Citrus Sinensis ID: 031458

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEEDV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccccccccEEccccEEEEEEEcccccEEEEEEEEEEccccEEEEEEccccccccEEEEEccccccccccccccccccEEEEEEcccccccEEEEcccccccccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEcccccccccccccEccccEEEEEEEcccccEEEEEEEEEEccccEEEEEEcccccccEEEEEEEEccccccccccccccccEEEEEccccccccEEEccccccccccccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MARTLLLIALCVLPalvsavrpnpkpfsvegrvycdtcqagfetpattyiAGAKVKVECKDRKSMQVVysregktdstgtyKILVSEDHQDQLCDAVlvsspqndcktvapgreRSRVILTSYNGISSETRYAnsmgfmkaepmsGCAEVLRLYQEEDV
Flexible Loop (DISEMBL)
MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETpattyiagakvkveckdrksmqvvysregktdstGTYKILVSEDHQDQLCDAVLvsspqndcktvapgrersrviltsyngissetRYANSMGFMKAEPMSGCAEVLRLYQEEDV
Low Complexity Region (SEG)
MARTlllialcvlpalvSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEEDV
Disordered region (IsUnstruct)
***TLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSR******TGTYKILVSEDHQDQLCDAVLVS****************RVILTSYNGIS****Y**************CAEVLR*******
Disordered Region (DISOPRED)
MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSS**********************NGISSETRYANSMGFMKAEPMSGCAEVLRLYQE***
Disordered Region (DISEMBL)
MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRK*************STGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEEDV
Disordered Region (DISPRO)
MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEE**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEEDV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
P33050	170	Pollen-specific protein C	N/A	no	0.924	0.864	0.435	1e-30
P13447	161	Anther-specific protein L	N/A	no	0.943	0.931	0.414	4e-30
O49813	166	Olee1-like protein OS=Bet	N/A	no	0.943	0.903	0.407	3e-28
Q8H6L7	143	Pollen allergen Phl p 11	N/A	no	0.830	0.923	0.421	7e-26
Q8LGR0	168	Pollen allergen Che a 1 O	N/A	no	0.968	0.916	0.398	1e-25
Q7M1X5	134	Major pollen allergen Lol	N/A	no	0.805	0.955	0.418	8e-25
P19963	145	Major pollen allergen Ole	N/A	no	0.798	0.875	0.351	1e-21
O82015	145	Major pollen allergen Lig	N/A	no	0.792	0.868	0.333	1e-19
P82242	131	Major pollen allergen Pla	N/A	no	0.767	0.931	0.346	6e-12

>sp|P33050|PSC13_MAIZE Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 97/147 (65%)

Query: 6   LLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSM 65
           +++ LCV+ +  +A  PN   + ++GRVYCDTC+AGF T  T YIAGAKV++ECK   + 
Sbjct: 14  VILCLCVVLSCAAADDPNLPDYVIQGRVYCDTCRAGFVTNVTEYIAGAKVRLECKHFGTG 73

Query: 66  QVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNG 125
           ++  + +G TD+TGTY I + + H++ +C  VLV+SP+ DC  V   R+R+ V+LT   G
Sbjct: 74  KLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVG 133

Query: 126 ISSETRYANSMGFMKAEPMSGCAEVLR 152
           IS   R AN +G+ K  P+  CA +L+
Sbjct: 134 ISDSLRPANPLGYFKDVPLPVCAALLK 160

Zea mays (taxid: 4577)

>sp|P13447|LAT52_SOLLC Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1

 Score =  130 bits (327), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 96/152 (63%), Gaps = 2/152 (1%)

Query: 1   MARTLLLI-ALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVEC 59
           MA+ ++L+ ALC+L AL +     P+ F VEG+VYCDTC+  FET  +  + GA VK++C
Sbjct: 1   MAKAIVLLSALCIL-ALANFAHCRPEVFDVEGKVYCDTCRVQFETKLSENLEGATVKLQC 59

Query: 60  KDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVI 119
           ++  +    +S EG TD  G YK+ V+ DH++ +C+  +V SP+ DCK    G E++R+ 
Sbjct: 60  RNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIE 119

Query: 120 LTSYNGISSETRYANSMGFMKAEPMSGCAEVL 151
            +   GI +  R+AN + FMKAE + GC E L
Sbjct: 120 CSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151

May play a role during germination or early tube growth.

Solanum lycopersicum (taxid: 4081)

>sp|O49813|OLEE1_BETPN Olee1-like protein OS=Betula pendula PE=2 SV=1

 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 7/157 (4%)

Query: 1   MARTLLLIA--LCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVE 58
           MA+++++ A  LC L  L  A   +   F VEG+VYCD C+  F T  +TY+ GAKV +E
Sbjct: 1   MAKSIIIQAPALCFLSLLGFAY--SESRFFVEGKVYCDNCRTQFVTKLSTYMKGAKVSLE 58

Query: 59  CKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPG---RER 115
           C++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ 
Sbjct: 59  CRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKS 118

Query: 116 SRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLR 152
           +R+ LT  NGIS+  R AN +GFMK +P+  CA+ LR
Sbjct: 119 ARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155

Betula pendula (taxid: 3505)

>sp|Q8H6L7|PHLB_PHLPR Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1

 Score =  116 bits (290), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 1/133 (0%)

Query: 27  FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86
           F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + 
Sbjct: 6   FVVTGRVYCDPCRAGFETNVSHNVQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEID 65

Query: 87  EDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMS 145
           +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+ 
Sbjct: 66  QDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLK 125

Query: 146 GCAEVLRLYQEED 158
            C  +L+ Y   D
Sbjct: 126 ECGGILQAYDLRD 138

Phleum pratense (taxid: 15957)

>sp|Q8LGR0|CHE1_CHEAL Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 4/158 (2%)

Query: 5   LLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKS 64
           LL+ ALCVL +L          F V+G VYCDTC+  F T  +T + GA VK+EC++  +
Sbjct: 9   LLVGALCVL-SLAGVANAAENHFKVQGMVYCDTCRIQFMTRISTIMEGATVKLECRNITA 67

Query: 65  MQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAP---GRERSRVILT 121
               +  E  TD  G Y I V+ D +D +C+  LV SP ++C  V+     ++ ++V LT
Sbjct: 68  GTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLT 127

Query: 122 SYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEEDV 159
           S NG +S+ R AN++GFM+ EP+  C EVL+     DV
Sbjct: 128 SNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165

Chenopodium album (taxid: 3559)

>sp|Q7M1X5|LOLB_LOLPR Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1

 Score =  112 bits (281), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 1/129 (0%)

Query: 27  FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86
           F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + 
Sbjct: 6   FVVTGRVYCDPCRAGFETNVSHNVEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEID 65

Query: 87  EDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMS 145
           +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+ 
Sbjct: 66  QDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLK 125

Query: 146 GCAEVLRLY 154
            C  +L+ Y
Sbjct: 126 ECGGILQAY 134

Lolium perenne (taxid: 4522)

>sp|P19963|ALL1_OLEEU Major pollen allergen Ole e 1 OS=Olea europaea PE=1 SV=2

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 77/131 (58%), Gaps = 4/131 (3%)

Query: 24  PKP----FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTG 79
           P+P    F ++G+VYCDTC+AGF T  + +I GA ++++CKD+++  V ++  G T + G
Sbjct: 4   PQPPVSQFHIQGQVYCDTCRAGFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEG 63

Query: 80  TYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFM 139
            Y +LV  DH+++ C+  L+SS + DC  +         +    N ++  TR  N +GF 
Sbjct: 64  LYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFF 123

Query: 140 KAEPMSGCAEV 150
           K E +  CA+V
Sbjct: 124 KKEALPKCAQV 134

Olea europaea (taxid: 4146)

>sp|O82015|LIGV1_LIGVU Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 73/126 (57%)

Query: 27  FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86
           F ++G+VYCDTC+A F T  + +I GA V+++CKD ++ +V ++  G T + G Y +L+ 
Sbjct: 11  FYIQGQVYCDTCRARFITELSEFIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIE 70

Query: 87  EDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSG 146
            DH+++ C+  L+SS + DC  +         +    N ++  TR  N +GF+K E +  
Sbjct: 71  RDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNGTTRTINPLGFLKKEVLPK 130

Query: 147 CAEVLR 152
           C +V  
Sbjct: 131 CPQVFN 136

Ligustrum vulgare (taxid: 13597)

>sp|P82242|PLAL1_PLALA Major pollen allergen Pla l 1 OS=Plantago lanceolata PE=1 SV=2

 Score = 70.1 bits (170), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 8/130 (6%)

Query: 23  NPKPFSVEGRVYCDTCQA-GFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTY 81
           +P  F VEG VYC+ C +       +  +AGA+V+++CKD  S +V+YS  G+TD  G Y
Sbjct: 5   HPAKFHVEGEVYCNVCHSRNLINELSERMAGAQVQLDCKD-DSKKVIYSIGGETDQDGVY 63

Query: 82  KILVSEDHQDQLCDAVLVSSPQNDCKTV---APGR-ERSRVILTSYNGISSETRYANSMG 137
           ++ V   H+D  C+  LV S + DC  +   A G  + S+V L+    I+ +TR+   + 
Sbjct: 64  RLPVVGYHED--CEIKLVKSSRPDCSEIPKLAKGTIQTSKVDLSKNTTITEKTRHVKPLS 121

Query: 138 FMKAEPMSGC 147
           F       GC
Sbjct: 122 FRAKTDAPGC 131

Plantago lanceolata (taxid: 39414)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
86156028	159	pollen-specific protein [Vitis pseudoret	0.981	0.981	0.730	3e-63
224063201	159	predicted protein [Populus trichocarpa]	0.993	0.993	0.715	1e-62
255545650	159	Pollen-specific protein C13 precursor, p	0.981	0.981	0.724	1e-62
118484689	159	unknown [Populus trichocarpa]	0.993	0.993	0.715	1e-62
359492834	159	PREDICTED: pollen-specific protein C13-l	0.981	0.981	0.724	4e-62
118482125	159	unknown [Populus trichocarpa]	0.993	0.993	0.708	8e-62
225469438	159	PREDICTED: pollen-specific protein C13 i	0.993	0.993	0.645	1e-55
18413144	159	protein SAH7 [Arabidopsis thaliana] gi|4	0.981	0.981	0.608	1e-55
238590915	160	hypothetical protein MPER_07958 [Monilio	0.918	0.912	0.671	4e-54
297809053	162	hypothetical protein ARALYDRAFT_489767 [	0.981	0.962	0.591	2e-53

>gi|86156028|gb|ABC86745.1| pollen-specific protein [Vitis pseudoreticulata]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 135/156 (86%)

Query: 1   MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECK 60
           M R +LL+ALCVLPALVSA RP  +PF ++GRVYCDTC+AGFET ATTYIAGAKV+VECK
Sbjct: 1   MGRLMLLVALCVLPALVSAGRPVSQPFVLQGRVYCDTCRAGFETSATTYIAGAKVRVECK 60

