Citrus Sinensis ID: 031461

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDTHEKIEACerkkhdgnllfrAGKYWRASKKYEKAAKIIEFHhsftddekhqanglrlscylNNAACKLKLEDYSETSSLCTKvleleplnVKALYRRSQAHLKTSELEKAEADIKRAltidpnnrVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG
Flexible Loop (DISEMBL)
mdthekieacerkkhdgnllfraGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEAdikraltidpnnrvvKLVYMELKDKQREYAKYQAEIFGTMLSKMG
Low Complexity Region (SEG)
MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG
Disordered region (IsUnstruct)
****************GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA***********ADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGT******
Disordered Region (DISOPRED)
*DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD*KHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME*****************TMLSKM*
Disordered Region (DISEMBL)
MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG
Disordered Region (DISPRO)
*DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVxxxxxxxxxxxxxxxxxxxxxIFGTMLSKMG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q38931	551	Peptidyl-prolyl cis-trans	yes	no	0.993	0.286	0.563	1e-45
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.993	0.273	0.537	4e-44
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.993	0.282	0.582	1e-43
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.817	0.283	0.392	4e-21
Q95L05	457	Peptidyl-prolyl cis-trans	N/A	no	0.993	0.345	0.329	2e-20
Q9XT11	457	Peptidyl-prolyl cis-trans	N/A	no	0.993	0.345	0.329	2e-20
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.993	0.345	0.322	2e-20
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.993	0.344	0.322	3e-20
Q13451	457	Peptidyl-prolyl cis-trans	no	no	0.993	0.345	0.322	6e-20
Q9QVC8	458	Peptidyl-prolyl cis-trans	no	no	0.993	0.344	0.316	1e-19

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  182 bits (461), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 120/158 (75%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           M+T EKIEA  +KK +GN  F+ GKY  ASK+YEKA K IE+  SF+++EK QA  L+++
Sbjct: 391 MNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAKALKVA 450

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
           C LN+AACKLKL+DY +   LCTKVLELE  NVKALYRR+QA+++ S+L+ AE D+K+AL
Sbjct: 451 CNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDVKKAL 510

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            IDPNNR VKL    LK+K +E+ K +A+ +G M +K+
Sbjct: 511 EIDPNNREVKLEQKRLKEKMKEFNKKEAKFYGNMFAKL 548

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  176 bits (447), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/158 (53%), Positives = 123/158 (77%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           M+T E+IEA  +KK +GN+LF+AGKY RASK+YE+  K IE+  +F ++EK ++  L+++
Sbjct: 401 MNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIA 460

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
           C LN+AACKLKL+DY E + L TKVLE++  NVKA+YRR+ A+L+T++L+ AE DIK+AL
Sbjct: 461 CNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKAL 520

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            IDP+N+ VK+ Y +LK+K +EY K  A+ +  MLSKM
Sbjct: 521 EIDPDNKEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKM 558

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  175 bits (444), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/158 (58%), Positives = 118/158 (74%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           ++  EKIEA   KK +GN LF++GKY RASK+YEKAAK IE+  SF++DEK Q+  L+++
Sbjct: 392 LNNSEKIEAAGTKKEEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQLKIT 451

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
           C LNNAACKLKL+DY +   LCTKVLEL+  NVKALYRR+QA+ + ++LE AE DIK+AL
Sbjct: 452 CNLNNAACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEVDIKKAL 511

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            IDP NR VKL Y  LK+K +E  K  A+ +  M SKM
Sbjct: 512 EIDPENRDVKLTYKTLKEKIKEINKKDAKFYSNMFSKM 549

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  100 bits (249), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 78/130 (60%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           M++ EK+E     K  G + F+ GKY +A  +Y+K    +E+  SF+++E  +A  LRL+
Sbjct: 261 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 320

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL+ +S     C K LEL+  N K L+RR +AHL  ++ E A AD ++ L
Sbjct: 321 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVL 380

Query: 121 TIDPNNRVVK 130
            + PNN+  K
Sbjct: 381 QLYPNNKAAK 390

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q95L05|FKBP5_CHLAE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Chlorocebus aethiops GN=FKBP5 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 81/158 (51%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           MDT EK+E     K  G + F+ GKY RA  +Y K    +E  +  ++ E   +    L+
Sbjct: 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMRAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L
Sbjct: 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            ++P N+  +L     + K +E+ +    I+  M  K 
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKF 416

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP. Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Chlorocebus aethiops (taxid: 9534)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XT11|FKBP5_AOTNA Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Aotus nancymaae GN=FKBP5 PE=2 SV=2

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 81/158 (51%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           MDT EK+E     K  G L F+ GKY +A  +Y K    +E  +  ++ E   +    L+
Sbjct: 259 MDTKEKLEQAAIVKEKGTLYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L
Sbjct: 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            ++P N+  +L     + K +E+ +    I+  M  K 
Sbjct: 379 EVNPQNKAARLQIFMCQKKAKEHNERDRRIYANMFKKF 416

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Aotus nancymaae (taxid: 37293)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 83/158 (52%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           MDT EK+E     K +G + F+ GKY +A  +Y K    +E  +  ++ E   +    L+
Sbjct: 259 MDTKEKLEQAAIVKEEGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L
Sbjct: 319 AFLNLAMCYLKLREYAKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            ++P N+  +L  +  + K +E+ +    I+  M  K 
Sbjct: 379 EVNPQNKAARLQIVVCQKKAKEHNERDRRIYANMFKKF 416

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 90/158 (56%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           M + EK+E     K  G + F+ GKY +A  +Y+K    +E+  SF+D++  +A  LRL+
Sbjct: 261 MSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAEKAQALRLA 320

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL+ +S     C K LEL+  N K L+RR +AHL  ++ + A AD ++ L
Sbjct: 321 SHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVL 380

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            + P+N+  K   +  + + R+  + + +++  M  ++
Sbjct: 381 QLYPSNKAAKAQLVVCQQRIRKQLEKEKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q13451|FKBP5_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Homo sapiens GN=FKBP5 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 81/158 (51%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           MDT EK+E     K  G + F+ GKY +A  +Y K    +E  +  ++ E   +    L+
Sbjct: 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L
Sbjct: 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            ++P N+  +L     + K +E+ +    I+  M  K 
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKF 416

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 87/158 (55%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           M++ EK+E     K  G + F+ GKY +A  +Y+K    +E+  SF+ +E  + + LRL+
Sbjct: 261 MNSEEKLEQSNIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQKVHALRLA 320

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL+ +S     C K LEL+  N K L+RR +AHL  ++ + A AD ++ L
Sbjct: 321 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVL 380

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            + P+N+  K      + + R     + +++  M  ++
Sbjct: 381 QLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
359481570	523	PREDICTED: LOW QUALITY PROTEIN: 70 kDa p	1.0	0.304	0.709	3e-61
255570494	523	peptidylprolyl isomerase, putative [Rici	1.0	0.304	0.723	3e-61
356503354	538	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.993	0.293	0.727	9e-59
356570407	533	PREDICTED: LOW QUALITY PROTEIN: 70 kDa p	0.981	0.292	0.614	3e-49
355329948	573	FK506-binding protein [Nicotiana tabacum	0.993	0.275	0.607	4e-48
115457870	585	Os04g0352400 [Oryza sativa Japonica Grou	0.981	0.266	0.602	9e-47
224147353	548	predicted protein [Populus trichocarpa]	0.798	0.231	0.623	1e-46
359497408	342	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.993	0.461	0.588	2e-46
224065421	575	predicted protein [Populus trichocarpa]	0.993	0.274	0.588	2e-46
359497288	571	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.993	0.276	0.588	2e-46

>gi|359481570|ref|XP_003632641.1| PREDICTED: LOW QUALITY PROTEIN: 70 kDa peptidyl-prolyl isomerase-like [Vitis vinifera]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/165 (70%), Positives = 138/165 (83%), Gaps = 6/165 (3%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEK------AAKIIEFHHSFTDDEKHQA 54
           M+ HEK+EACERKKHDGN+LF+AGK+W ASKKYEK      A K IEF HSFTD+EK QA
Sbjct: 359 MENHEKLEACERKKHDGNMLFKAGKFWHASKKYEKEIYLEXAEKYIEFDHSFTDEEKVQA 418

Query: 55  NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEA 114
           N LR+SC LNNAACKLKL +Y E S  CTKVLEL+P N+KALYRRSQ++L+ SELEKAEA
Sbjct: 419 NALRISCNLNNAACKLKLGEYLEASKQCTKVLELDPSNIKALYRRSQSYLRISELEKAEA 478

Query: 115 DIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG 159
           DI+RALTIDP+NR VKLVY EL+ KQ+EY ++Q +IF TMLS+MG
Sbjct: 479 DIRRALTIDPSNRDVKLVYKELQVKQKEYIRHQTQIFSTMLSRMG 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570494|ref|XP_002526205.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223534483|gb|EEF36184.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 115/159 (72%), Positives = 133/159 (83%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           MD  EK+EACE KK DGN+LF+AGK+WRASKKYEKA  I+E+ H FTDD+K  A GLRLS
Sbjct: 365 MDASEKLEACEIKKLDGNVLFKAGKFWRASKKYEKATNIVEYDHPFTDDQKCLAKGLRLS 424

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
           CYLNNAACKLKL +Y E S LCTKVLE +P NVKAL+RRS+A+LK +ELEKAEADI +AL
Sbjct: 425 CYLNNAACKLKLGEYCEASRLCTKVLEQDPFNVKALFRRSEAYLKITELEKAEADINKAL 484

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG 159
            IDPNNR VKL Y ELKDKQR YAK+QA++F TM S+MG
Sbjct: 485 IIDPNNRDVKLKYKELKDKQRVYAKHQAKLFSTMFSRMG 523

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503354|ref|XP_003520475.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 115/158 (72%), Positives = 133/158 (84%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           MDT EKIEACERKKHDGNLLF+   +  ASKKYEKA K IEF HSF++DEK +AN L LS
Sbjct: 380 MDTQEKIEACERKKHDGNLLFKVENFRHASKKYEKAVKYIEFDHSFSEDEKCRANTLHLS 439

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
           C LNNAACKLKL +Y E S LCTKVLE +PLN+KALYRR QA+LKTS+LEKAEADIKRAL
Sbjct: 440 CNLNNAACKLKLGEYIEASRLCTKVLEQDPLNIKALYRRCQAYLKTSDLEKAEADIKRAL 499

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            IDPNNR +KL Y ELK KQ+EY++++A+IF TMLS+M
Sbjct: 500 IIDPNNRDIKLEYKELKLKQKEYSRHEADIFSTMLSRM 537

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570407|ref|XP_003553380.1| PREDICTED: LOW QUALITY PROTEIN: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 107/174 (61%), Positives = 125/174 (71%), Gaps = 18/174 (10%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           MDT EKIE CERKKHDGNLLF+   + RASKKYEKA K IEF HSF++DEKH+ N LRLS
Sbjct: 361 MDTQEKIEVCERKKHDGNLLFKVENFRRASKKYEKAVKYIEFDHSFSEDEKHRDNTLRLS 420

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVL----------------ELEPLNVKALYRRSQAHL 104
           C LNNAA KLKL +Y E  +LCTK L                 ++P  +KALYRR QA+L
Sbjct: 421 CNLNNAAGKLKLGEYIE--ALCTKPLRVVYDLQHTLDEITYMSVKPFTIKALYRRCQAYL 478

Query: 105 KTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
           KTS+L KAE DIKRAL IDPNNR +KL   ELK KQ+EY +++A IF TMLS+M
Sbjct: 479 KTSDLVKAETDIKRALIIDPNNRDIKLECKELKCKQKEYNRHEANIFSTMLSRM 532

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329948|dbj|BAL14273.1| FK506-binding protein [Nicotiana tabacum]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 96/158 (60%), Positives = 123/158 (77%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           M+T EKIEA  +KK +GN LF+AGKY RASK+YEKAAK IE+  SF+++EK Q+  L++S
Sbjct: 391 MNTPEKIEAAGKKKEEGNALFKAGKYTRASKRYEKAAKFIEYDTSFSEEEKKQSKALKIS 450

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
           C LNNAACKLKL+DY +   LCTKVLELE  NVKALYRR+QA++  ++L+ AE DIK+AL
Sbjct: 451 CNLNNAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMNMADLDLAEFDIKKAL 510

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            IDPNNR VKL Y  LKDK +E+ K  A+ +G M +K+
Sbjct: 511 EIDPNNRDVKLEYKALKDKVKEFNKKDAKFYGNMFAKL 548

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115457870|ref|NP_001052535.1| Os04g0352400 [Oryza sativa Japonica Group] gi|66153725|gb|AAD29708.2|AF140495_1 FK506-binding protein [Oryza sativa Japonica Group] gi|38347494|emb|CAE05842.2| OSJNBa0091C07.4 [Oryza sativa Japonica Group] gi|113564106|dbj|BAF14449.1| Os04g0352400 [Oryza sativa Japonica Group] gi|125589994|gb|EAZ30344.1| hypothetical protein OsJ_14391 [Oryza sativa Japonica Group] gi|215704766|dbj|BAG94794.1| unnamed protein product [Oryza sativa Japonica Group] gi|218194645|gb|EEC77072.1| hypothetical protein OsI_15470 [Oryza sativa Indica Group]

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 94/156 (60%), Positives = 121/156 (77%)

Query: 2   DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSC 61
           D  EKIEA  +KK +GN+ F+ GKY +ASK+YEKAAK IE+  SFTDDEK Q+  L++SC
Sbjct: 403 DNAEKIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKALKVSC 462

Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
            LNNAACKLKL++Y E   LCTKVLELE  NVKALYRR+QA+++ ++LE AE D+K+AL 
Sbjct: 463 KLNNAACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLELAELDVKKALE 522

Query: 122 IDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK 157
           IDP+NR VK+VY  LK+K +EY K  A+ +G M +K
Sbjct: 523 IDPDNRDVKMVYKTLKEKIKEYNKRDAKFYGNMFAK 558

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224147353|ref|XP_002336458.1| predicted protein [Populus trichocarpa] gi|222835069|gb|EEE73518.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/162 (62%), Positives = 112/162 (69%), Gaps = 35/162 (21%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKA------------------------ 36
           MDTHEK+EA ERKK DGN+LF+AGK+WRASKKYEKA                        
Sbjct: 377 MDTHEKLEASERKKLDGNVLFKAGKFWRASKKYEKASPKAMKLRKIHHPFKILLSFSAFK 436

Query: 37  -----------AKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85
                      AK IEF HSFTD+E   A  LRLSCYLNNAACKLK  ++ E S LCTKV
Sbjct: 437 LQNFLNYKFQAAKYIEFDHSFTDEEMCLAKSLRLSCYLNNAACKLKSGEFLEASRLCTKV 496

Query: 86  LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127
           LEL+PLNVKAL+RRSQA+LKTSELEKAEADIK+AL IDPNNR
Sbjct: 497 LELDPLNVKALFRRSQAYLKTSELEKAEADIKKALAIDPNNR 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497408|ref|XP_002268161.2| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like, partial [Vitis vinifera] gi|296090691|emb|CBI41091.3| unnamed protein product [Vitis vinifera]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/158 (58%), Positives = 124/158 (78%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           M+T EKIEA  +KK +GN+LF+AGKY RASK+YEKAAK IE+  SF ++EK QA  L+++
Sbjct: 161 MNTEEKIEAAGKKKEEGNVLFKAGKYARASKRYEKAAKYIEYDSSFGEEEKKQAKTLKVT 220

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
           C LNNAACKLKL+DY E   LCTKVL+++  NVKALYRR+QA++  ++L+ AE DIK+AL
Sbjct: 221 CNLNNAACKLKLKDYKEAEKLCTKVLDIQSKNVKALYRRAQAYIHLADLDLAEFDIKKAL 280

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            IDP+NR VKL Y  LK+K +EY K +A+ +G M ++M
Sbjct: 281 EIDPDNRDVKLEYRTLKEKMKEYNKKEAKFYGNMFARM 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065421|ref|XP_002301809.1| predicted protein [Populus trichocarpa] gi|222843535|gb|EEE81082.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/158 (58%), Positives = 125/158 (79%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           M+T EKIEA  +KK +GN+LF+AGKY +ASK+YEKA K IE+  SF+++EK QA  L+++
Sbjct: 393 MNTDEKIEAAGKKKEEGNVLFKAGKYAKASKRYEKAVKYIEYDSSFSEEEKKQAKALKVA 452

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
           C LNNAACKLKL+DY +   LCTKVLELE  NVKALYRR+QA+++ ++L+ AE DIK+AL
Sbjct: 453 CNLNNAACKLKLKDYKQAEKLCTKVLELESRNVKALYRRAQAYIQLADLDLAEFDIKKAL 512

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            IDP+NR VKL +  LK+K +EY K +A+ +G M +KM
Sbjct: 513 EIDPDNRDVKLEHKTLKEKMKEYNKKEAKFYGNMFAKM 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497288|ref|XP_002263566.2| PREDICTED: 70 kDa peptidyl-prolyl isomerase [Vitis vinifera] gi|296085741|emb|CBI29552.3| unnamed protein product [Vitis vinifera]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/158 (58%), Positives = 124/158 (78%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           M+T EKIEA  +KK +GN+LF+AGKY RASK+YEKAAK IE+  SF ++EK QA  L+++
Sbjct: 390 MNTEEKIEAAGKKKEEGNVLFKAGKYARASKRYEKAAKYIEYDSSFGEEEKKQAKTLKVT 449

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
           C LNNAACKLKL+DY E   LCTKVL+++  NVKALYRR+QA++  ++L+ AE DIK+AL
Sbjct: 450 CNLNNAACKLKLKDYKEAEKLCTKVLDIQSKNVKALYRRAQAYIHLADLDLAEFDIKKAL 509

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            IDP+NR VKL Y  LK+K +EY K +A+ +G M ++M
Sbjct: 510 EIDPDNRDVKLEYRTLKEKMKEYNKKEAKFYGNMFARM 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.981	0.266	0.602	8.8e-47
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.993	0.272	0.575	4.4e-45
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.993	0.281	0.563	9.1e-45
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.993	0.273	0.537	2.2e-43
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.968	0.225	0.519	3.6e-39
TAIR|locus:2037650	164	TPR6 "AT1G58450" [Arabidopsis	0.987	0.957	0.481	9.5e-34
UNIPROTKB|A8J0I6	569	FKB62 "Peptidyl-prolyl cis-tra	0.981	0.274	0.365	7e-24
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.993	0.357	0.341	2.4e-23
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.993	0.340	0.341	3.2e-23
UNIPROTKB|Q02790	459	FKBP4 "Peptidyl-prolyl cis-tra	0.993	0.344	0.335	1.8e-22

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 94/156 (60%), Positives = 121/156 (77%)

Query:     2 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSC 61
             D  EKIEA  +KK +GN+ F+ GKY +ASK+YEKAAK IE+  SFTDDEK Q+  L++SC
Sbjct:   403 DNAEKIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKALKVSC 462

Query:    62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
              LNNAACKLKL++Y E   LCTKVLELE  NVKALYRR+QA+++ ++LE AE D+K+AL 
Sbjct:   463 KLNNAACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLELAELDVKKALE 522

Query:   122 IDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK 157
             IDP+NR VK+VY  LK+K +EY K  A+ +G M +K
Sbjct:   523 IDPDNRDVKMVYKTLKEKIKEYNKRDAKFYGNMFAK 558

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 91/158 (57%), Positives = 119/158 (75%)

Query:     1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
             ++  EKIE    KK +GN LF+ GKY RASK+YEKAAK IE+  SF++DEK Q+  L+++
Sbjct:   397 LNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQLKVT 456

Query:    61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
             C LNNAACKLKL+DY +   LCTKVLEL+  NVKALYRR+QA+++ ++LE AE DIK+AL
Sbjct:   457 CNLNNAACKLKLKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVDIKKAL 516

Query:   121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
              IDP+NR VKL Y  LK+K +EY K  A+ +  M +KM
Sbjct:   517 EIDPDNRDVKLTYKNLKEKVKEYNKKDAKFYSNMFAKM 554

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 89/158 (56%), Positives = 120/158 (75%)

Query:     1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
             M+T EKIEA  +KK +GN  F+ GKY  ASK+YEKA K IE+  SF+++EK QA  L+++
Sbjct:   391 MNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAKALKVA 450

Query:    61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
             C LN+AACKLKL+DY +   LCTKVLELE  NVKALYRR+QA+++ S+L+ AE D+K+AL
Sbjct:   451 CNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDVKKAL 510

Query:   121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
              IDPNNR VKL    LK+K +E+ K +A+ +G M +K+
Sbjct:   511 EIDPNNREVKLEQKRLKEKMKEFNKKEAKFYGNMFAKL 548

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 85/158 (53%), Positives = 123/158 (77%)

Query:     1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
             M+T E+IEA  +KK +GN+LF+AGKY RASK+YE+  K IE+  +F ++EK ++  L+++
Sbjct:   401 MNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIA 460

Query:    61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
             C LN+AACKLKL+DY E + L TKVLE++  NVKA+YRR+ A+L+T++L+ AE DIK+AL
Sbjct:   461 CNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKAL 520

Query:   121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
              IDP+N+ VK+ Y +LK+K +EY K  A+ +  MLSKM
Sbjct:   521 EIDPDNKEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKM 558

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 423 (154.0 bits), Expect = 3.6e-39, P = 3.6e-39
 Identities = 80/154 (51%), Positives = 112/154 (72%)

Query:     5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLN 64
             EKIEA  +KK +GN  F+  KY RASK+Y KA   I++  SF+++EK  +  L++SC LN
Sbjct:   451 EKIEAAAKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSKPLKVSCKLN 510

Query:    65 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124
             NAACKLKL+DY E   LCT+VLEL+ +NVKA YRR+QAH+   + + AE DIK+AL IDP
Sbjct:   511 NAACKLKLKDYKEAKELCTEVLELDSMNVKAFYRRAQAHMYLVDFDLAELDIKKALEIDP 570

Query:   125 NNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
             +NR VK+ Y  LK+K +E  + + +++G M+SK+
Sbjct:   571 DNRDVKMGYRRLKEKVKEQKRKETKLYGNMISKL 604

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2037650 TPR6 "AT1G58450" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 77/160 (48%), Positives = 109/160 (68%)

Query:     1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
             M+  EKIEA  RKK +GNLL++  KY RA+KKY KAA+ IE +  F   ++ Q   LR+S
Sbjct:     1 MNNGEKIEAANRKKEEGNLLYKTQKYERAAKKYNKAAECIE-NGKFEGGDEKQVKALRVS 59

Query:    61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
             C+LN AAC LKL+++ ET  LC++VL++E  NVKALYRR+Q++++  +L  AE DI RAL
Sbjct:    60 CFLNGAACSLKLKNFLETIVLCSEVLDIEFQNVKALYRRAQSYIEVGDLISAEMDINRAL 119

Query:   121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM--LSKM 158
               DP NR VK +Y  +K  + E  +  A+++  M  LSK+
Sbjct:   120 EADPENREVKSLYKAMKLSKAESDRRDAKLYANMFALSKV 159

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

UNIPROTKB|A8J0I6 FKB62 "Peptidyl-prolyl cis-trans isomerase, FKBP-type" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 281 (104.0 bits), Expect = 7.0e-24, P = 7.0e-24
 Identities = 57/156 (36%), Positives = 93/156 (59%)

Query:     1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
             M   EK  A +++K  GN  F++GK  RA   +++A   + +  SF D+ K     ++ S
Sbjct:   369 MSDIEKAHAAKQRKDKGNAFFKSGKLARAQSCWDRAVAAVSYDKSFPDEAKAIGKEVKRS 428

Query:    61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
             C+LN AA  LK   + +    CT VL+++P +VKALYRR+QAH+  ++  +AE D+KRAL
Sbjct:   429 CWLNLAALDLKRAHWKDAVKHCTSVLDIDPTSVKALYRRAQAHMGMADFFEAEQDVKRAL 488

Query:   121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 156
              ++P++  V  +   LK  QRE  K +A+++  M +
Sbjct:   489 ELEPDSADVLALQRRLKAAQREQNKKEAKLYSKMFA 524

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 2.4e-23, P = 2.4e-23
 Identities = 54/158 (34%), Positives = 90/158 (56%)

Query:     1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
             M+T EK+E     K  G   F+ GKY RA+ +Y+K    +E     +D+E  +A  LRL+
Sbjct:   254 MNTEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLA 313

Query:    61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
              +LN A C LKL++YS+    C K LEL+  N K L+RR +AHL  ++ E A  D ++ +
Sbjct:   314 AHLNLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVI 373

Query:   121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
              + P+N+  K+  +  + K RE  + + +++  M  ++
Sbjct:   374 QLYPSNKAAKVQLVTCQQKIREQHEKEKKMYANMFQRL 411

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 3.2e-23, P = 3.2e-23
 Identities = 54/158 (34%), Positives = 90/158 (56%)

Query:     1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
             M+T EK+E     K  G   F+ GKY RA+ +Y+K    +E     +D+E  +A  LRL+
Sbjct:   254 MNTEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLA 313

Query:    61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
              +LN A C LKL++YS+    C K LEL+  N K L+RR +AHL  ++ E A  D ++ +
Sbjct:   314 AHLNLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVI 373

Query:   121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
              + P+N+  K+  +  + K RE  + + +++  M  ++
Sbjct:   374 QLYPSNKAAKVQLVTCQQKIREQHEKEKKMYANMFQRL 411

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

UNIPROTKB|Q02790 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4" [Homo sapiens (taxid:9606)]

 Score = 265 (98.3 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 53/158 (33%), Positives = 88/158 (55%)

Query:     1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
             M++ EK+E     K  G + F+ GKY +A  +Y+K    +E+  SF+++E  +A  LRL+
Sbjct:   261 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 320

Query:    61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
              +LN A C LKL+ +S     C K LEL+  N K L+RR +AHL  ++ E A AD ++ L
Sbjct:   321 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVL 380

Query:   121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
              + PNN+  K      + + R     + +++  M  ++
Sbjct:   381 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 418

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0032767 "copper-dependent protein binding" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0048156 "tau protein binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA;IBA

GO:0005528 "FK506 binding" evidence=IBA;TAS

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005622 "intracellular" evidence=NAS

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0044295 "axonal growth cone" evidence=ISS

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=ISS

GO:0010977 "negative regulation of neuron projection development" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0006457 "protein folding" evidence=TAS

GO:0030674 "protein binding, bridging" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA;IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	4335556	peptidyl-prolyl isomerase, putative, expressed (585 aa)
		(Oryza sativa Japonica)
Predicted Functional Partners:
	4331440	Dicer, putative, expressed; Involved in the RNA silencing pathway. Cleaves double- stranded RNA [...] (1883 aa)							•		0.659
	4341062	expressed protein (214 aa)							•		0.494

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-10
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-05
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	7e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.001
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.002
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 52.8 bits (127), Expect = 7e-10
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           GNL ++ G Y  A + YEKA ++   +                  Y N AA   KL  Y 
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNAD---------------AYYNLAAAYYKLGKYE 51

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125
           E      K LEL+P N KA Y    A+ K  + E+A    ++AL +DPN
Sbjct: 52  EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 27/88 (30%), Positives = 38/88 (43%)

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
             LN      KL DY E      K LEL+P N  A Y  + A+ K  + E+A  D ++AL
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQA 148
            +DP+N            K  +Y +   
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALE 89

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE-LEKAEADIKRA 119
              N      KL DY E      K LEL+P N +A Y  + A+LK  +  E+A  D+++A
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Query: 120 LTIDP 124
           L +DP
Sbjct: 65  LELDP 69

Length = 69

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 73  EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124
           +D++    L T+ ++L+P N +    R+QA++K     +A AD  +A+ +DP
Sbjct: 16  DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67

Length = 356

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 83  TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM--ELKDKQ 140
            K+L L+P +  AL   + A+       KA   +KRAL + P+N   ++      L  K+
Sbjct: 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR 684

Query: 141 REYAK 145
            E AK
Sbjct: 685 TESAK 689

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 10/113 (8%)

Query: 11  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 70
           ERKK+   L  +  K +R +K + KA K+         D  +         Y N AAC  
Sbjct: 122 ERKKYAAKLKEKGNKAYR-NKDFNKAIKLYSKAIECKPDPVY---------YSNRAACHN 171

Query: 71  KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 123
            L D+ +     T  LEL+P   KAL RR+ A+    +   A  D+  +  ID
Sbjct: 172 ALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIID 224

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 33.5 bits (78), Expect = 0.002
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 93  VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
            KALY    A+LK  + ++A    ++AL ++PNN
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 18/57 (31%), Positives = 28/57 (49%)

