||+++.+|++||+||+  |.+++   ++.+|.|+|++|+|+|++...|..+++.+| ..+
T Consensus        67 ~~~~~~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~--I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL-~~l  143 (174)
T TIGR03406        67 ENADGEDNEDQVWEQLRTVYDPEIPVNIVDLGLVYG--CRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKV-LAV  143 (174)
T ss_pred             cCccccccHHHHHHHHcCCCCCCCCCChHHcCCeEE--EEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHH-HhC
Confidence            446677889999999999999999999999999999  99986   323799999999999999999999999999 789


Q ss_pred             CCceEEEEEEcCCCCcCHHHHHH
Q 031455          107 PPRFKVDIMVAPGTHATEAAVNK  129 (159)
Q Consensus       107 ~~v~~V~V~i~~~~h~~~~~lnk  129 (159)
                      +++.+|+|++.++++|.++-+..
T Consensus       144 ~gV~~V~V~l~~dp~W~~~~~s~  166 (174)
T TIGR03406       144 PNVDEVEVELVFDPPWSREMMSE  166 (174)
T ss_pred             CCceeEEEEEEecCCCChHHCCH
Confidence            99999999999999998865443

The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=99.74  E-value=9.1e-18  Score=114.49  Aligned_cols=72  Identities=26%  Similarity=0.425  Sum_probs=64.6

Q ss_pred             HHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEE
Q 031455           38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDI  114 (159)
Q Consensus        38 ~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V  114 (159)
                      +++|+++|++|.||++|.||+++|||++  |.++++  +|+|+|++++|+||+...|..+++.+| ++++|+.+|+|
T Consensus         1 k~~V~~aL~~v~dP~~~~~iv~~g~V~~--i~i~~~--~V~v~l~l~~~~~~~~~~l~~~i~~~l-~~l~gv~~V~V   72 (72)
T PF01883_consen    1 KQAVRDALKQVKDPELGKDIVELGMVRD--ISIEGG--KVSVSLELPTPACPAAEPLREEIREAL-KALPGVKSVKV   72 (72)
T ss_dssp             HHHHHHHHTT-BETTTSSBTTTTTSEEE--EEECTC--EEEEEE--SSTTHTTHHHHHHHHHHHH-HTSTT-SEEEE
T ss_pred             CHHHHHHHhCCCCCCCCCCHHHcCCeeE--EEEECC--EEEEEEEECCCCchHHHHHHHHHHHHH-HhCCCCceEeC
Confidence            5899999999999999999999999999  999875  999999999999999999999999999 69999988876

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>TIGR02945 SUF_assoc FeS assembly SUF system protein

Probab=99.59  E-value=1.2e-14  Score=104.64  Aligned_cols=90  Identities=23%  Similarity=0.359  Sum_probs=81.3

Q ss_pred             HHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455           38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA  117 (159)
Q Consensus        38 ~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~  117 (159)
                      +++|+++|++|.||+++.+|+++|+|++  |.+.+++ .|+|++++++|+||....+...++.+| ..++|+.+|+|++.
T Consensus         3 ~~~I~~~L~~v~dP~l~~~lv~~g~V~~--i~v~~~~-~v~i~l~l~~p~~~~~~~l~~~i~~al-~~l~gv~~v~v~i~   78 (99)
T TIGR02945         3 KDAVIEALKTVYDPEIPVNIYELGLIYD--IDVDDDG-HVDIQMTLTAPNCPVAGSMPGEVENAV-RAVPGVGSVTVELV   78 (99)
T ss_pred             HHHHHHHHcCCCCCCCCCCeecCCCeeE--EEECCCC-eEEEEEEECCCCCChHHHHHHHHHHHH-HhCCCCceEEEEEE
Confidence            4789999999999999999999999999  9998522 899999999999999999999999999 78899999999999


Q ss_pred             CCCCcCHHHHHHHh
Q 031455          118 PGTHATEAAVNKQL  131 (159)
Q Consensus       118 ~~~h~~~~~lnkql  131 (159)
                      ....|+.+-+++..
T Consensus        79 ~~~~~~~~~~~~~~   92 (99)
T TIGR02945        79 WDPPWTPERMSEEA   92 (99)
T ss_pred             eeCCCChHHCCHHH
Confidence            88888887666543

Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=99.54  E-value=2.5e-14  Score=111.16  Aligned_cols=79  Identities=29%  Similarity=0.403  Sum_probs=70.3