Query: 61  DRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVIL 120
           DR SMQ++YS EG TDSTGTYKI+V+EDH+DQLCDAVLVSSPQ+DC +V PGR+R+ VIL
Sbjct: 61  DRNSMQLLYSIEGITDSTGTYKIMVTEDHEDQLCDAVLVSSPQSDCASVDPGRDRAAVIL 120

Query: 121 TSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQE 156
           T YNGI S+ RYANSMGF+K  PMS C ++L+ YQE
Sbjct: 121 TRYNGIVSDNRYANSMGFLKDHPMSECTQLLQQYQE 156

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063201|ref|XP_002301038.1| predicted protein [Populus trichocarpa] gi|118482413|gb|ABK93129.1| unknown [Populus trichocarpa] gi|118485251|gb|ABK94485.1| unknown [Populus trichocarpa] gi|118487858|gb|ABK95752.1| unknown [Populus trichocarpa] gi|222842764|gb|EEE80311.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/158 (71%), Positives = 132/158 (83%)

Query: 1   MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECK 60
           MAR  +L+ALCVLPALVSA RP   PFSV+G VYCDTC AGFETP TTYIAG+KVKVEC+
Sbjct: 1   MARVFMLLALCVLPALVSAARPGRNPFSVQGLVYCDTCLAGFETPKTTYIAGSKVKVECR 60

Query: 61  DRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVIL 120
           DRK+  +VYS+EG TDSTG Y I V EDH+DQ+CDA+LVSSP+ DC + + GR+R+RVIL
Sbjct: 61  DRKTQDLVYSKEGTTDSTGKYIITVDEDHKDQICDAMLVSSPRKDCSSPSAGRDRARVIL 120

Query: 121 TSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEED 158
           TSYNG+ S TRYANSMGFM A+PMSGC E+LR YQE D
Sbjct: 121 TSYNGLVSTTRYANSMGFMAAQPMSGCTELLRSYQEFD 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545650|ref|XP_002513885.1| Pollen-specific protein C13 precursor, putative [Ricinus communis] gi|223546971|gb|EEF48468.1| Pollen-specific protein C13 precursor, putative [Ricinus communis]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 133/156 (85%)

Query: 1   MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECK 60
           MAR +LL+ALCVLPALV+A RP   PF VEGRVYCDTC+AGFET  TTY+AGAKV+VECK
Sbjct: 1   MARAILLLALCVLPALVAAARPARNPFEVEGRVYCDTCRAGFETSKTTYVAGAKVRVECK 60

Query: 61  DRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVIL 120
           DRK+M++VYS+EG TDSTGTY+I V EDHQDQLCDA+LVSSPQ+DC   + GR+R+RVIL
Sbjct: 61  DRKTMELVYSKEGTTDSTGTYRIHVDEDHQDQLCDAMLVSSPQHDCMKPSSGRDRARVIL 120

Query: 121 TSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQE 156
           T+ NGI S  RYANS+GFMK + MSGC E+LR YQE
Sbjct: 121 TNNNGIVSNKRYANSIGFMKEDAMSGCFELLRQYQE 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484689|gb|ABK94215.1| unknown [Populus trichocarpa]

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/158 (71%), Positives = 132/158 (83%)

Query: 1   MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECK 60
           MAR  +L+ALCVLPALVSA RP   PFSV+G VYCDTC AGFETP TTYIAG+KVKVEC+
Sbjct: 1   MARVFMLLALCVLPALVSAARPGRNPFSVQGIVYCDTCLAGFETPKTTYIAGSKVKVECR 60

Query: 61  DRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVIL 120
           DRK+  +VYS+EG TDSTG Y I V EDH+DQ+CDA+LVSSP+ DC + + GR+R+RVIL
Sbjct: 61  DRKTQDLVYSKEGTTDSTGKYIITVDEDHKDQICDAMLVSSPRKDCSSPSAGRDRARVIL 120

Query: 121 TSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEED 158
           TSYNG+ S TRYANSMGFM A+PMSGC E+LR YQE D
Sbjct: 121 TSYNGLVSTTRYANSMGFMAAQPMSGCTELLRSYQEFD 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492834|ref|XP_003634471.1| PREDICTED: pollen-specific protein C13-like [Vitis vinifera] gi|147801295|emb|CAN61642.1| hypothetical protein VITISV_029644 [Vitis vinifera] gi|302141929|emb|CBI19132.3| unnamed protein product [Vitis vinifera]

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 134/156 (85%)

Query: 1   MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECK 60
           M R +LL+ALCVLPALVSA RP  +PF ++GRVYCDTC+AGFET ATTYIAGAKV+VECK
Sbjct: 1   MGRLMLLVALCVLPALVSAGRPVSQPFVLQGRVYCDTCRAGFETSATTYIAGAKVRVECK 60

Query: 61  DRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVIL 120
           DR SMQ++YS EG TDSTGTYKI+V+ED +DQLCDAVLVSSPQ+DC +V PGR+R+ VIL
Sbjct: 61  DRNSMQLLYSIEGITDSTGTYKIMVTEDREDQLCDAVLVSSPQSDCASVDPGRDRAAVIL 120

Query: 121 TSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQE 156
           T YNGI S+ RYANSMGF+K  PMS C ++L+ YQE
Sbjct: 121 TRYNGIVSDNRYANSMGFLKDHPMSECTQLLQQYQE 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482125|gb|ABK92993.1| unknown [Populus trichocarpa]

 Score =  241 bits (615), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 131/158 (82%)

Query: 1   MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECK 60
           MAR  +L+ALCVLPALVSA RP    FSV+G VYCDTC AGFETP TTYIAG+KVKVEC+
Sbjct: 1   MARVFMLLALCVLPALVSAARPGRNTFSVQGLVYCDTCLAGFETPKTTYIAGSKVKVECR 60

Query: 61  DRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVIL 120
           DRK+  +VYS+EG TDSTG Y I V EDH+DQ+CDA+LVSSP+ DC + + GR+R+RVIL
Sbjct: 61  DRKTQDLVYSKEGTTDSTGKYIITVDEDHKDQICDAMLVSSPRKDCSSPSAGRDRARVIL 120

Query: 121 TSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEED 158
           TSYNG+ S TRYANSMGFM A+PMSGC E+LR YQE D
Sbjct: 121 TSYNGLVSTTRYANSMGFMAAQPMSGCTELLRSYQEFD 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469438|ref|XP_002268073.1| PREDICTED: pollen-specific protein C13 isoform 1 [Vitis vinifera] gi|359496552|ref|XP_003635264.1| PREDICTED: pollen-specific protein C13 isoform 2 [Vitis vinifera] gi|296086870|emb|CBI33037.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/158 (64%), Positives = 125/158 (79%)

Query: 1   MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECK 60
           MA+ L+ IALC+L   VS  RP  KPF + GRVYCDTC+AGFET ATTYIAGA+V++ECK
Sbjct: 1   MAKLLMSIALCLLLVYVSEARPMRKPFVLHGRVYCDTCRAGFETSATTYIAGARVRIECK 60

Query: 61  DRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVIL 120
           DR S+Q+VYS EG TDSTGTYK  +++DH DQ+CDAVLV SPQ DC  V  GR+RSR+ L
Sbjct: 61  DRNSLQLVYSVEGVTDSTGTYKFSIADDHGDQMCDAVLVKSPQPDCAKVDAGRDRSRLSL 120

Query: 121 TSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEED 158
           T  NG+ S+TR+AN+MGFMK EP SGC ++L+ YQE D
Sbjct: 121 TRSNGLVSDTRFANAMGFMKDEPASGCTQLLKQYQESD 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18413144|ref|NP_567338.1| protein SAH7 [Arabidopsis thaliana] gi|4584110|emb|CAB40579.1| SAH7 protein [Arabidopsis thaliana] gi|18491199|gb|AAL69502.1| unknown protein [Arabidopsis thaliana] gi|21280951|gb|AAM45117.1| unknown protein [Arabidopsis thaliana] gi|21553842|gb|AAM62935.1| allergen-like protein BRSn20 [Arabidopsis thaliana] gi|110737041|dbj|BAF00475.1| hypothetical protein [Arabidopsis thaliana] gi|332657268|gb|AEE82668.1| protein SAH7 [Arabidopsis thaliana]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 95/156 (60%), Positives = 126/156 (80%)

Query: 1   MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECK 60
           M++ +LL+ALC LPAL  A RPN  PF V GRVYCDTC AGFETPA+TYI+GA V++ECK
Sbjct: 1   MSKAVLLVALCFLPALAIAARPNKNPFVVRGRVYCDTCLAGFETPASTYISGAVVRLECK 60

Query: 61  DRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVIL 120
           DR++M++ YS E +TDSTG+YKILV+EDH +Q CDA+LV S Q  C  V+PG +R+RV L
Sbjct: 61  DRRTMELTYSHEARTDSTGSYKILVNEDHDEQFCDAMLVRSSQLRCSNVSPGHDRARVTL 120

Query: 121 TSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQE 156
           T +NGI+S+ R+AN+MGF++   M GCA++++LYQE
Sbjct: 121 TRFNGIASDDRFANNMGFLRDAAMPGCADIMKLYQE 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238590915|ref|XP_002392460.1| hypothetical protein MPER_07958 [Moniliophthora perniciosa FA553] gi|215458527|gb|EEB93390.1| hypothetical protein MPER_07958 [Moniliophthora perniciosa FA553]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 98/146 (67%), Positives = 122/146 (83%)

Query: 14  PALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREG 73
           PA+  A RP   P +V G+VYCDTC+AGFETPA+TYIAGAKVKVECKDR SM+++YS+E 
Sbjct: 15  PAIAFAARPARNPLTVTGKVYCDTCRAGFETPASTYIAGAKVKVECKDRTSMKLLYSQEA 74

Query: 74  KTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYA 133
            TDSTGTYK+ VSEDHQDQLCDA+L+SSPQ +C+  A GR+R+RVILT YNGI S+TRYA
Sbjct: 75  TTDSTGTYKLFVSEDHQDQLCDAMLLSSPQPNCQKPAAGRDRARVILTRYNGIVSDTRYA 134

Query: 134 NSMGFMKAEPMSGCAEVLRLYQEEDV 159
           N+MGF   +P++GC +VL+ YQ+ DV
Sbjct: 135 NNMGFEMDQPLAGCTQVLQQYQDFDV 160

Source: Moniliophthora perniciosa FA553

Species: Moniliophthora perniciosa

Genus: Moniliophthora

Family: Marasmiaceae

Order: Agaricales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|297809053|ref|XP_002872410.1| hypothetical protein ARALYDRAFT_489767 [Arabidopsis lyrata subsp. lyrata] gi|297318247|gb|EFH48669.1| hypothetical protein ARALYDRAFT_489767 [Arabidopsis lyrata subsp. lyrata]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/159 (59%), Positives = 124/159 (77%), Gaps = 3/159 (1%)