Query: 70  LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           L+  DY E  +     L   PL  +AL    +A L+   L +A A ++ AL  DP++
Sbjct: 8   LRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.97
KOG0553	304	consensus TPR repeat-containing protein [General f	99.92
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.91
KOG4234	271	consensus TPR repeat-containing protein [General f	99.86
PRK15359	144	type III secretion system chaperone protein SscB;	99.8
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.79
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.79
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.78
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.76
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.74
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.72
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.72
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.71
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.69
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.67
PRK11189	296	lipoprotein NlpI; Provisional	99.64
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.64
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.62
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.61
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.6
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.6
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.58
PRK15359	144	type III secretion system chaperone protein SscB;	99.54
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.54
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.54
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.53
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.53
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.51
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.51
PRK15331	165	chaperone protein SicA; Provisional	99.5
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.49
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.49
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.49
PRK12370	553	invasion protein regulator; Provisional	99.49
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.48
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.48
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.48
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.48
KOG1126	638	consensus DNA-binding cell division cycle control	99.48
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.47
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.47
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.46
KOG1126	638	consensus DNA-binding cell division cycle control	99.45
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.44
PRK12370	553	invasion protein regulator; Provisional	99.44
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.44
PRK11189	296	lipoprotein NlpI; Provisional	99.44
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.43
PRK10803	263	tol-pal system protein YbgF; Provisional	99.43
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.42
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.42
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.42
KOG2076	895	consensus RNA polymerase III transcription factor	99.41
PF13512	142	TPR_18: Tetratricopeptide repeat	99.4
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.4
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.39
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.39
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.38
KOG1125	579	consensus TPR repeat-containing protein [General f	99.38
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.38
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.37
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.36
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.35
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.35
PF13371	73	TPR_9: Tetratricopeptide repeat	99.35
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.35
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.34
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.34
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	99.32
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.31
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.31
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.3
KOG0553	304	consensus TPR repeat-containing protein [General f	99.29
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.29
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.27
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.24
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.24
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.23
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.22
KOG4555	175	consensus TPR repeat-containing protein [Function	99.22
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.22
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.21
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.2
PLN02789	320	farnesyltranstransferase	99.2
PF12688	120	TPR_5: Tetratrico peptide repeat	99.2
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.18
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.16
PLN02789	320	farnesyltranstransferase	99.16
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.14
PRK14574	822	hmsH outer membrane protein; Provisional	99.13
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.13
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.12
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.12
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.12
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.12
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.11
KOG2003	840	consensus TPR repeat-containing protein [General f	99.11
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.1
PF13371	73	TPR_9: Tetratricopeptide repeat	99.07
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.07
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.07
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.07
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.06
KOG1129	478	consensus TPR repeat-containing protein [General f	99.06
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.05
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.05
KOG1125	579	consensus TPR repeat-containing protein [General f	99.03
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.03
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.03
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.01
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.98
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.96
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.96
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.96
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.95
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.94
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.92
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.9
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.9
KOG2076	895	consensus RNA polymerase III transcription factor	98.89
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.88
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.88
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.88
PRK14574	822	hmsH outer membrane protein; Provisional	98.88
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.88
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.88
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.88
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.87
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.86
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.85
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.85
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.84
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.82
KOG1129	478	consensus TPR repeat-containing protein [General f	98.82
PRK15331	165	chaperone protein SicA; Provisional	98.82
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.81
PRK10803	263	tol-pal system protein YbgF; Provisional	98.81
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.78
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.76
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.75
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.75
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.74
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.73
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.72
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.7
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.7
PF12688	120	TPR_5: Tetratrico peptide repeat	98.7
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.69
KOG2003	840	consensus TPR repeat-containing protein [General f	98.69
KOG1310	758	consensus WD40 repeat protein [General function pr	98.68
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.66
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.65
PF13428	44	TPR_14: Tetratricopeptide repeat	98.64
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.62
PF13431	34	TPR_17: Tetratricopeptide repeat	98.62
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.61
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.59
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.58
PF13428	44	TPR_14: Tetratricopeptide repeat	98.57
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.55
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.54
PRK11906	458	transcriptional regulator; Provisional	98.54
PRK11906	458	transcriptional regulator; Provisional	98.52
PF13512	142	TPR_18: Tetratricopeptide repeat	98.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.51
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.51
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.47
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.47
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.45
KOG4234	271	consensus TPR repeat-containing protein [General f	98.44
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.44
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.42
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.42
PRK10941	269	hypothetical protein; Provisional	98.42
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.35
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.33
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.33
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.26
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	98.24
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.23
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.23
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.22
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.2
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.12
KOG3364	149	consensus Membrane protein involved in organellar	98.12
KOG4555	175	consensus TPR repeat-containing protein [Function	98.11
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.1
KOG4814	872	consensus Uncharacterized conserved protein [Funct	98.09
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.05
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.03
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	98.03
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.02
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.01
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	98.01
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.0
KOG1586	288	consensus Protein required for fusion of vesicles	97.99
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.98
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.97
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.96
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.94
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.93
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.92
KOG1586	288	consensus Protein required for fusion of vesicles	97.9
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.9
PF13431	34	TPR_17: Tetratricopeptide repeat	97.9
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.89
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.89
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.88
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.87
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.85
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.84
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.81
KOG1585	308	consensus Protein required for fusion of vesicles	97.8
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.78
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.74
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.74
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.74
KOG2471	696	consensus TPR repeat-containing protein [General f	97.69
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.68
PLN03077	857	Protein ECB2; Provisional	97.67
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.67
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.66
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.65
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.65
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.64
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.63
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.62
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.61
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.6
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.59
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.59
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.57
PLN03218	1060	maturation of RBCL 1; Provisional	97.57
PRK04841	903	transcriptional regulator MalT; Provisional	97.57
PLN03218	1060	maturation of RBCL 1; Provisional	97.55
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.54
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.53
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	97.5
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.48
PLN03077	857	Protein ECB2; Provisional	97.48
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.47
KOG1585	308	consensus Protein required for fusion of vesicles	97.46
COG2912	269	Uncharacterized conserved protein [Function unknow	97.45
PRK04841	903	transcriptional regulator MalT; Provisional	97.4
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.39
PRK10941	269	hypothetical protein; Provisional	97.38
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.37
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.37
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.32
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.28
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.28
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.22
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	97.21
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.18
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.13
KOG2471	696	consensus TPR repeat-containing protein [General f	97.13
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.07
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.04
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.01
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.99
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.95
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.94
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.92
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.89
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.87
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.87
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.84
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.79
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.77
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.73
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.71
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	96.68
KOG3364	149	consensus Membrane protein involved in organellar	96.65
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.65
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.59
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.49
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.45
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.44
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.36
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.34
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	96.23
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.23
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.21
COG3947	361	Response regulator containing CheY-like receiver a	96.11
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.07
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.06
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.98
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.9
COG2912	269	Uncharacterized conserved protein [Function unknow	95.89
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.73
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	95.71
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	95.63
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.61
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.52
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.52
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.48
KOG2581	493	consensus 26S proteasome regulatory complex, subun	95.39
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.33
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.31
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.31
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.21
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.2
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	94.99
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.87
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.86
PHA02537	230	M terminase endonuclease subunit; Provisional	94.72
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.7
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.34
COG4455	273	ImpE Protein of avirulence locus involved in tempe	94.31
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	94.31
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	94.3
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.29
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	94.26
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.24
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.14
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	94.06
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.99
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.81
KOG2047	835	consensus mRNA splicing factor [RNA processing and	93.75
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.73
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	93.67
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.58
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	93.55
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.54
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.47
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	93.15
KOG2041	1189	consensus WD40 repeat protein [General function pr	93.14
PF04212	69	MIT: MIT (microtubule interacting and transport) d	93.03
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.81
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	92.59
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	92.57
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.4
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.28
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	92.02
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.02
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	91.95
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	91.93
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	91.79
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	91.76
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	91.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.41
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	91.39
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	91.38
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.36
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	91.25
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	91.21
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	91.14
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	90.94
KOG3783	546	consensus Uncharacterized conserved protein [Funct	90.92
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.91
KOG1310	758	consensus WD40 repeat protein [General function pr	90.82
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	90.56
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.09
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.93
COG3947	361	Response regulator containing CheY-like receiver a	89.68
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	89.67
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	89.62
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.51
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	89.43
cd02656	75	MIT MIT: domain contained within Microtubule Inter	89.37
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	89.08
COG5159	421	RPN6 26S proteasome regulatory complex component [	89.04
COG4941	415	Predicted RNA polymerase sigma factor containing a	89.02
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	88.96
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	88.92
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	88.82
KOG2422	665	consensus Uncharacterized conserved protein [Funct	88.75
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	88.22
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	88.16
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	87.9
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.77
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	87.47
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	87.21
COG5191	435	Uncharacterized conserved protein, contains HAT (H	87.03
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	87.01
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	86.99
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	86.46
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	86.41
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.26
PF15469	182	Sec5: Exocyst complex component Sec5	86.23
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	86.19
PF12854	34	PPR_1: PPR repeat	85.4
KOG1463	411	consensus 26S proteasome regulatory complex, subun	85.28
KOG2422	665	consensus Uncharacterized conserved protein [Funct	85.25
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	84.49
PF04212	69	MIT: MIT (microtubule interacting and transport) d	84.38
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	84.01
KOG2041	1189	consensus WD40 repeat protein [General function pr	83.92
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	83.86
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	83.67
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	82.88
KOG1258	577	consensus mRNA processing protein [RNA processing	82.36
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	82.28
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	81.71
KOG0529	421	consensus Protein geranylgeranyltransferase type I	81.2
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	80.99
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	80.32
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	80.29
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	80.03

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-28  Score=176.34  Aligned_cols=157  Identities=43%  Similarity=0.771  Sum_probs=152.2

Q ss_pred             ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461            2 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL   81 (159)
Q Consensus         2 s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~   81 (159)
                      ..++++..+...++.|+.+|+.|+|..|+..|.+|+...+.....++++......++..+++|+|.|+.+++.|.+|+..
T Consensus       200 ~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~  279 (397)
T KOG0543|consen  200 FAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES  279 (397)
T ss_pred             chHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence            45579999999999999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031461           82 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM  158 (159)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (159)
                      |+++|.++|.|.+++|++|.++..+|+|+.|+.+|++++.++|+|..+...+..|..+++++.+.+++.|++||..+
T Consensus       280 c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  280 CNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL  356 (397)
T ss_pred             HHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999875

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.92  E-value=6.2e-24  Score=146.89  Aligned_cols=127  Identities=29%  Similarity=0.370  Sum_probs=119.2

Q ss_pred             hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461            3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC   82 (159)
Q Consensus         3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   82 (159)
                      +++....++.++..|+.+.+.++|.+|+..|.+||.++|.++.+               |.|+|.+|.++|+++.|+++|
T Consensus        74 ~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy---------------ycNRAAAy~~Lg~~~~AVkDc  138 (304)
T KOG0553|consen   74 PEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY---------------YCNRAAAYSKLGEYEDAVKDC  138 (304)
T ss_pred             hHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH---------------HHHHHHHHHHhcchHHHHHHH
Confidence            44677899999999999999999999999999999999988654               999999999999999999999


Q ss_pred             HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461           83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  144 (159)
Q Consensus        83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  144 (159)
                      +.+|.+||.+.++|.++|.+|+.+|++.+|+..|++++.++|+|...+..+..+...+.+..
T Consensus       139 e~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  139 ESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999998887776654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3e-22  Score=135.24  Aligned_cols=156  Identities=29%  Similarity=0.413  Sum_probs=144.2

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc---CCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHH
Q 031461            1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH---HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSE   77 (159)
Q Consensus         1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   77 (159)
                      ||.+|+++.+..+.+.||.+|+.|+|.+|+..|..|+....+-   ...-+.+|.+++....+++.|.+.|++..|+|.+
T Consensus       169 lsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ye  248 (329)
T KOG0545|consen  169 LSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYE  248 (329)
T ss_pred             CCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHH
Confidence            7899999999999999999999999999999999999876541   2223478999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461           78 TSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-RVVKLVYMELKDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus        78 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (159)
                      +++.|..+++.+|++.+|++++|.++....+.++|..+|..++.++|.- +.+...+..+..++.++++.++-.|++||+
T Consensus       249 vleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~kmfs  328 (329)
T KOG0545|consen  249 VLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKMFS  328 (329)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999987 457788899999999999999999999996

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.86  E-value=5.3e-20  Score=121.16  Aligned_cols=140  Identities=32%  Similarity=0.399  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      .+..+..++..|+.+|..|+|.+|...|..||.+.|..+.          ..+..+|.|+|.|.++++.++.|+..|.++
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----------e~rsIly~Nraaa~iKl~k~e~aI~dcsKa  160 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----------EERSILYSNRAAALIKLRKWESAIEDCSKA  160 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence            3667899999999999999999999999999999886543          456778999999999999999999999999


Q ss_pred             hhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461           86 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                      |.++|.+.+++.+++.+|.....|++|+.+|.+++..+|....+...+.++-..+....+..+..+..-+
T Consensus       161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kL  230 (271)
T KOG4234|consen  161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKL  230 (271)
T ss_pred             HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998888887777665544433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.80  E-value=3.9e-18  Score=109.99  Aligned_cols=116  Identities=12%  Similarity=0.128  Sum_probs=107.1

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      .+...|..++..|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+.+|++++.++|+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS---------------WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            35668999999999999999999999997775               445999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      ++.+++++|.++...|++++|+..|.+++.+.|+++......+.+...+..
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888888766653

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=4.6e-18  Score=124.52  Aligned_cols=130  Identities=32%  Similarity=0.391  Sum_probs=110.6

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461            1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS   80 (159)
Q Consensus         1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   80 (159)
                      |+++++.+.+..++.+||.+|+.|.|++||++|.+||++.|+.|..               |.|++.||..+|+|++.++
T Consensus       106 ~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~Vie  170 (606)
T KOG0547|consen  106 MLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKVIE  170 (606)
T ss_pred             cChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHHHH
Confidence            5788999999999999999999999999999999999999887655               8999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHH
Q 031461           81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI-DPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      +|.+++.++|++.+++++++.++..+|++++|+.+..-.--+ .=.|.++.....++....+..+-
T Consensus       171 d~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka  236 (606)
T KOG0547|consen  171 DCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKA  236 (606)
T ss_pred             HHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998877533222 22455566666666655554433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=3.2e-18  Score=126.24  Aligned_cols=117  Identities=33%  Similarity=0.426  Sum_probs=110.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .++..+..|+.+|+.|+|..|+..|.++|..+|+++               .+|.|+|.||.+++.+..|+.+|+.+|++
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da---------------~lYsNRAac~~kL~~~~~aL~Da~~~ieL  421 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA---------------RLYSNRAACYLKLGEYPEALKDAKKCIEL  421 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            477788899999999999999999999999988774               55999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      +|+++++|++.|.++..+.+|++|...|+.++.++|++.++...+.+|...+
T Consensus       422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.78  E-value=5.9e-18  Score=123.95  Aligned_cols=118  Identities=21%  Similarity=0.318  Sum_probs=110.4

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|+.+|..|+|..|+.+|.+++.+.|.+               ..++.++|.++..+|++++|+.++++++.++|
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P   67 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---------------AELYADRAQANIKLGNFTEAVADANKAIELDP   67 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            347788999999999999999999999998875               34589999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      .++.+++++|.+++.+|+|++|+..|++++.++|+++.+..++..|...+...
T Consensus        68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999998888654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=9.5e-18  Score=123.77  Aligned_cols=113  Identities=23%  Similarity=0.264  Sum_probs=107.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +....+.||.+|..|+|+.|+.+|..+|.++|.+               ..+|.|++.+|.++|+|++|+.+..+.++++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n---------------hvlySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN---------------HVLYSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCc---------------cchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4567899999999999999999999999998875               3459999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      |+|+++|.+.|-++..+|+|++|+..|.+.|..+|+|+.....+..+.
T Consensus        67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999999999999999999888

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.74  E-value=3.3e-17  Score=116.09  Aligned_cols=118  Identities=25%  Similarity=0.382  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      -+.....+++.||.||++|.|++||++|.+++...|.++..               +.|+|.+|++++.|..|..+|+.|
T Consensus        93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~---------------~~NRA~AYlk~K~FA~AE~DC~~A  157 (536)
T KOG4648|consen   93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY---------------HINRALAYLKQKSFAQAEEDCEAA  157 (536)
T ss_pred             HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc---------------hhhHHHHHHHHHHHHHHHHhHHHH
Confidence            34556668999999999999999999999999998877654               889999999999999999999999


Q ss_pred             hhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           86 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      +.++-.+.++|-++|.+-..+|...+|.++++.++.++|++.+....++.+..
T Consensus       158 iaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  158 IALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999888877777654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.72  E-value=4.1e-16  Score=100.00  Aligned_cols=117  Identities=8%  Similarity=0.061  Sum_probs=102.2

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      ..+.+...|..++..|++++|...|+-++.++|.+..               .|+++|.|+..+|+|++|+..|.+++.+
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~---------------y~~gLG~~~Q~~g~~~~AI~aY~~A~~L   98 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD---------------YWFRLGECCQAQKHWGEAIYAYGRAAQI   98 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            4577888999999999999999999999999887744               4999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      +|+++.++++.|.|+...|+.+.|.+.|+.++..-..++.-.....+.+..+
T Consensus        99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L  150 (157)
T PRK15363         99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML  150 (157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988755554444444444333

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.2e-16  Score=115.08  Aligned_cols=127  Identities=25%  Similarity=0.363  Sum_probs=115.2

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      .+..+..+..|+..|+.|+|..|-++|..+|.++|.+...           ...+|.|+|.+...+|+..+|+.+|+.++
T Consensus       246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~-----------naklY~nra~v~~rLgrl~eaisdc~~Al  314 (486)
T KOG0550|consen  246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT-----------NAKLYGNRALVNIRLGRLREAISDCNEAL  314 (486)
T ss_pred             HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch-----------hHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence            4567788999999999999999999999999999886554           47889999999999999999999999999


Q ss_pred             hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      .++|..++++.++|.|+..+++|++|+++|++|+++..+ ..++..+.+.+..+++-+.
T Consensus       315 ~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR  372 (486)
T KOG0550|consen  315 KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR  372 (486)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999887 7888888888777765543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.71  E-value=7e-16  Score=98.33  Aligned_cols=116  Identities=20%  Similarity=0.216  Sum_probs=105.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +......|..++..|++.+|+..|.+++...|.+               ..++.++|.++..+|++++|..++++++.++
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---------------SRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4667889999999999999999999999987765               3458999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      |+++..++.+|.++...|++++|+..|++++.++|++.........+...+
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988777776665443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.69  E-value=4.3e-15  Score=116.10  Aligned_cols=110  Identities=29%  Similarity=0.335  Sum_probs=101.2

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461            1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS   80 (159)
Q Consensus         1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   80 (159)
                      ||++++...+..++..|+.++..|+|+.|+..|.+++.+.|. +               ..|.++|.|+..+|+|++|+.
T Consensus       118 ~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~---------------~~~~n~a~~~~~l~~~~~Ai~  181 (615)
T TIGR00990       118 LSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P---------------VYYSNRAACHNALGDWEKVVE  181 (615)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h---------------HHHHHHHHHHHHhCCHHHHHH
Confidence            577888888999999999999999999999999999998764 1               348999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      +|++++.++|++.++++++|.+|..+|++++|+..|..+...++.+
T Consensus       182 ~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~  227 (615)
T TIGR00990       182 DTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR  227 (615)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            9999999999999999999999999999999999998887776654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=4.8e-15  Score=104.32  Aligned_cols=108  Identities=27%  Similarity=0.385  Sum_probs=98.3

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      +.|+.+++.||.+|+.++|..|+.+|.++|...-.+++.           ...+|.|+|.|...+|+|..|+.+|..++.
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl-----------navLY~NRAAa~~~l~NyRs~l~Dcs~al~  147 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL-----------NAVLYTNRAAAQLYLGNYRSALNDCSAALK  147 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH-----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            379999999999999999999999999999986666654           588899999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      ++|++.+++++-+.|++.+..+++|+.+++..+.++-..
T Consensus       148 ~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  148 LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            999999999999999999999999999988877665433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.64  E-value=9.4e-15  Score=104.80  Aligned_cols=105  Identities=19%  Similarity=0.146  Sum_probs=98.7

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+..+|..+...|++++|+..|.+++.+.|.+               ..++.++|.++..+|++++|+..+++++++
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l  127 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDM---------------ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL  127 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            46678999999999999999999999999998765               345999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  128 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  128 (159)
                      +|++..+++++|.+++..|++++|+..|++++.++|+++.
T Consensus       128 ~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        128 DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999999999974

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.64  E-value=2.6e-15  Score=113.28  Aligned_cols=131  Identities=18%  Similarity=0.091  Sum_probs=105.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      .+.+..+|+++...+.|+.|+.+|.+|+.+.|..               ..++.|+|.+|...|..+-|+..|+++|.+.
T Consensus       252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~---------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~  316 (966)
T KOG4626|consen  252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH---------------AVAHGNLACIYYEQGLLDLAIDTYKRALELQ  316 (966)
T ss_pred             hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc---------------hhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence            4667888888888888888888888888887765               3447888888888888888888888888888


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (159)
                      |..+.++.++|.++-..|+..+|..+|.+++.+.|+++.+...++.++..+.+..+..+ .|.+.|.
T Consensus       317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~-ly~~al~  382 (966)
T KOG4626|consen  317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR-LYLKALE  382 (966)
T ss_pred             CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH-HHHHHHh
Confidence            88888888888888888888888888888888888888888888888888777765543 5655543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.62  E-value=3e-14  Score=111.44  Aligned_cols=137  Identities=15%  Similarity=0.135  Sum_probs=84.4

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC--------------h-----HHHHHHHHHHHHHHhhHHHHH
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT--------------D-----DEKHQANGLRLSCYLNNAACK   69 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------------~-----~~~~~~~~~~~~~~~~~a~~~   69 (159)
                      .+..+...|..++..|++++|+..|.+++.+.|..+..-              .     .......+-...++.++|.++
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  409 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH  409 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            455667777788888888888888888887765432100              0     000001111234566666666


Q ss_pred             hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      ..+|++++|+.+|++++.++|++..+++.+|.++..+|++++|+..|++++...|+++.++..++.+...+++..+
T Consensus       410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~  485 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE  485 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666655555443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.61  E-value=5.1e-14  Score=87.46  Aligned_cols=112  Identities=17%  Similarity=0.159  Sum_probs=98.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      .+.+...|..++..|++++|+..|.+++...|.++..            ..+++.+|.++...|+++.|+..++.++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~   69 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA------------PNAHYWLGEAYYAQGKYADAAKAFLAVVKKY   69 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHC
Confidence            3567889999999999999999999999987765432            3458899999999999999999999999998


Q ss_pred             Ccc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461           90 PLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  133 (159)
Q Consensus        90 ~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  133 (159)
                      |++   +.+++.+|.++...|++++|...+.+++...|+++.+....
T Consensus        70 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        70 PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            875   67899999999999999999999999999999998765543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.60  E-value=1.9e-14  Score=108.70  Aligned_cols=115  Identities=13%  Similarity=0.103  Sum_probs=84.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+..+|.++.++|++++|+.+|+.+|++.|.               ...++.|+|.+|-.+|+...|++++.+||.++
T Consensus       388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~---------------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n  452 (966)
T KOG4626|consen  388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT---------------FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN  452 (966)
T ss_pred             hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch---------------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence            334455555555556666666666665555433               35668888888888888888888888888888


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      |..++++-++|.+|...|+..+|++.|+.++.+.|+.+.+.-.+.-+..-
T Consensus       453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~  502 (966)
T KOG4626|consen  453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI  502 (966)
T ss_pred             cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence            88888888888888888888888888888888888887776666655443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.60  E-value=4.2e-14  Score=95.79  Aligned_cols=111  Identities=15%  Similarity=0.129  Sum_probs=95.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHH-hhhhC--HHHHHHHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK-LKLED--YSETSSLCTKVL   86 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al   86 (159)
                      ++.+...|..+...|+++.|+..|.+++.+.|+++               .++.++|.++ ...|+  +++|...+++++
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~---------------~~~~~lA~aL~~~~g~~~~~~A~~~l~~al  137 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA---------------ELYAALATVLYYQAGQHMTPQTREMIDKAL  137 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            55678889999999999999999999999988764               4488999874 67777  599999999999


Q ss_pred             hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461           87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  135 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  135 (159)
                      +.+|+++.+++.+|.++...|++++|+..|++++.+.|.+.+-...+..
T Consensus       138 ~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~  186 (198)
T PRK10370        138 ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES  186 (198)
T ss_pred             HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence            9999999999999999999999999999999999999877544433333

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.58  E-value=1.7e-13  Score=90.92  Aligned_cols=117  Identities=24%  Similarity=0.204  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHH
Q 031461            5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK   84 (159)
Q Consensus         5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   84 (159)
                      .+...+..+...|..+...|++++|+.+|.+++...+..+.            ...++.++|.++..+|++++|+.++.+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~   97 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQ   97 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34556778899999999999999999999999998654321            135689999999999999999999999


Q ss_pred             HhhcCCccHHHHHHHHHHHHhhCC--------------HHHHHHHHHHHHhcCCCcH-HHHHHH
Q 031461           85 VLELEPLNVKALYRRSQAHLKTSE--------------LEKAEADIKRALTIDPNNR-VVKLVY  133 (159)
Q Consensus        85 al~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~-~~~~~~  133 (159)
                      ++...|.++.++..+|.++...|+              +++|...+++++.++|++. ++..++
T Consensus        98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  161 (172)
T PRK02603         98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWL  161 (172)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Confidence            999999999999999999999887              6788888899999999873 343333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.54  E-value=2.3e-13  Score=87.74  Aligned_cols=104  Identities=13%  Similarity=0.001  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHH
Q 031461           31 KKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE  110 (159)
Q Consensus        31 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  110 (159)
                      ..|.+++.+.|..                  +.++|.++...|++++|..+|++++.++|.+..+++.+|.++...|+++
T Consensus        14 ~~~~~al~~~p~~------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~   75 (144)
T PRK15359         14 DILKQLLSVDPET------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT   75 (144)
T ss_pred             HHHHHHHHcCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence            4577788776542                  5678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461          111 KAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGT  153 (159)
Q Consensus       111 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (159)
                      +|+..|.+++.++|+++.++..++.+...+++..+... .|..
T Consensus        76 ~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~-~~~~  117 (144)
T PRK15359         76 TAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE-AFQT  117 (144)
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHH
Confidence            99999999999999999999999999998888766533 4443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.54  E-value=4.2e-14  Score=79.87  Aligned_cols=66  Identities=30%  Similarity=0.475  Sum_probs=63.3

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCC
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDP  124 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p  124 (159)
                      ..++.++|.+++..|+|++|+.+|++++.++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3458999999999999999999999999999999999999999999999 79999999999999998

...

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=3.4e-13  Score=98.82  Aligned_cols=120  Identities=15%  Similarity=0.081  Sum_probs=67.9

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      .+.-.||-|--.++++.|+.+|++|++++|..               ..+|..+|+=|+.+++-..|+..+++|+.++|.
T Consensus       332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~---------------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~  396 (559)
T KOG1155|consen  332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKY---------------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR  396 (559)
T ss_pred             ceeeehhHHHHHHhHHHHHHHHHHHHhcCcch---------------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence            34456888888899999999999999997764               233444444444444444444444444444444


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +-++||.+|++|.-++-..=|+-+|++|+.+-|+|+.++..++.|..++.+..+.
T Consensus       397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eA  451 (559)
T KOG1155|consen  397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEA  451 (559)
T ss_pred             hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence            4444444444444444444444444444444444444444444444444444333

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=6.7e-14  Score=94.68  Aligned_cols=115  Identities=30%  Similarity=0.392  Sum_probs=100.9

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..++.+.+.|+.+|..++|..||.+|.++|.+.|..+.+               |.|++.||+++++|+.+..+|.++++
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y---------------~tnralchlk~~~~~~v~~dcrralq   72 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY---------------YTNRALCHLKLKHWEPVEEDCRRALQ   72 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh---------------hhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence            457889999999999999999999999999998876544               89999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---C--CcHHHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID---P--NNRVVKLVYMELK  137 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p--~~~~~~~~~~~~~  137 (159)
                      ++|+..++++.+|.+......|++|+..++++.++.   |  .-..+...+..++
T Consensus        73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak  127 (284)
T KOG4642|consen   73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK  127 (284)
T ss_pred             cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            999999999999999999999999999999996652   2  1234555555554

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.53  E-value=4.7e-14  Score=103.62  Aligned_cols=122  Identities=24%  Similarity=0.282  Sum_probs=113.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .++.+...|+.++..+.|+.|+..|.++|++.|+...+               +.+++..+++.++|..|+.++.++|++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~---------------~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY---------------FANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee---------------echhhhhheeechhhhHHHHHHhhhhc
Confidence            35678889999999999999999999999999987655               889999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      +|...++|+++|.+...++++.+|+..|+....+.|+++.+...+..|.....++..
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f  124 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKF  124 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999887776543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=3.7e-13  Score=100.44  Aligned_cols=120  Identities=19%  Similarity=0.163  Sum_probs=100.8

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      .+.+.|.++|..+.|.+|+.+|..++...+......        ..+.+++.|+|.++.+++.+++|+.+++++|.+.|.
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~--------~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK--------IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc--------cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            356778888888888888888888885443221110        135778999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      ++.++..+|.+|..+|+++.|+..|.+++.+.|+|..+...+..+...
T Consensus       488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998888888766544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.6e-12  Score=95.30  Aligned_cols=125  Identities=14%  Similarity=0.123  Sum_probs=112.9

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK   94 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~   94 (159)
                      -.|-.+...++...||..|+.|++++|.+               ..+|+.+|++|..++.+.-|+-+|++|+.+.|.++.
T Consensus       369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~D---------------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR  433 (559)
T KOG1155|consen  369 LMGHEYVEMKNTHAAIESYRRAVDINPRD---------------YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR  433 (559)
T ss_pred             HhhHHHHHhcccHHHHHHHHHHHhcCchh---------------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH
Confidence            34777889999999999999999998876               455999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461           95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus        95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                      .|..+|+||.++++.++|+++|.+++.....+..+...+++++++++..++.. .-|.+-.
T Consensus       434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa-~~yek~v  493 (559)
T KOG1155|consen  434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA-QYYEKYV  493 (559)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence            99999999999999999999999999999999999999999999998876653 3454443

>PRK15331 chaperone protein SicA; Provisional

Probab=99.50  E-value=9.9e-13  Score=84.91  Aligned_cols=117  Identities=9%  Similarity=0.082  Sum_probs=101.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      ..+.+...|-.+|.+|++++|...|.-..-+++.++.+               +..+|.|+..+++|++|+..|..+..+
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y---------------~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l  100 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY---------------TMGLAAVCQLKKQFQKACDLYAVAFTL  100 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            35667888999999999999999999999887777544               899999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      +++++...+..|+||..+|+...|..+|..++. .|.+..+...-......+.
T Consensus       101 ~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~  152 (165)
T PRK15331        101 LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK  152 (165)
T ss_pred             ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998 5666665554444444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.49  E-value=3.4e-12  Score=84.41  Aligned_cols=108  Identities=19%  Similarity=0.147  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ...+..+...|..+...|++++|+..|.+++.+.+....            ...++.++|.++...|++++|+.++++++
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------------RSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            346778899999999999999999999999998654221            13468999999999999999999999999


Q ss_pred             hcCCccHHHHHHHHHHHH-------hhCCHH-------HHHHHHHHHHhcCCCc
Q 031461           87 ELEPLNVKALYRRSQAHL-------KTSELE-------KAEADIKRALTIDPNN  126 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~-------~~~~~~-------~A~~~~~~al~~~p~~  126 (159)
                      .++|.+..++..+|.++.       ..|+++       +|+..|++++..+|.+
T Consensus       100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            999999999999999999       777766       5666666777888865

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.49  E-value=2e-13  Score=80.11  Aligned_cols=83  Identities=29%  Similarity=0.380  Sum_probs=72.6

Q ss_pred             cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461           23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  102 (159)
Q Consensus        23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  102 (159)
                      .|+|+.|+.+|.+++...|.++.             ...++.+|.|++.+|+|++|+..+++ +..+|.++...+.+|.|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~-------------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~   67 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPN-------------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC   67 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHH-------------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChh-------------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence            68999999999999999885321             34577899999999999999999999 88899999999999999


Q ss_pred             HHhhCCHHHHHHHHHHH
Q 031461          103 HLKTSELEKAEADIKRA  119 (159)
Q Consensus       103 ~~~~~~~~~A~~~~~~a  119 (159)
                      +..+|++++|+..|+++
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999875

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.49  E-value=2.5e-13  Score=96.69  Aligned_cols=133  Identities=16%  Similarity=0.148  Sum_probs=100.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ...+...|..+.+.|++++|+..|.++++..|.++               .+...++.++...|+++++...+.......
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~---------------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~  210 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP---------------DARNALAWLLIDMGDYDEAREALKRLLKAA  210 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H---------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            45577889999999999999999999999988764               347788999999999999999999988888


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM  158 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (159)
                      |+++..+..+|.++..+|++++|+.+|++++...|+|+.+...++.+....++.++... .+.+++..+
T Consensus       211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~-~~~~~~~~l  278 (280)
T PF13429_consen  211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR-LRRQALRLL  278 (280)
T ss_dssp             HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred             cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            99999999999999999999999999999999999999999999999999888876643 555555443

>PRK12370 invasion protein regulator; Provisional

Probab=99.49  E-value=1.4e-12  Score=100.91  Aligned_cols=119  Identities=9%  Similarity=-0.012  Sum_probs=74.4

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      .+...|..+...|++++|+..|.+++.+.|+++               .+++.+|.++...|++++|+..++++++++|.
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~  404 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISA---------------DIKYYYGWNLFMAGQLEEALQTINECLKLDPT  404 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            344556666666667777777777666655542               33666666666677777777777777777766


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTID-PNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      ++.+++.++.+++..|++++|+..+++++... |+++.++..++.+...+++.++
T Consensus       405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~e  459 (553)
T PRK12370        405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHEL  459 (553)
T ss_pred             ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHH
Confidence            66655555555666666666766666666553 5556666666666555544433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.48  E-value=2e-12  Score=104.90  Aligned_cols=115  Identities=5%  Similarity=-0.008  Sum_probs=82.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|.++.+.|++++|+..|.+++.+.|.++               .++.++|.++...|++++|+..+++++.++|
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---------------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNS---------------NYQAALGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            3455666777777777777777777777766543               3477777777777777777777777777777