Q ss_pred             CCCCCCC-CCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEcCCCCcCHHH
Q 031455           48 IKDPEHP-YSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAA  126 (159)
Q Consensus        48 V~DPEl~-~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~~~~h~~~~~  126 (159)
                      |.|||++ ++|++||+|++  |.++++  .|.|+|++|+++||+.+.|+.+|+.+| ++. |+.+|+|++...+.|+.+-
T Consensus         1 v~DPEi~~~sIvdLG~Vr~--V~v~gd--~V~VtIt~Ty~gcpa~e~L~~~I~~aL-~~~-Gv~~V~V~i~~~p~Wt~d~   74 (146)
T TIGR02159         1 VPDPEIPVVSVTDLGMVRE--VDVDGG--GVVVKFTPTYSGCPALEVIRQDIRDAV-RAL-GVEVVEVSTSLDPPWTTDW   74 (146)
T ss_pred             CcCCCCCCCCchhcCCeeE--EEEECC--EEEEEEEeCCCCCchHHHHHHHHHHHH-Hhc-CCCeEEEeEeeCCCCChHH
Confidence            7899999 89999999999  999865  899999999999999999999999999 555 8889999999888888776


Q ss_pred             HHHHhc
Q 031455          127 VNKQLN  132 (159)
Q Consensus       127 lnkql~  132 (159)
                      ++..-.
T Consensus        75 it~~gr   80 (146)
T TIGR02159        75 ITEDAR   80 (146)
T ss_pred             CCHHHH
Confidence            655443

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PRK11670 antiporter inner membrane protein; Provisional

Probab=99.22  E-value=7.9e-11  Score=103.01  Aligned_cols=79  Identities=11%  Similarity=0.114  Sum_probs=73.5

Q ss_pred             cCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEE
Q 031455           35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDI  114 (159)
Q Consensus        35 ~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V  114 (159)
                      .+++++|+++|++|.||+++++|+++|+|++  |.+.++  +|.|.+++|.++||....+..+++++| +.++|+.++.|
T Consensus        11 ~~~~~~v~~~l~~v~~p~~~~~~~~~~~v~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   85 (369)
T PRK11670         11 EALRAMVAGTLANFQHPTLKHNLTTLKALHH--VALLDD--TLHIELVMPFVWNSAFEELKEQCSAEL-LRITGAKAIDW   85 (369)
T ss_pred             cchHHHHHHHHhcCCCCCCCCChhhhCCeeE--EEEeCC--EEEEEEEECCCCchHHHHHHHHHHHHH-HhcCCCceEEE
Confidence            3567999999999999999999999999999  999865  899999999999999999999999999 78899999999


Q ss_pred             EEcC
Q 031455          115 MVAP  118 (159)
Q Consensus       115 ~i~~  118 (159)
                      ++..
T Consensus        86 ~~~~   89 (369)
T PRK11670         86 KLSH   89 (369)
T ss_pred             EEee
Confidence            8875

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=89.86  E-value=2.1  Score=28.92  Aligned_cols=49  Identities=20%  Similarity=0.281  Sum_probs=37.7

Q ss_pred             CceeecceEEeCCCceEEEEEEeCCCCCchH-HHHHHHHHHHHHhhCCCceEEE
Q 031455           61 KVITEDAIEVDDERSYVRVTFTPTVEHCSMA-TVIGLCLRVKLMRSLPPRFKVD  113 (159)
Q Consensus        61 GlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~-~~I~~~V~~aL~~~v~~v~~V~  113 (159)
                      |=|.-  +.++++  .|.|.|+=...+||.. .++...|+.+|++.+|++..|.
T Consensus        17 Gdv~l--v~v~~~--~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V~   66 (68)
T PF01106_consen   17 GDVEL--VDVDDG--VVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRVV   66 (68)
T ss_dssp             EEEEE--EEEETT--EEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEEE
T ss_pred             CcEEE--EEecCC--EEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceEE
Confidence            44454  567765  8999999999999988 4567999999988898876653

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=88.57  E-value=2.1  Score=34.57  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=52.2

Q ss_pred             CHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchH-HHHHHHHHHHHHhhCCCceEEEE
Q 031455           37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMA-TVIGLCLRVKLMRSLPPRFKVDI  114 (159)
Q Consensus        37 t~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~-~~I~~~V~~aL~~~v~~v~~V~V  114 (159)
                      ..+.|.++|.+-.-|-+.   -+-|=|.-  +.+++++ .|.|.|+=...|||+. .+++..|+..|++.+|++..|..
T Consensus       106 ~~~~i~~~l~~~irP~l~---~dGGdiel--v~v~~~~-~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~  178 (190)
T TIGR03341       106 LEERINYVLQSEINPQLA---SHGGKVTL--VEITDDG-VAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGVRD  178 (190)
T ss_pred             HHHHHHHHHHhccCHHHH---hcCCceEE--EEEcCCC-EEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceEEE
Confidence            456677777644445553   34555666  6666543 7899999999999987 46778999999888998876654