Query: 1   MARTLLLIALCVLPALVSAVRPNPKPFSVEGRVYCDTCQAGFETPATTYI---AGAKVKV 57
           M++ +LL+ LC LP L  A RPN  PF V GRVYCDTC AGFETPA+TYI   +GA V++
Sbjct: 1   MSKAVLLVVLCFLPVLAIAARPNKNPFVVRGRVYCDTCLAGFETPASTYIHGTSGAVVRL 60

Query: 58  ECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSR 117
           ECKDR++M++ YS E +TDSTG+YKILV+EDH DQ CDA+LV S Q  C  V+PG +R+R
Sbjct: 61  ECKDRRTMELTYSHEARTDSTGSYKILVNEDHDDQFCDAMLVRSSQLRCSNVSPGHDRAR 120

Query: 118 VILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQE 156
           V LT +NGI+S+ R+AN+MGF++   M GCA++++LYQE
Sbjct: 121 VTLTRFNGIASDDRFANNMGFLRDAAMPGCADIMKLYQE 159

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:505006434	159	SAH7 "AT4G08685" [Arabidopsis	0.880	0.880	0.617	1.1e-46
TAIR|locus:2029456	171	AT1G78040 "AT1G78040" [Arabido	0.817	0.760	0.477	1.4e-30
TAIR|locus:2184103	164	AT5G10130 "AT5G10130" [Arabido	0.811	0.786	0.488	5.6e-29
TAIR|locus:2152440	174	AT5G45880 "AT5G45880" [Arabido	0.761	0.695	0.408	5.3e-24
TAIR|locus:2030022	171	AT1G29140 "AT1G29140" [Arabido	0.792	0.736	0.4	8.7e-24
TAIR|locus:505006496	172	AT4G18596 "AT4G18596" [Arabido	0.761	0.703	0.408	2.3e-23
TAIR|locus:2143241	401	AT5G15780 "AT5G15780" [Arabido	0.704	0.279	0.347	4.8e-07
TAIR|locus:2169682	183	MOP10 "AT5G05500" [Arabidopsis	0.490	0.426	0.359	4.8e-07
TAIR|locus:504955667	171	AT3G09925 "AT3G09925" [Arabido	0.553	0.514	0.298	0.0002
TAIR|locus:2059914	359	AT2G16630 [Arabidopsis thalian	0.729	0.323	0.282	0.00023

TAIR|locus:505006434 SAH7 "AT4G08685" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 87/141 (61%), Positives = 114/141 (80%)

Query:    19 AVRPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDST 78
             A RPN  PF V GRVYCDTC AGFETPA+TYI+GA V++ECKDR++M++ YS E +TDST
Sbjct:    19 AARPNKNPFVVRGRVYCDTCLAGFETPASTYISGAVVRLECKDRRTMELTYSHEARTDST 78

Query:    79 GTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGF 138
             G+YKILV+EDH +Q CDA+LV S Q  C  V+PG +R+RV LT +NGI+S+ R+AN+MGF
Sbjct:    79 GSYKILVNEDHDEQFCDAMLVRSSQLRCSNVSPGHDRARVTLTRFNGIASDDRFANNMGF 138

Query:   139 MKAEPMSGCAEVLRLYQE-ED 158
             ++   M GCA++++LYQE ED
Sbjct:   139 LRDAAMPGCADIMKLYQETED 159

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2029456 AT1G78040 "AT1G78040" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 63/132 (47%), Positives = 90/132 (68%)

Query:    29 VEGRVYCDTCQAGFETPATTY-IAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE 87
             V+G  YCD C+ GFETP ++Y I GA VK+ CKDRK+M+ VY+ +  +D  G YK +V +
Sbjct:    32 VQGSTYCDICKFGFETPESSYFIPGATVKLSCKDRKTMEEVYTDKAVSDKEGKYKFIVHD 91

Query:    88 DHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGC 147
             DH+DQ+CD +LV S    C  ++ GRE+SRVIL  Y+GI+S+ R+AN+MGF K      C
Sbjct:    92 DHRDQMCDVLLVKSSDKTCSKISVGREKSRVILNHYSGIASQIRHANNMGFEKEVSDVFC 151

Query:   148 AEVLRLYQ-EED 158
             + + + Y  +ED
Sbjct:   152 SALFQKYMVDED 163

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2184103 AT5G10130 "AT5G10130" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 63/129 (48%), Positives = 81/129 (62%)

Query:    26 PFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILV 85
             PF +EG VYCDTC+ GFET AT YI GA+V++ CKDR +++        T   G YK+ V
Sbjct:    27 PFHIEGSVYCDTCRFGFETIATQYIRGARVRIVCKDRVTLKSELVGVAVTGPDGKYKVAV 86

Query:    86 SEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMS 145
               D QDQ C A LV SP + C+   PGR  + VILT  NG +S   YAN+MGF + EP+ 
Sbjct:    87 RGDRQDQQCLAELVHSPLSRCQEADPGRSTATVILTRSNGAASTRHYANAMGFFRDEPLR 146

Query:   146 GCAEVLRLY 154
             GCA + + Y
Sbjct:   147 GCAALRKRY 155

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005615 "extracellular space" evidence=IEA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2152440 AT5G45880 "AT5G45880" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 51/125 (40%), Positives = 81/125 (64%)

Query:    27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86
             F ++G VYCDTC+  F T  + ++ GAKVK+EC+ R +  +  ++E  TD TG+YK+ V+
Sbjct:    35 FQIQGSVYCDTCRVQFVTRLSKFLEGAKVKLECRSRTNGTITLTKEAVTDKTGSYKMEVT 94

Query:    87 EDHQDQLCDAVLVSSPQNDCKTVAPG---RERSRVILTSYNGI-SSETRYANSMGFMKAE 142
              DH++++C+ VLV SP + C  V+     R  +++ LT+ +GI S ETR  N +GFM   
Sbjct:    95 GDHEEEVCELVLVQSPDSGCSDVSTEAYLRNAAKISLTANDGIVSHETRIVNPLGFMVQT 154

Query:   143 PMSGC 147
             P++ C
Sbjct:   155 PLADC 159

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005615 "extracellular space" evidence=IEA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2030022 AT1G29140 "AT1G29140" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 52/130 (40%), Positives = 84/130 (64%)

Query:    27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86
             F ++G VYCDTC+  F T  + ++ GAKVK+ECK R++  V  ++E  TD+ G Y++ V 
Sbjct:    32 FHIKGSVYCDTCRVQFITRISKFLEGAKVKLECKGRENQTVTLTKEAVTDNAGNYQMEVM 91

Query:    87 EDHQDQLCDAVLVSSPQNDCKTVAPG---RERSRVILTSYNGI-SSETRYANSMGFMKAE 142
              DH++++C+ VL+ SP  +C  V      R  +R+ LT+ +GI S+ETR  N +GFM+  
Sbjct:    92 GDHEEEVCEIVLLQSPDPECGDVNNQEFLRNAARISLTANDGIVSNETRTINPLGFMRKT 151

Query:   143 PMSGCAEVLR 152
             P++ C +V +
Sbjct:   152 PLAECPQVFK 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048046 "apoplast" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:505006496 AT4G18596 "AT4G18596" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 51/125 (40%), Positives = 80/125 (64%)

Query:    27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86
             F ++G VYCDTC+  F T  + ++ GAKVK+EC+ R +  V  ++E  TD TG+Y++ V+
Sbjct:    33 FQIQGSVYCDTCRVQFVTRLSKFLEGAKVKLECRSRTNGTVTLTKEAVTDKTGSYRMEVT 92

Query:    87 EDHQDQLCDAVLVSSPQNDCKTVAPG---RERSRVILTSYNGI-SSETRYANSMGFMKAE 142
              DH++++C+ VLV SP + C  V+     R  +++ LT+ +GI S ETR  N +GFM   
Sbjct:    93 GDHEEEVCELVLVESPDSGCSDVSKEAYLRNAAKISLTANDGIVSHETRIVNPLGFMVQT 152

Query:   143 PMSGC 147
             P + C
Sbjct:   153 PSAEC 157

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005615 "extracellular space" evidence=IEA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2143241 AT5G15780 "AT5G15780" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 42/121 (34%), Positives = 53/121 (43%)

Query:    29 VEGRVYCDTCQAG-FETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS- 86
             V G VYCDTC  G F       I+GA V VEC D  S +  + +E KTD  G +K+ +  
Sbjct:    42 VVGTVYCDTCFNGAFSKSPNHLISGALVAVECIDENS-KPSFRQEVKTDKRGEFKVKLPF 100

Query:    87 --EDHQDQL--CDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAE 142
                 H  ++  C   L+SS Q  C   +     S   L S N     TR   S GF    
Sbjct:   101 SVSKHVKKIKRCSVKLLSSSQPYCSIASSATSSSLKRLKS-NHHGENTRVF-SAGFFTFR 158

Query:   143 P 143
             P
Sbjct:   159 P 159

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2169682 MOP10 "AT5G05500" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 32/89 (35%), Positives = 45/89 (50%)

Query:    28 SVEGRVYCDTCQ--AGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTY---- 81
             +VEG VYC +C     +       IAGAK+ + CK+ +  QV + +  +TDS G +    
Sbjct:    44 AVEGMVYCQSCDKFGSWSLAGAEAIAGAKISIICKNHRQ-QVSFYKVFRTDSYGHFYGEL 102

Query:    82 ---KILVSE-DHQDQLCDAVLVSSPQNDC 106
                K+     DH    C A LVSSP+ DC
Sbjct:   103 KGFKMTPHFLDHPLHSCRAKLVSSPREDC 131

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:504955667 AT3G09925 "AT3G09925" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00020, P = 0.00020
 Identities = 29/97 (29%), Positives = 44/97 (45%)

Query:    18 SAVRPNPKPFSVEGRVYCDTCQAGFET--PATTYIAGAKVKVECKDRKSMQVVYSREGKT 75
             +A   N     V G+V C  C   ++     +  I GA V + C D +  +V Y     T
Sbjct:    27 TAAYNNGDKIHVAGKVMCQDCSLNYDEWINGSEPIKGAVVSITCMDERR-RVSYYGSDLT 85

Query:    76 DSTGTYKILVSE--DH----QDQLCDAVLVSSPQNDC 106
             D  G + ++V++   H    + QLC+  LVSSP   C
Sbjct:    86 DERGQFDLMVNKVLSHGKVLKPQLCNVRLVSSPDLSC 122

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2059914 AT2G16630 [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 0.00023, P = 0.00023
 Identities = 35/124 (28%), Positives = 56/124 (45%)

Query:    28 SVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE 87
             +V G V+CD C+ G  +     ++G K+ V C D    QV  SRE  T+  G Y +    
Sbjct:    29 TVTGSVFCDQCKDGERSLFDFPVSGIKISVTCADENG-QVYMSREETTNWLGGYVMRFDG 87