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      +++.+++++|.++...|++++|+..|++++.++|++..+....+.+....
T Consensus       675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~  724 (987)
T PRK09782        675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR  724 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence            77777777777777777777777777777777777777666666555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.48  E-value=2.4e-12  Score=101.13  Aligned_cols=130  Identities=6%  Similarity=-0.052  Sum_probs=119.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ++.++.+|.+..+.|.+++|...+..++.+.|.+               ..+..+++.+..+++++++|+..+++++..+
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---------------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~  150 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---------------SEAFILMLRGVKRQQGIEAGRAEIELYFSGG  150 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence            6778889999999999999999999999998775               4568999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                      |+++.+++.+|.++..+|++++|+..|++++..+|+++.++..++.+.+..++..+... .|.+.+
T Consensus       151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~-~~~~a~  215 (694)
T PRK15179        151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD-VLQAGL  215 (694)
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence            99999999999999999999999999999999999999999999999998888866644 666654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.48  E-value=1.4e-12  Score=88.35  Aligned_cols=117  Identities=13%  Similarity=0.097  Sum_probs=102.3

Q ss_pred             cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461           23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  102 (159)
Q Consensus        23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  102 (159)
                      .++.++++..+.+++...|.+               ...|..+|.++..+|++++|+..++++++++|+++..+..+|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~---------------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a  116 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV  116 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            466788888888888887776               44599999999999999999999999999999999999999998


Q ss_pred             H-HhhCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461          103 H-LKTSE--LEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus       103 ~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                      + ...|+  +++|...+++++..+|+++.++..++.+....++.++... .+.++.
T Consensus       117 L~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL  171 (198)
T PRK10370        117 LYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKVL  171 (198)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence            5 67787  5999999999999999999999999999988888876644 555554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.48  E-value=2.7e-13  Score=75.66  Aligned_cols=64  Identities=27%  Similarity=0.348  Sum_probs=60.2

Q ss_pred             hHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461           64 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        64 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      .+|..++..|+|++|+..+++++..+|.++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5788999999999999999999999999999999999999999999999999999999999985

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=2.8e-13  Score=102.54  Aligned_cols=137  Identities=18%  Similarity=0.134  Sum_probs=110.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-CCC--------hHHH----------HHHHHHHHHHHhhHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH-SFT--------DDEK----------HQANGLRLSCYLNNAACKL   70 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~--------~~~~----------~~~~~~~~~~~~~~a~~~~   70 (159)
                      .+.+...||.+--+++++.||++|.+|+.++|... .++        .++.          ...++..-.+|+.+|.+|.
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            45678889999999999999999999999988421 110        0110          0123444557889999999


Q ss_pred             hhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        71 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      ++++++.|+-+|++|+.++|.+.......|.++.++|+.++|+..|++|+.++|.|+-.....+.+...+.+..+.
T Consensus       501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ea  576 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEA  576 (638)
T ss_pred             ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHH
Confidence            9999999999999999999999988999999999999999999999999999999988888888888887777654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.47  E-value=7.7e-12  Score=86.84  Aligned_cols=114  Identities=18%  Similarity=0.205  Sum_probs=100.2

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .++.+...|..++..|+|+.|+..|.+++...|.++..            ..+++.+|.++...|++++|+..++++++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------------~~a~~~la~~~~~~~~~~~A~~~~~~~l~~   99 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA------------EQAQLDLAYAYYKSGDYAEAIAAADRFIRL   99 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999998765432            346899999999999999999999999999


Q ss_pred             CCccHH---HHHHHHHHHHhh--------CCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           89 EPLNVK---ALYRRSQAHLKT--------SELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        89 ~~~~~~---~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      .|+++.   +++.+|.++...        |++++|+..|++++..+|++..+...+.
T Consensus       100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302       100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            998876   799999999887        8999999999999999999976654443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.47  E-value=9.6e-13  Score=77.44  Aligned_cols=99  Identities=36%  Similarity=0.443  Sum_probs=88.9

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      .+...|..++..|++++|+..+..++...|.++               .++..+|.++...+++++|..+++.++...|.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPD   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            356788999999999999999999998866542               44889999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPN  125 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  125 (159)
                      +..++..+|.++...|++++|...+.+++...|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999988774

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.46  E-value=1.1e-12  Score=93.35  Aligned_cols=130  Identities=17%  Similarity=0.217  Sum_probs=115.1

Q ss_pred             hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461            3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC   82 (159)
Q Consensus         3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   82 (159)
                      +-.++..+....+-+......++|.+++..++++++..|..+.+.           ...+..++.|+..-+++.+|++.|
T Consensus       262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir-----------~~~~r~~c~C~~~d~~~~eAiqqC  330 (504)
T KOG0624|consen  262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR-----------YNGFRVLCTCYREDEQFGEAIQQC  330 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee-----------eeeeheeeecccccCCHHHHHHHH
Confidence            345667788888888999999999999999999999887755542           445778899999999999999999


Q ss_pred             HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      .+++.++|++..+++.++.+|..-..|++|+..|+.|..++|+|..+...+...++..++.
T Consensus       331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs  391 (504)
T KOG0624|consen  331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQS  391 (504)
T ss_pred             HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999998887665443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.46  E-value=7.5e-12  Score=85.59  Aligned_cols=135  Identities=19%  Similarity=0.138  Sum_probs=69.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh------------HH-------HHHHHHHHHHHHhhHHHHH
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD------------DE-------KHQANGLRLSCYLNNAACK   69 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~~-------~~~~~~~~~~~~~~~a~~~   69 (159)
                      .+..+...|..++..|++++|+..+.+++...|.+...-.            +.       .....+-...++.++|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            3555666777777777777777777777766544311100            00       0000000112344555555


Q ss_pred             hhhhCHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           70 LKLEDYSETSSLCTKVLELE--PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        70 ~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      ...|++++|...+++++...  |.....++.+|.++...|++++|...+.+++...|+++.+...++.+....++.
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence            55555555555555555432  233445555555555555666666666666555555555555555555444444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=9.3e-13  Score=99.80  Aligned_cols=122  Identities=14%  Similarity=0.127  Sum_probs=113.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      -+.++..|.+|.++++++.|.-+|.+|+.++|.+.               .+..-+|..+..+|+.++|+..+++|+.++
T Consensus       489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---------------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld  553 (638)
T KOG1126|consen  489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---------------VILCHIGRIQHQLKRKDKALQLYEKAIHLD  553 (638)
T ss_pred             hHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---------------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence            35677889999999999999999999999988764               447889999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      |.++-+-+.+|.+++.++++++|+..+++.-.+.|++..+...++++.++++.....
T Consensus       554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A  610 (638)
T KOG1126|consen  554 PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA  610 (638)
T ss_pred             CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence            999999999999999999999999999999999999999999999999998876544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=1.8e-11  Score=83.68  Aligned_cols=136  Identities=13%  Similarity=0.130  Sum_probs=102.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------HHH---HHH-----HHHHHHHHhhHHHH
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------DEK---HQA-----NGLRLSCYLNNAAC   68 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------~~~---~~~-----~~~~~~~~~~~a~~   68 (159)
                      ...+...|..++..|++++|+..|.+++...|.++....             +..   ...     .+.....+.++|.+
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  144 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC  144 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            345566777777777777777777777776554321100             000   000     01123457789999


Q ss_pred             HhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           69 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        69 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      +...|++++|...+.+++..+|.++.+++.+|.++...|++++|...+++++...|.++........+....+...+
T Consensus       145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (234)
T TIGR02521       145 ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA  221 (234)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence            99999999999999999999999999999999999999999999999999999989888888777777766555444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.44  E-value=7.7e-12  Score=101.62  Aligned_cols=115  Identities=16%  Similarity=0.122  Sum_probs=96.3

Q ss_pred             ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 031461           24 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH  103 (159)
Q Consensus        24 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  103 (159)
                      |++++|+..|.+++...|.                ..++.++|.++..+|++++|+..+++++.++|+++.++..+|.++
T Consensus       590 Gr~~eAl~~~~~AL~l~P~----------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL  653 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS----------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL  653 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5555555555555555442                345889999999999999999999999999999999999999999


Q ss_pred             HhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461          104 LKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus       104 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                      ...|++++|+..|++++.++|+++.++..++.+...+++..+... .|.+++
T Consensus       654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~-~l~~Al  704 (987)
T PRK09782        654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH-YARLVI  704 (987)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence            999999999999999999999999999999999988888766544 555443

>PRK12370 invasion protein regulator; Provisional

Probab=99.44  E-value=4.2e-12  Score=98.28  Aligned_cols=106  Identities=15%  Similarity=0.122  Sum_probs=91.4

Q ss_pred             cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461           23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  102 (159)
Q Consensus        23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  102 (159)
                      .+++.+|+..+.+++.++|.++               .++..+|.++...|++++|+..+++++.++|+++.+++.+|.+
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  381 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNP---------------QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN  381 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3568999999999999988764               4488999999999999999999999999999999999999999


Q ss_pred             HHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461          103 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus       103 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      +...|++++|+..+++++.++|.++........+....++.
T Consensus       382 l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~  422 (553)
T PRK12370        382 LFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI  422 (553)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH
Confidence            99999999999999999999999876654444433333433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.44  E-value=6.3e-12  Score=89.57  Aligned_cols=115  Identities=24%  Similarity=0.278  Sum_probs=102.9

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..++.+.++|+.++..|++..|+..|..|++.+|++               -.+++.+|.+|+.+|.-..|+.++.++|.
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------------Y~aifrRaT~yLAmGksk~al~Dl~rVle  100 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------------YQAIFRRATVYLAMGKSKAALQDLSRVLE  100 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------------HHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence            457899999999999999999999999999997765               45588999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV---VKLVYMELK  137 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~  137 (159)
                      +.|+...+-+.+|.++.++|.++.|..+|..++..+|++..   ++..+..+.
T Consensus       101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~  153 (504)
T KOG0624|consen  101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ  153 (504)
T ss_pred             cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence            99999999999999999999999999999999999997644   444444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.44  E-value=5.7e-12  Score=90.50  Aligned_cols=113  Identities=11%  Similarity=-0.035  Sum_probs=98.1

Q ss_pred             cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461           23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  102 (159)
Q Consensus        23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  102 (159)
                      .+..+.+|..+.++|...+.++..           ....++++|.++..+|++++|+..|++++.++|+++.+++.+|.+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~-----------~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  107 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEE-----------RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIY  107 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHh-----------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            456788999999988755433322           256699999999999999999999999999999999999999999


Q ss_pred             HHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461          103 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus       103 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +...|++++|+..|.+++.++|++..++..++.+....++.++.
T Consensus       108 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA  151 (296)
T PRK11189        108 LTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA  151 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999999998887766665554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.43  E-value=8.7e-12  Score=84.18  Aligned_cols=136  Identities=21%  Similarity=0.101  Sum_probs=80.1

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC----------------hHHH---HHHHHHHHHHHhhHHH
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT----------------DDEK---HQANGLRLSCYLNNAA   67 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------------~~~~---~~~~~~~~~~~~~~a~   67 (159)
                      -..++...++|..|++.|++..|..-++++|+.+|++...-                .+..   ..+.+-...+++|.|.
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~  111 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence            34567777888888888888888888888888877642210                0000   0011122334555555


Q ss_pred             HHhhhhCHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           68 CKLKLEDYSETSSLCTKVLEL--EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        68 ~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      .....|+|++|...|.+|+..  .|..+..+-++|.|-.+.|+++.|...|++++.++|+++.....+...+..-++
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~  188 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD  188 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence            555555555555555555542  234455566666666666666666666666666666666666555555544333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.43  E-value=1.5e-11  Score=86.52  Aligned_cols=114  Identities=11%  Similarity=0.027  Sum_probs=97.2

Q ss_pred             HHHHHhhhHH-HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           11 ERKKHDGNLL-FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        11 ~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ...+..|..+ +..|+|++|+..|...+...|.++-.            ..+++.+|.+|+..|++++|+..|..++...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a------------~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y  210 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQ------------PNANYWLGQLNYNKGKKDDAAYYFASVVKNY  210 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcch------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4455566655 66799999999999999998876432            4568999999999999999999999999988


Q ss_pred             Ccc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           90 PLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        90 ~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      |++   +.+++.+|.++..+|++++|+..|++++...|+...+.....++
T Consensus       211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            774   88999999999999999999999999999999987665554443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.42  E-value=1.5e-12  Score=73.43  Aligned_cols=66  Identities=30%  Similarity=0.424  Sum_probs=61.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHHhhc
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLEL   88 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~   88 (159)
                      +..+...|..++..|+|++|+.+|.++++++|.+               ..+++++|.++..+| ++++|+.++++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            6788999999999999999999999999998775               456999999999999 799999999999999


Q ss_pred             CC
Q 031461           89 EP   90 (159)
Q Consensus        89 ~~   90 (159)
                      +|
T Consensus        68 ~P   69 (69)
T PF13414_consen   68 DP   69 (69)
T ss_dssp             ST
T ss_pred             Cc
Confidence            98

...

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=7.3e-12  Score=92.51  Aligned_cols=138  Identities=18%  Similarity=0.252  Sum_probs=71.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC-------------h------HHHHHHHHHHHHHHhhHHHHH
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-------------D------DEKHQANGLRLSCYLNNAACK   69 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------------~------~~~~~~~~~~~~~~~~~a~~~   69 (159)
                      .++.+.-.|.-+|-.|++..|...|..+|.+.+..+..-             .      ..-..+++-...+|+-+|...
T Consensus       325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~  404 (606)
T KOG0547|consen  325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR  404 (606)
T ss_pred             HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence            355566666666666666666666666666655432210             0      000001111122355555555


Q ss_pred             hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +-+++|++|+.+|++++.++|.++-++..++.+.++++.++++...|+.+....|+.+++....+.+.....++.+.
T Consensus       405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A  481 (606)
T KOG0547|consen  405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA  481 (606)
T ss_pred             HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555444444443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.42  E-value=5.5e-12  Score=99.33  Aligned_cols=116  Identities=18%  Similarity=0.137  Sum_probs=92.3

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHH----HHHHHHHHhhcCCc
Q 031461           16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSE----TSSLCTKVLELEPL   91 (159)
Q Consensus        16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~~~   91 (159)
                      .|..+...|++++|+..|.+++...|.+               ..++.++|.++..+|++++    |+..+++++.++|+
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~  282 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDG---------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD  282 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence            3566677788888888888888775543               3447788888888888885    78888888888888


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      ++.++..+|.++...|++++|+..+++++.++|+++.+...++.+....++..+.
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA  337 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAA  337 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            8888888888888888888888888888888888888888888877776666544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.41  E-value=2.7e-11  Score=94.69  Aligned_cols=133  Identities=16%  Similarity=0.119  Sum_probs=119.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+...||..|..|++++|...+..+|+.+|..+.               +|..+|.+|..+|+.++|+.+.--|-.++
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---------------ay~tL~~IyEqrGd~eK~l~~~llAAHL~  203 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI---------------AYYTLGEIYEQRGDIEKALNFWLLAAHLN  203 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh---------------hHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            677889999999999999999999999999887654               39999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM  158 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (159)
                      |.+...|...++....+|++..|.-+|.+|++..|.+.........+..++++.... ...|..+|.-+
T Consensus       204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~A-m~~f~~l~~~~  271 (895)
T KOG2076|consen  204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRA-METFLQLLQLD  271 (895)
T ss_pred             CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHH-HHHHHHHHhhC
Confidence            999999999999999999999999999999999999999888888888888887555 44777777543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.40  E-value=2.6e-11  Score=76.73  Aligned_cols=110  Identities=20%  Similarity=0.206  Sum_probs=97.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ...+...|...++.|+|..|++.|+.+....|..+-.            ..+.+.++.+|++.++|++|+..+++-|+++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------------~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            4567889999999999999999999999888765543            4568899999999999999999999999999


Q ss_pred             Ccc---HHHHHHHHHHHHhhCC---------------HHHHHHHHHHHHhcCCCcHHHHH
Q 031461           90 PLN---VKALYRRSQAHLKTSE---------------LEKAEADIKRALTIDPNNRVVKL  131 (159)
Q Consensus        90 ~~~---~~~~~~~~~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~~  131 (159)
                      |.+   +.++|.+|.+++.+..               ...|...|++++...|+++-+..
T Consensus        78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            987   6789999999999987               88999999999999999865543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.40  E-value=1.4e-11  Score=78.44  Aligned_cols=102  Identities=15%  Similarity=0.037  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHH
Q 031461           31 KKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE  110 (159)
Q Consensus        31 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  110 (159)
                      +.|.+++...|.+               ......+|.++...|++++|...++.++..+|.++.+++.+|.++...|+++
T Consensus         4 ~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~   68 (135)
T TIGR02552         4 ATLKDLLGLDSEQ---------------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE   68 (135)
T ss_pred             hhHHHHHcCChhh---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            3567777775554               3447899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 031461          111 KAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ  147 (159)
Q Consensus       111 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  147 (159)
                      +|+..|.+++..+|+++..+..++.+....++..+..
T Consensus        69 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~  105 (135)
T TIGR02552        69 EAIDAYALAAALDPDDPRPYFHAAECLLALGEPESAL  105 (135)
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999998887765543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.39  E-value=2.7e-11  Score=95.44  Aligned_cols=121  Identities=8%  Similarity=0.004  Sum_probs=102.2

Q ss_pred             HHHHHhhhHHHHcccHHH----HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461           11 ERKKHDGNLLFRAGKYWR----ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ..+...|..++..|++++    |+..|.+++...|.+               ..++.++|.++...|++++|+..+++++
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~g~~~eA~~~l~~al  311 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN---------------VRIVTLYADALIRTGQNEKAIPLLQQSL  311 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445668899999999986    899999999997765               3458899999999999999999999999


Q ss_pred             hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      .++|+++.++..+|.++...|++++|+..|++++...|++.......+.+....++.++.
T Consensus       312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA  371 (656)
T PRK15174        312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA  371 (656)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999999999999998876665556666555554443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.39  E-value=5.5e-11  Score=82.57  Aligned_cols=126  Identities=12%  Similarity=0.025  Sum_probs=106.4

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh--------hCHHHHHHHH
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--------EDYSETSSLC   82 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~   82 (159)
                      +.+...|..++..|++++|+..|.++++..|+++..            ..+++.+|.++...        |++++|+..+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~  138 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF  138 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            456788999999999999999999999998877654            23477888888776        8999999999


Q ss_pred             HHHhhcCCccHHHH-----------------HHHHHHHHhhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHH
Q 031461           83 TKVLELEPLNVKAL-----------------YRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYMELKDKQRE  142 (159)
Q Consensus        83 ~~al~~~~~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~  142 (159)
                      ++++..+|++..++                 +.+|.++...|++.+|+..|++++...|++   +.++..++.+...+++
T Consensus       139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~  218 (235)
T TIGR03302       139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL  218 (235)
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence            99999999885442                 467899999999999999999999997765   5788899999888888


Q ss_pred             HHHHHH
Q 031461          143 YAKYQA  148 (159)
Q Consensus       143 ~~~~~~  148 (159)
                      ..+...
T Consensus       219 ~~~A~~  224 (235)
T TIGR03302       219 KDLAQD  224 (235)
T ss_pred             HHHHHH
Confidence            766543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.38  E-value=1.5e-11  Score=79.09  Aligned_cols=98  Identities=9%  Similarity=0.049  Sum_probs=88.6

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ....+.+|..+...|++++|...|+.+..++|.+...|+++|-|+..+|+|.+|+..|.++..++|+|+.+....+.|.-
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            44477889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 031461          139 KQREYAKYQAEIFGTMLSK  157 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~  157 (159)
                      .+++.... +..|..+.+.
T Consensus       115 ~lG~~~~A-~~aF~~Ai~~  132 (157)
T PRK15363        115 ACDNVCYA-IKALKAVVRI  132 (157)
T ss_pred             HcCCHHHH-HHHHHHHHHH
Confidence            88887665 4477766554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.38  E-value=2.8e-12  Score=95.99  Aligned_cols=118  Identities=15%  Similarity=0.121  Sum_probs=103.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      .+....+|..|+-.|+|+.|+++|+.||...|++               ..+|+.+|.+.....+.++|+..|++|+++.
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd---------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq  494 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND---------------YLLWNRLGATLANGNRSEEAISAYNRALQLQ  494 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch---------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcC
Confidence            4567778999999999999999999999998876               4569999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN----------NRVVKLVYMELKDKQRE  142 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~  142 (159)
                      |..+++.|++|.++..+|.|++|+..|-.|+.+.+.          +..++..++.+...+.+
T Consensus       495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~  557 (579)
T KOG1125|consen  495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR  557 (579)
T ss_pred             CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999765          13477777755544443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.38  E-value=1.3e-10  Score=79.20  Aligned_cols=128  Identities=23%  Similarity=0.186  Sum_probs=100.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      ..+.+...|..++..|+|.+|+..|..++...|.++-.            ..+.+.+|.++...|+|+.|+..+++.++.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a------------~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA------------PQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35778999999999999999999999999998876543            566889999999999999999999999999


Q ss_pred             CCcc---HHHHHHHHHHHHhhC-----------CHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHHHHHHHHH
Q 031461           89 EPLN---VKALYRRSQAHLKTS-----------ELEKAEADIKRALTIDPNNR---VVKLVYMELKDKQREYAKYQA  148 (159)
Q Consensus        89 ~~~~---~~~~~~~~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~~  148 (159)
                      .|++   +.+++.+|.+++...           ...+|+..|+..+...|+.+   .+...+..+...+.+.+-...
T Consensus        72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia  148 (203)
T PF13525_consen   72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA  148 (203)
T ss_dssp             -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9886   668999999987654           34589999999999999984   555666667666666544433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.37  E-value=1.9e-11  Score=98.06  Aligned_cols=128  Identities=18%  Similarity=0.146  Sum_probs=101.7

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|..+...|++++|+..|.+++...|.+               ..++.++|.++...|+ .+|+..+++++.+.|
T Consensus       771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~  834 (899)
T TIGR02917       771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN---------------AVVLNNLAWLYLELKD-PRALEYAEKALKLAP  834 (899)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence            445566777777788888888888877775543               3447788888888888 778999999998888


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                      +++..+..+|.++...|++++|+..|++++..+|.++.+...+..+....++..+... .+.+|.
T Consensus       835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~  898 (899)
T TIGR02917       835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK-ELDKLL  898 (899)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHh
Confidence            8888888999999999999999999999999999998888888888887777655533 555543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.36  E-value=2.8e-11  Score=81.76  Aligned_cols=124  Identities=18%  Similarity=0.188  Sum_probs=97.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ++.++..|.-++.+|+|++|...|++|+.. |..+..            ..++.|+|.|.++.|+++.|..++++++.++
T Consensus       103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~------------s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063         103 GDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEP------------SDTLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             cchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCc------------chhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence            344555555555555566666555555542 222222            4568999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      |+.+.+...++..++..|+|-.|..++++.....+-+.+.....-++.+.++.....
T Consensus       170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a  226 (250)
T COG3063         170 PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA  226 (250)
T ss_pred             cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence            999999999999999999999999999999999888888888877887777665443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.35  E-value=7.3e-11  Score=98.24  Aligned_cols=127  Identities=17%  Similarity=0.153  Sum_probs=101.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ...+..+|..++..|++++|+.+|.+++...|.++... .....+......+...+|.++...|++++|+..+++++.++
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~  381 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD-KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD  381 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh-HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            45567788888888888888888888888876544321 11111122223334567889999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      |+++.+++.+|.++...|++++|+..|++++.++|++..+...+..+.
T Consensus       382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998877776665

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.35  E-value=6.5e-11  Score=95.07  Aligned_cols=122  Identities=27%  Similarity=0.290  Sum_probs=100.3

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|++++|+..|.+++...|.++               .++..+|.++...|++++|+..+++++..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~  188 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL---------------YAKLGLAQLALAENRFDEARALIDEVLTA  188 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---------------hhHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            456678899999999999999999999999877653               23778888888888888888888888888


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      +|.++.+++.+|.++...|++++|...|++++..+|.++.+...+..+....++..+
T Consensus       189 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~  245 (899)
T TIGR02917       189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEE  245 (899)
T ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            888888888888888888888888888888888888888777777777655554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.35  E-value=9.3e-12  Score=70.93  Aligned_cols=71  Identities=25%  Similarity=0.415  Sum_probs=65.7

Q ss_pred             HHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           66 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        66 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      ...|...++|++|+.++++++.++|+++..++.+|.++..+|++.+|...|++++...|+++.+......+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            46788999999999999999999999999999999999999999999999999999999998877665543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.35  E-value=2e-10  Score=80.20  Aligned_cols=127  Identities=17%  Similarity=0.145  Sum_probs=103.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ++.....|..++..|+|+.|+..|+.++...|..+.            ...+.+.+|.++.++++|++|+..+++.++..
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~------------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            556778999999999999999999999998876532            24557899999999999999999999999999


Q ss_pred             Ccc---HHHHHHHHHHHHhhC------------------CHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHHHHH
Q 031461           90 PLN---VKALYRRSQAHLKTS------------------ELEKAEADIKRALTIDPNN---RVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        90 ~~~---~~~~~~~~~~~~~~~------------------~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~  145 (159)
                      |++   +.+++.+|.++..++                  ...+|+..|+..+...|+.   +.+...+..++.++.+++-
T Consensus       100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~  179 (243)
T PRK10866        100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL  179 (243)
T ss_pred             cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence            877   678899998875554                  1357889999999999987   4566666777777766654


Q ss_pred             HHH
Q 031461          146 YQA  148 (159)
Q Consensus       146 ~~~  148 (159)
                      .-.
T Consensus       180 ~ia  182 (243)
T PRK10866        180 SVA  182 (243)
T ss_pred             HHH
Confidence            333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.34  E-value=5.2e-11  Score=81.72  Aligned_cols=121  Identities=19%  Similarity=0.167  Sum_probs=109.5

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|...+..|+|..|+..+.++..+.|.++.               ++..+|.+|.+.|+++.|...|.+++++.|
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---------------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~  165 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE---------------AWNLLGAALDQLGRFDEARRAYRQALELAP  165 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh---------------hhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence            45566899999999999999999999999888754               499999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      ..+.+.-++|..+.-.|+++.|...+.++...-+.++.+...+..+-...+...+.
T Consensus       166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence            99999999999999999999999999999999999999998888887766555443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.34  E-value=8.7e-11  Score=81.44  Aligned_cols=114  Identities=16%  Similarity=0.202  Sum_probs=102.2

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      +.+++.|..++..|+|..|...|..-++..|+++-.            ..+++.+|.+++.+|+|..|...|..+++-.|
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P  209 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYP  209 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence            448889999999999999999999999999876554            45699999999999999999999999999888


Q ss_pred             cc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           91 LN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        91 ~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      ++   +++++.+|.+...+|+.++|...|+++++..|+.+.+......+
T Consensus       210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            76   78899999999999999999999999999999998776655444

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=9.5e-12  Score=88.58  Aligned_cols=153  Identities=27%  Similarity=0.341  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh---HH-HHHHHHHHHHHHhhHHHHHhhhhCHHHHH
Q 031461            4 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD---DE-KHQANGLRLSCYLNNAACKLKLEDYSETS   79 (159)
Q Consensus         4 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~   79 (159)
                      ...+...+..++.|+..++.++|..|...|.+++......+....   ++ ...+..+...++.+++.+-++.+.+..|+
T Consensus       216 ~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~  295 (372)
T KOG0546|consen  216 DKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGAR  295 (372)
T ss_pred             chhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcce
Confidence            345667788889999999999999999999999998653221111   11 34466777888999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461           80 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus        80 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (159)
                      ..+..+++.++...+++++++..+..+.++++|.+++..+....|++..+...+..+.....++....++.+++||.
T Consensus       296 ~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  296 FRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             eccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999884

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.31  E-value=5.3e-11  Score=99.07  Aligned_cols=125  Identities=18%  Similarity=0.191  Sum_probs=107.2

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK   94 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~   94 (159)
                      ..|..++..|++++|+..|.+++...|.+               ..++..+|.++..+|++++|+.+++++++++|++..
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~---------------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~  338 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKD---------------SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN  338 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence            45888999999999999999999997765               345899999999999999999999999999997643


Q ss_pred             --------------HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461           95 --------------ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus        95 --------------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                                    .....|.++...|++++|+..|++++.++|++..+...++.+....++..+... .|.++.
T Consensus       339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~y~~aL  412 (1157)
T PRK11447        339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER-YYQQAL  412 (1157)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence                          224568899999999999999999999999999999999999888877766544 555544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.31  E-value=1.1e-11  Score=69.67  Aligned_cols=67  Identities=31%  Similarity=0.399  Sum_probs=61.9

Q ss_pred             hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      +..|+|++|+..+++++..+|+++.+++.+|.++...|++++|...+.+++..+|+++.++..++.|
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            5789999999999999999999999999999999999999999999999999999998888777654

...