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=87.57  E-value=3  Score=33.78  Aligned_cols=72  Identities=15%  Similarity=0.200  Sum_probs=53.1

Q ss_pred             CHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchH-HHHHHHHHHHHHhhCC-CceEEEE
Q 031455           37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMA-TVIGLCLRVKLMRSLP-PRFKVDI  114 (159)
Q Consensus        37 t~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~-~~I~~~V~~aL~~~v~-~v~~V~V  114 (159)
                      ..+.|.++|.+-.-|-+-.   +-|=|.-  +.+++++ .|.|.|.=...|||.. .+|+..|+..|+..+| ++..|.-
T Consensus       107 ~~~~i~~~l~~~irP~l~~---dGGdiel--v~v~~~~-~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~~  180 (192)
T PRK11190        107 LMERVEYVLQSQINPQLAG---HGGRVSL--MEITEDG-YAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVRD  180 (192)
T ss_pred             HHHHHHHHHHhccChhHHh---cCCcEEE--EEEcCCC-EEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEEE
Confidence            4667778887555677654   4455565  6666544 7899999999999987 4677799999988888 7766554

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=80.23  E-value=10  Score=27.51  Aligned_cols=78  Identities=13%  Similarity=0.223  Sum_probs=50.2

Q ss_pred             CHHHHHHHhccCCCCCCC-CCccccCceeecceEEeCCCceEEEEEEeCCCCCchH-HHHHHHHHHHHHhhCCCceEEEE
Q 031455           37 DQQEVFDHVRDIKDPEHP-YSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMA-TVIGLCLRVKLMRSLPPRFKVDI  114 (159)
Q Consensus        37 t~e~I~eaL~~V~DPEl~-~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~-~~I~~~V~~aL~~~v~~v~~V~V  114 (159)
                      +..++++++..+.|-++. .=..+=|=|.-  +.|+...+.|.+.+-=...|||.. .+++..|++.|+..+|++..|..
T Consensus         6 ~~~~~~e~v~~~l~~~irP~l~~dGGdve~--~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V~~   83 (93)
T COG0694           6 TDAELLERVEEVLDEKIRPQLAMDGGDVEL--VGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEVEQ   83 (93)
T ss_pred             ccHHHHHHHHHHHHhccCcceeccCCeEEE--EEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceEEE
Confidence            334444444444443332 23345555565  566642237888888899999987 56788899999777888777666


Q ss_pred             EE
Q 031455          115 MV  116 (159)
Q Consensus       115 ~i  116 (159)
                      ..
T Consensus        84 v~   85 (93)
T COG0694          84 VT   85 (93)
T ss_pred             cc
Confidence            43

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
3ux3_A	130	Crystal Structure Of Domain-Swapped Fam96a Minor Di		3e-35
3ux2_A	130	Crystal Structure Of Domain-Swapped Fam96a Major Di		8e-35

>pdb|3UX3|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Minor Dimer Length = 130

Iteration: 1
 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 94/118 (79%), Gaps = 3/118 (2%)
Query: 40  EVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSMATVIGL 96
           EV+D +R I+DPE P +LEEL+V++E  +EV   ++E   V + FTPTV HCS+AT+IGL
Sbjct: 12  EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 71
Query: 97  CLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
           CLRVKL R LP + K++I ++ GTH+TE  +NKQ+NDKERVAAA+ENPNL ++V++C+
Sbjct: 72  CLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 129

>pdb|3UX2|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Major Dimer Length = 130

Iteration: 1
 Score =  142 bits (358), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 93/118 (78%), Gaps = 3/118 (2%)
Query: 40  EVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSMATVIGL 96
           EV+D +R I+DPE P +LEEL+V++E  +EV   ++E   V + FTPTV HCS+AT+IGL
Sbjct: 12  EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 71
Query: 97  CLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
           CLRVKL R LP + K++I ++ GTH+TE  +NKQ+NDKERVAAA ENPNL ++V++C+
Sbjct: 72  CLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAXENPNLREIVEQCV 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	2e-62

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A Length = 130

 Score =  187 bits (476), Expect = 2e-62
 Identities = 67/124 (54%), Positives = 95/124 (76%), Gaps = 3/124 (2%)