Query:    88 DHQDQLCDAVL----VSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEP 143
                   C A +    V    + C ++A G  +   ++ S+ GI  ET  A+++     +P
Sbjct:    88 TPDLSNCYAQVSDNGVQQDPSSC-SIASGPAQKLKLMFSFFGI--ETFAADALLAQPVQP 144

Query:   144 MSGC 147
              S C
Sbjct:   145 SSFC 148


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.128   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      159       146   0.00079  103 3  11 23  0.49    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  570 (61 KB)
  Total size of DFA:  138 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.99u 0.10s 15.09t   Elapsed:  00:00:01
  Total cpu time:  15.00u 0.10s 15.10t   Elapsed:  00:00:01
  Start:  Sat May 11 02:46:48 2013   End:  Sat May 11 02:46:49 2013

GO:0005576 "extracellular region" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_II1134 SubName- Full=Putative uncharacterized protein; (159 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
pfam01190	95	pfam01190, Pollen_Ole_e_I, Pollen proteins Ole e I	1e-23

>gnl|CDD|216353 pfam01190, Pollen_Ole_e_I, Pollen proteins Ole e I like

 Score = 87.9 bits (218), Expect = 1e-23
 Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 29  VEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSED 88
           VEG VYCDTC+A     +   + GAKVK+ECKD    +VV S E  TD  G +K+ +  D
Sbjct: 1   VEGSVYCDTCRASGFELSAYPLPGAKVKIECKDGDG-RVVTSAEAVTDEKGYFKVELPGD 59

Query: 89  -----HQDQLCDAVLVSSPQNDC-KTVAPGRERSRV 118
                H +  C A LVSSP + C          + +
Sbjct: 60  PSSLTHLESACRAKLVSSPDSACSAPTNGNGTGAPL 95

Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
PF01190	97	Pollen_Ole_e_I: Pollen proteins Ole e I like; Inte	99.93
PF13620	82	CarboxypepD_reg: Carboxypeptidase regulatory-like	96.43
PF13715	88	DUF4480: Domain of unknown function (DUF4480)	95.96
PF01060	80	DUF290: Transthyretin-like family; InterPro: IPR00	94.67
PF11974	97	MG1: Alpha-2-macroglobulin MG1 domain; InterPro: I	94.32
PF10670	215	DUF4198: Domain of unknown function (DUF4198)	93.68
PRK15036	137	hydroxyisourate hydrolase; Provisional	93.29
PF07210	85	DUF1416: Protein of unknown function (DUF1416); In	92.1
PF08400	134	phage_tail_N: Prophage tail fibre N-terminal; Inte	90.91
cd00421	146	intradiol_dioxygenase Intradiol dioxygenases catal	90.67
TIGR02438	281	catachol_actin catechol 1,2-dioxygenase, Actinobac	90.4
cd03858	374	M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub	88.93
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	88.93
PF08194	36	DIM: DIM protein; InterPro: IPR013172 Drosophila i	86.26
cd03863	375	M14_CPD_II The second carboxypeptidase (CP)-like d	85.92
cd03462	247	1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs)	85.7
KOG1948	1165	consensus Metalloproteinase-related collagenase pM	85.47
PF00775	183	Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th	85.2
cd03868	372	M14_CPD_I The first carboxypeptidase (CP)-like dom	84.82
cd03464	220	3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-	84.77
COG5266	264	CbiK ABC-type Co2+ transport system, periplasmic c	84.65
cd03461	277	1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) ca	84.45
cd03463	185	3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4	84.37
cd03459	158	3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD)	83.51
cd03866	376	M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM	83.3
TIGR02962	112	hdxy_isourate hydroxyisourate hydrolase. Members o	82.04
TIGR02422	220	protocat_beta protocatechuate 3,4-dioxygenase, bet	81.88
COG3485	226	PcaH Protocatechuate 3,4-dioxygenase beta subunit	81.58
TIGR02423	193	protocat_alph protocatechuate 3,4-dioxygenase, alp	81.47

>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=99.93  E-value=3.6e-26  Score=163.70  Aligned_cols=82  Identities=46%  Similarity=0.794  Sum_probs=74.9

Q ss_pred             EEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecCC------CcCcceEEEEccCC
Q 031458           29 VEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSED------HQDQLCDAVLVSSP  102 (159)
Q Consensus        29 V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~~------~~~~~C~v~LvsSP  102 (159)
                      |+|+||||+|+++++ ..++||+||+|+|+|+++ ++.+.++.+++||++|+|+|++|++      +..+.|+|+|++||
T Consensus         1 V~G~V~C~~C~~~~~-~~~~~l~GA~V~v~C~~~-~~~~~~~~~~~Td~~G~F~i~l~~~~~~~~~~~~~~C~v~l~~sp   78 (97)
T PF01190_consen    1 VEGVVYCDDCSSGFS-RAAKPLPGAKVSVECKDG-NGGVVFSAEAKTDENGYFSIELPSDPGSSSPHLSSSCRVKLVSSP   78 (97)
T ss_pred             CEEEEEeCCCCCCcc-ccCccCCCCEEEEECCCC-CCCcEEEEEEEeCCCCEEEEEecCccccccCCCCCCcEEEEeCCC
Confidence            799999999999776 788999999999999998 4557889999999999999999864      67899999999999


Q ss_pred             CCCCCCCCCC
Q 031458          103 QNDCKTVAPG  112 (159)
Q Consensus       103 ~~~C~~~t~~  112 (159)
                      ++.|+++++.
T Consensus        79 ~~~C~~~~~~   88 (97)
T PF01190_consen   79 DPSCNVPTNS   88 (97)
T ss_pred             cCcCCCCcCC
Confidence            9999999974

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.

>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A

Probab=96.43  E-value=0.0049  Score=41.37  Aligned_cols=45  Identities=22%  Similarity=0.278  Sum_probs=29.8

Q ss_pred             EEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEE-ecC
Q 031458           29 VEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKIL-VSE   87 (159)
Q Consensus        29 V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~-l~~   87 (159)
                      |.|+|.=.         ...||+||.|.|.=.+.  +.   .....||++|.|.+. ++.
T Consensus         2 I~G~V~d~---------~g~pv~~a~V~l~~~~~--~~---~~~~~Td~~G~f~~~~l~~   47 (82)
T PF13620_consen    2 ISGTVTDA---------TGQPVPGATVTLTDQDG--GT---VYTTTTDSDGRFSFEGLPP   47 (82)
T ss_dssp             EEEEEEET---------TSCBHTT-EEEET--TT--TE---CCEEE--TTSEEEEEEE-S
T ss_pred             EEEEEEcC---------CCCCcCCEEEEEEEeeC--CC---EEEEEECCCceEEEEccCC
Confidence            78888832         24699999999987654  22   357899999999998 764

>PF13715 DUF4480: Domain of unknown function (DUF4480)

Probab=95.96  E-value=0.02  Score=39.12  Aligned_cols=42  Identities=26%  Similarity=0.464  Sum_probs=31.0

Q ss_pred             EEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecC
Q 031458           29 VEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE   87 (159)
Q Consensus        29 V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~   87 (159)
                      |.|.|. |       .....||+||.|.+.=.+         ....||++|+|.|.++.
T Consensus         2 i~G~V~-d-------~~t~~pl~~a~V~~~~~~---------~~~~Td~~G~F~i~~~~   43 (88)
T PF13715_consen    2 ISGKVV-D-------SDTGEPLPGATVYLKNTK---------KGTVTDENGRFSIKLPE   43 (88)
T ss_pred             EEEEEE-E-------CCCCCCccCeEEEEeCCc---------ceEEECCCeEEEEEEcC
Confidence            678877 1       112579999999987222         34789999999999874

>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []

Probab=94.67  E-value=0.11  Score=35.70  Aligned_cols=46  Identities=28%  Similarity=0.283  Sum_probs=34.5

Q ss_pred             EEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458           30 EGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS   86 (159)
Q Consensus        30 ~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~   86 (159)
                      .|+..|.          ..|.+|++|+|-=++.. ..-..-.+..||++|+|.|.-.
T Consensus         1 ~G~L~C~----------~~P~~~~~V~L~e~d~~-~~Ddll~~~~Td~~G~F~l~G~   46 (80)
T PF01060_consen    1 KGQLMCG----------GKPAKNVKVKLWEDDYF-DPDDLLDETKTDSDGNFELSGS   46 (80)
T ss_pred             CeEEEeC----------CccCCCCEEEEEECCCC-CCCceeEEEEECCCceEEEEEE
Confidence            3788884          36999999999888762 1112246799999999999864

The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space

>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin []

Probab=94.32  E-value=0.075  Score=37.99  Aligned_cols=37  Identities=32%  Similarity=0.329  Sum_probs=27.9

Q ss_pred             CccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458           46 ATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS   86 (159)
Q Consensus        46 ~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~   86 (159)
                      ...|++||+|+|-=. . ++++  -.+++||++|...+...
T Consensus        24 tg~Pv~ga~V~l~~~-~-~~~~--l~~g~TD~~G~a~~~~~   60 (97)
T PF11974_consen   24 TGKPVAGAEVELYDS-R-NGQV--LASGKTDADGFASFDST   60 (97)
T ss_pred             CCCccCCCEEEEEEC-C-CCcE--eeeeeeCCCceEEecCC
Confidence            468999999999530 2 2333  37899999999998876

>PF10670 DUF4198: Domain of unknown function (DUF4198)

Probab=93.68  E-value=0.12  Score=40.56  Aligned_cols=42  Identities=19%  Similarity=0.096  Sum_probs=32.4

Q ss_pred             CccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecC
Q 031458           46 ATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE   87 (159)
Q Consensus        46 ~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~   87 (159)
                      ..+|++||+|.+.-.+.............||++|.+.|.++.
T Consensus       160 ~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~  201 (215)
T PF10670_consen  160 DGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPR  201 (215)
T ss_pred             CCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCC
Confidence            357999999999999863211112467899999999999974

>PRK15036 hydroxyisourate hydrolase; Provisional

Probab=93.29  E-value=0.74  Score=35.10  Aligned_cols=49  Identities=20%  Similarity=0.154  Sum_probs=35.4

Q ss_pred             EEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458           28 SVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS   86 (159)
Q Consensus        28 ~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~   86 (159)
                      .|.|.|.        ++....|.+|.+|+|+=.+. .+... ..++.||++|.|...++
T Consensus        28 ~Is~HVL--------Dt~~G~PA~gV~V~L~~~~~-~~w~~-l~~~~Td~dGR~~~l~~   76 (137)
T PRK15036         28 ILSVHIL--------NQQTGKPAADVTVTLEKKAD-NGWLQ-LNTAKTDKDGRIKALWP   76 (137)
T ss_pred             CeEEEEE--------eCCCCcCCCCCEEEEEEccC-CceEE-EEEEEECCCCCCccccC
Confidence            4888888        23456899999999975543 23232 47899999999986444

>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length

Probab=92.10  E-value=0.74  Score=32.52  Aligned_cols=57  Identities=21%  Similarity=0.309  Sum_probs=41.9

Q ss_pred             CCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEe-cCCCcCcceEEEEccC
Q 031458           25 KPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILV-SEDHQDQLCDAVLVSS  101 (159)
Q Consensus        25 ~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l-~~~~~~~~C~v~LvsS  101 (159)
                      +..+|+|+|. .         ...|++||.|+|-=...   +  |..+-.|+++|.|+.-. |+.     ..++.+++
T Consensus         6 ke~VItG~V~-~---------~G~Pv~gAyVRLLD~sg---E--FtaEvvts~~G~FRFfaapG~-----WtvRal~~   63 (85)
T PF07210_consen    6 KETVITGRVT-R---------DGEPVGGAYVRLLDSSG---E--FTAEVVTSATGDFRFFAAPGS-----WTVRALSR   63 (85)
T ss_pred             ceEEEEEEEe-c---------CCcCCCCeEEEEEcCCC---C--eEEEEEecCCccEEEEeCCCc-----eEEEEEcc
Confidence            3579999998 2         23599999999975543   2  46899999999999765 343     66665544

Members of this family appear to be Actinomycete specific. The function of this family is unknown.