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.30  E-value=2.9e-10  Score=84.31  Aligned_cols=84  Identities=23%  Similarity=0.191  Sum_probs=62.8

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-RVVKLVYMELKDK  139 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~  139 (159)
                      .+.++|.++...|++++|+.++++++..+|++..+++.+|.++...|++++|+..|++++..+|.+ ..+...+..+...
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence            456778888888888888888888888888888888888888888888888888888888877765 3444455555544


Q ss_pred             HHHHH
Q 031461          140 QREYA  144 (159)
Q Consensus       140 ~~~~~  144 (159)
                      .++.+
T Consensus       262 ~g~~~  266 (389)
T PRK11788        262 LGDEA  266 (389)
T ss_pred             cCCHH
Confidence            44433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.29  E-value=5.3e-11  Score=83.22  Aligned_cols=93  Identities=26%  Similarity=0.245  Sum_probs=85.8

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      +-+-|.-.++.++|.+|+..|.+||.++|.++..|.+++.+|.++|.|+.|+++++.++.++|....++..++.++..++
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 031461          142 EYAKYQAEIFGTML  155 (159)
Q Consensus       142 ~~~~~~~~~~~~~~  155 (159)
                      ++.+.... |++..
T Consensus       164 k~~~A~~a-ykKaL  176 (304)
T KOG0553|consen  164 KYEEAIEA-YKKAL  176 (304)
T ss_pred             cHHHHHHH-HHhhh
Confidence            98887664 77653

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.29  E-value=2.7e-10  Score=84.50  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=65.0

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN   92 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~   92 (159)
                      +...|..+...|++++|+..|.+++...|..               ..++..+|.++...|++++|+..+++++..+|.+
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQC---------------VRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            4456666677777777777777777765442               2235556666666666666666666666655544


Q ss_pred             -HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           93 -VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        93 -~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                       ..++..++.+|...|++++|+..+++++...|+.... ..+..+..
T Consensus       248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~  293 (389)
T PRK11788        248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLE  293 (389)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHH
Confidence             3344555666666666666666666666666654332 33444333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.27  E-value=1.2e-10  Score=93.46  Aligned_cols=113  Identities=9%  Similarity=0.022  Sum_probs=102.6

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|..+...|++.+|+..|.+++...|.++               .++..+|.++...|++++|+..+++++..+|
T Consensus        50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P  114 (765)
T PRK10049         50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND---------------DYQRGLILTLADAGQYDEALVKAKQLVSGAP  114 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            4477889999999999999999999999977763               3377999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      +++. ++.+|.++...|++++|+..+++++.+.|+++.+...+..+...
T Consensus       115 ~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~  162 (765)
T PRK10049        115 DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN  162 (765)
T ss_pred             CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999 99999999999999999999999999999999988887776643

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=3.1e-10  Score=82.55  Aligned_cols=142  Identities=16%  Similarity=0.168  Sum_probs=117.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ++.+.-+|..++...+.+.|+..|++++.++|.....   -..-...-....+...|.-.++.|.|.+|.++|..+|.++
T Consensus       203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id  279 (486)
T KOG0550|consen  203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID  279 (486)
T ss_pred             hHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence            5678888999999999999999999999998764221   1111122234457888999999999999999999999999


Q ss_pred             Ccc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461           90 PLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus        90 ~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                      |++    +..|.++|.+...+|+..+|+..+..++.++|.-..+....+.|+..+++..+.-+ .|.+..
T Consensus       280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~-d~~~a~  348 (486)
T KOG0550|consen  280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE-DYEKAM  348 (486)
T ss_pred             ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            986    67799999999999999999999999999999999999999999988888765433 454443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.24  E-value=1e-10  Score=90.27  Aligned_cols=104  Identities=23%  Similarity=0.197  Sum_probs=94.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH--HHHHHhh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS--LCTKVLE   87 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~   87 (159)
                      +..++..|..+..+|.+.+|...|..++.++|.+++.               ...+|.++...|+..-|..  .+..+++
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s---------------~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS---------------MTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH---------------HHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            5667889999999999999999999999998887554               7889999999998887777  9999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  128 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  128 (159)
                      ++|.++++|+.+|.++..+|+.+.|..+|.-|+++++.+|-
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999999999999999999999988863

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.23  E-value=6.4e-11  Score=65.94  Aligned_cols=64  Identities=22%  Similarity=0.240  Sum_probs=57.3

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV   93 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~   93 (159)
                      ..|..++..|+|++|+..|+.++...|.+               ..++..+|.++..+|++++|+..+++++.++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDN---------------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            57899999999999999999999998765               45699999999999999999999999999999875

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.22  E-value=3.5e-10  Score=86.02  Aligned_cols=120  Identities=13%  Similarity=0.020  Sum_probs=109.6

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..++..+..+|..++|...++.....++..|..++.               +.-.|.....+|+-++|..++..+++.++
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges---------------lAmkGL~L~~lg~~~ea~~~vr~glr~d~   72 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGES---------------LAMKGLTLNCLGKKEEAYELVRLGLRNDL   72 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchh---------------HHhccchhhcccchHHHHHHHHHHhccCc
Confidence            457778889999999999999999999988876654               66778888899999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      .+..+|..+|.++....+|++|+++|+.|+.++|+|.+++.-+.-++.+++..+-
T Consensus        73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999988877643

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.22  E-value=1.5e-09  Score=67.57  Aligned_cols=105  Identities=22%  Similarity=0.134  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHH
Q 031461            5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK   84 (159)
Q Consensus         5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   84 (159)
                      ..++....+--.|...-..|+.+.|++.|.+++.+.|..               .++|+|++..+...|+.++|+.++++
T Consensus        38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r---------------aSayNNRAQa~RLq~~~e~ALdDLn~  102 (175)
T KOG4555|consen   38 QAIKASRELELKAIALAEAGDLDGALELFGQALCLAPER---------------ASAYNNRAQALRLQGDDEEALDDLNK  102 (175)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc---------------hHhhccHHHHHHHcCChHHHHHHHHH
Confidence            356677777788999999999999999999999998876               45599999999999999999999999


Q ss_pred             HhhcCCcc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461           85 VLELEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDP  124 (159)
Q Consensus        85 al~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  124 (159)
                      ++.+..+.    ..++..+|.+|..+|+-+.|..+|+.+-++-.
T Consensus       103 AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  103 ALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            99987543    56788999999999999999999999977754

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.22  E-value=5.4e-10  Score=88.25  Aligned_cols=119  Identities=18%  Similarity=0.147  Sum_probs=102.9

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+.-+++.+|-.|+|..+..++..++......            .+....++++|.+|..+|+|++|..+|.++++.+|
T Consensus       271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~------------~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~  338 (1018)
T KOG2002|consen  271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENK------------SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN  338 (1018)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh------------HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence            345566777888888888888888777764322            33456699999999999999999999999999999


Q ss_pred             cc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           91 LN-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        91 ~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      ++ .-+++.+|+.+...|++..|+.+|++++...|++......++.+.....
T Consensus       339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            98 8889999999999999999999999999999999999999999987774

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.21  E-value=1.2e-09  Score=63.87  Aligned_cols=86  Identities=31%  Similarity=0.354  Sum_probs=78.7

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      ++.++|.++...|++++|+..+++++...|.+..+++.+|.++...+++++|+..|.+++...|.+..+...++.+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999998888888888777


Q ss_pred             HHHHHH
Q 031461          141 REYAKY  146 (159)
Q Consensus       141 ~~~~~~  146 (159)
                      ++....
T Consensus        82 ~~~~~a   87 (100)
T cd00189          82 GKYEEA   87 (100)
T ss_pred             HhHHHH
Confidence            765544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.20  E-value=6.6e-10  Score=71.73  Aligned_cols=128  Identities=17%  Similarity=0.124  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      +...+...+......+..+++..+...+...+.-.|..+-            ...+.+.+|.+++..|++++|...++.+
T Consensus         7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y------------a~~A~l~lA~~~~~~g~~~~A~~~l~~~   74 (145)
T PF09976_consen    7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY------------AALAALQLAKAAYEQGDYDEAKAALEKA   74 (145)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3445666666777777788888887777777776665422            2455677888888888888888888888


Q ss_pred             hhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           86 LELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        86 l~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +...|+.   +.+.+++|.++...|++++|+..+.. ..-.+-.+.+....+.|....++..+.
T Consensus        75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A  137 (145)
T PF09976_consen   75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEA  137 (145)
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHH
Confidence            8776544   45777788888888888888888755 233344466777777777777666554

>PLN02789 farnesyltranstransferase

Probab=99.20  E-value=8.1e-10  Score=79.96  Aligned_cols=114  Identities=13%  Similarity=-0.052  Sum_probs=90.2

Q ss_pred             HHHHhhhHHHHcc-cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCH--HHHHHHHHHHhhc
Q 031461           12 RKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY--SETSSLCTKVLEL   88 (159)
Q Consensus        12 ~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~   88 (159)
                      ....+|.++...| .+++++.++.+++...|.+.               .+|..++.+...++..  ++++.++++++..
T Consensus        73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny---------------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~  137 (320)
T PLN02789         73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY---------------QIWHHRRWLAEKLGPDAANKELEFTRKILSL  137 (320)
T ss_pred             HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch---------------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHh
Confidence            4455566666666 56777777777777766542               3478888888778764  6788899999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      +|.+..+|..+|-++...|++++|+.++.+++..+|.|.+++.....+...+
T Consensus       138 dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        138 DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999888888776543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.20  E-value=5.6e-10  Score=69.42  Aligned_cols=99  Identities=18%  Similarity=-0.003  Sum_probs=86.6

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      +.+++.|..+-..|+.++|+.+|++++......            +....++..+|.++..+|++++|+..+++++...|
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p   69 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFP   69 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            457889999999999999999999999964332            22356788999999999999999999999999988


Q ss_pred             c---cHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461           91 L---NVKALYRRSQAHLKTSELEKAEADIKRALT  121 (159)
Q Consensus        91 ~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  121 (159)
                      +   +.......+.+++..|++++|+..+-.++.
T Consensus        70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8   788888899999999999999999988774

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.18  E-value=8.6e-10  Score=88.52  Aligned_cols=111  Identities=11%  Similarity=0.005  Sum_probs=100.2

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ......|..+...|++++|+..+.+++...|.++               .++..+|.++...|++++|+..+++++.++|
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~---------------~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P  424 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ---------------GLRIDYASVLQARGWPRAAENELKKAEVLEP  424 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence            3456678899999999999999999999987763               4589999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      +++.+++.+|.++...|++++|...+++++...|+++.+...-...
T Consensus       425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999776654443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.4e-09  Score=76.42  Aligned_cols=112  Identities=18%  Similarity=0.166  Sum_probs=94.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh---CHHHHHHHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTKVL   86 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al   86 (159)
                      ++...-+|.+++..|++..|...|.+++++.++++..               +..+|.++....   .-.++...+++++
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~---------------~~g~aeaL~~~a~~~~ta~a~~ll~~al  220 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI---------------LLGLAEALYYQAGQQMTAKARALLRQAL  220 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            5667788999999999999999999999998887654               666666654433   5788999999999


Q ss_pred             hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      .+||.++.+.+.+|..++..|+|.+|+..|+..+.+.|.+..-...+...
T Consensus       221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999998775544444443

>PLN02789 farnesyltranstransferase

Probab=99.16  E-value=2.8e-09  Score=77.16  Aligned_cols=119  Identities=14%  Similarity=0.053  Sum_probs=102.3

Q ss_pred             HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHHhhcCCccHHHHHH
Q 031461           20 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEPLNVKALYR   98 (159)
Q Consensus        20 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~   98 (159)
                      +...+.++.|+..+.++|.+.|.+               ..++..++.+...+| .+++++.++++++..+|.+..+|..
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~---------------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGN---------------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            456678999999999999997775               456899999999998 6899999999999999999999999


Q ss_pred             HHHHHHhhCCH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           99 RSQAHLKTSEL--EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus        99 ~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      ++.++..+|..  ++++.++.+++..+|.|..++...+-+...++..++. -.-+.++
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee-L~~~~~~  168 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE-LEYCHQL  168 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH-HHHHHHH
Confidence            99999999874  7889999999999999999999999998888776543 3344443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.14  E-value=4.8e-10  Score=75.50  Aligned_cols=114  Identities=18%  Similarity=0.093  Sum_probs=103.0

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      ++..++++|+.+-+-|-+..|.--|.+++.+.|.-|               .+++.+|..+..-|+|+.|...|+.++++
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~---------------~vfNyLG~Yl~~a~~fdaa~eaFds~~EL  128 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP---------------EVFNYLGIYLTQAGNFDAAYEAFDSVLEL  128 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH---------------HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence            588999999999999999999999999999977754               45999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      ||.+..+..++|..++--|++.-|.+.+.+-.+-+|+||--.-++-...
T Consensus       129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E  177 (297)
T COG4785         129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE  177 (297)
T ss_pred             CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            9999999999999999999999999999999999999985444444433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.13  E-value=1.8e-09  Score=86.60  Aligned_cols=121  Identities=10%  Similarity=0.030  Sum_probs=75.9

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------HHHHHHH------HHHHHHHhhHHHHH
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------DEKHQAN------GLRLSCYLNNAACK   69 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------~~~~~~~------~~~~~~~~~~a~~~   69 (159)
                      .+...+..+...++.|++..|+..|.++++..|.+++.-.             .......      ......+..+|.++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            3556788999999999999999999999999887642200             0000000      01111222335566


Q ss_pred             hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461           70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV  129 (159)
Q Consensus        70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  129 (159)
                      ..+|+|++|+..+++++..+|+++.+++.++.++...++.++|+..++++...+|.+...
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~  172 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY  172 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence            666666666666666666666666666666666666666666666666666666664443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.13  E-value=3.4e-09  Score=78.55  Aligned_cols=122  Identities=17%  Similarity=0.036  Sum_probs=106.7

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      ..+..+...+..|+++.|...+...+...|+++               ..+...+.+++..++..+|.+.+++++.++|.
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~---------------~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~  372 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP---------------YYLELAGDILLEANKAKEAIERLKKALALDPN  372 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Confidence            345667788899999999999999888777653               33667889999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA  148 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~  148 (159)
                      .+...+++|++|...|+.++|+..+.+.+..+|+|+..+..++.....++...+...
T Consensus       373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~  429 (484)
T COG4783         373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL  429 (484)
T ss_pred             ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence            999999999999999999999999999999999999999999999988877666544

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.12  E-value=4.1e-09  Score=80.04  Aligned_cols=141  Identities=21%  Similarity=0.182  Sum_probs=111.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..+...++|.+|+..|.+++.+....-..+       .+....++.|+|..|.+.|+|++|..+|++|+.+
T Consensus       240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I  312 (508)
T KOG1840|consen  240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI  312 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            445566799999999999999999999999865321111       1334777999999999999999999999999876


Q ss_pred             C--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-----CCc---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           89 E--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTID-----PNN---RVVKLVYMELKDKQREYAKYQAEIFG  152 (159)
Q Consensus        89 ~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (159)
                      .        |.-+..+...+.++...+++++|+..+++++++.     +.|   +.+...++.+....+++++.+. .|+
T Consensus       313 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~-~~k  391 (508)
T KOG1840|consen  313 YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE-LYK  391 (508)
T ss_pred             HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH-HHH
Confidence            4        3447778889999999999999999999998773     233   5677778888888888877754 677


Q ss_pred             HHhhh
Q 031461          153 TMLSK  157 (159)
Q Consensus       153 ~~~~~  157 (159)
                      +...+
T Consensus       392 ~ai~~  396 (508)
T KOG1840|consen  392 KAIQI  396 (508)
T ss_pred             HHHHH
Confidence            66554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.12  E-value=1.2e-10  Score=82.74  Aligned_cols=121  Identities=20%  Similarity=0.203  Sum_probs=105.6

Q ss_pred             hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461            3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC   82 (159)
Q Consensus         3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   82 (159)
                      +++.++.+...+-.+..++..|.++.||+.|..+|.+.|..               ..+|..++.++++++.+-.|+.+|
T Consensus       107 Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~---------------a~l~~kr~sv~lkl~kp~~airD~  171 (377)
T KOG1308|consen  107 TEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL---------------AILYAKRASVFLKLKKPNAAIRDC  171 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch---------------hhhcccccceeeeccCCchhhhhh
Confidence            67788899999999999999999999999999999997765               445899999999999999999999


Q ss_pred             HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      ..++.++|+.+..+-.+|.+...+|+|.+|..++..+.+++-+ +.+-.++..+...
T Consensus       172 d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~  227 (377)
T KOG1308|consen  172 DFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPN  227 (377)
T ss_pred             hhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999888653 3334444444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.12  E-value=1.6e-09  Score=79.69  Aligned_cols=91  Identities=24%  Similarity=0.302  Sum_probs=82.2

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      +...|...+..|+|++|+..|+++|.++|+++.+++.+|.++..+|++++|+..+.+++.++|+++.++..++.+...++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45678888999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHH
Q 031461          142 EYAKYQAEIFGT  153 (159)
Q Consensus       142 ~~~~~~~~~~~~  153 (159)
                      ++.+... .|.+
T Consensus        85 ~~~eA~~-~~~~   95 (356)
T PLN03088         85 EYQTAKA-ALEK   95 (356)
T ss_pred             CHHHHHH-HHHH
Confidence            8766543 3443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.12  E-value=6.5e-10  Score=62.31  Aligned_cols=68  Identities=28%  Similarity=0.280  Sum_probs=59.2

Q ss_pred             HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHH
Q 031461           20 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRR   99 (159)
Q Consensus        20 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   99 (159)
                      ++..|+|++|+..|.+++...|.+               ..++..+|.|+...|++++|...+++++..+|+++.++.-+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDN---------------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTS---------------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            367899999999999999998876               44588999999999999999999999999999998887776


Q ss_pred             HHH
Q 031461          100 SQA  102 (159)
Q Consensus       100 ~~~  102 (159)
                      +.+
T Consensus        66 a~i   68 (68)
T PF14559_consen   66 AQI   68 (68)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            653

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.11  E-value=3.4e-10  Score=65.27  Aligned_cols=66  Identities=24%  Similarity=0.287  Sum_probs=57.2

Q ss_pred             HHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC-------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           57 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-------PLNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        57 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      ....++.++|.++..+|+|++|+.++++++.+.       |..+.++.++|.++...|++++|+.++++++.+
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            346779999999999999999999999999662       233778999999999999999999999999865

...

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=7.2e-10  Score=81.99  Aligned_cols=118  Identities=16%  Similarity=0.137  Sum_probs=102.5

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      .+...|+..|..|+++.|...|..++.-+.+.               ..+++|+|.++-.+|+.++|+.+|-+.-.+--+
T Consensus       492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---------------~ealfniglt~e~~~~ldeald~f~klh~il~n  556 (840)
T KOG2003|consen  492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASC---------------TEALFNIGLTAEALGNLDEALDCFLKLHAILLN  556 (840)
T ss_pred             HhhcCCceeeecCcHHHHHHHHHHHHcCchHH---------------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh
Confidence            45668999999999999999999999764433               445899999999999999999999887776677


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  144 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  144 (159)
                      +..+++.++.+|..+.+-..|++++.++.++.|++|.+..-++.+..+-+.+.
T Consensus       557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdks  609 (840)
T KOG2003|consen  557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS  609 (840)
T ss_pred             hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence            89999999999999999999999999999999999999999998886655543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.10  E-value=1.4e-09  Score=62.73  Aligned_cols=74  Identities=23%  Similarity=0.238  Sum_probs=61.2

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..+..+...|.+++..|+|++|+.+|++++.+....++.        .+....++.++|.++..+|++++|+.++++++.
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            467889999999999999999999999999984333221        133477899999999999999999999999987


Q ss_pred             cC
Q 031461           88 LE   89 (159)
Q Consensus        88 ~~   89 (159)
                      +.
T Consensus        75 i~   76 (78)
T PF13424_consen   75 IF   76 (78)
T ss_dssp             HH
T ss_pred             hh
Confidence            63

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.07  E-value=1.5e-09  Score=61.72  Aligned_cols=70  Identities=23%  Similarity=0.308  Sum_probs=62.4

Q ss_pred             hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHH
Q 031461           17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL   96 (159)
Q Consensus        17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   96 (159)
                      ...+++.++|+.|+..+..++.+.|.++..               +..+|.++..+|++++|..++++++...|+++.+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPEL---------------WLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchh---------------hHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            467899999999999999999998886543               89999999999999999999999999999998876


Q ss_pred             HHHHH
Q 031461           97 YRRSQ  101 (159)
Q Consensus        97 ~~~~~  101 (159)
                      ..++.
T Consensus        67 ~~~a~   71 (73)
T PF13371_consen   67 ALRAM   71 (73)
T ss_pred             HHHHh
Confidence            65543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=1.1e-08  Score=72.57  Aligned_cols=89  Identities=20%  Similarity=0.171  Sum_probs=79.9

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-RVVKLVYMELK  137 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~  137 (159)
                      ...|+.+|..+....+++.|...+.+|++-+|.+..+-+.+|.+....|+|+.|++.++++++.+|+- +.+...+..|+
T Consensus       180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y  259 (389)
T COG2956         180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY  259 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            45688888888889999999999999999999999999999999999999999999999999999986 67888888888


Q ss_pred             HHHHHHHHHH
Q 031461          138 DKQREYAKYQ  147 (159)
Q Consensus       138 ~~~~~~~~~~  147 (159)
                      ..+++..+-.
T Consensus       260 ~~lg~~~~~~  269 (389)
T COG2956         260 AQLGKPAEGL  269 (389)
T ss_pred             HHhCCHHHHH
Confidence            8887765544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.07  E-value=6.6e-09  Score=64.25  Aligned_cols=86  Identities=17%  Similarity=0.138  Sum_probs=75.1

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc---HHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYM  134 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~  134 (159)
                      .++.+|..+...|++++|...+..++..+|++   +.+++.+|.++...|+++.|+..|+.++...|++   +.+...++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            47899999999999999999999999999876   6789999999999999999999999999999886   56677777


Q ss_pred             HHHHHHHHHHHH
Q 031461          135 ELKDKQREYAKY  146 (159)
Q Consensus       135 ~~~~~~~~~~~~  146 (159)
                      .+...+++..+.
T Consensus        84 ~~~~~~~~~~~A   95 (119)
T TIGR02795        84 MSLQELGDKEKA   95 (119)
T ss_pred             HHHHHhCChHHH
Confidence            777666655444

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.07  E-value=1.2e-08  Score=80.64  Aligned_cols=124  Identities=10%  Similarity=0.004  Sum_probs=105.8

Q ss_pred             HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHH
Q 031461           19 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYR   98 (159)
Q Consensus        19 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~   98 (159)
                      +.-..+....+.+-.-.++.+....+..            ..++.++|.+....|.+++|+..++.++++.|++..+...
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~  125 (694)
T PRK15179         58 VLERHAAVHKPAAALPELLDYVRRYPHT------------ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFIL  125 (694)
T ss_pred             HHHHhhhhcchHhhHHHHHHHHHhcccc------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3344555555666666666665555443            5669999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461           99 RSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus        99 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                      ++.++.+.+.+++|+..+++++..+|++..++..++.+..+++++.+... .|.++.
T Consensus       126 ~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~-~y~~~~  181 (694)
T PRK15179        126 MLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADA-CFERLS  181 (694)
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHH-HHHHHH
Confidence            99999999999999999999999999999999999999999999988765 676654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.06  E-value=2.2e-09  Score=70.91  Aligned_cols=111  Identities=14%  Similarity=0.013  Sum_probs=87.6

Q ss_pred             hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HH
Q 031461           18 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VK   94 (159)
Q Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~   94 (159)
                      +.+|-.+.|..+...+...+...+.             .....+++++|.++..+|++++|+..+.+++.+.|++   +.
T Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~   73 (168)
T CHL00033          7 NDNFIDKTFTIVADILLRILPTTSG-------------EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSY   73 (168)
T ss_pred             cccccccccccchhhhhHhccCCch-------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHH
Confidence            3445555566666666444433222             1235668999999999999999999999999887653   46


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      +++++|.++...|++++|+..|++++.+.|.+...+..++.+...++
T Consensus        74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999999888888888877443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.06  E-value=5.6e-10  Score=79.38  Aligned_cols=136  Identities=11%  Similarity=0.032  Sum_probs=102.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC------------hHH-------HHHHHHHHHHHHhhHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDE-------KHQANGLRLSCYLNNAACKL   70 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------------~~~-------~~~~~~~~~~~~~~~a~~~~   70 (159)
                      +..+...+.++-..+++++|+++|+.+++..+.+.+.-            ++.       ..+.-.....+++|+|.|++
T Consensus       290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~  369 (478)
T KOG1129|consen  290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL  369 (478)
T ss_pred             hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence            34455666777777777777777777777765432110            000       01111222346999999999


Q ss_pred             hhhCHHHHHHHHHHHhhcCC---ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           71 KLEDYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        71 ~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      --++++-++..|++++....   .-++.||++|.+....||+.-|..+|+-++..+|++.++...++.+..+.+....
T Consensus       370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~  447 (478)
T KOG1129|consen  370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG  447 (478)
T ss_pred             hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH
Confidence            99999999999999998653   3488999999999999999999999999999999999999999998877665543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.05  E-value=1.2e-08  Score=80.97  Aligned_cols=123  Identities=18%  Similarity=0.124  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      +...++.++..|..+..+|+|+.|..+|.+++..++++...              .++.+|+.++..|+++.|..+|+++
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l--------------~~~GlgQm~i~~~dle~s~~~fEkv  368 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL--------------PLVGLGQMYIKRGDLEESKFCFEKV  368 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc--------------cccchhHHHHHhchHHHHHHHHHHH
Confidence            45678889999999999999999999999999998776332              2889999999999999999999999


Q ss_pred             hhcCCccHHHHHHHHHHHHhhC----CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           86 LELEPLNVKALYRRSQAHLKTS----ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      +...|++.....-+|.+|...+    .-+.|.....+++...|.|..++-.++.+.....-
T Consensus       369 ~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~  429 (1018)
T KOG2002|consen  369 LKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP  429 (1018)
T ss_pred             HHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh
Confidence            9999999999999999999886    77889999999999999999999998888755433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.05  E-value=4.2e-08  Score=63.28  Aligned_cols=98  Identities=19%  Similarity=0.141  Sum_probs=82.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ....+..|..++..|++++|+..|..++...+..            .+...+.+.+|.+++..|+|++|+..++. +.-.
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~------------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~  114 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP------------ELKPLARLRLARILLQQGQYDEALATLQQ-IPDE  114 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCc
Confidence            4556778999999999999999999999865322            33456788999999999999999999966 3444


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      +-.+.++..+|+++...|++++|+..|++++
T Consensus       115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            5567788899999999999999999999875

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=1.2e-08  Score=76.93  Aligned_cols=142  Identities=11%  Similarity=0.015  Sum_probs=111.7

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------------------------------C----
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH-------------------------------------S----   45 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------------------------~----   45 (159)
                      ...++...-+|.+....++=..||..+.+|++++|++.                                     .    
T Consensus       316 P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~  395 (579)
T KOG1125|consen  316 PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGEN  395 (579)
T ss_pred             hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcc
Confidence            34577777888888888888888888888888777630                                     0    


Q ss_pred             ---------CChHHHHHHHH------------HHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 031461           46 ---------FTDDEKHQANG------------LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHL  104 (159)
Q Consensus        46 ---------~~~~~~~~~~~------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  104 (159)
                               .+.....++..            ....+...||..|...|+|++|+.||+.||..+|.+...|.++|-.+.
T Consensus       396 ~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA  475 (579)
T KOG1125|consen  396 EDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA  475 (579)
T ss_pred             ccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence                     00011111111            234467889999999999999999999999999999999999999999


Q ss_pred             hhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 031461          105 KTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA  148 (159)
Q Consensus       105 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~  148 (159)
                      .-.+..+|+..|.+|+++.|.-..++..++..-..++-+++.-+
T Consensus       476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK  519 (579)
T ss_pred             CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence            99999999999999999999988888888887777777766543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=7.4e-09  Score=77.95  Aligned_cols=120  Identities=18%  Similarity=0.097  Sum_probs=102.5

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC----
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE----   89 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----   89 (159)
                      +-.|..+...+++..|-.+|..|+.+.|.+|-.               +..+|.+.+..+.|.+|..+|+.++..-    
T Consensus       384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv---------------~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~  448 (611)
T KOG1173|consen  384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV---------------LHELGVVAYTYEEYPEALKYFQKALEVIKSVL  448 (611)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh---------------hhhhhheeehHhhhHHHHHHHHHHHHHhhhcc
Confidence            346777888888888888888888888887644               8899999999999999999999998321    


Q ss_pred             ---CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 031461           90 ---PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA  148 (159)
Q Consensus        90 ---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~  148 (159)
                         +.|...+.++|-++.+++.+.+|+..|++++.+.|.+++++..++-|.-.++.......
T Consensus       449 ~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid  510 (611)
T KOG1173|consen  449 NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID  510 (611)
T ss_pred             ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence               34677799999999999999999999999999999999999999999888777666544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.03  E-value=4.8e-09  Score=74.76  Aligned_cols=120  Identities=19%  Similarity=0.177  Sum_probs=83.0

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV   93 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~   93 (159)
                      ......+...++++.+...+..+....+ .+.            ...++..+|.++...|++++|+.+++++++++|+++
T Consensus       114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~  180 (280)
T PF13429_consen  114 LSALQLYYRLGDYDEAEELLEKLEELPA-APD------------SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP  180 (280)
T ss_dssp             ----H-HHHTT-HHHHHHHHHHHHH-T----T-------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhccC-CCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            3344556666777777777666554221 111            144577888888899999999999999999999888


Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           94 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      .+...++.++...|+++++...+.......|.++..+..++.+...+++.++.
T Consensus       181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A  233 (280)
T PF13429_consen  181 DARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA  233 (280)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence            88888888888889998888888888877788888888888888777766544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.01  E-value=9e-09  Score=68.31  Aligned_cols=85  Identities=19%  Similarity=0.168  Sum_probs=75.5

Q ss_pred             HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           58 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      ...+++++|.++...|++++|+.++++++...|+.   ..+++.+|.++...|++++|+..+.+++...|.+......++
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            35568999999999999999999999999887653   578999999999999999999999999999999998888888


Q ss_pred             HHHHHHHH
Q 031461          135 ELKDKQRE  142 (159)
Q Consensus       135 ~~~~~~~~  142 (159)
                      .+...+++
T Consensus       114 ~~~~~~g~  121 (172)
T PRK02603        114 VIYHKRGE  121 (172)
T ss_pred             HHHHHcCC
Confidence            87766544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.98  E-value=4e-09  Score=78.19  Aligned_cols=68  Identities=19%  Similarity=0.114  Sum_probs=62.8

Q ss_pred             HHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHH---HHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461           56 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA---LYRRSQAHLKTSELEKAEADIKRALTID  123 (159)
Q Consensus        56 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~~~  123 (159)
                      +-....++|+|.++..+|+|++|+..|+++|.++|++..+   |+++|.+|..+|++++|+.++++++.+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            3346679999999999999999999999999999999855   9999999999999999999999999973

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=1.4e-07  Score=64.99  Aligned_cols=136  Identities=18%  Similarity=0.134  Sum_probs=101.5

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------H------HHHHHHHHHHHHHhhHHHHHhhhhCH
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------D------EKHQANGLRLSCYLNNAACKLKLEDY   75 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------~------~~~~~~~~~~~~~~~~a~~~~~~~~~   75 (159)
                      -.|..+-..|+|++|+++|...+.-+|.+.....             +      ...+.-.....+|..++..|+..|+|
T Consensus        91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f  170 (289)
T KOG3060|consen   91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF  170 (289)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence            3466666789999999999998887665422110             0      11112222345688889999999999


Q ss_pred             HHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           76 SETSSLCTKVLELEPLNVKALYRRSQAHLKTS---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEI  150 (159)
Q Consensus        76 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (159)
                      ++|.-|+++.+-+.|.++-.+.++|++++-.|   ++.-|.++|.+++++.|.+..++..+-.+-..+.+..+.+-+.
T Consensus       171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~~k~  248 (289)
T KOG3060|consen  171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAELKR  248 (289)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHHHhh
Confidence            99999999999999999999999999888777   5566889999999999988888888888887777666655433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=6.1e-08  Score=66.75  Aligned_cols=88  Identities=17%  Similarity=0.194  Sum_probs=62.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh---CHHHHHHHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTKVL   86 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al   86 (159)
                      .+...+.+..|+..|+|..|+-+|+.++-+.|.+|               .++..+|.+++-+|   ++.-|..+|.+++
T Consensus       154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~---------------l~f~rlae~~Yt~gg~eN~~~arkyy~~al  218 (289)
T KOG3060|consen  154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP---------------LYFQRLAEVLYTQGGAENLELARKYYERAL  218 (289)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            45677778888888888888888888877766553               23567777766655   5677778888888


Q ss_pred             hcCCccHHHHHHHHHHHHhhCCHHHH
Q 031461           87 ELEPLNVKALYRRSQAHLKTSELEKA  112 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~A  112 (159)
                      +++|.+..+++.+..|-...-+...+
T Consensus       219 kl~~~~~ral~GI~lc~~~la~~sk~  244 (289)
T KOG3060|consen  219 KLNPKNLRALFGIYLCGSALAQISKA  244 (289)
T ss_pred             HhChHhHHHHHHHHHHHHHHHHHhHH
Confidence            88887777777777766555444433

>TIGR00540 hemY_coli hemY protein

Probab=98.96  E-value=7.9e-08  Score=72.14  Aligned_cols=125  Identities=17%  Similarity=0.173  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      +...+......|...+..|+|..|.+...++.+..|..               ...+...|.+...+|+++.|..++.++
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~---------------~~~~llaA~aa~~~g~~~~A~~~l~~a  144 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP---------------VLNLIKAAEAAQQRGDEARANQHLEEA  144 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34467778888999999999999999999888775542               223556677778888888888888888


Q ss_pred             hhcCCccH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           86 LELEPLNV-KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        86 l~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      .+..|++. .+....+.++...|+++.|...+++.+...|+++.+...+..+....++..+
T Consensus       145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~  205 (409)
T TIGR00540       145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQA  205 (409)
T ss_pred             HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence            87777764 4555568888888888888888888888888888887777777766666543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.95  E-value=3.7e-09  Score=61.83  Aligned_cols=76  Identities=24%  Similarity=0.358  Sum_probs=66.9

Q ss_pred             hhCHHHHHHHHHHHhhcCCc--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 031461           72 LEDYSETSSLCTKVLELEPL--NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA  148 (159)
Q Consensus        72 ~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~  148 (159)
                      .|+|+.|+..+++++..+|.  +...++.+|.||+..|+|++|+..+++ ...+|.+..+...++.+...+++.++...
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            68999999999999999995  577788899999999999999999999 88899998999999999999999877643

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.94  E-value=2.6e-08  Score=74.00  Aligned_cols=107  Identities=18%  Similarity=0.081  Sum_probs=89.6