Query: 34  EQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSM 90
            +    EV+D +R I+DPE P +LEEL+V++E  +EV   ++E   V + FTPTV HCS+
Sbjct: 6   MEEKALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSL 65

Query: 91  ATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMV 150
           AT+IGLCLRVKL R LP + K++I ++ GTH+TE  +NKQ+NDKERVAAA+ENPNL ++V
Sbjct: 66  ATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIV 125

Query: 151 DECL 154
           ++C+
Sbjct: 126 EQCV 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	100.0
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	99.86
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	99.86
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	99.84
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	93.4
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	91.76
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	87.86
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	87.84
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	87.11

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A

Probab=100.00  E-value=4.4e-38  Score=238.72  Aligned_cols=119  Identities=56%  Similarity=0.968  Sum_probs=104.9

Q ss_pred             CHHHHHHHhccCCCCCCCCCccccCceeecceEE---eCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEE
Q 031455           37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVD  113 (159)
Q Consensus        37 t~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I---~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~  113 (159)
                      ++++||++|++|+|||+|.+|++||+||+++|.+   .++++.|.|+||||+||||++..|+.+|+.+|.+++|+..+|+
T Consensus         9 ~~~eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV~   88 (130)
T 3ux2_A            9 KALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLE   88 (130)
T ss_dssp             HHHHHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred             cHHHHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEEE
Confidence            4789999999999999999999999999966654   2334479999999999999999999999999988899999999


Q ss_pred             EEEcCCCCcCHHHHHHHhcchhhhhcccCCccHHHHHhhhcC
Q 031455          114 IMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLA  155 (159)
Q Consensus       114 V~i~~~~h~~~~~lnkql~dkErv~aa~e~~~l~~~~~~~~~  155 (159)
                      |++++++|.+++++|||+||||||+||+||++|+++|++|+.
T Consensus        89 v~I~pgtH~~e~~vnKQl~DKERvaAAlEn~~l~~~v~~c~~  130 (130)
T 3ux2_A           89 IYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCVL  130 (130)
T ss_dssp             CCCCCC------CHHHHHHCHHHHHHHHHSHHHHHHHHHHHC
T ss_pred             EEECCCCCcCHHHHHHhhhhHHHHHHHhcCHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999974

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=99.86  E-value=4.9e-22  Score=143.57  Aligned_cols=90  Identities=18%  Similarity=0.300  Sum_probs=83.3

Q ss_pred             cCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEE
Q 031455           35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDI  114 (159)
Q Consensus        35 ~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V  114 (159)
                      |+++++|+++|++|+|||+|.+|++||+||+  |.+++++ +|+|+|++|+|+||+.+.|..+|+.+| ++++|+.+|+|
T Consensus         5 m~~~~~V~~aL~~V~DPel~~~iv~lG~V~~--v~v~~~~-~V~v~l~lt~~~cp~~~~l~~~i~~al-~~l~gv~~v~V   80 (103)
T 1uwd_A            5 KVTKEDVLNALKNVIDFELGLDVVSLGLVYD--IQIDDQN-NVKVLMTMTTPMCPLAGMILSDAEEAI-KKIEGVNNVEV   80 (103)
T ss_dssp             CCCHHHHHHHHTTCBCTTTSSBTTTTTCCCC--EEECTTC-EEEEEECCSSSCCSSHHHHHHHHHHHH-HTSSSCCEEEE
T ss_pred             cchHHHHHHHHcCCCCCCCCcChhhcCCeeE--EEEcCCC-EEEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCcceEEE
Confidence            5789999999999999999999999999999  9998643 899999999999999999999999999 78999999999


Q ss_pred             EEcCCCCcCHHHHH
Q 031455          115 MVAPGTHATEAAVN  128 (159)
Q Consensus       115 ~i~~~~h~~~~~ln  128 (159)
                      ++++.++|+.+.+.
T Consensus        81 ~l~~~p~W~~~~~s   94 (103)
T 1uwd_A           81 ELTFDPPWTPERMS   94 (103)
T ss_dssp             EECCSSCCCGGGSC
T ss_pred             EEecCCCCChHHCC
Confidence            99999999875443

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=99.86  E-value=1.9e-22  Score=147.37  Aligned_cols=90  Identities=17%  Similarity=0.266  Sum_probs=82.9