>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein

Probab=90.91  E-value=1.7  Score=33.12  Aligned_cols=43  Identities=16%  Similarity=0.168  Sum_probs=33.9

Q ss_pred             CCccccCCCEEEEEecCCCCceE--EEEEEEEcCCCceEEEEec-CC
Q 031458           45 PATTYIAGAKVKVECKDRKSMQV--VYSREGKTDSTGTYKILVS-ED   88 (159)
Q Consensus        45 ~~~~pi~GA~V~v~C~~~~~~~v--~~~~~~~TD~~G~F~i~l~-~~   88 (159)
                      ...+|++|+.+.|.=+... ..+  .+.....||+.|+|.+++. +.
T Consensus        12 g~G~pv~g~~I~L~A~~tS-~~Vv~~t~as~~t~~~G~Ys~~~epG~   57 (134)
T PF08400_consen   12 GAGKPVPGCTITLKARRTS-STVVVGTVASVVTGEAGEYSFDVEPGV   57 (134)
T ss_pred             CCCCcCCCCEEEEEEccCc-hheEEEEEEEEEcCCCceEEEEecCCe
Confidence            3468999999999998863 333  3467889999999999985 44

The characteristics of the protein distribution suggest prophage matches.

>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates

Probab=90.67  E-value=1.2  Score=33.95  Aligned_cols=58  Identities=17%  Similarity=0.208  Sum_probs=41.4

Q ss_pred             CCCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceE------------EEEEEEEcCCCceEEEEe--cCC
Q 031458           23 NPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQV------------VYSREGKTDSTGTYKILV--SED   88 (159)
Q Consensus        23 ~~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v------------~~~~~~~TD~~G~F~i~l--~~~   88 (159)
                      .+.++.|.|+|.=.         ...|++||.|.|---+. +|..            .......||++|.|.+..  |+.
T Consensus         8 ~G~~l~l~G~V~D~---------~g~pv~~A~VeiW~~d~-~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~   77 (146)
T cd00421           8 PGEPLTLTGTVLDG---------DGCPVPDALVEIWQADA-DGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGP   77 (146)
T ss_pred             CCCEEEEEEEEECC---------CCCCCCCcEEEEEecCC-CCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCC
Confidence            34679999999922         23699999999987776 2221            235678999999999863  554


Q ss_pred             Cc
Q 031458           89 HQ   90 (159)
Q Consensus        89 ~~   90 (159)
                      ..
T Consensus        78 Y~   79 (146)
T cd00421          78 YP   79 (146)
T ss_pred             CC
Confidence            33

This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.

>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial

Probab=90.40  E-value=1  Score=38.34  Aligned_cols=50  Identities=26%  Similarity=0.292  Sum_probs=35.8

Q ss_pred             CCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceE----------EEEEEEEcCCCceEEEE
Q 031458           25 KPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQV----------VYSREGKTDSTGTYKIL   84 (159)
Q Consensus        25 ~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v----------~~~~~~~TD~~G~F~i~   84 (159)
                      .++.|+|+|. |.        ...||+||.|-|=..|. +|..          .+.....||++|.|.+.
T Consensus       131 ~pl~v~G~V~-D~--------~G~Pv~gA~VdiWqada-~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~  190 (281)
T TIGR02438       131 TPLVFSGQVT-DL--------DGNGLAGAKVELWHADD-DGFYSQFAPGIPEWNLRGTIIADDEGRFEIT  190 (281)
T ss_pred             CEEEEEEEEE-cC--------CCCCcCCCEEEEEecCC-CCCcCCCCCCCCCCCCeEEEEeCCCCCEEEE
Confidence            4688999998 31        23699999999955554 2332          23567899999998875

Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.

>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs)

Probab=88.93  E-value=0.97  Score=39.29  Aligned_cols=41  Identities=27%  Similarity=0.286  Sum_probs=31.6

Q ss_pred             EEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458           28 SVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS   86 (159)
Q Consensus        28 ~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~   86 (159)
                      .|.|.|.-.         ...||+||+|.|+  +.       .....||++|.|.+.++
T Consensus       299 ~i~G~V~d~---------~g~pl~~A~V~i~--~~-------~~~~~Td~~G~f~~~l~  339 (374)
T cd03858         299 GIKGFVRDA---------NGNPIANATISVE--GI-------NHDVTTAEDGDYWRLLL  339 (374)
T ss_pred             ceEEEEECC---------CCCccCCeEEEEe--cc-------eeeeEECCCceEEEecC
Confidence            789999843         1359999999993  21       23568999999999876

The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=88.93  E-value=0.78  Score=29.78  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=24.7

Q ss_pred             cCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEE-ec
Q 031458           50 IAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKIL-VS   86 (159)
Q Consensus        50 i~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~-l~   86 (159)
                      |+||++.|.-.+..  .+ ...+..||++|.|.+. |+
T Consensus         1 L~Ga~f~L~~~~~~--~~-~~~~~~Td~~G~~~f~~L~   35 (70)
T PF05738_consen    1 LAGATFELYDEDGN--EV-IEVTVTTDENGKYTFKNLP   35 (70)
T ss_dssp             -STEEEEEEETTSE--EE-EEEEEEGGTTSEEEEEEEE
T ss_pred             CCCeEEEEEECCCC--EE-EEEEEEECCCCEEEEeecC
Confidence            68999999988762  12 1126899999999997 43

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []

Probab=86.26  E-value=0.96  Score=27.02  Aligned_cols=21  Identities=33%  Similarity=0.751  Sum_probs=12.9

Q ss_pred             hhhcccCCCCCeEEEEEEEcccC
Q 031458           16 LVSAVRPNPKPFSVEGRVYCDTC   38 (159)
Q Consensus        16 ~~~~~~~~~~~~~V~G~VyCd~C   38 (159)
                      ++++....++.++|.|.  |.+|
T Consensus        15 l~~a~~~~pG~ViING~--C~dC   35 (36)
T PF08194_consen   15 LAAAVPATPGNVIINGK--CIDC   35 (36)
T ss_pred             HHhcccCCCCeEEECce--eeeC
Confidence            34444333566899884  7777

This entry includes DIMs 1 to 4 and DIM23.

>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3

Probab=85.92  E-value=1.4  Score=38.74  Aligned_cols=44  Identities=23%  Similarity=0.135  Sum_probs=32.5

Q ss_pred             eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecC
Q 031458           27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE   87 (159)
Q Consensus        27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~   87 (159)
                      ..|.|.|.=+        ....||+||+|.|+=.+         ...+||.+|.|.+.++.
T Consensus       297 ~gI~G~V~D~--------~~g~pl~~AtV~V~g~~---------~~~~Td~~G~f~~~l~p  340 (375)
T cd03863         297 RGVRGFVLDA--------TDGRGILNATISVADIN---------HPVTTYKDGDYWRLLVP  340 (375)
T ss_pred             CeEEEEEEeC--------CCCCCCCCeEEEEecCc---------CceEECCCccEEEccCC
Confidence            4799999821        12469999999997221         23579999999998763

4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac

>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups

Probab=85.70  E-value=2.9  Score=34.99  Aligned_cols=52  Identities=29%  Similarity=0.371  Sum_probs=37.2

Q ss_pred             CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCce----------EEEEEEEEcCCCceEEEEe
Q 031458           24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQ----------VVYSREGKTDSTGTYKILV   85 (159)
Q Consensus        24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~----------v~~~~~~~TD~~G~F~i~l   85 (159)
                      +.++.|+|+|. |.        ...||+||.|-|=-.|. +|.          ..+.....||++|.|.+..
T Consensus        97 G~~l~l~G~V~-D~--------~G~Pv~~A~VeiWqad~-~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~T  158 (247)
T cd03462          97 HKPLLFRGTVK-DL--------AGAPVAGAVIDVWHSTP-DGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRT  158 (247)
T ss_pred             CCEEEEEEEEE-cC--------CCCCcCCcEEEEECCCC-CCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEE
Confidence            34689999998 31        23599999999976665 232          2235677899999998863

This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.

>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]

Probab=85.47  E-value=1.2  Score=43.47  Aligned_cols=41  Identities=41%  Similarity=0.545  Sum_probs=31.3

Q ss_pred             eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEe
Q 031458           27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILV   85 (159)
Q Consensus        27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l   85 (159)
                      +.|.|+|.=        +....|++||+|.|.=+          ..++||+.|||+++-
T Consensus       316 fSvtGRVl~--------g~~g~~l~gvvvlvngk----------~~~kTdaqGyykLen  356 (1165)
T KOG1948|consen  316 FSVTGRVLV--------GSKGLPLSGVVVLVNGK----------SGGKTDAQGYYKLEN  356 (1165)
T ss_pred             EEeeeeEEe--------CCCCCCccceEEEEcCc----------ccceEcccceEEeee
Confidence            567788872        24567999999998433          347999999999975

>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases

Probab=85.20  E-value=1.6  Score=34.75  Aligned_cols=53  Identities=21%  Similarity=0.304  Sum_probs=35.6

Q ss_pred             CCCCeEEEEEEEcccCCCCCCCCCccccCCCEEEE-EecCCC------Cc----eEEEEEEEEcCCCceEEEE
Q 031458           23 NPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKV-ECKDRK------SM----QVVYSREGKTDSTGTYKIL   84 (159)
Q Consensus        23 ~~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v-~C~~~~------~~----~v~~~~~~~TD~~G~F~i~   84 (159)
                      .+.++.|.|+|+=.+|         .||+||.|-| +|....      .+    ...+.....||++|.|.+.
T Consensus        26 ~G~~l~l~G~V~D~~g---------~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~   89 (183)
T PF00775_consen   26 PGEPLVLHGRVIDTDG---------KPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFR   89 (183)
T ss_dssp             SS-EEEEEEEEEETTS---------SB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEE
T ss_pred             CCCEEEEEEEEECCCC---------CCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEE
Confidence            3457999999994333         5999999999 887542      00    1234578899999999865

Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....