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK   94 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~   94 (159)
                      -.|.+++..++..+|++.+.+++.+.|..+               .+..++|.++++.|++.+|+..++..+.-+|+++.
T Consensus       345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~---------------~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~  409 (484)
T COG4783         345 LAGDILLEANKAKEAIERLKKALALDPNSP---------------LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN  409 (484)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCcc---------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence            457889999999999999999999988763               44889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      .|..+|++|..+|+..+|...+-....+..+-..+...+...
T Consensus       410 ~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A  451 (484)
T COG4783         410 GWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA  451 (484)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            999999999999877777777776666665544444444433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.92  E-value=3.8e-08  Score=67.84  Aligned_cols=85  Identities=14%  Similarity=0.139  Sum_probs=77.1

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      ....|...+..|+|..|+..+.++..++|+++++|.-+|.+|-+.|+++.|...|.+++++.|+++.+...++.....-+
T Consensus       103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g  182 (257)
T COG5010         103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG  182 (257)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence            44588899999999999999999999999999999999999999999999999999999999999999998888776655


Q ss_pred             HHHHH
Q 031461          142 EYAKY  146 (159)
Q Consensus       142 ~~~~~  146 (159)
                      +....
T Consensus       183 d~~~A  187 (257)
T COG5010         183 DLEDA  187 (257)
T ss_pred             CHHHH
Confidence            55443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.90  E-value=1.2e-08  Score=78.79  Aligned_cols=117  Identities=20%  Similarity=0.238  Sum_probs=88.2

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK   94 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~   94 (159)
                      ..|...+++++|.++.++++..+++.|-.               ...|+++|.|..+++++..|..+|.+.+.++|++..
T Consensus       490 ~~~~~~~~~~~fs~~~~hle~sl~~nplq---------------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e  554 (777)
T KOG1128|consen  490 SLALLILSNKDFSEADKHLERSLEINPLQ---------------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE  554 (777)
T ss_pred             hhccccccchhHHHHHHHHHHHhhcCccc---------------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh
Confidence            33444556677777777777777775543               344888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +|.+++-+|...++-.+|...+.+|++.+-.+..++....-+-...+..++.
T Consensus       555 aWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda  606 (777)
T KOG1128|consen  555 AWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA  606 (777)
T ss_pred             hhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence            8888888888888888888888888888877777777666666666555443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.90  E-value=9.7e-08  Score=73.19  Aligned_cols=87  Identities=16%  Similarity=0.153  Sum_probs=74.9

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ..+++.+|.+|-..|++++|+.+++++|.+.|+.++.++..|.++.+.|++.+|..++..|..+++.|--+..-..+-.-
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999998666655555544


Q ss_pred             HHHHHHH
Q 031461          139 KQREYAK  145 (159)
Q Consensus       139 ~~~~~~~  145 (159)
                      +-++.++
T Consensus       274 Ra~~~e~  280 (517)
T PF12569_consen  274 RAGRIEE  280 (517)
T ss_pred             HCCCHHH
Confidence            4444433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.89  E-value=1.3e-07  Score=74.66  Aligned_cols=100  Identities=19%  Similarity=0.198  Sum_probs=93.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ...+..+|.++-++|+.+++..++..|-.+.|.+++               .|..++....++|.+..|.-||.+||+.+
T Consensus       173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---------------~W~~ladls~~~~~i~qA~~cy~rAI~~~  237 (895)
T KOG2076|consen  173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---------------LWKRLADLSEQLGNINQARYCYSRAIQAN  237 (895)
T ss_pred             hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH---------------HHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            345788999999999999999999999999887753               38889999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP  124 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  124 (159)
                      |.+.+..++++.+|.+.|++..|...|.+++.+.|
T Consensus       238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.88  E-value=1.4e-07  Score=75.97  Aligned_cols=114  Identities=14%  Similarity=0.020  Sum_probs=89.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      .+........+...+++++|+.....+++..|+....               |+.+|..+...+++.++...  .++.+-
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~---------------yy~~G~l~~q~~~~~~~~lv--~~l~~~   93 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA---------------LYISGILSLSRRPLNDSNLL--NLIDSF   93 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh---------------HHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence            3455667778889999999999999999998876443               66777777777766666555  555554


Q ss_pred             CccH-------------------HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           90 PLNV-------------------KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        90 ~~~~-------------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      +.+.                   .+++.+|.||-.+|++++|...|++++.++|+|+.+...++-.....
T Consensus        94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~  163 (906)
T PRK14720         94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE  163 (906)
T ss_pred             ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence            4444                   88999999999999999999999999999999999888888877666

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.88  E-value=2.1e-07  Score=70.96  Aligned_cols=109  Identities=21%  Similarity=0.180  Sum_probs=91.0

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      .-+..+..+|..+++.|+|.+|..++..|+++........       .+-....+.+++..+..++++++|..+++++++
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-------HPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            4567788999999999999999999999999976522221       122456688999999999999999999999987


Q ss_pred             cC--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461           88 LE--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTID  123 (159)
Q Consensus        88 ~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  123 (159)
                      +-        |.-+..+.++|.+|+..|+|++|...|++|+...
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            63        2347888999999999999999999999998774

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.88  E-value=2.2e-07  Score=71.49  Aligned_cols=118  Identities=13%  Similarity=0.009  Sum_probs=90.8

Q ss_pred             HHHHHHhhhHHHHccc---HHHHHHHHHHHHHHhcccCC--------------CC---hHHHHHH------------HHH
Q 031461           10 CERKKHDGNLLFRAGK---YWRASKKYEKAAKIIEFHHS--------------FT---DDEKHQA------------NGL   57 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~~~~~~--------------~~---~~~~~~~------------~~~   57 (159)
                      +-.+.-+|..++..+.   +..|+.+|.++++++|+...              ..   .......            .+.
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~  418 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV  418 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence            4456667777766544   88999999999999887311              00   1111010            111


Q ss_pred             HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461           58 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  128 (159)
Q Consensus        58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  128 (159)
                      ...++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|+..|++|+.++|.++.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            124566778888889999999999999999999 5789999999999999999999999999999999875

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.88  E-value=4.5e-08  Score=78.78  Aligned_cols=113  Identities=11%  Similarity=-0.008  Sum_probs=94.6

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      .+...|..+...|+|+.|++.|+++++..|.++.               ++..++..+...+++++|+..+++++..+|.
T Consensus       104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~---------------~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~  168 (822)
T PRK14574        104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPD---------------LISGMIMTQADAGRGGVVLKQATELAERDPT  168 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------------HHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence            3444577888999999999999999999888743               3567789999999999999999999999998


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      +... ..++.++...++..+|+..+++++..+|++..+...+-.+....
T Consensus       169 ~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~  216 (822)
T PRK14574        169 VQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN  216 (822)
T ss_pred             hHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            6554 66677777788888899999999999999998877776665443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.88  E-value=3.9e-08  Score=72.16  Aligned_cols=98  Identities=13%  Similarity=-0.027  Sum_probs=82.2

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      .....|..+...|++++|+..+++++...|.++               .++..+|.++...|++++|+.++++++...|.
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~---------------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDA---------------WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---------------HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            445677888999999999999999999977763               33788999999999999999999999998764


Q ss_pred             cH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461           92 NV----KALYRRSQAHLKTSELEKAEADIKRALTIDP  124 (159)
Q Consensus        92 ~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  124 (159)
                      .+    ..+..+|.++...|++++|+..|.+++...|
T Consensus       181 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         181 SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            32    3466799999999999999999999887666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.88  E-value=7.3e-08  Score=68.89  Aligned_cols=137  Identities=22%  Similarity=0.242  Sum_probs=97.2

Q ss_pred             HHHHHHHHhhhHHHHc-ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            8 EACERKKHDGNLLFRA-GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ..+..+...|..+... |+++.|+.+|.+|+++.......         .....++.++|.++..+|+|++|+..|+++.
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~---------~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP---------HSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3577788889999888 99999999999999997654422         2345678899999999999999999999998


Q ss_pred             hcCCc------cH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           87 ELEPL------NV-KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus        87 ~~~~~------~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      ...-.      +. ..++..+.|+...||.-.|...+++....+|.-... ....-+...+...+..+...|...
T Consensus       183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s-~E~~~~~~l~~A~~~~D~e~f~~a  256 (282)
T PF14938_consen  183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS-REYKFLEDLLEAYEEGDVEAFTEA  256 (282)
T ss_dssp             HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS-HHHHHHHHHHHHHHTT-CCCHHHH
T ss_pred             HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHhCCHHHHHHH
Confidence            75321      22 456788889999999999999999999999854332 222233344455555554444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.8e-07  Score=65.89  Aligned_cols=115  Identities=18%  Similarity=0.082  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHh
Q 031461           26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK  105 (159)
Q Consensus        26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  105 (159)
                      .+..+.-.+..+..+|++...               |..+|.+|+.+|++..|...|.+++++.|+++..+..+|.+++.
T Consensus       138 ~~~l~a~Le~~L~~nP~d~eg---------------W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~  202 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEG---------------WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY  202 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchh---------------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            455556666666666666543               99999999999999999999999999999999999999999876


Q ss_pred             hC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461          106 TS---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus       106 ~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (159)
                      ..   ...++...+.+++.++|+|..+...++......+++.+.-. .+..|..
T Consensus       203 ~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~-~Wq~lL~  255 (287)
T COG4235         203 QAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA-AWQMLLD  255 (287)
T ss_pred             hcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH-HHHHHHh
Confidence            64   56678999999999999999999999998888777765532 4444443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.87  E-value=2.2e-07  Score=69.56  Aligned_cols=125  Identities=15%  Similarity=0.165  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      +...+......|...+..|+|+.|.+...++-+.    .+.+           ...+...+......|+++.|..++.++
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~p-----------~l~~llaA~aA~~~g~~~~A~~~l~~A  144 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQP-----------VVNYLLAAEAAQQRGDEARANQHLERA  144 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccch-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3346677788888888899999888666554332    1110           122444566668888888888888888


Q ss_pred             hhcCCccHHH-HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           86 LELEPLNVKA-LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        86 l~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      .+.+|++..+ ....+.++...|+++.|...+++....+|+++.+...+..+....++-.+
T Consensus       145 ~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        145 AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence            8888877433 34458888888888888888888888888888888888777766655443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.86  E-value=3.5e-07  Score=55.99  Aligned_cols=113  Identities=18%  Similarity=0.208  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      +..+-.....|...+..|-|++|...|+++++.....|   +++..+...+..-++..++..+..+|+|++++.....++
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP---~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL   82 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIP---AEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL   82 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS----TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC---hHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34455566778888899999999999999999955444   355566677778888999999999999999999888888


Q ss_pred             hc-------CC----ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           87 EL-------EP----LNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        87 ~~-------~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      ..       +.    .|+.+.++++.++..+|+.++|+..|+.+-.+
T Consensus        83 ~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   83 RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            53       32    36889999999999999999999999987543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>TIGR00540 hemY_coli hemY protein

Probab=98.85  E-value=2e-07  Score=69.97  Aligned_cols=130  Identities=15%  Similarity=-0.017  Sum_probs=101.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      ........|..+...|+++.|+....++++..|++....             ...-........++.+.++..++++++.
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~-------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS-------------LPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-------------hHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            355667788899999999999999999999987764320             0122223334467889999999999999


Q ss_pred             CCccH--HHHHHHHHHHHhhCCHHHHHHHHH--HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           89 EPLNV--KALYRRSQAHLKTSELEKAEADIK--RALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGT  153 (159)
Q Consensus        89 ~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (159)
                      .|+++  ..+..+|.+++..|++++|.++|+  .++...|++.. ...++.+...+++.++. ...|++
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A-~~~~~~  395 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA-AAMRQD  395 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHHH
Confidence            99999  888899999999999999999999  57788897766 44888888888776554 334444

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.85  E-value=9.7e-08  Score=62.68  Aligned_cols=107  Identities=21%  Similarity=0.120  Sum_probs=75.5

Q ss_pred             cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHh---hhhCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 031461           25 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL---KLEDYSETSSLCTKVLELEPLNVKALYRRSQ  101 (159)
Q Consensus        25 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  101 (159)
                      -|+.|.+.++.....+|.+++.        .--+.-++..++....   ....+++|+.-++++|.++|+...+++.+|.
T Consensus         6 ~FE~ark~aea~y~~nP~Dadn--------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn   77 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADN--------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHH--------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHH--------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            3677888888888877765332        1222334445554422   3356889999999999999999999999999


Q ss_pred             HHHhhC-----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461          102 AHLKTS-----------ELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus       102 ~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      +|..++           -|++|..+|++|...+|+|...+..+....+.
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka  126 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA  126 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence            999887           38889999999999999998887777766543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.84  E-value=7.7e-07  Score=60.64  Aligned_cols=123  Identities=11%  Similarity=-0.007  Sum_probs=91.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh-----------hCHHHH
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-----------EDYSET   78 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A   78 (159)
                      .+.....|..++..|+|..|+..|...+...|.++..            ..+++.+|.++..+           +...+|
T Consensus        42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A  109 (203)
T PF13525_consen   42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKA  109 (203)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence            4567788999999999999999999999999987754            44567777776554           345689


Q ss_pred             HHHHHHHhhcCCccHHH-----------------HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHH
Q 031461           79 SSLCTKVLELEPLNVKA-----------------LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV---KLVYMELKD  138 (159)
Q Consensus        79 ~~~~~~al~~~~~~~~~-----------------~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~  138 (159)
                      ...++..+...|++..+                 -+..|..|...|.|..|+..++.++...|+.+..   ...+.....
T Consensus       110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~  189 (203)
T PF13525_consen  110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYY  189 (203)
T ss_dssp             HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence            99999999999987332                 3458999999999999999999999999998654   444444555


Q ss_pred             HHHHHH
Q 031461          139 KQREYA  144 (159)
Q Consensus       139 ~~~~~~  144 (159)
                      .++...
T Consensus       190 ~l~~~~  195 (203)
T PF13525_consen  190 KLGLKQ  195 (203)
T ss_dssp             HTT-HH
T ss_pred             HhCChH
Confidence            555544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=2e-07  Score=68.46  Aligned_cols=138  Identities=14%  Similarity=0.121  Sum_probs=109.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChH---------HHHH----------HHHHHHHHHhhHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD---------EKHQ----------ANGLRLSCYLNNAACKL   70 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~---------~~~~----------~~~~~~~~~~~~a~~~~   70 (159)
                      +..+...|.+++..|++.+|+..|+++.-++|.....-+.         ...+          .......-|..-+....
T Consensus       232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~  311 (564)
T KOG1174|consen  232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY  311 (564)
T ss_pred             HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence            4557788999999999999999999999988764322210         0111          11112223555566677


Q ss_pred             hhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 031461           71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ  147 (159)
Q Consensus        71 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  147 (159)
                      ..++|..|+.+.+++|+.+|.+..+++..|.++...|+.++|+-.|+.|..+.|-+-.+...+-.+.-..++.++..
T Consensus       312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~  388 (564)
T KOG1174|consen  312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN  388 (564)
T ss_pred             hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999888888888877666665543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.82  E-value=3e-08  Score=70.77  Aligned_cols=108  Identities=12%  Similarity=0.051  Sum_probs=95.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      .+.+...|..++..++++.++..|.+++.........            ..+|+|+|.+....|++--|..+|+-++..+
T Consensus       358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d  425 (478)
T KOG1129|consen  358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSD  425 (478)
T ss_pred             hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh------------hhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence            4567778888999999999999999999886654332            6779999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV  129 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  129 (159)
                      |++..++.++|.+-.+.|+.+.|...+..+-...|+-.+.
T Consensus       426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~  465 (478)
T KOG1129|consen  426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV  465 (478)
T ss_pred             cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence            9999999999999999999999999999999999875443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.82  E-value=8.5e-08  Score=62.25  Aligned_cols=95  Identities=13%  Similarity=-0.011  Sum_probs=84.6

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ....+..|.-+...|++++|...|.-+...+|.+++.++.+|-|+..+++|++|+..|-.+..++++|+......+.|.-
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l  116 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL  116 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence            44577888889999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHH
Q 031461          139 KQREYAKYQAEIFGTM  154 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (159)
                      .+++...... -|..+
T Consensus       117 ~l~~~~~A~~-~f~~a  131 (165)
T PRK15331        117 LMRKAAKARQ-CFELV  131 (165)
T ss_pred             HhCCHHHHHH-HHHHH
Confidence            8887766543 44433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.81  E-value=1.4e-06  Score=60.31  Aligned_cols=125  Identities=18%  Similarity=0.139  Sum_probs=99.9

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      -+..+.+.|...++.|+|++|+..|+.+....|..+-.            ..+...++.++.+.+++++|+..+++-+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------------EQAQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            46778999999999999999999999999887766543            456788999999999999999999999999


Q ss_pred             CCcc---HHHHHHHHHHHHhhC--------CHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHHHHH
Q 031461           89 EPLN---VKALYRRSQAHLKTS--------ELEKAEADIKRALTIDPNN---RVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        89 ~~~~---~~~~~~~~~~~~~~~--------~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~  145 (159)
                      .|++   ..++|.+|.+++..-        -...|+..|+..+...|+.   +.+...+..+..++...+-
T Consensus       101 yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em  171 (254)
T COG4105         101 YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM  171 (254)
T ss_pred             CCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            9877   557788888876553        3456888899999999987   4455555555555555433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.81  E-value=1.5e-07  Score=66.45  Aligned_cols=95  Identities=11%  Similarity=0.069  Sum_probs=74.5

Q ss_pred             HHHhhHHHHH-hhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc---HHHHHH
Q 031461           60 SCYLNNAACK-LKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLV  132 (159)
Q Consensus        60 ~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~  132 (159)
                      ...+..|... +..|+|++|+..|+..+...|++   +.+++.+|.+|+..|++++|+..|.+++...|++   +.++..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3456666665 56799999999999999999988   6899999999999999999999999999999986   555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 031461          133 YMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                      ++.+...+++..+. ...|.++.
T Consensus       223 lg~~~~~~g~~~~A-~~~~~~vi  244 (263)
T PRK10803        223 VGVIMQDKGDTAKA-KAVYQQVI  244 (263)
T ss_pred             HHHHHHHcCCHHHH-HHHHHHHH
Confidence            66666655554443 33555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.78  E-value=3.5e-06  Score=54.30  Aligned_cols=111  Identities=21%  Similarity=0.170  Sum_probs=86.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-------CChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHH
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS-------FTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT   83 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   83 (159)
                      +.+...|......++...++..+.+++.+.....-       +....-.........+...++..+...|++++|+..++
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            44455677777889999999999999998654321       11133345667777788899999999999999999999


Q ss_pred             HHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461           84 KVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  121 (159)
Q Consensus        84 ~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  121 (159)
                      +++..+|.+..++..+-.+|...|+...|+..|.++..
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988743

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.76  E-value=4e-07  Score=66.80  Aligned_cols=143  Identities=14%  Similarity=-0.001  Sum_probs=107.6

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC-------------Ch--HHHH-------HHHHHHHHHHhhHHHH
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-------------TD--DEKH-------QANGLRLSCYLNNAAC   68 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------~~--~~~~-------~~~~~~~~~~~~~a~~   68 (159)
                      +...-.|..++..|+++.|+..+.+++...|.+...             ..  ....       ...+........+|.+
T Consensus        44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~  123 (355)
T cd05804          44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG  123 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence            445567889999999999999999999987765411             00  0000       0111222345578889


Q ss_pred             HhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHHHHHH
Q 031461           69 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV----VKLVYMELKDKQREYA  144 (159)
Q Consensus        69 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~  144 (159)
                      +...|++++|+..+++++.++|+++.++..+|.+++..|++++|+..+.+++...|.++.    .+..+..+....++..
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~  203 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE  203 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence            999999999999999999999999999999999999999999999999999999875433    3345677777677765


Q ss_pred             HHHHHHHHHH
Q 031461          145 KYQAEIFGTM  154 (159)
Q Consensus       145 ~~~~~~~~~~  154 (159)
                      +... .|...
T Consensus       204 ~A~~-~~~~~  212 (355)
T cd05804         204 AALA-IYDTH  212 (355)
T ss_pred             HHHH-HHHHH
Confidence            5533 44443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.75  E-value=6.8e-08  Score=71.82  Aligned_cols=71  Identities=20%  Similarity=0.230  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ...+..+..+|..++..|+|++|+..|+++|.+.|++...            ..+|+|+|.||..+|++++|+.++++++
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA------------~~A~yNLAcaya~LGr~dEAla~LrrAL  139 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA------------QAAYYNKACCHAYREEGKKAADCLRTAL  139 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3457889999999999999999999999999998876431            2458999999999999999999999999


Q ss_pred             hcC
Q 031461           87 ELE   89 (159)
Q Consensus        87 ~~~   89 (159)
                      .+.
T Consensus       140 els  142 (453)
T PLN03098        140 RDY  142 (453)
T ss_pred             Hhc
Confidence            983

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.75  E-value=3.5e-07  Score=71.29  Aligned_cols=119  Identities=19%  Similarity=0.115  Sum_probs=103.7

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN   92 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~   92 (159)
                      ..-.|..+...+..++|..+..++-.+++..               ..+|+..|.++...|++.+|.+.|..++.++|++
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~---------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h  717 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKIDPLS---------------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH  717 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcchhh---------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence            3445666667778888888887777765543               5679999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCHHHHHH--HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           93 VKALYRRSQAHLKTSELEKAEA--DIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +.....+|.++...|+-.-|..  .+..+++++|.|+++|..++.+.+..+..++.
T Consensus       718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA  773 (799)
T ss_pred             cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence            9999999999999998888888  99999999999999999999999998877643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.75  E-value=2.6e-07  Score=68.54  Aligned_cols=58  Identities=17%  Similarity=0.280  Sum_probs=33.4

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRA  119 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  119 (159)
                      +...|..++..++++.|+..+++++.+.|++..+|+.++.+|..+|++++|+..+..+
T Consensus       237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            4455555555555555655555555555555555555666666666665555555444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.74  E-value=1.1e-06  Score=62.73  Aligned_cols=110  Identities=14%  Similarity=0.064  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      .++++.-+.+.+..+....+.+.|+..+.+|+..+|.....               -.-+|.++...|+|+.|+..++.+
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA---------------si~lG~v~~~~g~y~~AV~~~e~v  240 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA---------------SIILGRVELAKGDYQKAVEALERV  240 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh---------------hhhhhHHHHhccchHHHHHHHHHH
Confidence            56788889999999999999999999999999998876543               567899999999999999999999


Q ss_pred             hhcCCcc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHH
Q 031461           86 LELEPLN-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  130 (159)
Q Consensus        86 l~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  130 (159)
                      ++.+|.. +...-.+..||.++|+.++...++.++....++.....
T Consensus       241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l  286 (389)
T COG2956         241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAEL  286 (389)
T ss_pred             HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHH
Confidence            9999987 67778899999999999999999999999988764433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=2.5e-07  Score=67.57  Aligned_cols=100  Identities=16%  Similarity=0.117  Sum_probs=86.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ...+...+-++.+.+.|..|+...+++|.+.|.+               ..+++.+|.++..+|+|+.|+.+|+++++++
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N---------------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~  321 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNN---------------VKALYRRGQALLALGEYDLARDDFQKALKLE  321 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc---------------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            3447788999999999999999999999998877               4559999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHH-HHHHHHHHhcCC
Q 031461           90 PLNVKALYRRSQAHLKTSELEKA-EADIKRALTIDP  124 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~~p  124 (159)
                      |.|-.+...+..+..+..++.+. .+.|.+.+..-+
T Consensus       322 P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  322 PSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99988888888888777766664 777888776543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.72  E-value=1.7e-07  Score=75.02  Aligned_cols=137  Identities=11%  Similarity=0.077  Sum_probs=109.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh---------HHHHHH------------HHHHHHHHhhHHHH
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD---------DEKHQA------------NGLRLSCYLNNAAC   68 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~------------~~~~~~~~~~~a~~   68 (159)
                      +..+.-.|..|...-+...|..+|.+|.++++.+...-.         .++...            ......-|..+|..
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            455667788887777889999999999999876432111         111111            11122235568889


Q ss_pred             HhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           69 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        69 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      |.+.+++..|+..++.+++.+|.+..+|..+|++|...|++.-|++.|.++..+.|.+.-+..-.+.++...+++++.
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea  649 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA  649 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988888888888777777654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.71  E-value=4.5e-07  Score=63.20  Aligned_cols=94  Identities=15%  Similarity=0.110  Sum_probs=78.6

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYME  135 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~  135 (159)
                      .++.|.-+++.|+|..|..-|..-++..|++   +.++|++|++++..|+|++|...|..+.+-.|.+   ++...-++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6899999999999999999999999999876   8899999999999999999999999999998877   456666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 031461          136 LKDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~  156 (159)
                      +..++++.++. ..++..+.+
T Consensus       224 ~~~~l~~~d~A-~atl~qv~k  243 (262)
T COG1729         224 SLGRLGNTDEA-CATLQQVIK  243 (262)
T ss_pred             HHHHhcCHHHH-HHHHHHHHH
Confidence            76666665444 335555543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.70  E-value=4.3e-07  Score=64.96  Aligned_cols=105  Identities=19%  Similarity=0.150  Sum_probs=75.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh-hCHHHHHHHHHHHhh
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-EDYSETSSLCTKVLE   87 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~   87 (159)
                      .+..+.+.|..+ +..++++|+.+|.+++.+.......         .....++.++|.+|... |++++|+.+|++|+.
T Consensus        74 Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~---------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~  143 (282)
T PF14938_consen   74 AAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRF---------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE  143 (282)
T ss_dssp             HHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-H---------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344455444444 4447777777777777775544332         33356788999999998 999999999999997


Q ss_pred             cCC------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461           88 LEP------LNVKALYRRSQAHLKTSELEKAEADIKRALTID  123 (159)
Q Consensus        88 ~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  123 (159)
                      +..      ....++...|.++..+|+|++|+..|+++....
T Consensus       144 ~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  144 LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            632      126678899999999999999999999997654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.70  E-value=6.8e-07  Score=66.40  Aligned_cols=107  Identities=17%  Similarity=0.094  Sum_probs=96.1

Q ss_pred             HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 031461           22 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ  101 (159)
Q Consensus        22 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  101 (159)
                      ..++++.|+..+++.....|.   .               ...++.++..+++-.+|+..+++++...|.+...+...+.
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe---v---------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~  242 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE---V---------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAE  242 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc---H---------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            457899999999987776433   2               4568899999999999999999999999999999999999


Q ss_pred             HHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461          102 AHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus       102 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      .+...++++.|+...+++..+.|++...+..+..++..+++.++.
T Consensus       243 fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999999999999999999998887664

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.70  E-value=9.4e-07  Score=55.03  Aligned_cols=86  Identities=15%  Similarity=0.060  Sum_probs=72.5

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc---cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC---cHHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPL---NVKALYRRSQAHLKTSELEKAEADIKRALTIDPN---NRVVKLVYM  134 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~  134 (159)
                      +.+++|.++-.+|+.++|+..|++++.....   -..+++.+|.++..+|++++|+..++.++...|+   +..+...+.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            4789999999999999999999999997543   3789999999999999999999999999999898   666666666


Q ss_pred             HHHHHHHHHHHH
Q 031461          135 ELKDKQREYAKY  146 (159)
Q Consensus       135 ~~~~~~~~~~~~  146 (159)
                      .+....++.++.
T Consensus        83 l~L~~~gr~~eA   94 (120)
T PF12688_consen   83 LALYNLGRPKEA   94 (120)
T ss_pred             HHHHHCCCHHHH
Confidence            666655555443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.69  E-value=2.5e-06  Score=59.76  Aligned_cols=116  Identities=8%  Similarity=-0.004  Sum_probs=91.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh----------------
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE----------------   73 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~----------------   73 (159)
                      .......|..+++.++|++|+..|++.++..|+++..            ..+++.+|.++..++                
T Consensus        69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~------------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD  136 (243)
T PRK10866         69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVLYMRGLTNMALDDSALQGFFGVDRSDRD  136 (243)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch------------HHHHHHHHHhhhhcchhhhhhccCCCccccC
Confidence            3446789999999999999999999999999998876            455778887754433                


Q ss_pred             --CHHHHHHHHHHHhhcCCccHH---H--------------HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           74 --DYSETSSLCTKVLELEPLNVK---A--------------LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        74 --~~~~A~~~~~~al~~~~~~~~---~--------------~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                        ...+|+..++..++..|++..   +              -+..|..|.+.|.|..|+.-++.++...|+.+.....+.
T Consensus       137 ~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~  216 (243)
T PRK10866        137 PQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALP  216 (243)
T ss_pred             HHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHH
Confidence              235788999999999998732   2              334788899999999999999999999998865555444


Q ss_pred             HHH
Q 031461          135 ELK  137 (159)
Q Consensus       135 ~~~  137 (159)
                      .+.
T Consensus       217 ~l~  219 (243)
T PRK10866        217 LME  219 (243)
T ss_pred             HHH
Confidence            443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=1.2e-06  Score=65.40  Aligned_cols=132  Identities=13%  Similarity=-0.008  Sum_probs=105.3

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh---------HHHHHH----------HHHHHHHHhhHHHHH
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD---------DEKHQA----------NGLRLSCYLNNAACK   69 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~----------~~~~~~~~~~~a~~~   69 (159)
                      -++.+.+.+++|-...+..+||++|.++..+.|++|..-.         .+..+.          -+-...+.-.+|..|
T Consensus       557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy  636 (840)
T KOG2003|consen  557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY  636 (840)
T ss_pred             hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence            4677888888888888999999999999888887653210         111111          111123455788889


Q ss_pred             hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      +...-+++|+.+++++--+.|+-.+.....+.|+.+.|+|+.|+..|+..-+-.|.|..+...+-++-..+
T Consensus       637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl  707 (840)
T KOG2003|consen  637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL  707 (840)
T ss_pred             HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999988888777765444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.68  E-value=2e-07  Score=70.25  Aligned_cols=120  Identities=21%  Similarity=0.095  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh---hCHHHHHH
Q 031461            4 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL---EDYSETSS   80 (159)
Q Consensus         4 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~   80 (159)
                      -+-...++..+..|+..+..+.+..||..|.+++...|..               ..+|.|+|.++++.   |+...|+.
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------------~~~l~nraa~lmkRkW~~d~~~Alr  432 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------------IYLLENRAAALMKRKWRGDSYLALR  432 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------------hHHHHhHHHHHHhhhccccHHHHHH
Confidence            3455678999999999999999999999999999986653               45688999998885   48889999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      +|..+++++|...+++++++.++..++.+.+|+.+..-+....|.+........-+..
T Consensus       433 Dch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~r  490 (758)
T KOG1310|consen  433 DCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPR  490 (758)
T ss_pred             hHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhcccc
Confidence            9999999999999999999999999999999999988888888877555444444333

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.66  E-value=9.6e-07  Score=66.13  Aligned_cols=124  Identities=12%  Similarity=0.031  Sum_probs=96.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      .......|..+...|+.+.|.....++++. +.++.               +....+.  ...+++++++..++..++..
T Consensus       263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~---------------l~~l~~~--l~~~~~~~al~~~e~~lk~~  324 (398)
T PRK10747        263 VALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDER---------------LVLLIPR--LKTNNPEQLEKVLRQQIKQH  324 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHH---------------HHHHHhh--ccCCChHHHHHHHHHHHhhC
Confidence            445666788899999999999999999883 32221               1122222  34589999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGT  153 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (159)
                      |+++..++.+|.++...+++++|...|++++...|++.. ...+..+....++.++. ...|+.
T Consensus       325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A-~~~~~~  386 (398)
T PRK10747        325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA-AAMRRD  386 (398)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHHH
Confidence            999999999999999999999999999999999998755 44788888877776554 334443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.65  E-value=7.4e-08  Score=46.28  Aligned_cols=32  Identities=31%  Similarity=0.488  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461           94 KALYRRSQAHLKTSELEKAEADIKRALTIDPN  125 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  125 (159)
                      .+|+++|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45556666666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.64  E-value=1.2e-07  Score=48.45  Aligned_cols=40  Identities=23%  Similarity=0.282  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      +++.+|.+|..+|++++|++.|+++++.+|+|+.++..++
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4455555555555555555555555555555555544443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.62  E-value=1.1e-06  Score=68.42  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=74.5