Q ss_pred             cCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEE
Q 031455           35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDI  114 (159)
Q Consensus        35 ~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V  114 (159)
                      +.++++|+++|++|+|||+|++|++||+||+  |.+++++ +|+|+|++|+|+||+...|..+|+.+|+++++|+.+|+|
T Consensus         7 ~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~--I~v~~~~-~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V   83 (108)
T 3lno_A            7 EAFENKLYANLEAVIDPELGVDIVNLGLVYD--VTADENN-NAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEV   83 (108)
T ss_dssp             HHHHHHHHHHGGGCEETTTTEEHHHHTCEEE--EEECTTC-CEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred             hhhHHHHHHHHcCCCCCCCCCCHHHcCCceE--EEECCCC-eEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEE
Confidence            4688999999999999999999999999999  9998643 899999999999999999999999999667999999999


Q ss_pred             EEcCCCCcCHHHH
Q 031455          115 MVAPGTHATEAAV  127 (159)
Q Consensus       115 ~i~~~~h~~~~~l  127 (159)
                      ++++.++|+.+.+
T Consensus        84 ~l~~~p~W~~~~~   96 (108)
T 3lno_A           84 NVVWNPPWSKERM   96 (108)
T ss_dssp             EECCSSCCCGGGS
T ss_pred             EEEecCCCChHHC
Confidence            9999999987544

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=99.84  E-value=3.6e-21  Score=139.15  Aligned_cols=86  Identities=22%  Similarity=0.286  Sum_probs=80.7

Q ss_pred             CHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEE
Q 031455           37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMV  116 (159)
Q Consensus        37 t~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i  116 (159)
                      ++++|+++|++|.|||+|.+|++||+||+  |.++++  +|+|+|++|+|+||+...|..+|+.+| ++++|+.+|+|++
T Consensus         7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~--v~v~~~--~V~v~l~lt~~~cp~~~~l~~~i~~al-~~l~gv~~V~V~l   81 (103)
T 3cq1_A            7 LEAQAWALLEAVYDPELGLDVVNLGLIYD--LVVEPP--RAYVRMTLTTPGCPLHDSLGEAVRQAL-SRLPGVEEVEVEV   81 (103)
T ss_dssp             HHHHHHHHHTTCBCTTTCSBTTTTTCEEE--EEEETT--EEEEEECCSSSSCCSSCHHHHHHHHHH-HTSTTCCEEEEEE
T ss_pred             HHHHHHHHHhCCCCCCCCcCchhcCceEE--EEEECC--EEEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCceeEEEEE
Confidence            57899999999999999999999999999  999865  899999999999999999999999999 7899999999999


Q ss_pred             cCCCCcCHHHH
Q 031455          117 APGTHATEAAV  127 (159)
Q Consensus       117 ~~~~h~~~~~l  127 (159)
                      ++.++|+.+.+
T Consensus        82 ~~~p~W~~~~~   92 (103)
T 3cq1_A           82 TFEPPWTLARL   92 (103)
T ss_dssp             CCSSCCCGGGC
T ss_pred             ecCCCCChHHC
Confidence            99999987543

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=93.40  E-value=0.53  Score=32.74  Aligned_cols=72  Identities=15%  Similarity=0.227  Sum_probs=50.3

Q ss_pred             HHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHH-HHHHHHHHHHHhhCCCceEEEEEE
Q 031455           38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMAT-VIGLCLRVKLMRSLPPRFKVDIMV  116 (159)
Q Consensus        38 ~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~-~I~~~V~~aL~~~v~~v~~V~V~i  116 (159)
                      .+.|.++|.+ .=|-+.   -+=|=|.-  +.+++  +.|.|.|.=...|||... +++..|+++|+..+|++..|...-
T Consensus         9 ~~~I~~~L~~-IRP~L~---~dGGdvel--v~v~~--g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~   80 (88)
T 1xhj_A            9 FDQVAEVIER-LRPFLL---RDGGDCTL--VDVED--GIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVF   80 (88)
T ss_dssp             HHHHHHHHHH-HHHHHH---HHSCEEEE--EECCS--SEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred             HHHHHHHHHH-hcHHHH---hcCCeEEE--EEEEC--CEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEecc
Confidence            4556666655 334332   23444555  55543  389999999999999986 488899999988899988877643


Q ss_pred             c
Q 031455          117 A  117 (159)
Q Consensus       117 ~  117 (159)
                      .
T Consensus        81 ~   81 (88)
T 1xhj_A           81 L   81 (88)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=91.76  E-value=0.55  Score=35.76  Aligned_cols=71  Identities=14%  Similarity=0.265  Sum_probs=51.1