>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3

Probab=84.82  E-value=1.7  Score=37.87  Aligned_cols=42  Identities=26%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458           27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS   86 (159)
Q Consensus        27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~   86 (159)
                      ..|.|.|.=         ....|++||+|.|+-.+         ....||++|.|...++
T Consensus       296 ~~i~G~V~d---------~~g~pv~~A~V~v~~~~---------~~~~td~~G~y~~~l~  337 (372)
T cd03868         296 IGVKGFVRD---------ASGNPIEDATIMVAGID---------HNVTTAKFGDYWRLLL  337 (372)
T ss_pred             CceEEEEEc---------CCCCcCCCcEEEEEecc---------cceEeCCCceEEecCC
Confidence            368999981         12369999999997433         2359999999986665

4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p

>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit

Probab=84.77  E-value=4.3  Score=33.39  Aligned_cols=52  Identities=17%  Similarity=0.175  Sum_probs=37.1

Q ss_pred             CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEE---------------EEEEEEcCCCceEEEEe
Q 031458           24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVV---------------YSREGKTDSTGTYKILV   85 (159)
Q Consensus        24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~---------------~~~~~~TD~~G~F~i~l   85 (159)
                      +.++.|+|+|+=.+         ..||+||.|.|=--|. +|...               ......||++|.|.+..
T Consensus        63 G~~i~l~G~V~D~~---------G~PV~~A~VEIWQad~-~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~T  129 (220)
T cd03464          63 GERIIVHGRVLDED---------GRPVPNTLVEIWQANA-AGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRT  129 (220)
T ss_pred             CCEEEEEEEEECCC---------CCCCCCCEEEEEecCC-CCcccCccCCcccccCCCCCCEEEEEECCCccEEEEE
Confidence            45699999999322         3599999999976655 23221               24566999999998863

3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.

>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]

Probab=84.65  E-value=1.7  Score=36.66  Aligned_cols=40  Identities=20%  Similarity=0.132  Sum_probs=28.6

Q ss_pred             ccccCCCEEEEEecCC-------CCce-EEEEEEEEcCCCceEEEEec
Q 031458           47 TTYIAGAKVKVECKDR-------KSMQ-VVYSREGKTDSTGTYKILVS   86 (159)
Q Consensus        47 ~~pi~GA~V~v~C~~~-------~~~~-v~~~~~~~TD~~G~F~i~l~   86 (159)
                      .+|++||+|.++-.+.       .++. ..-.....||.+|+|.+...
T Consensus       182 GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~  229 (264)
T COG5266         182 GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPL  229 (264)
T ss_pred             CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEc
Confidence            5799999999995541       1111 11136789999999999865

>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates

Probab=84.45  E-value=3.5  Score=35.04  Aligned_cols=51  Identities=31%  Similarity=0.330  Sum_probs=37.0

Q ss_pred             CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCce----------EEEEEEEEcCCCceEEEE
Q 031458           24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQ----------VVYSREGKTDSTGTYKIL   84 (159)
Q Consensus        24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~----------v~~~~~~~TD~~G~F~i~   84 (159)
                      +.++.|+|+|. |.        ...||+||.|-|=-.|.. |.          ......-.||++|.|...
T Consensus       118 G~~l~v~G~V~-D~--------~G~Pv~gA~VeiWqad~~-G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~  178 (277)
T cd03461         118 GEPCFVHGRVT-DT--------DGKPLPGATVDVWQADPN-GLYDVQDPDQPEFNLRGKFRTDEDGRYAFR  178 (277)
T ss_pred             CCEEEEEEEEE-cC--------CCCCcCCcEEEEECcCCC-CCcCCCCCCCCCCCCeEEEEeCCCCCEEEE
Confidence            34689999999 31        236999999999776652 21          223567899999998875

1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.

>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit

Probab=84.37  E-value=4  Score=32.62  Aligned_cols=52  Identities=19%  Similarity=0.263  Sum_probs=37.4

Q ss_pred             CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceE------------EE--EEEEEcCCCceEEEEe
Q 031458           24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQV------------VY--SREGKTDSTGTYKILV   85 (159)
Q Consensus        24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v------------~~--~~~~~TD~~G~F~i~l   85 (159)
                      +.++.|+|+|.=..         ..||+||.|-|=.-|.. |..            .|  ...-.||++|.|....
T Consensus        34 G~~l~l~G~V~D~~---------g~Pi~gA~VeiWqad~~-G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~T   99 (185)
T cd03463          34 GERITLEGRVYDGD---------GAPVPDAMLEIWQADAA-GRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTT   99 (185)
T ss_pred             CCEEEEEEEEECCC---------CCCCCCCEEEEEcCCCC-CccCCcCCcccccCCCCCcEEEEEECCCCCEEEEE
Confidence            45799999999222         35999999999777652 211            22  3456799999999864

3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.

>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate

Probab=83.51  E-value=4.8  Score=31.24  Aligned_cols=52  Identities=21%  Similarity=0.217  Sum_probs=37.5

Q ss_pred             CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceE-------------EE--EEEEEcCCCceEEEEe
Q 031458           24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQV-------------VY--SREGKTDSTGTYKILV   85 (159)
Q Consensus        24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v-------------~~--~~~~~TD~~G~F~i~l   85 (159)
                      +.++.|+|+|.=.+         ..||+||.|.|=--|.. |..             .|  .....||++|.|.+..
T Consensus        13 G~~l~l~g~V~D~~---------g~Pv~~A~veiWqad~~-G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~T   79 (158)
T cd03459          13 GERIILEGRVLDGD---------GRPVPDALVEIWQADAA-GRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRT   79 (158)
T ss_pred             CcEEEEEEEEECCC---------CCCCCCCEEEEEccCCC-CccCCccCCcccccCCCCCceeEEEECCCCcEEEEE
Confidence            35799999999332         35999999999766652 211             22  3567899999999864

3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.

>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs)

Probab=83.30  E-value=3.1  Score=36.60  Aligned_cols=44  Identities=30%  Similarity=0.459  Sum_probs=31.6

Q ss_pred             eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458           27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS   86 (159)
Q Consensus        27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~   86 (159)
                      ..|.|.|. |.        ...||+||+|.|+  +.  ..   .....||++|.|.+.++
T Consensus       295 ~gI~G~V~-D~--------~g~pi~~A~V~v~--g~--~~---~~~~~T~~~G~y~~~l~  338 (376)
T cd03866         295 LGVKGQVF-DS--------NGNPIPNAIVEVK--GR--KH---ICPYRTNVNGEYFLLLL  338 (376)
T ss_pred             CceEEEEE-CC--------CCCccCCeEEEEE--cC--Cc---eeEEEECCCceEEEecC
Confidence            46999998 42        1259999999997  22  11   12458999999988765

The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont

>TIGR02962 hdxy_isourate hydroxyisourate hydrolase

Probab=82.04  E-value=4.9  Score=29.59  Aligned_cols=41  Identities=24%  Similarity=0.160  Sum_probs=30.2

Q ss_pred             CCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458           44 TPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS   86 (159)
Q Consensus        44 t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~   86 (159)
                      +....|-+|+.|.|...+.+ +.. ...++.||++|...-.++
T Consensus        10 t~~G~PAagv~V~L~~~~~~-~~~-~i~~~~Tn~DGR~~~~l~   50 (112)
T TIGR02962        10 TTSGKPAAGVPVTLYRLDGS-GWT-PLAEGVTNADGRCPDLLP   50 (112)
T ss_pred             CCCCccCCCCEEEEEEecCC-CeE-EEEEEEECCCCCCcCccc
Confidence            34568999999999987652 322 346899999999875444

Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.

>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit

Probab=81.88  E-value=6.4  Score=32.32  Aligned_cols=52  Identities=21%  Similarity=0.174  Sum_probs=36.8

Q ss_pred             CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEE---------------EEEEEEcCCCceEEEEe
Q 031458           24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVV---------------YSREGKTDSTGTYKILV   85 (159)
Q Consensus        24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~---------------~~~~~~TD~~G~F~i~l   85 (159)
                      +.++.|+|+|.=..         ..||+||.|.|=--|. +|...               ......||++|.|.+..
T Consensus        58 G~~i~l~G~V~D~~---------g~PV~~A~VEIWQada-~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~T  124 (220)
T TIGR02422        58 GERIIVHGRVLDED---------GRPVPNTLVEVWQANA-AGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRT  124 (220)
T ss_pred             CCEEEEEEEEECCC---------CCCCCCCEEEEEecCC-CCcccCccCccccccCCCCCCEEEEEECCCccEEEEE
Confidence            34699999999322         3599999999966654 22211               24567799999998863

This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.

>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=81.58  E-value=6.3  Score=32.57  Aligned_cols=50  Identities=20%  Similarity=0.248  Sum_probs=37.6

Q ss_pred             CCeEEEEEEEcccCCCCCCCCCccccCCCEEEE-EecCCCCceEE--------------EEEEEEcCCCceEEEEe
Q 031458           25 KPFSVEGRVYCDTCQAGFETPATTYIAGAKVKV-ECKDRKSMQVV--------------YSREGKTDSTGTYKILV   85 (159)
Q Consensus        25 ~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v-~C~~~~~~~v~--------------~~~~~~TD~~G~F~i~l   85 (159)
                      .++.|+|+|+=..         ..|++||.|.| +|...  |+..              -.....||++|.|...-
T Consensus        71 e~i~l~G~VlD~~---------G~Pv~~A~VEiWQAda~--GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~T  135 (226)
T COG3485          71 ERILLEGRVLDGN---------GRPVPDALVEIWQADAD--GRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRT  135 (226)
T ss_pred             ceEEEEEEEECCC---------CCCCCCCEEEEEEcCCC--CcccCccccccCcCccccceEEEEeCCCceEEEEE
Confidence            5799999999444         36999999999 66544  2222              35677899999999863

>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit

Probab=81.47  E-value=5.9  Score=31.85  Aligned_cols=52  Identities=19%  Similarity=0.243  Sum_probs=36.7

Q ss_pred             CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceE-------------EE--EEEEEcCCCceEEEEe
Q 031458           24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQV-------------VY--SREGKTDSTGTYKILV   85 (159)
Q Consensus        24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v-------------~~--~~~~~TD~~G~F~i~l   85 (159)
                      +.++.|.|+|. |.        ...||+||.|-|=--|.. |..             .|  .....||++|.|.+..
T Consensus        37 G~~l~l~G~V~-D~--------~g~Pv~~A~VeiWqad~~-G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~T  103 (193)
T TIGR02423        37 GERIRLEGRVL-DG--------DGHPVPDALIEIWQADAA-GRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFET  103 (193)
T ss_pred             CCEEEEEEEEE-CC--------CCCCCCCCEEEEEccCCC-CccCCccCCcccccCCCCCCeEEEEECCCCCEEEEE
Confidence            45799999999 32        135999999999766541 221             11  3456899999998863