Q ss_pred             hHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           64 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        64 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      .+|......++|.++..+++..++++|-....||.+|.+..++++++.|..+|.+++.++|++..+++.+...+..++++
T Consensus       490 ~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k  569 (777)
T KOG1128|consen  490 SLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK  569 (777)
T ss_pred             hhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh
Confidence            34444566799999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             HH
Q 031461          144 AK  145 (159)
Q Consensus       144 ~~  145 (159)
                      .+
T Consensus       570 ~r  571 (777)
T KOG1128|consen  570 KR  571 (777)
T ss_pred             HH
Confidence            44

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.62  E-value=4e-08  Score=47.24  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=31.2

Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHH
Q 031461           81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAE  113 (159)
Q Consensus        81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~  113 (159)
                      +|+++|+++|+++.+++++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            378999999999999999999999999999986

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.61  E-value=2.3e-07  Score=66.83  Aligned_cols=92  Identities=17%  Similarity=0.156  Sum_probs=80.0

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      .-..|+.|+++|.|++|+.||.+++..+|.++..+.+++.+|+++..|..|..++..|+.++..-..++...+..+..++
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            35679999999999999999999999999999999999999999999999999999999999888888888888887777


Q ss_pred             HHHHHHHHHHHHH
Q 031461          142 EYAKYQAEIFGTM  154 (159)
Q Consensus       142 ~~~~~~~~~~~~~  154 (159)
                      ...+.. +.+.++
T Consensus       180 ~~~EAK-kD~E~v  191 (536)
T KOG4648|consen  180 NNMEAK-KDCETV  191 (536)
T ss_pred             hHHHHH-HhHHHH
Confidence            665543 244443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.59  E-value=1.6e-07  Score=44.98  Aligned_cols=34  Identities=35%  Similarity=0.464  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      +.+++.+|.++..+|++++|+.+|++++.++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567777777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.58  E-value=7.1e-07  Score=47.18  Aligned_cols=49  Identities=31%  Similarity=0.401  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           94 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      +++|.+|..++++|+|++|..+...+++++|+|..+......+..++.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            4688999999999999999999999999999999999888888777654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.57  E-value=1.6e-07  Score=47.89  Aligned_cols=42  Identities=24%  Similarity=0.259  Sum_probs=39.2

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  102 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  102 (159)
                      ++..+|..|..+|++++|+..++++++.+|+++.++..+|.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            478999999999999999999999999999999999998863

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.55  E-value=2.7e-06  Score=65.88  Aligned_cols=106  Identities=14%  Similarity=0.076  Sum_probs=63.3

Q ss_pred             HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461           21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS  100 (159)
Q Consensus        21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (159)
                      ...++.++|+.+++.|++..|.-               ..+|+.+|+++..+++.+.|...|...++..|.++..|+.++
T Consensus       662 r~ld~~eeA~rllEe~lk~fp~f---------------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa  726 (913)
T KOG0495|consen  662 RYLDNVEEALRLLEEALKSFPDF---------------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA  726 (913)
T ss_pred             HHhhhHHHHHHHHHHHHHhCCch---------------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence            34455566666666666554432               344666666666666666666666666666666666666666


Q ss_pred             HHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461          101 QAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus       101 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      .+-...|+.-.|...+.++.--+|.|...+...-++..+.+
T Consensus       727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g  767 (913)
T KOG0495|consen  727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAG  767 (913)
T ss_pred             HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC
Confidence            66666666666666666666666666555444444443333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.54  E-value=1.8e-07  Score=44.92  Aligned_cols=33  Identities=33%  Similarity=0.542  Sum_probs=29.8

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN   92 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~   92 (159)
                      .+|+++|.++..+|++++|+.+|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            458999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK11906 transcriptional regulator; Provisional

Probab=98.54  E-value=1.3e-06  Score=65.19  Aligned_cols=89  Identities=13%  Similarity=0.091  Sum_probs=79.9

Q ss_pred             ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 031461           24 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH  103 (159)
Q Consensus        24 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  103 (159)
                      ..-.+|...-.+++++++.++               .+...+|.+....++++.|...|++++.++|+.+.+++..|.+.
T Consensus       318 ~~~~~a~~~A~rAveld~~Da---------------~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~  382 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDG---------------KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH  382 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence            345678888888888877764               45888999999999999999999999999999999999999999


Q ss_pred             HhhCCHHHHHHHHHHHHhcCCCcH
Q 031461          104 LKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus       104 ~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      ...|+.++|+..++++++++|.-.
T Consensus       383 ~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        383 FHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HHcCCHHHHHHHHHHHhccCchhh
Confidence            999999999999999999999764

>PRK11906 transcriptional regulator; Provisional

Probab=98.52  E-value=4e-06  Score=62.70  Aligned_cols=118  Identities=11%  Similarity=0.069  Sum_probs=92.6

Q ss_pred             HHhhhHHHHcc---cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh---------hCHHHHHHH
Q 031461           14 KHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL---------EDYSETSSL   81 (159)
Q Consensus        14 ~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~   81 (159)
                      .-+|...+.++   ....|+.+|.+|+...+-+|..            ..+|..+|.|+...         ..-.+|...
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~  326 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK------------TECYCLLAECHMSLALHGKSELELAAQKALEL  326 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            44555554444   3567888899999443334443            56688888887664         245688899


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           82 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      ..+++.++|.++.++..+|.++...++++.|...|++++.++|+...++...+-+...-++.
T Consensus       327 A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~  388 (458)
T PRK11906        327 LDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKI  388 (458)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999999888888765544443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.52  E-value=3.5e-06  Score=53.62  Aligned_cols=69  Identities=20%  Similarity=0.195  Sum_probs=63.3

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV  129 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  129 (159)
                      .+++.|...+..|+|.+|+..++.+....|..   ..+.+.+|.+|+..+++++|+..+++.++++|.++.+
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            37889999999999999999999999988754   7899999999999999999999999999999998653

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.51  E-value=2.5e-06  Score=68.98  Aligned_cols=112  Identities=9%  Similarity=-0.020  Sum_probs=92.7

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc--
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL--   88 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--   88 (159)
                      ..++.+|..|-+.|++++|+..|.++++++|.++               .+++++|..+... ++++|+.++.+|+..  
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~---------------~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNP---------------EIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            4678889999999999999999999999987764               4488888888888 888888888888754  


Q ss_pred             ------------------CCccHHH--------------------HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHH
Q 031461           89 ------------------EPLNVKA--------------------LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  130 (159)
Q Consensus        89 ------------------~~~~~~~--------------------~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  130 (159)
                                        +|++...                    +..+-.+|...++|++++..++.++.++|.|..+.
T Consensus       181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~  260 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR  260 (906)
T ss_pred             hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence                              3444333                    22233788889999999999999999999999999


Q ss_pred             HHHHHHHH
Q 031461          131 LVYMELKD  138 (159)
Q Consensus       131 ~~~~~~~~  138 (159)
                      ..+..|..
T Consensus       261 ~~l~~~y~  268 (906)
T PRK14720        261 EELIRFYK  268 (906)
T ss_pred             HHHHHHHH
Confidence            99988886

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.51  E-value=1.7e-06  Score=62.12  Aligned_cols=66  Identities=26%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCH-HHHHHHHHHHHhcCCCcH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL-EKAEADIKRALTIDPNNR  127 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~  127 (159)
                      ++.+|.|++.+|+|++|...+.+++..+|.++.++.+++.+...+|+- +.+.+.+.+....+|+++
T Consensus       204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  204 LNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence            444455555555555555555555555555555555555554444444 223334444444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.47  E-value=4.6e-06  Score=64.65  Aligned_cols=82  Identities=18%  Similarity=0.174  Sum_probs=75.6

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      +|+..+....-++..++|+..++++++..|+..+.|..+|+++.+.++.+.|...|...++.-|+....+..+.++.+..
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~  732 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD  732 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence            56677777788999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             HH
Q 031461          141 RE  142 (159)
Q Consensus       141 ~~  142 (159)
                      +.
T Consensus       733 ~~  734 (913)
T KOG0495|consen  733 GQ  734 (913)
T ss_pred             cc
Confidence            53

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.47  E-value=3.5e-07  Score=67.33  Aligned_cols=111  Identities=15%  Similarity=0.150  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHH
Q 031461            5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK   84 (159)
Q Consensus         5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   84 (159)
                      ++......+..+|+.||-.|+|+.||..-..-+.+...-.+.         .-...++.|+|.||..+|+|+.|.++|..
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr---------AaeRRA~sNlgN~hiflg~fe~A~ehYK~  260 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR---------AAERRAHSNLGNCHIFLGNFELAIEHYKL  260 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH---------HHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence            345566778889999999999999999988888875543221         12245699999999999999999999999


Q ss_pred             Hhhc----CC--ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461           85 VLEL----EP--LNVKALYRRSQAHLKTSELEKAEADIKRALTIDP  124 (159)
Q Consensus        85 al~~----~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  124 (159)
                      ++.+    ..  ..+...|.+|..|.-+.++++|+.++.+-+.+..
T Consensus       261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7654    32  2366789999999999999999999998776644

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.45  E-value=3.1e-05  Score=51.58  Aligned_cols=117  Identities=18%  Similarity=0.281  Sum_probs=94.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +.....+|+...+.|++.+|...|.+++.-.--+ +             ..+++.+++..+..+++..|...++...+.+
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d-------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~  154 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-D-------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN  154 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-C-------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence            3446678999999999999999999998642111 1             4558899999999999999999999999998


Q ss_pred             Cc--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           90 PL--NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        90 ~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      |.  .+...+..|.++...|.+.+|...|+.++...|+- .+.-........++
T Consensus       155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qg  207 (251)
T COG4700         155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQG  207 (251)
T ss_pred             CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhc
Confidence            85  58889999999999999999999999999999964 34444444444443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=5.8e-06  Score=55.52  Aligned_cols=94  Identities=22%  Similarity=0.241  Sum_probs=78.9

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLN-----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      +-.-|.-++..|+|++|..-|..||.+.|..     .-.|.++|-++.+++.++.|+..+.+++.+.|.+..+....+.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            4455777899999999999999999999865     45678899999999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 031461          137 KDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~  156 (159)
                      +..+.++.+. -..|+++..
T Consensus       178 yek~ek~eea-leDyKki~E  196 (271)
T KOG4234|consen  178 YEKMEKYEEA-LEDYKKILE  196 (271)
T ss_pred             HHhhhhHHHH-HHHHHHHHH
Confidence            8888666554 336666543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.44  E-value=5.8e-06  Score=63.71  Aligned_cols=116  Identities=16%  Similarity=0.084  Sum_probs=89.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ++.+-.+|..+...|+-++|..+...++..++.+               ..+|..+|.++...++|++|+.+|..|+.++
T Consensus        41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S---------------~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~  105 (700)
T KOG1156|consen   41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS---------------HVCWHVLGLLQRSDKKYDEAIKCYRNALKIE  105 (700)
T ss_pred             chhHHhccchhhcccchHHHHHHHHHHhccCccc---------------chhHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence            5566677888888888888888888888765443               3568888888888888888888888888888


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      |+|...+.-++..-.+.++++-....-.+.+++.|.+-..+...+..+-.+
T Consensus       106 ~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~  156 (700)
T KOG1156|consen  106 KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL  156 (700)
T ss_pred             CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888887755555444444333

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.42  E-value=1e-06  Score=67.33  Aligned_cols=111  Identities=12%  Similarity=0.085  Sum_probs=97.7

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV   93 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~   93 (159)
                      ...|..+.-.|+...|+++...|+...|.....+              ..++|.+.++.|-.-+|-..+.+++.+....+
T Consensus       611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~--------------~v~la~~~~~~~~~~da~~~l~q~l~~~~sep  676 (886)
T KOG4507|consen  611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP--------------LVNLANLLIHYGLHLDATKLLLQALAINSSEP  676 (886)
T ss_pred             ecccceeeecCCcHHHHHHHHHHhccChhhhccc--------------HHHHHHHHHHhhhhccHHHHHHHHHhhcccCc
Confidence            4456666678999999999999998876544332              77999999999999999999999999998889


Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           94 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      -.++..|.++..+.+.+.|++.|+.|+..+|+++.+..-+..|.-
T Consensus       677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            999999999999999999999999999999999999888877765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.42  E-value=1e-05  Score=58.06  Aligned_cols=111  Identities=18%  Similarity=0.112  Sum_probs=80.3

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh--hh--CHHHHHHHHHHHhhcCCc
Q 031461           16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK--LE--DYSETSSLCTKVLELEPL   91 (159)
Q Consensus        16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~--~~~~A~~~~~~al~~~~~   91 (159)
                      .-.++...++++.|.+.+...-+.+++                 .+..+++..+..  .|  .+.+|...|++.....+.
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD-----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~  199 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQIDED-----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS  199 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHCCSCC-----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence            345667788888888887775554322                 113344443333  34  699999999998888888


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      ++..+..++.++..+|+|++|...+.+++..+|+++.+...+..+...+++.
T Consensus       200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999888777766655554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10941 hypothetical protein; Provisional

Probab=98.42  E-value=7e-06  Score=58.13  Aligned_cols=83  Identities=8%  Similarity=0.061  Sum_probs=74.5

Q ss_pred             HHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           55 NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        55 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      ..+...+..|+-.++...++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|..+++..+...|+++.+.....
T Consensus       177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~  256 (269)
T PRK10941        177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            34556678899999999999999999999999999999999999999999999999999999999999999988766555


Q ss_pred             HHH
Q 031461          135 ELK  137 (159)
Q Consensus       135 ~~~  137 (159)
                      .+.
T Consensus       257 ql~  259 (269)
T PRK10941        257 QIH  259 (269)
T ss_pred             HHH
Confidence            554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.9e-06  Score=59.10  Aligned_cols=87  Identities=18%  Similarity=0.239  Sum_probs=77.5

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      +..-|..++..+.|+.|+.+|.++|.++|..+..+.+++.||.++.+|+....++.++++++|+....+..++.......
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            34557778889999999999999999999999999999999999999999999999999999999999888888887776


Q ss_pred             HHHHHHH
Q 031461          142 EYAKYQA  148 (159)
Q Consensus       142 ~~~~~~~  148 (159)
                      .+.+.-+
T Consensus        93 ~~~eaI~   99 (284)
T KOG4642|consen   93 GYDEAIK   99 (284)
T ss_pred             cccHHHH
Confidence            6665543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=6.1e-06  Score=60.89  Aligned_cols=107  Identities=15%  Similarity=0.107  Sum_probs=73.5

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN   92 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~   92 (159)
                      .+--|...|..++|..|+.+-.++|+..+++.+               .+..-|.....+++.++|.-.|..|+.+.|..
T Consensus       303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~---------------alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r  367 (564)
T KOG1174|consen  303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE---------------ALILKGRLLIALERHTQAVIAFRTAQMLAPYR  367 (564)
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHhccCcccch---------------HHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence            344566677777888888888888877666533               35666666777777777777777777777777


Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      ...|-.+..+|...|.+.+|...-..++..-|.+......++
T Consensus       368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  368 LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            777777777777777777776666666666666665555553

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.33  E-value=1.4e-06  Score=41.55  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=29.6

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN   92 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~   92 (159)
                      .++..+|.++..+|++++|+.++++++.++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            358899999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.26  E-value=5.4e-06  Score=56.36  Aligned_cols=76  Identities=12%  Similarity=0.083  Sum_probs=70.2

Q ss_pred             HHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHH
Q 031461           56 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKL  131 (159)
Q Consensus        56 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  131 (159)
                      +-+..+++.+|..|-++|-+.-|..+|.+++.+.|.-+.++..+|..+...|+|+.|...|..++.++|.+.-+..
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l  137 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL  137 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence            4467789999999999999999999999999999999999999999999999999999999999999998755443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=98.24  E-value=3e-05  Score=57.41  Aligned_cols=111  Identities=12%  Similarity=0.150  Sum_probs=86.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh---HHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD---DEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      .+.....|..+|+++.|..|+.-|.-++++...-.....   ....++..+...+-..+..||+++++.+-|+....+.|
T Consensus       176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI  255 (569)
T PF15015_consen  176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI  255 (569)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence            455666788888999999999999999888654211111   12223334444456689999999999999999999999


Q ss_pred             hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      .++|.+..-+++.|.|+..+.+|.+|-..+--+.
T Consensus       256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999977765553

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.23  E-value=1e-05  Score=65.23  Aligned_cols=112  Identities=13%  Similarity=0.078  Sum_probs=96.2

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN   92 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~   92 (159)
                      ...+|..+.+.+++..|+..|+-+++.+|.+               ..+|..+|.+|...|.+.-|+..|+++..++|.+
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD---------------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKD---------------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCCchh---------------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence            4447888899999999999999999998876               4559999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      .-+.|..+......|.|.+|+..+...+.....-..++..++.+..+
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir  676 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR  676 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            99999999999999999999999998877655444455555554443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.23  E-value=7.2e-05  Score=49.98  Aligned_cols=103  Identities=15%  Similarity=0.059  Sum_probs=81.1

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      ...+.+..++..++++.|+...+.++....+            ..+...+-.++|.+....|.+++|+..++.....+= 
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-  157 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-  157 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-
Confidence            3567788899999999999999999875322            244556678999999999999999888765433221 


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      .+...-.+|+++...|+-++|...|.+++...++..
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            233467799999999999999999999999985543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=4.8e-05  Score=53.26  Aligned_cols=107  Identities=18%  Similarity=0.281  Sum_probs=85.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      .....+|.+.++.|+.+.|-.+|..+-+....-...         .....+..+.+.+|.-.++|..|...+.+++..||
T Consensus       213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~---------q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~  283 (366)
T KOG2796|consen  213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL---------QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP  283 (366)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc---------chhHHHHhhhhhheecccchHHHHHHHhhccccCC
Confidence            345566777777788777777777655432221111         12245677889999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      .++.+..+.|.|...+|+..+|++..+.++...|..
T Consensus       284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  284 RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            999999999999999999999999999999999975

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.20  E-value=3.2e-06  Score=40.34  Aligned_cols=32  Identities=22%  Similarity=0.381  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461           94 KALYRRSQAHLKTSELEKAEADIKRALTIDPN  125 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  125 (159)
                      .+++.+|.+|..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45666667777777777777777776666663

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.12  E-value=0.00043  Score=50.85  Aligned_cols=125  Identities=16%  Similarity=0.181  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      +...+......|..-+-.|+|..|.....+.-+..+..               ...|..-+.....+|+++.|-.++.++
T Consensus        80 Krrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p---------------~l~~l~aA~AA~qrgd~~~an~yL~ea  144 (400)
T COG3071          80 KRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP---------------VLAYLLAAEAAQQRGDEDRANRYLAEA  144 (400)
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch---------------HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            45677888888999999999999999988866553321               445778888889999999999999999


Q ss_pred             hhcCC-ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           86 LELEP-LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        86 l~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      -+..+ +.....+.++.+....|++..|.....+++...|.++.+......+...++...+
T Consensus       145 ae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         145 AELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             hccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence            99843 3577788999999999999999999999999999999999988888877665544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=98.12  E-value=5.8e-05  Score=47.43  Aligned_cols=84  Identities=21%  Similarity=0.251  Sum_probs=69.1

Q ss_pred             HHHHhhHHHHHhhhh---CHHHHHHHHHHHhh-cCCc-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461           59 LSCYLNNAACKLKLE---DYSETSSLCTKVLE-LEPL-NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  133 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  133 (159)
                      ....+++|.+.....   +..+.+..++..++ -.|. .-.++|.++..++++++|+.|+.+....++.+|+|.++....
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            344678888877755   56778889999887 3343 478899999999999999999999999999999999999888


Q ss_pred             HHHHHHHHH
Q 031461          134 MELKDKQRE  142 (159)
Q Consensus       134 ~~~~~~~~~  142 (159)
                      ..++..+.+
T Consensus       112 ~~ied~itk  120 (149)
T KOG3364|consen  112 ETIEDKITK  120 (149)
T ss_pred             HHHHHHHhh
Confidence            888776654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.11  E-value=9.1e-05  Score=46.55  Aligned_cols=65  Identities=23%  Similarity=0.209  Sum_probs=59.1

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      +-.-|......|+.+.|++.|.++|.+.|..+.+|.++++++.-.|+-++|+.++.+++.+....
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            33456777889999999999999999999999999999999999999999999999999997654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=3.9e-05  Score=55.87  Aligned_cols=71  Identities=15%  Similarity=0.104  Sum_probs=38.1

Q ss_pred             HHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461           65 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  135 (159)
Q Consensus        65 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  135 (159)
                      +|.++...-.|.+|+..+.+++.-+|.....-.+++.||+++.-|+-+...+.-.++..|+.+.+.....-
T Consensus       157 LAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkac  227 (557)
T KOG3785|consen  157 LASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKAC  227 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            33444444455555555555555555555555555555555555555555555555555555554444443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=0.00013  Score=56.79  Aligned_cols=106  Identities=16%  Similarity=0.082  Sum_probs=91.3

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      -.=..++..|...|+..+|..++..|...+...+.+...         ........+++.||+.+.+.+.|.+++++|=+
T Consensus       352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~  422 (872)
T KOG4814|consen  352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE  422 (872)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence            344568888999999999999999999999987765432         22267788999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      .+|.++-..+.+..+...-+.-.+|+.+.......
T Consensus       423 ~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  423 VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             hccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            99999999999999999999999999988776554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.05  E-value=6.9e-05  Score=54.69  Aligned_cols=103  Identities=19%  Similarity=0.184  Sum_probs=68.3

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      +.....|+.+...+.++.+++.|+.|+.+.....+..         +...++..+|..+..++++++|+-+..+|..+-.
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~---------LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~  193 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM---------LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVN  193 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce---------eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHH
Confidence            3455578888888999999999999999876543321         1234566677777777777777777666655421


Q ss_pred             c----------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           91 L----------NVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        91 ~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      .          ..-++|.++.++..+|+.-+|.++++++.++
T Consensus       194 s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  194 SYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             hcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            1          1334566667777777777777777776544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.03  E-value=6.7e-05  Score=55.65  Aligned_cols=102  Identities=14%  Similarity=0.048  Sum_probs=82.7

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--   89 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--   89 (159)
                      .+-..|+.+.-.|+++.|+++|.+.+.+.-.-...+         ......+.+|.+|.-++++.+|+.+.++-+.+.  
T Consensus       237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~---------vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe  307 (639)
T KOG1130|consen  237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT---------VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE  307 (639)
T ss_pred             hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh---------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355678999999999999999999888754333221         124457799999999999999999999987664  


Q ss_pred             ----CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           90 ----PLNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        90 ----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                          .....+.+.+|.++..+|..++|+.+.+..+++
T Consensus       308 L~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  308 LEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                345788999999999999999999988887765

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=98.03  E-value=7.8e-05  Score=53.37  Aligned_cols=76  Identities=24%  Similarity=0.211  Sum_probs=67.8

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      -.+.|.-..+.|+.++|...|+.|+.++|+++.++..+|+.....++.-+|-.+|.+|+.++|.|.++.....+..
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            4455666678999999999999999999999999999999999999999999999999999999988876665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=8.5e-05  Score=54.17  Aligned_cols=87  Identities=16%  Similarity=0.102  Sum_probs=70.2

Q ss_pred             HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHH
Q 031461           19 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYR   98 (159)
Q Consensus        19 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~   98 (159)
                      .+...++|..|+.+.+-........     +         ..+-..+|.|++.+|+|++|+..+..+...+..+.+.+.+
T Consensus        31 dfls~rDytGAislLefk~~~~~EE-----E---------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn   96 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREE-----E---------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN   96 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhh-----h---------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence            4567789999999887655332211     0         2346689999999999999999999999988778999999


Q ss_pred             HHHHHHhhCCHHHHHHHHHHH
Q 031461           99 RSQAHLKTSELEKAEADIKRA  119 (159)
Q Consensus        99 ~~~~~~~~~~~~~A~~~~~~a  119 (159)
                      ++.|++-+|.|.+|...-.++
T Consensus        97 LAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   97 LACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999998776655

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.01  E-value=9.8e-06  Score=38.61  Aligned_cols=33  Identities=36%  Similarity=0.460  Sum_probs=29.8

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN   92 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~   92 (159)
                      .++..+|.++..+|++++|..+++++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            358899999999999999999999999999853

...

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.01  E-value=6.2e-05  Score=59.37  Aligned_cols=123  Identities=27%  Similarity=0.392  Sum_probs=103.5

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh--hhCHHHHHHHHHH
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK--LEDYSETSSLCTK   84 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~   84 (159)
                      +-.+....+.|++.|+.++|..|.--|..++.+.|.+...           ......+.+.|+..  +++|..++..++-
T Consensus        50 l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~-----------~a~~~~~~~s~~m~~~l~~~~~~~~E~~l  118 (748)
T KOG4151|consen   50 LSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV-----------VATLRSNQASCYMQLGLGEYPKAIPECEL  118 (748)
T ss_pred             HHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchh-----------hhhHHHHHHHHHhhcCccchhhhcCchhh
Confidence            4456778899999999999999999999999998865433           24557788888766  5599999999999


Q ss_pred             HhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           85 VLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        85 al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      ++...|...++++.++.+|...+.++-|++.+.-....+|.+.+......+++..+
T Consensus       119 a~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  119 ALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             hhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999998888999999977766555555444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.00042  Score=53.39  Aligned_cols=117  Identities=15%  Similarity=0.088  Sum_probs=82.1

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC------------hHHHHHH----HHHHHHHHhhHHHHHhhhhCH
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDEKHQA----NGLRLSCYLNNAACKLKLEDY   75 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~----~~~~~~~~~~~a~~~~~~~~~   75 (159)
                      .+--.|.++|+.++|++|++.|...++-...+.+..            ..++.+.    .+--...++|.|..+...|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            344568999999999999999998866422210000            0000000    011234588999999999999


Q ss_pred             HHHHHHHHHHhhcC-------Ccc--------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461           76 SETSSLCTKVLELE-------PLN--------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  128 (159)
Q Consensus        76 ~~A~~~~~~al~~~-------~~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  128 (159)
                      .+|++.+..++++.       -.+        ......++.++...|+..+|...|...++..|.|..
T Consensus       192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~  259 (652)
T KOG2376|consen  192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP  259 (652)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence            99999999995442       111        224556888999999999999999999999887753

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.0015  Score=45.15  Aligned_cols=105  Identities=19%  Similarity=0.227  Sum_probs=77.7

Q ss_pred             HHhhhHHHHc-ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461           14 KHDGNLLFRA-GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN   92 (159)
Q Consensus        14 ~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~   92 (159)
                      .+.|..+-.. .+++.||.+|+++-+........         ..-..++...|.....+++|.+|+..|+++.+..-++
T Consensus       117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~---------ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV---------SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3444444433 56778888888877775543221         2234567778888889999999999999998876554


Q ss_pred             -------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461           93 -------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        93 -------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                             -..++.-|.|+....+.=.+...+++...++|.-.
T Consensus       188 ~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  188 NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence                   34566778899998999999999999999999753

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.98  E-value=0.002  Score=46.17  Aligned_cols=123  Identities=20%  Similarity=0.115  Sum_probs=91.8

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcc-cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHH-
Q 031461            1 MDTHEKIEACERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSET-   78 (159)
Q Consensus         1 ~s~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A-   78 (159)
                      ++|+.....++.++.-|...+..+ +++.|+..++++.++.+..+. .........+++..++..++.++...+.++.. 
T Consensus        26 ~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~  104 (278)
T PF08631_consen   26 LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESVE  104 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence            467778889999999999999999 999999999999999643111 11122234577888999999999998876544 


Q ss_pred             --HHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461           79 --SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP  124 (159)
Q Consensus        79 --~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  124 (159)
                        ....+.+-.-.|+.+..++..-.+....++.+.+...+.+.+...+
T Consensus       105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  105 KALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence              3344444445577777776666666668999999999998887655

It is also involved in sporulation [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.00035  Score=53.77  Aligned_cols=117  Identities=20%  Similarity=0.159  Sum_probs=82.5

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC---------hHHHHH---------HHHHHHHHHhhHHHHHhhh
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT---------DDEKHQ---------ANGLRLSCYLNNAACKLKL   72 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~---------~~~~~~~~~~~~a~~~~~~   72 (159)
                      +.++..-+.+-..++|++|..-..+.+...|++...-         .+...+         ........++..|.|++++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            4566677778888999999999999998876542210         000000         0111112235778888999


Q ss_pred             hCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHH
Q 031461           73 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  130 (159)
Q Consensus        73 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  130 (159)
                      +..++|+.+++   .+++.+...+...|++++++|+|++|+..|+...+-+.++....
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~  147 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE  147 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence            99999988887   56677777888899999999999999999998887776665443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.96  E-value=0.00036  Score=54.00  Aligned_cols=103  Identities=21%  Similarity=0.140  Sum_probs=83.0

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .++.+.-...++...|++++|+++.........+.               ..++..+|.++.++|++++|...+...|..
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk---------------~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r   67 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDK---------------LAVLEKRAELLLKLGRKEEAEKIYRELIDR   67 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45677778888899999999999998766554432               455889999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHhcCCCc
Q 031461           89 EPLNVKALYRRSQAHLKTS-----ELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~~  126 (159)
                      +|++...+..+..+.....     +.+.-...|.......|..
T Consensus        68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s  110 (517)
T PF12569_consen   68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS  110 (517)
T ss_pred             CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc
Confidence            9999999999888874333     4566677777776666654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.94  E-value=2.3e-05  Score=36.92  Aligned_cols=31  Identities=26%  Similarity=0.398  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461           95 ALYRRSQAHLKTSELEKAEADIKRALTIDPN  125 (159)
Q Consensus        95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  125 (159)
                      +++++|.++...|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5677777777777777777777777777775

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.93  E-value=7.8e-05  Score=57.68  Aligned_cols=68  Identities=13%  Similarity=-0.034  Sum_probs=59.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|..+...|++++|...+++++.+.++                ...|..+|.++...|++++|...+.+|++++|
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----------------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS----------------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            34556778888899999999999999999763                34589999999999999999999999999999


Q ss_pred             ccHH
Q 031461           91 LNVK   94 (159)
Q Consensus        91 ~~~~   94 (159)
                      .++.
T Consensus       485 ~~pt  488 (517)
T PRK10153        485 GENT  488 (517)
T ss_pred             CCch
Confidence            9875

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=0.00025  Score=51.13  Aligned_cols=84  Identities=17%  Similarity=0.113  Sum_probs=72.7

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPL----NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      +.-|-.-|+-|++-++|..|..+|.++|.....    ++..|.+++-|.+.+|+|..|+.++.+++.++|.+..+...-+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            334667899999999999999999999987643    3677889999999999999999999999999999988777777


Q ss_pred             HHHHHHHH
Q 031461          135 ELKDKQRE  142 (159)
Q Consensus       135 ~~~~~~~~  142 (159)
                      .|.-.++.
T Consensus       161 kc~~eLe~  168 (390)
T KOG0551|consen  161 KCLLELER  168 (390)
T ss_pred             HHHHHHHH
Confidence            77777766

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.0025  Score=44.13  Aligned_cols=107  Identities=21%  Similarity=0.145  Sum_probs=77.7

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .++.+...|+.+.-.++|..|=..|.++-++.-.....         .--..+|...+.||.+. ++.+|..+++++|.+
T Consensus        33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~sk---------hDaat~YveA~~cykk~-~~~eAv~cL~~aieI  102 (288)
T KOG1586|consen   33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSK---------HDAATTYVEAANCYKKV-DPEEAVNCLEKAIEI  102 (288)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCc---------hhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHH
Confidence            45666666777777788888888888887764432221         11255677788887555 999999999999998