Q ss_pred             CcCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEE
Q 031455           34 EQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVD  113 (159)
Q Consensus        34 ~~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~  113 (159)
                      .+++++.|-++|.+|+ |-+..  .+=|=|.-  +.|+++  .|+|.++=...+|   .+++..|+++|++.+|++..|.
T Consensus        83 l~L~~~~v~~~L~~iR-P~L~~--~dGGdvel--v~v~~~--~v~v~l~Gac~~~---~Tlk~~Ie~~l~e~vP~i~~V~  152 (154)
T 2z51_A           83 LELNEENIEKVLEEIR-PYLIG--TADGSLDL--VEIEDP--IVKIRITGPAAGV---MTVRVAVTQKLREKIPSIAAVQ  152 (154)
T ss_dssp             CCSSHHHHHHHHHHHG-GGCCG--GGCCEEEE--EEEETT--EEEEEEESGGGGC---HHHHHHHHHHHHHHCTTCCEEE
T ss_pred             hHHHHHHHHHHHHHHH-HHhhh--cCCCCeEE--EEEECC--EEEEEEecCCccc---HhHHHHHHHHHHHHCCCccEEE
Confidence            4688999999988753 55532  13455666  667643  7888887655554   6889999999999999998875


Q ss_pred             E
Q 031455          114 I  114 (159)
Q Consensus       114 V  114 (159)
                      .
T Consensus       153 ~  153 (154)
T 2z51_A          153 L  153 (154)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=87.86  E-value=0.62  Score=35.45  Aligned_cols=75  Identities=19%  Similarity=0.312  Sum_probs=54.2

Q ss_pred             cCcCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHH-HHHHHHHHHHHhhCCCceE
Q 031455           33 AEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMAT-VIGLCLRVKLMRSLPPRFK  111 (159)
Q Consensus        33 ~~~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~-~I~~~V~~aL~~~v~~v~~  111 (159)
                      |.+++.+.|.++|.+| =|-+..   +=|=|.-  +.++++  .|.|.+.=...|||... +++..|+++|+..+|++..
T Consensus         1 ~~~~~~e~v~~~L~~i-RP~l~~---dGGdvel--v~v~~~--~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~   72 (154)
T 2z51_A            1 MVPLTEENVESVLDEI-RPYLMS---DGGNVAL--HEIDGN--VVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVA   72 (154)
T ss_dssp             CCCSCHHHHHHHHHHH-HHHHHH---TTEEEEE--EEEETT--EEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred             CCcchHHHHHHHHHHh-ChHHHh---cCCeEEE--EEEECC--EEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceE
Confidence            3467888888888763 454432   2344554  556543  89999998899999964 5888999999888998877


Q ss_pred             EEEE
Q 031455          112 VDIM  115 (159)
Q Consensus       112 V~V~  115 (159)
                      |...
T Consensus        73 V~~v   76 (154)
T 2z51_A           73 VEAL   76 (154)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6553

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=87.84  E-value=0.74  Score=32.19  Aligned_cols=70  Identities=13%  Similarity=0.137  Sum_probs=47.6

Q ss_pred             HHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHH-HHHHHHHHHHhhCCCceEEEE
Q 031455           38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATV-IGLCLRVKLMRSLPPRFKVDI  114 (159)
Q Consensus        38 ~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~-I~~~V~~aL~~~v~~v~~V~V  114 (159)
                      .+.|.+.|.+-.=|-+.   -+=|=|.-  +.++++  .|.|.|.=...|||.... ++..|+++|+..+|++..|..
T Consensus        15 ~~~I~~~L~~~IRP~L~---~dGGdvel--v~v~~g--~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~   85 (92)
T 1veh_A           15 VAMIKELLDTRIRPTVQ---EDGGDVIY--RGFEDG--IVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQ   85 (92)
T ss_dssp             HHHHHHHHHHTTHHHHH---HHSCCCCE--EEEETT--EEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEE
T ss_pred             HHHHHHHHHHHhhHHHH---hcCCeEEE--EEEeCC--EEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEE
Confidence            34466666543334332   22344444  556543  888888888999999864 788999999888999877765

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1

Probab=87.11  E-value=0.83  Score=30.70  Aligned_cols=70  Identities=13%  Similarity=0.162  Sum_probs=49.1