This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
3e8v_A	82	Possible transglutaminase-family protein; structur	93.78
3irp_X	429	URO-adherence factor A; DEV-IGG fold, cell WALL, h	93.36
3uaf_A	117	TTR-52; beta barrel/sandwich, cell engulfment, sec	92.99
3kcp_A	321	Cellulosomal-scaffolding protein A; dockerin, X-mo	89.33
4ank_A	147	Transthyretin; hormone binding protein, thyroxine	86.3
1uwy_A	426	Carboxypeptidase M; metallopeptidase, GPI-anchor,	85.79
3mn8_A	435	LP15968P; catalytic domain of alpha/beta-hydrolase	85.72
2boy_A	254	3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi	84.35
2bum_A	209	Protocatechuate 3,4-dioxygenase alpha chain; oxido	83.35
1h8l_A	380	Carboxypeptidase GP180 residues 503-882; hydrolase	82.1
2nsm_A	439	Carboxypeptidase N catalytic chain; caroxypeptidas	81.9
3t63_M	238	3,4-PCD, protocatechuate 3,4-dioxygenase beta chai	81.58

>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}

Probab=93.78  E-value=0.17  Score=34.58  Aligned_cols=39  Identities=15%  Similarity=0.176  Sum_probs=31.8

Q ss_pred             CCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEe
Q 031458           45 PATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILV   85 (159)
Q Consensus        45 ~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l   85 (159)
                      ...+|.+||+|.++=-|- . ...-...-.||++|+|.+..
T Consensus        10 ~~GkPV~gA~Vefe~yNy-a-e~~~~~~~~TD~~G~~s~~~   48 (82)
T 3e8v_A           10 AEGQPVADATVEFKVYNY-A-EFYTVATKHTDRSGHASLTA   48 (82)
T ss_dssp             TTSCBCTTCEEEEEEEET-T-EEEEEEEEECCTTSEEEEEC
T ss_pred             CCCCCCCCCEEEEEEEEc-h-heeEEEEEEECCCceEEEEE
Confidence            346899999999999987 2 33335778999999999998

>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X

Probab=93.36  E-value=0.32  Score=42.31  Aligned_cols=56  Identities=23%  Similarity=0.273  Sum_probs=43.9

Q ss_pred             CeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEE-ec
Q 031458           26 PFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKIL-VS   86 (159)
Q Consensus        26 ~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~-l~   86 (159)
                      ...|.|+||-|.=+.|-....-.+|+|++|.|.  +. ++.+.  ...+||++|+|... |+
T Consensus       305 ~~~igg~Vw~D~n~nG~~D~~e~gl~gv~v~L~--d~-~G~~v--~tttTd~~G~Y~F~~L~  361 (429)
T 3irp_X          305 FGGFGGYVWFDKNNDGVQNDSNAAAAGITVNLL--DP-TGIRL--ATTTTDITGHYNFDNLT  361 (429)
T ss_dssp             EEEEEEEEEECTTSSSSSCCSSCBCTTCEEEEE--CT-TSCEE--EEEECCTTSEEEEEEEE
T ss_pred             eEEEccEEEEeCCCCCCcCcCCCCcCCeEEEEE--cC-CCCEE--EEEEeCCCCeEEeCCCC
Confidence            378999999998666666566689999999997  43 45543  67899999999986 44

>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}

Probab=92.99  E-value=0.055  Score=39.20  Aligned_cols=51  Identities=10%  Similarity=0.070  Sum_probs=32.3

Q ss_pred             CeEEEEEEEcccCCCCCCCCCcccc--CCCEEEEEecCCCC-ceEEEEEEEEcCCCceEEEEec
Q 031458           26 PFSVEGRVYCDTCQAGFETPATTYI--AGAKVKVECKDRKS-MQVVYSREGKTDSTGTYKILVS   86 (159)
Q Consensus        26 ~~~V~G~VyCd~C~~g~~t~~~~pi--~GA~V~v~C~~~~~-~~v~~~~~~~TD~~G~F~i~l~   86 (159)
                      .+.|.|+..|.          ..|-  .+++|+|-=.+... ..-..-.+..||++|+|.|.-.
T Consensus         4 sV~V~G~L~C~----------~~Pa~~~~V~V~L~d~~~~~~d~Ddll~~~~Td~~G~F~l~G~   57 (117)
T 3uaf_A            4 CLMATGVLKCP----------TDPEAVKKVHIDLWDAAAAAAESDDLMGRTWSDRNGNFQVTGC   57 (117)
T ss_dssp             EEEEEEEEECT----------TCGGGGSSCEEEEEEHHHHHTTSCCEEEEEECCTTSEEEEEEE
T ss_pred             EEEEEEEEEeC----------CccCCCCCEEEEEEecccccCCchHhheeeEECCCCEEEEEEE
Confidence            48999999994          2464  46666654211100 0011236889999999999864

>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B

Probab=89.33  E-value=0.34  Score=40.73  Aligned_cols=51  Identities=27%  Similarity=0.245  Sum_probs=37.7

Q ss_pred             CeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEE-EecC
Q 031458           26 PFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKI-LVSE   87 (159)
Q Consensus        26 ~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i-~l~~   87 (159)
                      ...|.|+|.++-=  ..++...+.=.|++|.|.=.+.         .++||++|||+| .+|.
T Consensus       157 ~~~vsGYi~~~~~--~~~~~~~~~~~G~~V~i~gt~~---------sa~tD~~G~f~I~~vp~  208 (321)
T 3kcp_A          157 GYKVSGYILPDFS--FDATVAPLVKAGFKVEIVGTEL---------YAVTDANGYFEITGVPA  208 (321)
T ss_dssp             SEEEEEEEEESSC--CCTTTHHHHHSCCEEEETTSSC---------EEECCTTSEEEEEEECC
T ss_pred             CceEEEEEccccc--cccccchhccCCcEEEEEeccc---------eeEECCCceEEEeccCC
Confidence            3789999999742  2223445778999999975542         689999999999 4763

>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}

Probab=86.30  E-value=2.1  Score=32.04  Aligned_cols=38  Identities=18%  Similarity=0.054  Sum_probs=28.5

Q ss_pred             CCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEE
Q 031458           44 TPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYK   82 (159)
Q Consensus        44 t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~   82 (159)
                      +....|-+|..|+|.=.+.+ +.-..-.++.||++|...
T Consensus        39 t~~G~PA~gv~V~L~~~~~~-~~~~~l~~~~Td~DGR~~   76 (147)
T 4ank_A           39 AVRGSPAINVAVHVFRKAAD-DTWEPFASGKTSESGELH   76 (147)
T ss_dssp             TTTTEECCSCEEEEEEECTT-SCEEEEEEEECCTTSEEC
T ss_pred             CCCCcCCCCCEEEEEEECCC-CCeEEEEEEEeCCCCCCC
Confidence            34568999999999877653 333445799999999865

>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1

Probab=85.79  E-value=0.53  Score=40.40  Aligned_cols=44  Identities=23%  Similarity=0.406  Sum_probs=31.4

Q ss_pred             EEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecC
Q 031458           28 SVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE   87 (159)
Q Consensus        28 ~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~   87 (159)
                      .|.|.|. |        ....||+||.|.|+=.+.  +     ....||++|.|.+.++.
T Consensus       297 ~I~G~V~-D--------~~g~pi~gA~V~v~g~~~--~-----~~~~Td~~G~y~~~l~~  340 (426)
T 1uwy_A          297 GVKGQVF-D--------QNGNPLPNVIVEVQDRKH--I-----CPYRTNKYGEYYLLLLP  340 (426)
T ss_dssp             SEEEEEE-C--------TTSCBCCSCEEEETTCCC--S-----SCCBCCTTCEEEECCCS
T ss_pred             eeEEEEE-C--------CCCCccCceEEEEEeccc--c-----ceeEeCCCCEEEeccCC
Confidence            6999996 2        123699999999964332  1     13589999999987653

>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}

Probab=85.72  E-value=0.84  Score=39.34  Aligned_cols=42  Identities=29%  Similarity=0.328  Sum_probs=30.2

Q ss_pred             EEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458           28 SVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS   86 (159)
Q Consensus        28 ~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~   86 (159)
                      .|.|.|. |.        ...||+||+|.|.  +. +.     ...+||++|.|.+.++
T Consensus       338 gv~G~V~-D~--------~G~pi~gA~V~v~--g~-~~-----~~~~Td~~G~y~~~l~  379 (435)
T 3mn8_A          338 GIKGLVT-DA--------SGFPIADANVYVA--GL-EE-----KPMRTSKRGEYWRLLT  379 (435)
T ss_dssp             SEEEEEE-CS--------SSCBCTTCEEEET--TC-TT-----SCEECCTTCEEEECCC
T ss_pred             eeEEEEE-CC--------CCCccCceEEEEe--cc-cc-----cceEeCCCCeEEEecC
Confidence            5999997 21        2359999999993  31 01     1358999999988765

>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}

Probab=84.35  E-value=2.2  Score=34.64  Aligned_cols=51  Identities=14%  Similarity=0.188  Sum_probs=35.5

Q ss_pred             CCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEE----------EEEEEEcCCCceEEEEe
Q 031458           25 KPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVV----------YSREGKTDSTGTYKILV   85 (159)
Q Consensus        25 ~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~----------~~~~~~TD~~G~F~i~l   85 (159)
                      .++.|+|+|+=.+|         .||+||.|.|==-|. +|...          ......||++|.|.+..
T Consensus       101 ~~l~l~G~V~D~~G---------~Pv~~A~VeiWqada-~G~Y~~~~~~~~~~~~rGr~~Td~~G~y~F~T  161 (254)
T 2boy_A          101 DTLIFRGEVVDQEG---------APLADVLLDMWQADA-AGEYSFINPTLPDYLFRGKIRTDENGRFTLRT  161 (254)
T ss_dssp             CEEEEEEEEECTTS---------CBCCSCEEEEECCCT-TSCCBTTBTTSCTTTTEEEEECCTTSEEEEEE
T ss_pred             CEEEEEEEEECCCC---------CCCCCCEEEEEcCCC-CCccCCcCCCCCCCCCeeEEEeCCCceEEEEE
Confidence            46999999984333         599999999943332 22221          14567899999999863

>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*

Probab=83.35  E-value=1.7  Score=34.10  Aligned_cols=53  Identities=9%  Similarity=0.140  Sum_probs=36.1