Q ss_pred             CCcc------HHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCC
Q 031461           89 EPLN------VKALYRRSQAHLKT-SELEKAEADIKRALTIDPN  125 (159)
Q Consensus        89 ~~~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~  125 (159)
                      ..+-      ++.+..+|.+|..- .++++|+..|+++-.....
T Consensus       103 yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~  146 (288)
T KOG1586|consen  103 YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG  146 (288)
T ss_pred             HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence            7543      45566899998665 9999999999998766443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.90  E-value=0.00011  Score=51.06  Aligned_cols=71  Identities=21%  Similarity=0.209  Sum_probs=64.2

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV  129 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  129 (159)
                      ...+++-|...+..|+|++|...|+.+....|.+   .++.+.++.+++..++++.|+....+.+.+.|+++++
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            3448899999999999999999999999888754   7899999999999999999999999999999988654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.90  E-value=4.9e-06  Score=39.89  Aligned_cols=33  Identities=30%  Similarity=0.318  Sum_probs=28.8

Q ss_pred             HHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHH
Q 031461           32 KYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS   79 (159)
Q Consensus        32 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~   79 (159)
                      +|+++|++.|+++               .+|+++|.++...|++++|+
T Consensus         1 ~y~kAie~~P~n~---------------~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNA---------------EAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCH---------------HHHHHHHHHHHHCcCHHhhc
Confidence            4789999988874               45999999999999999986

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.89  E-value=0.00088  Score=46.07  Aligned_cols=100  Identities=15%  Similarity=0.084  Sum_probs=71.7

Q ss_pred             HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH-------hhcC--
Q 031461           19 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV-------LELE--   89 (159)
Q Consensus        19 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-------l~~~--   89 (159)
                      .+-....+++|+..|..|+-.........        ...+.+++.+|.+|..+|+-+....++++|       +...  
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~--------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~  157 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKP--------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF  157 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            44456789999999999888654222110        234667889999999998855555555554       4433  


Q ss_pred             C----ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           90 P----LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        90 ~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      |    +.....|.+|.++.++|++++|+++|.+++..-..+
T Consensus       158 ~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  158 PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            2    236788999999999999999999999998775443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.89  E-value=0.00016  Score=55.36  Aligned_cols=99  Identities=19%  Similarity=0.226  Sum_probs=79.0

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN   92 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~   92 (159)
                      +...|..+...|+.+.|+..|++++.....        +.   ++...++..+|.|+..+++|++|..++.+..+.+. +
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--------~~---Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-W  337 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSE--------WK---QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-W  337 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhh--------HH---hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-c
Confidence            667889999999999999999998853222        22   33456789999999999999999999999998654 4


Q ss_pred             HH--HHHHHHHHHHhhCCH-------HHHHHHHHHHHhcC
Q 031461           93 VK--ALYRRSQAHLKTSEL-------EKAEADIKRALTID  123 (159)
Q Consensus        93 ~~--~~~~~~~~~~~~~~~-------~~A~~~~~~al~~~  123 (159)
                      .+  ..|..|.|+..+++.       ++|...+.++-.+-
T Consensus       338 Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  338 SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            44  445578899999999       88888888875553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.88  E-value=0.0006  Score=54.78  Aligned_cols=114  Identities=17%  Similarity=0.071  Sum_probs=93.6

Q ss_pred             hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHH
Q 031461           18 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALY   97 (159)
Q Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   97 (159)
                      ......+++..|+....+.++..|+.+               .+...-|....++|..++|..+++..-...+++...+-
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~---------------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq   81 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNAL---------------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQ   81 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHH
Confidence            345678899999999999999877643               22445677889999999999888777778888888899


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 031461           98 RRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ  147 (159)
Q Consensus        98 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  147 (159)
                      .+-.||..++.+++|+..|+++...+|+ .+....+-.+..+.+.++++.
T Consensus        82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQ  130 (932)
T KOG2053|consen   82 FLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQ  130 (932)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 777777777776666665544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.87  E-value=0.00048  Score=55.35  Aligned_cols=63  Identities=5%  Similarity=-0.062  Sum_probs=52.4

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      .+|..+...+...|+++.|...+++++.++|+++..|..++.+|...|++++|.+.++.....
T Consensus       495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            447777777888888999988888888888888888888888999999999998888776543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.85  E-value=9.9e-05  Score=39.00  Aligned_cols=40  Identities=30%  Similarity=0.494  Sum_probs=33.1

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS  100 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (159)
                      +++.+|..+.++|+|.+|..+++.+++++|+|..+.-...
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            4678899999999999999999999999999988755443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.84  E-value=0.00045  Score=45.72  Aligned_cols=72  Identities=17%  Similarity=0.186  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461           75 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL----------EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  144 (159)
Q Consensus        75 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  144 (159)
                      |+.|.+.++.....+|.++.++++-|.++..+.++          ++|+.-|+.|+.++|+...+...++.+...++...
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            78899999999999999999999999999888544          56788899999999999999999999988877644


Q ss_pred             HH
Q 031461          145 KY  146 (159)
Q Consensus       145 ~~  146 (159)
                      ..
T Consensus        87 ~d   88 (186)
T PF06552_consen   87 PD   88 (186)
T ss_dssp             --
T ss_pred             CC
Confidence            33

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.81  E-value=0.00082  Score=40.92  Aligned_cols=103  Identities=17%  Similarity=0.132  Sum_probs=76.7

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHH----hhhhCHHHHHHHHHHHhhcCCc
Q 031461           16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK----LKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      ++..++.+|++-+|++..+..+...+++...    + .+..+...++..+|..-    .+..-.-.+++++.++..+.|.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~----~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~   76 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESS----W-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD   76 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCch----H-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence            5778999999999999999999886654432    0 22333333444444331    2223356688899999999999


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTID  123 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  123 (159)
                      .+..++.+|.-+.....|++++.-.++++.+.
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999988763

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.00088  Score=46.56  Aligned_cols=131  Identities=16%  Similarity=0.100  Sum_probs=86.2

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh----cC-
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE----LE-   89 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~-   89 (159)
                      +++-...+.-++++|+.+|.+++.+...+...         ..-...+...+..+..++.|++|-..+.+-..    .+ 
T Consensus       115 eKAak~lenv~Pd~AlqlYqralavve~~dr~---------~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~  185 (308)
T KOG1585|consen  115 EKAAKALENVKPDDALQLYQRALAVVEEDDRD---------QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA  185 (308)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhccchH---------HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence            33444455566777777777777776543322         33345677888999999999999888877543    22 


Q ss_pred             -CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461           90 -PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus        90 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (159)
                       |+.-+++.....+|...++|..|..+++..-++..-+.  ......+...++-+++.+...+++|.+
T Consensus       186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~--sed~r~lenLL~ayd~gD~E~~~kvl~  251 (308)
T KOG1585|consen  186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK--SEDSRSLENLLTAYDEGDIEEIKKVLS  251 (308)
T ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC--hHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence             44455566666677778899999999998765532221  123344556677777777777777654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.78  E-value=0.00034  Score=51.23  Aligned_cols=109  Identities=17%  Similarity=0.103  Sum_probs=87.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      .+.+..+|..+-..+++++|+-+-.+|.++..+..-.   +|.  .-.+...++-++..+..+|....|.++|+++.++.
T Consensus       162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~---d~~--~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK---DWS--LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC---chh--HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            4557778888889999999999999999987653311   111  12344557788999999999999999999998764


Q ss_pred             ------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461           90 ------PLNVKALYRRSQAHLKTSELEKAEADIKRALTID  123 (159)
Q Consensus        90 ------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  123 (159)
                            +..+..+.-+|++|...|+.+.|..-|+.|....
T Consensus       237 l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  237 LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence                  4557888899999999999999999999997663

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.74  E-value=0.0012  Score=53.04  Aligned_cols=84  Identities=13%  Similarity=0.086  Sum_probs=61.6

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      .|..+...+.+.|++++|...+++. ...| +...|..+..++...|+++.|...+++.+.+.|++...+..+..+....
T Consensus       464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~  541 (697)
T PLN03081        464 HYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS  541 (697)
T ss_pred             chHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence            4666777777888888887777653 2333 4555777777888888888888888888888888877777777777666


Q ss_pred             HHHHHH
Q 031461          141 REYAKY  146 (159)
Q Consensus       141 ~~~~~~  146 (159)
                      ++.++.
T Consensus       542 G~~~~A  547 (697)
T PLN03081        542 GRQAEA  547 (697)
T ss_pred             CCHHHH
Confidence            665444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.74  E-value=6.5e-05  Score=36.39  Aligned_cols=25  Identities=24%  Similarity=0.190  Sum_probs=14.3

Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           96 LYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        96 ~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      +.++|.+|...|+|++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556666666666666666666643

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.74  E-value=0.0048  Score=41.04  Aligned_cols=58  Identities=29%  Similarity=0.388  Sum_probs=26.3

Q ss_pred             HHhhhhCHHHHHHHHHHHhhcCC---ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461           68 CKLKLEDYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN  125 (159)
Q Consensus        68 ~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  125 (159)
                      ++...|+++.|...+.+++...|   .....+...+..+...++++.|+..+.+++...|.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            44444444444444444444333   23333334444444444444444444444444444

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.69  E-value=0.00025  Score=53.67  Aligned_cols=123  Identities=18%  Similarity=0.038  Sum_probs=89.4

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh-c-
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE-L-   88 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~-   88 (159)
                      ..+.-+++..|-.|+|..|.+.....=-........++      +-.....++|+|.+++.++.|.-+..+|.+|++ . 
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~------q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c  314 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITP------QLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC  314 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccc------hhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence            34555677778888888888776421110000001110      011233468999999999999999999999996 1 


Q ss_pred             -------CC---------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           89 -------EP---------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        89 -------~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                             .|         .....+|+.|..|.+.|+--.|.++|.++......||..|..++.|=..
T Consensus       315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                   11         2467799999999999999999999999999999999999988886533

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.00016  Score=51.72  Aligned_cols=93  Identities=19%  Similarity=0.323  Sum_probs=75.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +......|...|+.|+|+.|+..|+.++......|-               +-+++|.|++..|+++.|+.+..++|...
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---------------lAYniALaHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---------------LAYNLALAHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhhcCCCch---------------hHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            556778899999999999999999999998666543               36799999999999999999988887542


Q ss_pred             ----Cc----------------c---------HHHHHHHHHHHHhhCCHHHHHHHHH
Q 031461           90 ----PL----------------N---------VKALYRRSQAHLKTSELEKAEADIK  117 (159)
Q Consensus        90 ----~~----------------~---------~~~~~~~~~~~~~~~~~~~A~~~~~  117 (159)
                          |.                +         ..++...+-++++.++++.|...+.
T Consensus       209 ~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  209 IRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             hhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                21                1         4456667888999999999987654

>PLN03077 Protein ECB2; Provisional

Probab=97.67  E-value=0.0028  Score=52.26  Aligned_cols=132  Identities=12%  Similarity=0.035  Sum_probs=71.6

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHh--cccCCCC------------hHHHHHHHH--------HHHHHHhhHHHHH
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKII--EFHHSFT------------DDEKHQANG--------LRLSCYLNNAACK   69 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~------------~~~~~~~~~--------~~~~~~~~~a~~~   69 (159)
                      .+......+...|+.++|+..|.+..+..  |+...+.            ++-......        .....|..+..++
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l  635 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL  635 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            35556667777888888888887766531  1111000            000000000        0122455666666


Q ss_pred             hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      .+.|++++|...+++. .+.|+ +..|..+-.++...++.+.+....+++++++|++......+..+....++.++
T Consensus       636 ~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~  709 (857)
T PLN03077        636 GRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE  709 (857)
T ss_pred             HhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence            6666666666666553 23442 33344444455556666666666666777777777777777777665555433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.67  E-value=0.0062  Score=40.48  Aligned_cols=107  Identities=28%  Similarity=0.282  Sum_probs=81.8

Q ss_pred             HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc-cHHHHH
Q 031461           19 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-NVKALY   97 (159)
Q Consensus        19 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~   97 (159)
                      .++..|+++.|+..|.+++...+....            ....+...+..+...++++.|+..+.+++...+. ....+.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  206 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNE------------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL  206 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccc------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence            677888888888888888664331001            1333555566677889999999999999999998 799999


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           98 RRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        98 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      .++.++...+++..|...+..++...|...........+.
T Consensus       207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  246 (291)
T COG0457         207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLL  246 (291)
T ss_pred             HhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHH
Confidence            9999999999999999999999999998444444444333

>smart00028 TPR Tetratricopeptide repeats

Probab=97.66  E-value=0.00013  Score=33.37  Aligned_cols=31  Identities=39%  Similarity=0.557  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461           95 ALYRRSQAHLKTSELEKAEADIKRALTIDPN  125 (159)
Q Consensus        95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  125 (159)
                      +++.+|.++...+++++|+.+|.+++.+.|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4455555555555555555555555555553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.00061  Score=48.81  Aligned_cols=85  Identities=13%  Similarity=0.055  Sum_probs=71.3

Q ss_pred             HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461           21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS  100 (159)
Q Consensus        21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (159)
                      .+..+|.+||.+..--.+..|.+               ...+..+|.||....+|..|-.++++.-.+.|.....-+.-+
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~---------------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~A   85 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRS---------------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA   85 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccc---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            56778888888876555554432               344889999999999999999999999999999999999999


Q ss_pred             HHHHhhCCHHHHHHHHHHHH
Q 031461          101 QAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus       101 ~~~~~~~~~~~A~~~~~~al  120 (159)
                      +.++..+.+.+|+.......
T Consensus        86 QSLY~A~i~ADALrV~~~~~  105 (459)
T KOG4340|consen   86 QSLYKACIYADALRVAFLLL  105 (459)
T ss_pred             HHHHHhcccHHHHHHHHHhc
Confidence            99999999999987766554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.65  E-value=0.00061  Score=50.11  Aligned_cols=97  Identities=22%  Similarity=0.071  Sum_probs=51.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      .+.....+..+...|.+++|......+++..-+.                .+...+  -....+++..=++..++.++..
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~----------------~L~~~~--~~l~~~d~~~l~k~~e~~l~~h  324 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP----------------RLCRLI--PRLRPGDPEPLIKAAEKWLKQH  324 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh----------------hHHHHH--hhcCCCCchHHHHHHHHHHHhC
Confidence            3444556677788899999999999988863321                000000  0123344444444444444444


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP  124 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  124 (159)
                      |+++..+..+|..++..+.|.+|...|+.+++.-|
T Consensus       325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~  359 (400)
T COG3071         325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP  359 (400)
T ss_pred             CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence            44444444444444444444444444444444444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.64  E-value=8.4e-05  Score=35.97  Aligned_cols=28  Identities=18%  Similarity=0.160  Sum_probs=24.1

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +.++|.+|..+|+|++|+.++++++.+.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            7899999999999999999999966543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.63  E-value=8.7e-05  Score=34.85  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=29.6

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN   92 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~   92 (159)
                      +++++|.++..+|++++|...+++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            47899999999999999999999999999974

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.001  Score=46.34  Aligned_cols=81  Identities=19%  Similarity=0.160  Sum_probs=67.6

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhc--------CCcc----------HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLEL--------EPLN----------VKALYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      .+++...|+-+++.|+|.+|...|..||..        .|..          ...+.+.++|+...|+|-+++..+..++
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            345778899999999999999999998732        2332          4468899999999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHH
Q 031461          121 TIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus       121 ~~~p~~~~~~~~~~~~~~~  139 (159)
                      ..+|.|..+....++.+..
T Consensus       258 ~~~~~nvKA~frRakAhaa  276 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAA  276 (329)
T ss_pred             hcCCchHHHHHHHHHHHHh
Confidence            9999998888877776644

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.61  E-value=0.00014  Score=49.99  Aligned_cols=60  Identities=23%  Similarity=0.342  Sum_probs=55.8

Q ss_pred             HHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461           68 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        68 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      ...+.++.+.|.+.+++++.+-|.|...|+++|....+.|+++.|.+.|++.++++|.+-
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345678899999999999999999999999999999999999999999999999999873

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0089  Score=42.71  Aligned_cols=116  Identities=17%  Similarity=0.147  Sum_probs=89.5

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH-----
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV-----   85 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-----   85 (159)
                      +.....|......|++.+|...|..++...+.+...               ...++.|+...|+++.|...+...     
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~---------------~~~la~~~l~~g~~e~A~~iL~~lP~~~~  199 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEA---------------KLLLAECLLAAGDVEAAQAILAALPLQAQ  199 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchH---------------HHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence            345566778899999999999999999998876433               678888999988887777666541     


Q ss_pred             -----------------------------hhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC--CcHHHHHHHH
Q 031461           86 -----------------------------LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP--NNRVVKLVYM  134 (159)
Q Consensus        86 -----------------------------l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~  134 (159)
                                                   +..+|++..+-+.+|..+...|+.+.|...+-..+..+-  .|..+++.+-
T Consensus       200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll  279 (304)
T COG3118         200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL  279 (304)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence                                         123688999999999999999999999988887776654  3456666666


Q ss_pred             HHHHHHH
Q 031461          135 ELKDKQR  141 (159)
Q Consensus       135 ~~~~~~~  141 (159)
                      .+...++
T Consensus       280 e~f~~~g  286 (304)
T COG3118         280 ELFEAFG  286 (304)
T ss_pred             HHHHhcC
Confidence            6665554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.59  E-value=0.0041  Score=44.62  Aligned_cols=110  Identities=16%  Similarity=0.170  Sum_probs=80.5

Q ss_pred             hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHhhcCCccHHH
Q 031461           17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLELEPLNVKA   95 (159)
Q Consensus        17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~~~~~~~   95 (159)
                      .+-..+.+..+.|-..|.+|.......               ..+|...|..-.. .++...|...|+.+++..|.+...
T Consensus         8 m~~~~r~~g~~~aR~vF~~a~~~~~~~---------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~   72 (280)
T PF05843_consen    8 MRFMRRTEGIEAARKVFKRARKDKRCT---------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF   72 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCS----------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHhCChHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH
Confidence            344445566888889999987421111               3447778888555 677777999999999999999999


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHH
Q 031461           96 LYRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKLVYMELKDKQR  141 (159)
Q Consensus        96 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~  141 (159)
                      |......+...|+.+.|...|++++..-|...   .++......+...+
T Consensus        73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G  121 (280)
T PF05843_consen   73 WLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG  121 (280)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999887765   35554444444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.59  E-value=8.3e-05  Score=55.78  Aligned_cols=84  Identities=25%  Similarity=0.242  Sum_probs=71.0

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      +-+-+.-.++-+.|+.|+..+.+||.++|+++..+-+++.++...++|..|+.++.++++++|....+....+..-..+.
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            44667777889999999999999999999999999999999999999999999999999999987666555555555555


Q ss_pred             HHHH
Q 031461          142 EYAK  145 (159)
Q Consensus       142 ~~~~  145 (159)
                      +..+
T Consensus        87 ~~~~   90 (476)
T KOG0376|consen   87 EFKK   90 (476)
T ss_pred             HHHH
Confidence            5443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.57  E-value=0.0078  Score=42.44  Aligned_cols=66  Identities=18%  Similarity=0.258  Sum_probs=31.7

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHH-HHHHHhcCCCcH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEAD-IKRALTIDPNNR  127 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~  127 (159)
                      .+..|.|++.+++|++|...++.++..++.++.++.++-.+-..+|.-.++... +.+....+|+++
T Consensus       210 lnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  210 LNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            444455555555555555555555555555555555555555555544333322 233333344443

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.57  E-value=0.012  Score=49.68  Aligned_cols=93  Identities=9%  Similarity=-0.019  Sum_probs=43.2

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh----cCC
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE----LEP   90 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~   90 (159)
                      .....+.+.|++++|+..|.......- .|.             ..+|..+...+.+.|++++|...+.+...    +.|
T Consensus       512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv-~PD-------------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P  577 (1060)
T PLN03218        512 ALIDGCARAGQVAKAFGAYGIMRSKNV-KPD-------------RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP  577 (1060)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHcCC-CCC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC
Confidence            334455666777777777665543210 010             22344444444445555555555544432    122


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                       +...+..+..+|.+.|++++|...|+.....
T Consensus       578 -D~vTynaLI~ay~k~G~ldeA~elf~~M~e~  608 (1060)
T PLN03218        578 -DHITVGALMKACANAGQVDRAKEVYQMIHEY  608 (1060)
T ss_pred             -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence             2233344444444455555555544444433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.57  E-value=0.0032  Score=52.03  Aligned_cols=101  Identities=16%  Similarity=0.151  Sum_probs=68.5

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC--
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP--   90 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--   90 (159)
                      ....|..+...|+++.|...+.+++.........         .....++.++|.++...|+++.|...+.+++.+..  
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  564 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVY---------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ  564 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence            4456666777778888887777777764432211         11233466778888888888888888888876521  


Q ss_pred             ------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           91 ------LNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        91 ------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                            .....+..+|.++...|++++|...+.+++.+
T Consensus       565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  602 (903)
T PRK04841        565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV  602 (903)
T ss_pred             ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence                  11233556788888888888888888887765

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.55  E-value=0.012  Score=49.64  Aligned_cols=96  Identities=5%  Similarity=-0.148  Sum_probs=47.8

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHh-cccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC-C
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKII-EFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-P   90 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~   90 (159)
                      +...-..+.+.|++++|...|....... +-.|+             ..+|..+-.+|.+.|++++|...++...+.+ +
T Consensus       545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-------------~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~  611 (1060)
T PLN03218        545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-------------HITVGALMKACANAGQVDRAKEVYQMIHEYNIK  611 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            3344455566677777777776654421 11111             2234444455555555555555555555443 2


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALT  121 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  121 (159)
                      .++..|..+...|.+.|++++|...|.....
T Consensus       612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3344444455555555555555555554443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.54  E-value=0.0023  Score=42.70  Aligned_cols=103  Identities=15%  Similarity=0.093  Sum_probs=80.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      -..+.++|..+.+.|+.+.|++.|.++.+......            ....+++++-.+.+..++|..+..+..++-.+-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~------------~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG------------HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999887654432            236668888899999999999999999986653


Q ss_pred             C--cc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461           90 P--LN----VKALYRRSQAHLKTSELEKAEADIKRALTIDP  124 (159)
Q Consensus        90 ~--~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  124 (159)
                      .  .+    .+.-...|..+...++|..|-..|-.+..-..
T Consensus       104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence            2  22    33455678888889999999988887765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.53  E-value=0.0044  Score=47.23  Aligned_cols=81  Identities=19%  Similarity=0.218  Sum_probs=69.1

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE-LEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      .+|.+......+.+.+.+--..|.+++...|+++..|..-|.-.+.-+. .+.|...|.++++.+|+++..+...-++.-
T Consensus       106 ~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL  185 (568)
T KOG2396|consen  106 KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMEL  185 (568)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Confidence            4467666667777779999999999999999999999999997777665 999999999999999999998888777664


Q ss_pred             HH
Q 031461          139 KQ  140 (159)
Q Consensus       139 ~~  140 (159)
                      ..
T Consensus       186 ~~  187 (568)
T KOG2396|consen  186 MY  187 (568)
T ss_pred             HH
Confidence            43

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=97.50  E-value=0.001  Score=37.87  Aligned_cols=68  Identities=18%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+....+.|..+|.+.+..+|+..+.+++...++.+            .+..++..+..+|...|+|.+.+.+.-.-+.+
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466778899999999999999999999999876642            24677888999999999999999988776654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>smart00028 TPR Tetratricopeptide repeats

Probab=97.48  E-value=0.00027  Score=32.17  Aligned_cols=31  Identities=39%  Similarity=0.508  Sum_probs=28.8

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      ++.++|.++..+++++.|..++++++.++|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4789999999999999999999999999885

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PLN03077 Protein ECB2; Provisional

Probab=97.48  E-value=0.0073  Score=49.85  Aligned_cols=91  Identities=14%  Similarity=0.012  Sum_probs=67.4

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV   93 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~   93 (159)
                      ......+.+.|++++|...+++.    +-.|+             ..+|..+-..+...++.+.+....+++++++|+++
T Consensus       629 ~~lv~~l~r~G~~~eA~~~~~~m----~~~pd-------------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~  691 (857)
T PLN03077        629 ACVVDLLGRAGKLTEAYNFINKM----PITPD-------------PAVWGALLNACRIHRHVELGELAAQHIFELDPNSV  691 (857)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHC----CCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence            33445555666666666665542    11111             33455555566778999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461           94 KALYRRSQAHLKTSELEKAEADIKRALT  121 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~  121 (159)
                      ..+..++.+|...|+|++|.+..+....
T Consensus       692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        692 GYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             chHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            9999999999999999999988877643

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.0064  Score=42.86  Aligned_cols=116  Identities=19%  Similarity=0.147  Sum_probs=91.2

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh----hhCHHHHHHHHHHHh
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKVL   86 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al   86 (159)
                      +...-.-.++.+..+.+.|....++...++....                 +..+|..+.+    .+++.+|.-+|++.-
T Consensus       138 E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t-----------------LtQLA~awv~la~ggek~qdAfyifeE~s  200 (299)
T KOG3081|consen  138 EAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT-----------------LTQLAQAWVKLATGGEKIQDAFYIFEELS  200 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH-----------------HHHHHHHHHHHhccchhhhhHHHHHHHHh
Confidence            3344445677888899999999999888866521                 4445555554    347999999999999


Q ss_pred             hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      ...|..+..+...+.|+..+|+|++|...++.++.-+++++.....+-.+--..++-
T Consensus       201 ~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  201 EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            877778889999999999999999999999999999999988877766655444443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.018  Score=40.33  Aligned_cols=126  Identities=18%  Similarity=0.130  Sum_probs=86.9

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--   89 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--   89 (159)
                      .+...++.+...++|+.|..++.++++....+...=         .-...|-..+.....+..+.++..+++++..+.  
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf---------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF---------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE  103 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            344445555567899999999999997765543320         014457778888888999999999999998764  


Q ss_pred             ---CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc---HHH---HHHHHHHHHHHHHHHHH
Q 031461           90 ---PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVV---KLVYMELKDKQREYAKY  146 (159)
Q Consensus        90 ---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~---~~~~~~~~~~~~~~~~~  146 (159)
                         |+.+..-+..+-=....-+-++|++.|++++.+...+   ..+   .....++..+++++.+.
T Consensus       104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea  169 (308)
T KOG1585|consen  104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA  169 (308)
T ss_pred             hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence               6666666777777788889999999999998775433   222   23333444555555443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.0019  Score=45.51  Aligned_cols=81  Identities=14%  Similarity=0.160  Sum_probs=69.9

Q ss_pred             HHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461           56 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  135 (159)
Q Consensus        56 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  135 (159)
                      .+...+..++=..+..-++++.|..+.++.+.++|.++.-+.-+|-+|.++|.+.-|+.+++..+..-|+++.+......
T Consensus       178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            34455566777788889999999999999999999999999999999999999999999999999999998776544444


Q ss_pred             H
Q 031461          136 L  136 (159)
Q Consensus       136 ~  136 (159)
                      +
T Consensus       258 l  258 (269)
T COG2912         258 L  258 (269)
T ss_pred             H
Confidence            3

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.40  E-value=0.0046  Score=51.13  Aligned_cols=103  Identities=11%  Similarity=0.051  Sum_probs=80.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +......|..++..|+++.|...+..++...+....          .....+...+|.++...|++++|...+.+++...
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~  521 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWY----------YSRIVATSVLGEVHHCKGELARALAMMQQTEQMA  521 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            334445678889999999999999999986433211          1123456788999999999999999999998653


Q ss_pred             Cc------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           90 PL------NVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        90 ~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      ..      ...++..+|.++...|+++.|...+.+++.+
T Consensus       522 ~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        522 RQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            21      1456778899999999999999999998876

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.39  E-value=0.005  Score=36.36  Aligned_cols=67  Identities=13%  Similarity=0.140  Sum_probs=53.9

Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHHH
Q 031461           79 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        79 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~  145 (159)
                      +..++..+..+|++..+.+.+|..+...|++++|+..+-.++..+|+.  ..++..+-.+...++....
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p   76 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP   76 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence            456788899999999999999999999999999999999999998765  6787888888777766443

>PRK10941 hypothetical protein; Provisional

Probab=97.38  E-value=0.0031  Score=44.89  Aligned_cols=80  Identities=13%  Similarity=-0.084  Sum_probs=68.4

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      ....+...=..+.+.++++.|+.+.+..+.+.|.++..               +..+|.+|..+|.+..|..+++.-+..
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e---------------~RDRGll~~qL~c~~~A~~DL~~fl~~  244 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYE---------------IRDRGLIYAQLDCEHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            44556666778889999999999999999999887643               778999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAH  103 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~  103 (159)
                      .|+.+.+..-+.++.
T Consensus       245 ~P~dp~a~~ik~ql~  259 (269)
T PRK10941        245 CPEDPISEMIRAQIH  259 (269)
T ss_pred             CCCchhHHHHHHHHH
Confidence            999988876665543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.37  E-value=0.0007  Score=48.67  Aligned_cols=81  Identities=16%  Similarity=0.186  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ++.+......+....+.|+-+.|..+|.-|+.+.|..+..               +...|......++.-+|-.+|-+|+
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---------------L~e~G~f~E~~~~iv~ADq~Y~~AL  177 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---------------LIEMGQFREMHNEIVEADQCYVKAL  177 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---------------HHHHhHHHHhhhhhHhhhhhhheee
Confidence            3445555556667789999999999999999998887543               7888998888899999999999999


Q ss_pred             hcCCccHHHHHHHHHH
Q 031461           87 ELEPLNVKALYRRSQA  102 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~  102 (159)
                      .++|.+.+++.+++..
T Consensus       178 tisP~nseALvnR~RT  193 (472)
T KOG3824|consen  178 TISPGNSEALVNRART  193 (472)
T ss_pred             eeCCCchHHHhhhhcc
Confidence            9999999999887654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.37  E-value=0.003  Score=49.15  Aligned_cols=93  Identities=13%  Similarity=0.053  Sum_probs=81.5

Q ss_pred             HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461           21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS  100 (159)
Q Consensus        21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (159)
                      .-+|+..+|+.++..++-..+....             ..+++.+|.+...+|...+|--.+..|+...|.-..-++.+|
T Consensus       224 R~~G~~~~A~~Ca~~a~hf~~~h~k-------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~  290 (886)
T KOG4507|consen  224 RIKGEPYQAVECAMRALHFSSRHNK-------------DIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLG  290 (886)
T ss_pred             HHcCChhhhhHHHHHHhhhCCcccc-------------cchhhhHHHHHHHcccccchhheeehhccCCccccccceeHH
Confidence            4569999999999999998765332             345889999999999999999999889988887777799999


Q ss_pred             HHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461          101 QAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus       101 ~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      .++..+++|...+.+|..+.+..|.-
T Consensus       291 ~i~aml~~~N~S~~~ydha~k~~p~f  316 (886)
T KOG4507|consen  291 NIYAMLGEYNHSVLCYDHALQARPGF  316 (886)
T ss_pred             HHHHHHhhhhhhhhhhhhhhccCcch
Confidence            99999999999999999999998864

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.32  E-value=0.015  Score=37.31  Aligned_cols=90  Identities=24%  Similarity=0.273  Sum_probs=64.5

Q ss_pred             hHHHHHhhhhCHHHHHHHHHHHhhcCC----------------------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461           64 NNAACKLKLEDYSETSSLCTKVLELEP----------------------LNVKALYRRSQAHLKTSELEKAEADIKRALT  121 (159)
Q Consensus        64 ~~a~~~~~~~~~~~A~~~~~~al~~~~----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  121 (159)
                      ..|......++...+...+.+++.+..                      ....++..++..+...|++++|+..+.+++.
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~   90 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA   90 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            334445566778888888888876641                      1244566688889999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461          122 IDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       122 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      .+|.+..++..+..+....+......+ .|.++
T Consensus        91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~-~Y~~~  122 (146)
T PF03704_consen   91 LDPYDEEAYRLLMRALAAQGRRAEALR-VYERY  122 (146)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHH-HHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCcCHHHHHH-HHHHH
Confidence            999999999999999988877755533 44443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.28  E-value=0.014  Score=41.93  Aligned_cols=104  Identities=19%  Similarity=0.184  Sum_probs=78.6