Q ss_pred             cCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEE
Q 031455           35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDI  114 (159)
Q Consensus        35 ~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V  114 (159)
                      .++.+.|.++|.+ .-|-+..+=  =|=|.-  +.++++  .|.|.|+=...+|   .+++..|+++|++.+|++..|..
T Consensus         3 ~~~~~~V~~~L~~-iRP~L~~dG--GGdvel--v~v~~g--~V~v~l~GaC~gc---~Tlk~gIe~~L~~~vpei~~V~~   72 (74)
T 1th5_A            3 ELNEENVEKVLNE-IRPYLAGTG--GGGLQF--LMIKGP--IVKVRLTGPAAVV---RTVRIAVSKKLREKIPSIQIVQL   72 (74)
T ss_dssp             CCSHHHHHHHHTT-THHHHTTTT--CCCCCC--CEEETT--EEEECCCSSSSSS---SSHHHHHHHHHHHHCTTCSEEEE
T ss_pred             hHHHHHHHHHHHH-HhHHHHhcC--CCcEEE--EEEeCC--EEEEEEecCCcch---HHHHHHHHHHHHHHCCCCcEEEe
Confidence            4678899999987 556554332  023444  445543  7888777777777   68999999999888999877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1uwda_	102	d.52.8.2 (A:) Hypothetical protein TM0487 {Thermot	4e-04

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 12/62 (19%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 33 AEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMAT 92
          ++++ +++V + ++++ D E    +  L ++ +      D+++ V+V  T T   C +A 
Sbjct: 2  SKKVTKEDVLNALKNVIDFELGLDVVSLGLVYD---IQIDDQNNVKVLMTMTTPMCPLAG 58

Query: 93 VI 94
          +I
Sbjct: 59 MI 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	99.91
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	99.88
d1th5a1	73	NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [	94.31
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	93.71
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	93.59

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=5.9e-25  Score=158.50  Aligned_cols=91  Identities=18%  Similarity=0.301  Sum_probs=84.7

Q ss_pred             CcCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEE
Q 031455           34 EQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVD  113 (159)
Q Consensus        34 ~~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~  113 (159)
                      .++|+++|+++|++|.|||+|+|||+|||||+  |.|+++| .|.|.|++|+|+||+...|..++++++ ++++|+.+|+
T Consensus         3 ~~vt~~~V~~aL~~V~DPe~~~dIV~LGlV~~--i~I~~~g-~V~v~~~lt~~~Cp~~~~i~~~i~~al-~~~~gV~~v~   78 (102)
T d1uwda_           3 KKVTKEDVLNALKNVIDFELGLDVVSLGLVYD--IQIDDQN-NVKVLMTMTTPMCPLAGMILSDAEEAI-KKIEGVNNVE   78 (102)
T ss_dssp             SCCCHHHHHHHHTTCBCTTTSSBTTTTTCCCC--EEECTTC-EEEEEECCSSSCCSSHHHHHHHHHHHH-HTSSSCCEEE
T ss_pred             cccCHHHHHHHHhCCCCCCCCcceeeccceee--EEecccc-ceEEEEecCCCCCchHHHHHHHHHHHH-HcCCCCceEE
Confidence            46899999999999999999999999999999  9998754 899999999999999999999999999 7899999999


Q ss_pred             EEEcCCCCcCHHHHH
Q 031455          114 IMVAPGTHATEAAVN  128 (159)
Q Consensus       114 V~i~~~~h~~~~~ln  128 (159)
                      |++++.++|+++.+.
T Consensus        79 V~i~~~p~W~~~~~s   93 (102)
T d1uwda_          79 VELTFDPPWTPERMS   93 (102)
T ss_dssp             EEECCSSCCCGGGSC
T ss_pred             EEEEecCCCChHHCC
Confidence            999999999886443

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=2.2e-23  Score=147.03  Aligned_cols=84  Identities=23%  Similarity=0.302  Sum_probs=79.6

Q ss_pred             HHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455           38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA  117 (159)
Q Consensus        38 ~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~  117 (159)
                      +++|+++|++|.|||+|+|||+|||||+  |.|+++  +|.|+|++|+++||+...|..+++.+| ++++|+.+|+|+++
T Consensus         3 e~~v~eaL~~V~DPe~~~dIv~LGlV~~--i~i~~~--~v~v~l~lt~~~cp~~~~i~~~i~~al-~~l~gv~~V~V~~~   77 (91)
T d2cu6a1           3 EAQAWALLEAVYDPELGLDVVNLGLIYD--LVVEPP--RAYVRMTLTTPGCPLHDSLGEAVRQAL-SRLPGVEEVEVEVT   77 (91)
T ss_dssp             HHHHHHHHTTCEETTTTEETTTTTCEEE--EEEETT--EEEEEECCSSSSCCSSCHHHHHHHHHH-HTSTTCCEEEEEEC
T ss_pred             HHHHHHHHhcCCCCCCCcChhhccceeE--EEEecc--ccEEEEEcCCCCCcHHHHHHHHHHHHH-HcCCCCceEEEEEE
Confidence            7899999999999999999999999999  999865  899999999999999999999999999 78999999999999