Q ss_pred             CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEE-EecCCC------Cc-----eEEE--EEEEEc-CCCceEEEEe
Q 031458           24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKV-ECKDRK------SM-----QVVY--SREGKT-DSTGTYKILV   85 (159)
Q Consensus        24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v-~C~~~~------~~-----~v~~--~~~~~T-D~~G~F~i~l   85 (159)
                      +.++.|+|+|.=.+|         .||+||.|-| +|....      ..     ...|  ...-.| |++|.|.+..
T Consensus        50 G~~l~v~G~V~D~~G---------~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~T~d~~G~y~F~T  117 (209)
T 2bum_A           50 GQRIRLEGQVFDGLG---------LPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFNT  117 (209)
T ss_dssp             SCEEEEEECEECTTS---------CBCSSCEEEEECCCTTSCCSSTTCCSCSCCCTTCCCEEEEECCTTTCCEEEEE
T ss_pred             CCEEEEEEEEECCCC---------CCCCCCEEEEEecCCCCcccCccCCcccccCCCccceeEEeeeCCCcEEEEEE
Confidence            356999999994433         5999999999 454321      00     1112  456677 9999999864

>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*

Probab=82.10  E-value=0.94  Score=38.03  Aligned_cols=44  Identities=23%  Similarity=0.161  Sum_probs=31.3

Q ss_pred             eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecC
Q 031458           27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE   87 (159)
Q Consensus        27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~   87 (159)
                      ..|.|.|.=.        ....||+||+|.|+  +.       ....+||++|.|.+.++.
T Consensus       301 ~~i~G~V~D~--------~~g~pi~~A~V~v~--~~-------~~~~~Td~~G~y~~~l~~  344 (380)
T 1h8l_A          301 RGIWGFVLDA--------TDGRGILNATISVA--DI-------NHPVTTYKDGDYWRLLVQ  344 (380)
T ss_dssp             CEEEEEEEET--------TTCSBCTTCEEEET--TE-------EEEEECCTTSEEEECCCS
T ss_pred             ccceEEEEeC--------CCCCccCceEEEEe--cC-------cceeEECCCEEEEEecCC
Confidence            4799999721        12369999999985  21       134689999999886653

>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens}

Probab=81.90  E-value=1  Score=38.57  Aligned_cols=42  Identities=21%  Similarity=0.303  Sum_probs=31.1

Q ss_pred             eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458           27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS   86 (159)
Q Consensus        27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~   86 (159)
                      ..|.|.|. |.        ...||+||+|.|+  +.       ....+||++|.|.+.++
T Consensus       321 ~~i~G~V~-D~--------~g~pi~gA~V~v~--~~-------~~~~~Td~~G~y~~~l~  362 (439)
T 2nsm_A          321 QGIKGMVL-DQ--------NYNNLANAVISVS--GI-------NHDVTSGDHGDYFRLLL  362 (439)
T ss_dssp             CSEEEEEE-CT--------TSCBCTTCEEEET--TE-------EEEEECCTTSEEEECCC
T ss_pred             cceEEEEE-cC--------CCCCccceEEEEE--cc-------cceeEECCCCeEEEccC
Confidence            46999997 21        2369999999995  21       13579999999988765

>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...

Probab=81.58  E-value=3.5  Score=33.10  Aligned_cols=53  Identities=19%  Similarity=0.133  Sum_probs=37.3

Q ss_pred             CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEE-EecCCCC-------------ceEEEEEEEEcCCCceEEEEe
Q 031458           24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKV-ECKDRKS-------------MQVVYSREGKTDSTGTYKILV   85 (159)
Q Consensus        24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v-~C~~~~~-------------~~v~~~~~~~TD~~G~F~i~l   85 (159)
                      +.++.|+|+|+=.+|         .||+||.|.| +|.....             ..........||++|.|.+..
T Consensus        75 G~~i~l~G~V~D~~G---------~Pv~~A~VEiWqada~G~Y~~~~d~~~~~~~~~f~~rGr~~TD~~G~y~F~T  141 (238)
T 3t63_M           75 GERIIVAGRVVDQYG---------KPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRT  141 (238)
T ss_dssp             SCEEEEEEEEEETTS---------CBCTTCEEEEEECCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEE
T ss_pred             CcEEEEEEEEECCCC---------CCCCCCEEEEEecCCCCCCCCccccccccCCCCcCceeEEEECCCceEEEEE
Confidence            356999999994433         5999999999 6653310             001234667999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1h8la1	79	Carboxypeptidase D C-terminal domain {Crested duck	96.07
d1vlfn1	79	Transhydroxylase beta subunit, BthL, C-terminal do	95.65
d1uwya1	107	Carboxypeptidase M C-terminal domain {Human (Homo	93.48
d3pccm_	236	Protocatechuate-3,4-dioxygenase, beta chain {Pseud	90.53
d2burb1	238	Protocatechuate-3,4-dioxygenase, beta chain {Acine	84.34

>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Carboxypeptidase regulatory domain
domain: Carboxypeptidase D C-terminal domain
species: Crested duck (Lophonetta specularioides) [TaxId: 8836]

Probab=96.07  E-value=0.0051  Score=39.08  Aligned_cols=42  Identities=24%  Similarity=0.198  Sum_probs=29.9

Q ss_pred             EEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecC
Q 031458           29 VEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE   87 (159)
Q Consensus        29 V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~   87 (159)
                      |.|+|.=        .....||+||.|.|.  +.       .....||++|.|.+.++.
T Consensus         2 I~G~V~d--------~~tg~pi~~a~V~v~--~~-------~~~~~Td~~G~f~~~l~~   43 (79)
T d1h8la1           2 IWGFVLD--------ATDGRGILNATISVA--DI-------NHPVTTYKDGDYWRLLVQ   43 (79)
T ss_dssp             EEEEEEE--------TTTCSBCTTCEEEET--TE-------EEEEECCTTSEEEECCCS
T ss_pred             cEEEEEE--------CCCCCCcCCeEEEEe--Cc-------cccEEecCCCCEEEEeec
Confidence            6788871        123579999999983  21       134579999999887764

>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Cna protein B-type domain
family: Cna protein B-type domain
domain: Transhydroxylase beta subunit, BthL, C-terminal domain
species: Pelobacter acidigallici [TaxId: 35816]

Probab=95.65  E-value=0.014  Score=37.65  Aligned_cols=43  Identities=21%  Similarity=0.349  Sum_probs=31.6

Q ss_pred             eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEE-ec
Q 031458           27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKIL-VS   86 (159)
Q Consensus        27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~-l~   86 (159)
                      ++|.|.|. |          ..||+||.|.|.  +. +..+   .+..||++|.|.++ ++
T Consensus         3 ~~~~gi~~-~----------G~~v~gA~V~L~--~~-~~~v---~~t~Td~~G~F~f~~l~   46 (79)
T d1vlfn1           3 YVTAGILV-Q----------GDCFEGAKVVLK--SG-GKEV---ASAETNFFGEFKFDALD   46 (79)
T ss_dssp             EEEEEEEE-T----------TEECTTCEEEEE--ET-TEEE---EEEECCTTSEEEEEEEC
T ss_pred             cEEeeEEE-C----------CccccccEEEEE--CC-CCeE---EeeEECCCCcEEEEecC
Confidence            67888775 1          359999999995  32 2222   46789999999997 54

>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Carboxypeptidase regulatory domain-like
family: Carboxypeptidase regulatory domain
domain: Carboxypeptidase M C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.025  Score=37.73  Aligned_cols=43  Identities=30%  Similarity=0.504  Sum_probs=29.5

Q ss_pred             EEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecC
Q 031458           29 VEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE   87 (159)
Q Consensus        29 V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~   87 (159)
                      |.|.|. |        ....||+||.|.|+  +.+..     ....||++|+|.+.++.
T Consensus         2 I~G~V~-D--------~~g~pi~~A~V~i~--~~~~~-----~~~~td~~G~f~~~~~~   44 (107)
T d1uwya1           2 VKGQVF-D--------QNGNPLPNVIVEVQ--DRKHI-----CPYRTNKYGEYYLLLLP   44 (107)
T ss_dssp             EEEEEE-C--------TTSCBCCSCEEEET--TCCCS-----SCCBCCTTCEEEECCCS
T ss_pred             cEEEEE-C--------CCCCCcCcEEEEEE--ccccc-----ceeecchhheeeeecCC
Confidence            788887 2        12359999999993  33211     23479999999887653

>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Protocatechuate-3,4-dioxygenase, beta chain
species: Pseudomonas putida [TaxId: 303]

Probab=90.53  E-value=0.2  Score=38.41  Aligned_cols=55  Identities=20%  Similarity=0.157  Sum_probs=39.5

Q ss_pred             CCCCCeEEEEEEEcccCCCCCCCCCccccCCCEEEE-EecCCCC-------------ceEEEEEEEEcCCCceEEEEe
Q 031458           22 PNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKV-ECKDRKS-------------MQVVYSREGKTDSTGTYKILV   85 (159)
Q Consensus        22 ~~~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v-~C~~~~~-------------~~v~~~~~~~TD~~G~F~i~l   85 (159)
                      +.+.++.|+|+|.=..|         .||+||.|.| +|.....             ..........||++|.|.+..
T Consensus        73 ~~Ge~i~v~GrV~D~~g---------~Pv~~a~VEIWQana~G~Y~~~~d~~~~~~d~~f~grGr~~Td~~G~y~F~T  141 (236)
T d3pccm_          73 PIGERIIVAGRVVDQYG---------KPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRT  141 (236)
T ss_dssp             CSSCEEEEEEEEEETTS---------CBCTTCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEE
T ss_pred             CCCCEEEEEEEEECCCC---------CCcCCcEEEEEecCCCceECCCccccccccCCccceEEEEEcCCCCeEEEEe
Confidence            33467999999994433         5999999999 7775410             011246777899999999864

>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Aromatic compound dioxygenase
family: Aromatic compound dioxygenase
domain: Protocatechuate-3,4-dioxygenase, beta chain
species: Acinetobacter calcoaceticus, adp1 [TaxId: 471]

Probab=84.34  E-value=1.1  Score=34.18  Aligned_cols=53  Identities=21%  Similarity=0.028  Sum_probs=37.6

Q ss_pred             CCCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceE---------------EEEEEEEcCCCceEEEEe
Q 031458           23 NPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQV---------------VYSREGKTDSTGTYKILV   85 (159)
Q Consensus        23 ~~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v---------------~~~~~~~TD~~G~F~i~l   85 (159)
                      .+.++.|.|+|+=..|         .||+||.|.|==.|. .|..               .......||++|.|.+..
T Consensus        72 ~Ge~i~v~G~V~D~~g---------~Pv~~A~VEiWQada-~G~Y~~~~d~~~~~~d~~f~grGr~~TD~~G~y~F~T  139 (238)
T d2burb1          72 IGERVIVHGYVRDQFG---------RPVKNALVEVWQANA-SGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRT  139 (238)
T ss_dssp             SSCEEEEEEEEEETTS---------CBCCSCEEEEECCCT-TSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEE
T ss_pred             CcCEEEEEEEEECCCC---------CCCCCcEEEEEecCC-CcccCCccccccCccCCCcceEEEEEeCCCCeEEEEe
Confidence            3457999999994433         599999999943332 1211               225677999999999973