Q ss_pred             CCCCcCHHH
Q 031455          118 PGTHATEAA  126 (159)
Q Consensus       118 ~~~h~~~~~  126 (159)
                      +.+.|+.+.
T Consensus        78 ~~p~W~~~~   86 (91)
T d2cu6a1          78 FEPPWTLAR   86 (91)
T ss_dssp             CSSCCCGGG
T ss_pred             ecCCCChhh
Confidence            999887643

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.31  E-value=0.039  Score=35.62  Aligned_cols=68  Identities=16%  Similarity=0.268  Sum_probs=51.8

Q ss_pred             cCCHHHHHHHhccCCCCCCCCCcc--ccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEE
Q 031455           35 QIDQQEVFDHVRDIKDPEHPYSLE--ELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV  112 (159)
Q Consensus        35 ~lt~e~I~eaL~~V~DPEl~~~IV--dLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V  112 (159)
                      .++++.|..+|..|+ |-    +.  +=|-|.-  +.++++  .|.|.|.=...||+   +++..|++.|++.+|++..|
T Consensus         2 el~ee~V~~vL~eir-P~----l~a~dGGdvel--v~i~~~--~v~v~l~GaC~gC~---Tl~~gIe~~L~~~iPei~~V   69 (73)
T d1th5a1           2 ELNEENVEKVLNEIR-PY----LAGTGGGGLQF--LMIKGP--IVKVRLTGPAAVVR---TVRIAVSKKLREKIPSIQIV   69 (73)
T ss_dssp             CCSHHHHHHHHTTTH-HH----HTTTTCCCCCC--CEEETT--EEEECCCSSSSSSS---SHHHHHHHHHHHHCTTCSEE
T ss_pred             CCCHHHHHHHHHHhc-cc----ccccCCceEEE--EEecCC--EEEEEecCCCcccc---hHHHHHHHHHHHHCCCccEE
Confidence            468899999996642 22    22  3466776  677654  89999998899994   78889999999999999877


Q ss_pred             EE
Q 031455          113 DI  114 (159)
Q Consensus       113 ~V  114 (159)
                      ++
T Consensus        70 ~~   71 (73)
T d1th5a1          70 QL   71 (73)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=93.71  E-value=0.21  Score=33.03  Aligned_cols=55  Identities=15%  Similarity=0.262  Sum_probs=42.6

Q ss_pred             ccCceeecceEEeCCCceEEEEEEeCCCCCchH-HHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455           59 ELKVITEDAIEVDDERSYVRVTFTPTVEHCSMA-TVIGLCLRVKLMRSLPPRFKVDIMVA  117 (159)
Q Consensus        59 dLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~-~~I~~~V~~aL~~~v~~v~~V~V~i~  117 (159)
                      +=|-|.-  +.+++  +.|.|.|.=...|||+. ..+...|++.|+..+|++..|.--+.
T Consensus        26 dGGdvel--v~v~~--g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~V~~   81 (88)
T d1xhja_          26 DGGDCTL--VDVED--GIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVFL   81 (88)
T ss_dssp             HSCEEEE--EECCS--SEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred             CCCcEEE--EeccC--CEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceEEEecC
Confidence            4565666  56654  38999999999999997 45779999999889999887765443

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.59  E-value=0.019  Score=38.75  Aligned_cols=69  Identities=13%  Similarity=0.133  Sum_probs=51.9

Q ss_pred             HHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchH-HHHHHHHHHHHHhhCCCceEEE
Q 031455           38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMA-TVIGLCLRVKLMRSLPPRFKVD  113 (159)
Q Consensus        38 ~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~-~~I~~~V~~aL~~~v~~v~~V~  113 (159)
                      .+.|.+.|..-.-|-+.   .+-|-|.-  +.++++  .|.|.|.=...|||+. .++...|++.|+..+|++..|.
T Consensus        15 ~~~I~~vL~~~IrP~l~---~dGGdv~l--v~v~~g--~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V~   84 (92)
T d1veha_          15 VAMIKELLDTRIRPTVQ---EDGGDVIY--RGFEDG--IVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVE   84 (92)
T ss_dssp             HHHHHHHHHHTTHHHHH---HHSCCCCE--EEEETT--EEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEE
T ss_pred             HHHHHHHHHHhcChHHH---HcCCceEE--EEeeCC--eEEEEEccCCCCChhHHHHHHHHHHHHHHHHCCCcceEE
Confidence            34555566554456554   45666776  677753  8999999999999998 6788999999988899887664