Q ss_pred             HHHhhhHHHH-cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           13 KKHDGNLLFR-AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        13 ~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      +...|..-+. .++.+.|...|+.+++..+.++.               ++..........++.+.|...|++++..-|.
T Consensus        38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~---------------~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD---------------FWLEYLDFLIKLNDINNARALFERAISSLPK  102 (280)
T ss_dssp             HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH---------------HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence            4455666566 57777799999999999887643               3666677888999999999999999987665


Q ss_pred             cH---HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHH
Q 031461           92 NV---KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKL  131 (159)
Q Consensus        92 ~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  131 (159)
                      ..   ..|-.....=...|+.+......+++....|.+..+..
T Consensus       103 ~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen  103 EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            54   46666777778889999999999999999888655444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.026  Score=43.16  Aligned_cols=60  Identities=20%  Similarity=0.297  Sum_probs=47.1

Q ss_pred             HHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           67 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        67 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      ..-..+++++.+...+++-|...|.+..+|...|..-..+|+.+.|...|.-|++.-.-+
T Consensus       445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld  504 (677)
T KOG1915|consen  445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALD  504 (677)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc
Confidence            334567788888888888888888888888888888888888888888888877665444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.017  Score=40.96  Aligned_cols=117  Identities=15%  Similarity=0.095  Sum_probs=89.2

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh----hc
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL----EL   88 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~   88 (159)
                      .....+.+.-.|.|.-.++.+.++++.+|.   .           ...+...+|.+.+.-|+.+.|..+++.+-    .+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e---~-----------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL  245 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPE---Q-----------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL  245 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCc---c-----------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Confidence            334456666778899999999999986432   1           13457789999999999999999999543    33


Q ss_pred             C--CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           89 E--PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        89 ~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      +  ..+.-...+.+.+|...++|.+|...|.+++..+|.++.+....+-|..=+++-
T Consensus       246 ~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l  302 (366)
T KOG2796|consen  246 DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL  302 (366)
T ss_pred             hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence            3  334667788889999999999999999999999999987776666665444443

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=97.21  E-value=0.0063  Score=37.75  Aligned_cols=117  Identities=15%  Similarity=0.048  Sum_probs=78.8

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH----hh
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV----LE   87 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a----l~   87 (159)
                      .+.-.|+.+++.+++-.+|-.|.+|+.+.......+..+..++.-+......|+|..+..+|+.+-.+.|++-|    +.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            45567899999999999999999999997765444444455555556666789999999999999999988754    55


Q ss_pred             cCCccHHHHHHHHHH-HHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQA-HLKTSELEKAEADIKRALTIDPNNRVVKLVYME  135 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  135 (159)
                      +-|..+..-   ..+ --.+|--..|+-.   .++..|+ |.+...+..
T Consensus        83 LiPQCp~~~---C~afi~sLGCCk~ALl~---F~KRHPN-P~iA~~vq~  124 (140)
T PF10952_consen   83 LIPQCPNTE---CEAFIDSLGCCKKALLD---FMKRHPN-PEIARLVQH  124 (140)
T ss_pred             hccCCCCcc---hHHHHHhhhccHHHHHH---HHHhCCC-HHHHHHHHh
Confidence            666654321   112 1234444455433   3566774 555444433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.02  Score=41.89  Aligned_cols=121  Identities=10%  Similarity=0.009  Sum_probs=78.6

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-CCcc--
Q 031461           16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-EPLN--   92 (159)
Q Consensus        16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~--   92 (159)
                      .+-..+-.|++.+|...+.+.++-.|.+-               .++...-.+++-+|....-...+++++.. +|+-  
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDl---------------la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~  173 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDL---------------LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC  173 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhh---------------hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH
Confidence            34456777888888888888888766642               22333344555677777777777777765 4433  


Q ss_pred             -HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           93 -VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIF  151 (159)
Q Consensus        93 -~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (159)
                       ....-..+..+...|-|++|.+.-.++++++|.|.=+.....-+...-.+.++....++
T Consensus       174 ~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~  233 (491)
T KOG2610|consen  174 YSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY  233 (491)
T ss_pred             HHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence             33333455667777888888888888888888776666666666666666655554444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.13  E-value=0.037  Score=37.30  Aligned_cols=96  Identities=15%  Similarity=0.047  Sum_probs=77.9

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+..+++..|..+++-.|....++..+..|.-...             ...+..|.++.-+|.+.+|...|+.++...|
T Consensus       125 a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p-------------d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp  191 (251)
T COG4700         125 AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP-------------DGHLLFARTLAAQGKYADAESAFEVAISYYP  191 (251)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC-------------CchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence            456778888899999999999999988886532211             1157788999999999999999999999998


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                       .+.+-++.+..+.++|+.++|...+..+.
T Consensus       192 -g~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         192 -GPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             -CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence             56667888999999999999877766554

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.13  E-value=0.00071  Score=51.36  Aligned_cols=93  Identities=12%  Similarity=0.033  Sum_probs=71.0

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHH-Hhcc--cCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAK-IIEF--HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ...|.++|+.|.|..++.+|.+|+. .+..  ..-......+..+.-...+++|.|..++..|++-.|.++|.++.....
T Consensus       287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh  366 (696)
T KOG2471|consen  287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH  366 (696)
T ss_pred             cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence            5678999999999999999999996 2211  110000112222223355689999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhh
Q 031461           91 LNVKALYRRSQAHLKT  106 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~  106 (159)
                      .+|..|+++++|....
T Consensus       367 ~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  367 RNPRLWLRLAECCIMA  382 (696)
T ss_pred             cCcHHHHHHHHHHHHH
Confidence            9999999999987643

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.07  E-value=0.0073  Score=35.89  Aligned_cols=65  Identities=17%  Similarity=0.170  Sum_probs=47.3

Q ss_pred             HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           19 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        19 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ...+.|+|..|++.+.+.++..........      ......+..++|.++...|++++|+..+++++++.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            456889999999999999988654332210      11223456778888888888888888888888764

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.04  E-value=0.024  Score=48.35  Aligned_cols=112  Identities=15%  Similarity=0.157  Sum_probs=85.3

Q ss_pred             hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc--cHH
Q 031461           17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL--NVK   94 (159)
Q Consensus        17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~   94 (159)
                      ...|-..+.+++|.++|+.-++-....               ..+|...|...+...+-+.|...+.+|+..-|.  +..
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~---------------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQT---------------RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcch---------------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence            334444555566666666555544321               455888888888888889999999999998887  788


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      ..-..|+.-++.|+-+.+...|+-.+.-+|.-...|..+.......+..
T Consensus      1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred             HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCH
Confidence            8888899999999999999999999999998888888887776655443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.01  E-value=0.052  Score=39.78  Aligned_cols=116  Identities=19%  Similarity=0.117  Sum_probs=81.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHH-HhcccCCCC------------------hHHHHHHHHHHHHHHhhHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAK-IIEFHHSFT------------------DDEKHQANGLRLSCYLNNAACKL   70 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~a~~~~   70 (159)
                      .....+.+...+..|+..+|+......+. .........                  .............++..+|....
T Consensus       184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~  263 (352)
T PF02259_consen  184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD  263 (352)
T ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence            34556677777888888888888887777 222110000                  01123344566677888888888


Q ss_pred             hh------hCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCH-----------------HHHHHHHHHHHhcCCC
Q 031461           71 KL------EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL-----------------EKAEADIKRALTIDPN  125 (159)
Q Consensus        71 ~~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-----------------~~A~~~~~~al~~~p~  125 (159)
                      ..      +.++++...|..++.++|.+.++++..|..+...-+.                 ..|+..|-+++...|.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            87      8999999999999999999999999988877655322                 2277778888877776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.99  E-value=0.061  Score=41.24  Aligned_cols=103  Identities=13%  Similarity=0.189  Sum_probs=83.7

Q ss_pred             HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461           21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS  100 (159)
Q Consensus        21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (159)
                      -.++++..|-..|.+||+.+..+               .+++...+.+-++.++.-.|...+++|+.+-|.-...||...
T Consensus        84 esq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~  148 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI  148 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence            45677778888888888875444               556889999999999999999999999999999999999998


Q ss_pred             HHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461          101 QAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus       101 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      ..-..+|+..-|.+.|++=+...|+. .++...-+...+
T Consensus       149 ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElR  186 (677)
T KOG1915|consen  149 YMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELR  186 (677)
T ss_pred             HHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHH
Confidence            88899999999999999999999964 444444444433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.95  E-value=0.031  Score=43.10  Aligned_cols=68  Identities=10%  Similarity=0.053  Sum_probs=57.1

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  128 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  128 (159)
                      .+...|..+...|+.++|+..+++++...+..    .-+++.+|-++..+++|++|..+|.+....+.-.+.
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka  340 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA  340 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence            36788999999999999999999998654433    456888999999999999999999999987654433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.94  E-value=0.082  Score=37.91  Aligned_cols=112  Identities=18%  Similarity=0.170  Sum_probs=79.4

Q ss_pred             HHHcccHHHHHHHHHHHHHHhc-ccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHHhhc----CC---
Q 031461           20 LFRAGKYWRASKKYEKAAKIIE-FHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLEL----EP---   90 (159)
Q Consensus        20 ~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~----~~---   90 (159)
                      +.++|+++.|..+|.++-...+ .+|..        -.....++++.|......+ +++.|..+++++..+    .+   
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~--------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~   74 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM--------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK   74 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHH--------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence            4678999999999999988863 22221        1334667899999999999 999999999999877    21   


Q ss_pred             c-------cHHHHHHHHHHHHhhCCHHH---HHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           91 L-------NVKALYRRSQAHLKTSELEK---AEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        91 ~-------~~~~~~~~~~~~~~~~~~~~---A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      .       ....+..++.+|...+.++.   |....+.+..-.|+.+.+....-++...
T Consensus        75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~  133 (278)
T PF08631_consen   75 LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK  133 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc
Confidence            1       14567778888988887665   4444444555578777776444444333

It is also involved in sporulation [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.92  E-value=0.037  Score=36.16  Aligned_cols=82  Identities=12%  Similarity=0.046  Sum_probs=63.0

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      +..+..+-...++.+++...+.-.-.+.|..+..-..-|.++...|+|.+|+..|+.+....|..+-+...+.-|...++
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            44555556667788888888877777888888888888888888888888888888888888888877777777775554


Q ss_pred             HH
Q 031461          142 EY  143 (159)
Q Consensus       142 ~~  143 (159)
                      ..
T Consensus        93 D~   94 (160)
T PF09613_consen   93 DP   94 (160)
T ss_pred             Ch
Confidence            33

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.89  E-value=0.00031  Score=50.83  Aligned_cols=78  Identities=19%  Similarity=0.172  Sum_probs=67.6

Q ss_pred             HHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           66 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        66 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      +.-.+..|.++.|+..|..+|.++|.....+-.++.++..++....|+.+|..++.++|+...-....+..+..++.-
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence            333456889999999999999999999999999999999999999999999999999999877666666666665544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.87  E-value=0.054  Score=38.79  Aligned_cols=102  Identities=14%  Similarity=0.046  Sum_probs=77.2

Q ss_pred             hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHH-----HHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEK-----HQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      |......+++..+...+..    .+..++....+|     ....+....++..++..+...+.++.+...+++.+..+|-
T Consensus       110 ~~~~~~~~~~~~~~~~~~~----g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~  185 (280)
T COG3629         110 GLKARAGLRFEQAGELLSE----GPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPY  185 (280)
T ss_pred             ccchhhhHHHHHHHHHhhc----CCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc
Confidence            3333444455555555543    122222222333     3356777888999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      +-..|..+-.+|...|+...|+..|++.-..
T Consensus       186 ~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         186 DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             chHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            9999999999999999999999999887653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.87  E-value=0.0025  Score=31.37  Aligned_cols=29  Identities=28%  Similarity=0.233  Sum_probs=20.6

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .++.++|.++..+|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34677777777777777777777777654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.84  E-value=0.063  Score=35.11  Aligned_cols=114  Identities=9%  Similarity=-0.065  Sum_probs=85.5

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+.+...+....++.+++-..+.-.-.+.|..+..               -..-|..++..|+|.+|+..++.+..-
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~---------------~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPEL---------------DLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHH---------------HHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            45667788888889999999998887777776765443               567788899999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      .|..+.+--.++.|++.+++.+  ...+-...--.+.++.+......+..+
T Consensus        74 ~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evle~~~d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen   74 APGFPYAKALLALCLYALGDPS--WRRYADEVLESGADPDARALVRALLAR  122 (160)
T ss_pred             CCCChHHHHHHHHHHHHcCChH--HHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence            9999998899999999999873  333332222233366666666655443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.79  E-value=0.029  Score=43.03  Aligned_cols=106  Identities=18%  Similarity=0.191  Sum_probs=59.2

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-CCcc
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-EPLN   92 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~   92 (159)
                      +..|..+.+.|+.++||+.|...++..|....             ..+..++..+++.++.|.++...+.+==.+ -|.+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------------l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS  329 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------------LNIRENLIEALLELQAYADVQALLAKYDDISLPKS  329 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------------hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence            44566667777777777777777766543211             345667777777777777776665553222 1344


Q ss_pred             HHHHHHHHHHHHh-hCC---------------HHHHHHHHHHHHhcCCCcHHHHHH
Q 031461           93 VKALYRRSQAHLK-TSE---------------LEKAEADIKRALTIDPNNRVVKLV  132 (159)
Q Consensus        93 ~~~~~~~~~~~~~-~~~---------------~~~A~~~~~~al~~~p~~~~~~~~  132 (159)
                      +...|..+.+..+ .++               -..|++.+.+|++.+|.-+.....
T Consensus       330 Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe  385 (539)
T PF04184_consen  330 ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE  385 (539)
T ss_pred             HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence            4444444433222 111               123566677777777766544433

The molecular function of this protein is uncertain.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.77  E-value=0.15  Score=38.88  Aligned_cols=77  Identities=8%  Similarity=0.055  Sum_probs=60.6

Q ss_pred             HHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHH
Q 031461           65 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI-DPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        65 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~  142 (159)
                      =|...+..|+|.++..+..=..+++| ++.++.-+|.|+....+|++|..++...--- .-.|..+++.+.-|++.+.+
T Consensus       468 DAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lCqKh~~k  545 (549)
T PF07079_consen  468 DAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALALCQKHLPK  545 (549)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhhhh
Confidence            35556789999999999999999999 9999999999999999999999888754221 11235677777777766544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.73  E-value=0.04  Score=44.89  Aligned_cols=97  Identities=19%  Similarity=0.056  Sum_probs=74.1

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHH
Q 031461           16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA   95 (159)
Q Consensus        16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~   95 (159)
                      .|...++.|++++|..+.+ ++...+.+   +           ..++..+-.||..++++++|..+|+++++.+|. -.-
T Consensus        49 kaLsl~r~gk~~ea~~~Le-~~~~~~~~---D-----------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eel  112 (932)
T KOG2053|consen   49 KALSLFRLGKGDEALKLLE-ALYGLKGT---D-----------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EEL  112 (932)
T ss_pred             HHHHHHHhcCchhHHHHHh-hhccCCCC---c-----------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHH
Confidence            4778899999999995554 33322211   1           234677889999999999999999999999998 888


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461           96 LYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  128 (159)
Q Consensus        96 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  128 (159)
                      ++.+-.+|.+-++|.+-.+.--+..+..|.++-
T Consensus       113 l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y  145 (932)
T KOG2053|consen  113 LYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY  145 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            888999999999998865555555556777753

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.71  E-value=0.029  Score=46.59  Aligned_cols=117  Identities=9%  Similarity=-0.026  Sum_probs=85.0

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-------hhCHHHHHHHHHHH
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-------LEDYSETSSLCTKV   85 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~A~~~~~~a   85 (159)
                      +....+.+...+.|+.|+..|++.-.-.|.-..-            ..+.+.+|.+.+.       ...+++|+.-|++.
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (932)
T PRK13184        478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEG------------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL  545 (932)
T ss_pred             cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc------------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence            4455677788899999999999988877754332            1223444444333       23577777776553


Q ss_pred             hhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           86 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                       .-.|.-|--|+..|.+|..+|+|++-+++|.-|++..|.+|.+......+-.++.+
T Consensus       546 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (932)
T PRK13184        546 -HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE  601 (932)
T ss_pred             -cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence             33455666788899999999999999999999999999999888777776655543

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.68  E-value=0.075  Score=40.26  Aligned_cols=120  Identities=20%  Similarity=0.265  Sum_probs=73.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh--C-----HHHHHHHH
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE--D-----YSETSSLC   82 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~-----~~~A~~~~   82 (159)
                      .......|-.++..|++.+|+..|+.+|...+-....+..+..+..++...+...+--+.+.+.  .     .++..+.+
T Consensus       204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~l  283 (422)
T PF06957_consen  204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNL  283 (422)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence            3445668999999999999999999999998766555556666666666655432222222221  1     22222222


Q ss_pred             HHH-----hhcCCccHHHHHHHHH-HHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461           83 TKV-----LELEPLNVKALYRRSQ-AHLKTSELEKAEADIKRALTIDPNNRVV  129 (159)
Q Consensus        83 ~~a-----l~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~  129 (159)
                      +-+     .++.|.+..--++.|. ..++.++|.-|-.+.++.|.+.|....+
T Consensus       284 ELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a  336 (422)
T PF06957_consen  284 ELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA  336 (422)
T ss_dssp             HHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence            222     2445666555566665 4588999999999999999999987543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.65  E-value=0.03  Score=35.52  Aligned_cols=74  Identities=24%  Similarity=0.214  Sum_probs=54.0

Q ss_pred             HHHHhhhHHHHcc---cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461           12 RKKHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus        12 ~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      ..+..+..+....   +..+.|.++...++-  ..|.-           ...+.+.+|..+.++++|+.++.+++..+..
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~-----------rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~  100 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPER-----------RRECLYYLAVGHYRLKEYSKSLRYVDALLET  100 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCccc-----------chhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence            3455566665543   467788888877761  12211           2455778999999999999999999999999


Q ss_pred             CCccHHHHHH
Q 031461           89 EPLNVKALYR   98 (159)
Q Consensus        89 ~~~~~~~~~~   98 (159)
                      +|+|..+.-.
T Consensus       101 e~~n~Qa~~L  110 (149)
T KOG3364|consen  101 EPNNRQALEL  110 (149)
T ss_pred             CCCcHHHHHH
Confidence            9999887543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.65  E-value=0.035  Score=38.26  Aligned_cols=85  Identities=15%  Similarity=0.059  Sum_probs=54.9

Q ss_pred             HHHHHHHHhhhHHHHcccHHH-------HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461            8 EACERKKHDGNLLFRAGKYWR-------ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS   80 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~-------A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   80 (159)
                      ..+..+...|+.+-..|+.+.       |+..|.+++..... |....+        ...+.+.+|..+.++|++++|..
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~-~~~~~~--------~~~l~YLigeL~rrlg~~~eA~~  186 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF-PIEGMD--------EATLLYLIGELNRRLGNYDEAKR  186 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC-CCCCch--------HHHHHHHHHHHHHHhCCHHHHHH
Confidence            456667777777777777544       45555555443222 111111        14467899999999999999999


Q ss_pred             HHHHHhhcCCccH-HHHHHHHH
Q 031461           81 LCTKVLELEPLNV-KALYRRSQ  101 (159)
Q Consensus        81 ~~~~al~~~~~~~-~~~~~~~~  101 (159)
                      ++.+++.....+. ..+..+|.
T Consensus       187 ~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  187 WFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHcCCCCCCcHHHHHHHH
Confidence            9999998764443 44555543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.021  Score=41.86  Aligned_cols=90  Identities=9%  Similarity=-0.017  Sum_probs=66.5

Q ss_pred             hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHH
Q 031461           18 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALY   97 (159)
Q Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   97 (159)
                      ..+|..|+...-...+.+++-.-..+.           +...-+..-.+.+....|-|++|.+..+++++++|.+..+..
T Consensus       145 ~a~fy~G~~~~~k~ai~kIip~wn~dl-----------p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H  213 (491)
T KOG2610|consen  145 DAHFYNGNQIGKKNAIEKIIPKWNADL-----------PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH  213 (491)
T ss_pred             hHHHhccchhhhhhHHHHhccccCCCC-----------cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence            345666777777777776665421111           112333445678888999999999999999999999999988


Q ss_pred             HHHHHHHhhCCHHHHHHHHHH
Q 031461           98 RRSQAHLKTSELEKAEADIKR  118 (159)
Q Consensus        98 ~~~~~~~~~~~~~~A~~~~~~  118 (159)
                      ..+-++...|++.+++++.++
T Consensus       214 a~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  214 AKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHHHHHhcchhhhHHHHHHh
Confidence            888888888888888776654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.49  E-value=0.21  Score=36.63  Aligned_cols=126  Identities=17%  Similarity=0.089  Sum_probs=95.1

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..+......+..+.+.|.++.|...+.++....+.....           ...+....+......|+..+|+..++..+.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            346678888999999999999999999988865332211           133466778888889999999998888876


Q ss_pred             cC----------------------------------CccHHHHHHHHHHHHhh------CCHHHHHHHHHHHHhcCCCcH
Q 031461           88 LE----------------------------------PLNVKALYRRSQAHLKT------SELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        88 ~~----------------------------------~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~p~~~  127 (159)
                      ..                                  ...+++++.+|.-....      +..+++...|..+..+.|+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence            10                                  01255677777777777      889999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 031461          128 VVKLVYMELKDKQREYA  144 (159)
Q Consensus       128 ~~~~~~~~~~~~~~~~~  144 (159)
                      .++...+.....+-...
T Consensus       293 k~~~~~a~~~~~~~~~~  309 (352)
T PF02259_consen  293 KAWHSWALFNDKLLESD  309 (352)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            88888887776654433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.45  E-value=0.0054  Score=42.37  Aligned_cols=59  Identities=19%  Similarity=0.301  Sum_probs=52.8

Q ss_pred             HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461           19 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN   92 (159)
Q Consensus        19 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~   92 (159)
                      ...+.++.+.|.+.|.+++.+.|.+               ...|..+|....+.|+++.|...+++.++++|.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w---------------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEW---------------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchh---------------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            4567899999999999999998875               3449999999999999999999999999999876

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.44  E-value=0.0091  Score=29.24  Aligned_cols=30  Identities=27%  Similarity=0.209  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           93 VKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      +.++.++|.+|...|++++|...+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            457889999999999999999999999765

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.36  E-value=0.0089  Score=29.19  Aligned_cols=29  Identities=24%  Similarity=0.304  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           94 KALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      .++..+|++....++|++|+..|.+++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46778888888888999999888888765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.34  E-value=0.095  Score=31.07  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=44.7

Q ss_pred             HhhhhCHHHHHHHHHHHhhcC----C-----ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461           69 KLKLEDYSETSSLCTKVLELE----P-----LNVKALYRRSQAHLKTSELEKAEADIKRALTIDP  124 (159)
Q Consensus        69 ~~~~~~~~~A~~~~~~al~~~----~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  124 (159)
                      ....|+|..|+..+.+.....    .     ....+++++|.++...|++++|+..+++++.+..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            357889999977777766432    2     1357889999999999999999999999988854

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=96.23  E-value=0.023  Score=27.37  Aligned_cols=33  Identities=15%  Similarity=0.113  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHH--HHHHHhcCCCc
Q 031461           94 KALYRRSQAHLKTSELEKAEAD--IKRALTIDPNN  126 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~A~~~--~~~al~~~p~~  126 (159)
                      +.++..|-.++..|++++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4566777777888888888877  33666666653

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.23  E-value=0.29  Score=42.31  Aligned_cols=78  Identities=22%  Similarity=0.133  Sum_probs=66.3

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELK  137 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~  137 (159)
                      .+|..+.-+|.+.+.+++|.+.++..++..-+....|...|..+...++-+.|...+.+|+..-|.  +..+....+.+.
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            457788889999999999999999999887788999999999999999999999999999999998  344444444433

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.057  Score=42.72  Aligned_cols=76  Identities=18%  Similarity=0.176  Sum_probs=63.8

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  133 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  133 (159)
                      .++-|-|.-++++.+|..++++|...++.-|.+      ++....++.||..+.+.|.|++.++.|-+.+|.++-.+...
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            344567788899999999999999999876654      77888899999999999999999999999999887655544


Q ss_pred             HH
Q 031461          134 ME  135 (159)
Q Consensus       134 ~~  135 (159)
                      -.
T Consensus       435 ~~  436 (872)
T KOG4814|consen  435 LQ  436 (872)
T ss_pred             HH
Confidence            43

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=96.11  E-value=0.17  Score=36.50  Aligned_cols=92  Identities=14%  Similarity=0.098  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHhcc------cCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 031461           28 RASKKYEKAAKIIEF------HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ  101 (159)
Q Consensus        28 ~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  101 (159)
                      ..++.+.+.+.....      +.++-++...-+..+...++.-.+..|...|.+.+|.+.+++++.++|-+...+..+-.
T Consensus       242 ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~  321 (361)
T COG3947         242 LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMA  321 (361)
T ss_pred             cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence            445555555555422      22233345556777788888888999999999999999999999999999999999999


Q ss_pred             HHHhhCCHHHHHHHHHHH
Q 031461          102 AHLKTSELEKAEADIKRA  119 (159)
Q Consensus       102 ~~~~~~~~~~A~~~~~~a  119 (159)
                      ++...|+--++++.|++.
T Consensus       322 ~la~~gD~is~~khyery  339 (361)
T COG3947         322 SLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHhccchhhhhHHHHH
Confidence            999999988888777665

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.07  E-value=0.013  Score=42.35  Aligned_cols=78  Identities=18%  Similarity=0.299  Sum_probs=66.5

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHH-HHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ-AHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      ..|...+....+.|.|.+--..|.++++..|.+.+.|..-+. =+...++++.+...|.++++++|++|.++...-+++
T Consensus       108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~E  186 (435)
T COG5191         108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRME  186 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHH
Confidence            346677777788889999999999999999999998887443 478889999999999999999999999887766654

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=0.48  Score=36.62  Aligned_cols=100  Identities=22%  Similarity=0.251  Sum_probs=76.7

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+.-.|..+..-+.|+.|-..|..|++....            .++...+-.|+|..|...++-+.-.+..+.   +
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i  430 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAEDLYKALDL---I  430 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHHHHHHHHh---c
Confidence            3566777888889999999999999999987433            255677788999999998776554333332   3


Q ss_pred             CCcc----------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461           89 EPLN----------VKALYRRSQAHLKTSELEKAEADIKRALTID  123 (159)
Q Consensus        89 ~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  123 (159)
                      .|.+          ..++|-.|...+..+++.+|...+.+.++..
T Consensus       431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            3332          5567888999999999999999999999886

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.98  E-value=0.44  Score=36.84  Aligned_cols=96  Identities=16%  Similarity=0.068  Sum_probs=71.3

Q ss_pred             cHHHHHHHHHHHHHHhcccCCCChHHH----------HHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc--c
Q 031461           25 KYWRASKKYEKAAKIIEFHHSFTDDEK----------HQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL--N   92 (159)
Q Consensus        25 ~~~~A~~~~~~al~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~   92 (159)
                      -..+|..+|+++++.....-..+....          ........-+-..+|.|..++|+.++|++.+...++..|.  +
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~  294 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN  294 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence            468899999999987654322211000          0011122334568999999999999999999999998775  5


Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           93 VKALYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      .....++..++..++.|.++...+.+.=
T Consensus       295 l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  295 LNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            7789999999999999999988888864

The molecular function of this protein is uncertain.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.90  E-value=0.31  Score=33.04  Aligned_cols=139  Identities=11%  Similarity=0.082  Sum_probs=87.4

Q ss_pred             hhhHHHHcccHH---HHHHHHHHHHHHhcccCCCChHHHHH-H-----HHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461           16 DGNLLFRAGKYW---RASKKYEKAAKIIEFHHSFTDDEKHQ-A-----NGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus        16 ~g~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      .|..+++..+.+   +|-..|.++++......+........ .     ..+-....+.+|..+...+++++|+..++.++
T Consensus        37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l  116 (207)
T COG2976          37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL  116 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            366677665554   78888999998765333221111111 1     11222235567888899999999999999999


Q ss_pred             hcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461           87 ELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus        87 ~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (159)
                      ..-.+.   +-+-++++.+...+|.+++|+..+.....-. =.+......+.+....++..+. +..|.+..+
T Consensus       117 ~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~A-r~ay~kAl~  187 (207)
T COG2976         117 AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEA-RAAYEKALE  187 (207)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHH-HHHHHHHHH
Confidence            654432   5567889999999999999998876432110 0133455566666655555443 446665544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.89  E-value=0.13  Score=36.51  Aligned_cols=78  Identities=14%  Similarity=-0.038  Sum_probs=65.3

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ......=..+...++++.|...-.+.+.++|.++..               ...+|.+|..+|.+.-|+.++...++..|
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~e---------------irDrGliY~ql~c~~vAl~dl~~~~~~~P  246 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYE---------------IRDRGLIYAQLGCYHVALEDLSYFVEHCP  246 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhh---------------ccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence            334444456778899999999999999999887643               67899999999999999999999999999


Q ss_pred             ccHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAH  103 (159)
Q Consensus        91 ~~~~~~~~~~~~~  103 (159)
                      +.+.+..-++...
T Consensus       247 ~~~~a~~ir~~l~  259 (269)
T COG2912         247 DDPIAEMIRAQLL  259 (269)
T ss_pred             CchHHHHHHHHHH
Confidence            9988877666554

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.73  E-value=0.82  Score=36.64  Aligned_cols=120  Identities=14%  Similarity=0.119  Sum_probs=85.8

Q ss_pred             HHHHHHHHhhhHHH-HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            8 EACERKKHDGNLLF-RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         8 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ..+......|.+++ ...+++.|..+..+++.+... +..        .+++..+-..++.++.+.+... |...+++.|
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~--------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I  126 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL--------TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI  126 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch--------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence            35778888999998 778999999999999999766 333        3455666667788888888777 999999999


Q ss_pred             hcCCc----cHHHHHHHHH--HHHhhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH
Q 031461           87 ELEPL----NVKALYRRSQ--AHLKTSELEKAEADIKRALTID--PNNRVVKLVYMELK  137 (159)
Q Consensus        87 ~~~~~----~~~~~~~~~~--~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~  137 (159)
                      .....    .....+++-.  .+...+++..|+..++......  +.++.+.-...-+.
T Consensus       127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~  185 (608)
T PF10345_consen  127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE  185 (608)
T ss_pred             HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence            86544    2333333332  2223379999999999988776  46666554444433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=95.71  E-value=0.18  Score=38.12  Aligned_cols=134  Identities=16%  Similarity=0.155  Sum_probs=76.8

Q ss_pred             hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHH
Q 031461           17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL   96 (159)
Q Consensus        17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   96 (159)
                      -.++.-.|+|..|++.... +++....      -.....+-..++++-.|-+|+.+++|.+|+..|..++-.-......+
T Consensus       129 lRvh~LLGDY~~Alk~l~~-idl~~~~------l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~  201 (404)
T PF10255_consen  129 LRVHCLLGDYYQALKVLEN-IDLNKKG------LYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQY  201 (404)
T ss_pred             HHHHHhccCHHHHHHHhhc-cCcccch------hhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3566777899998887653 2221110      00111122456799999999999999999999998874322111111


Q ss_pred             HHH-HHHHHhhCCHHHHHHHHHHHHhcCCC--cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Q 031461           97 YRR-SQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYM-ELKDKQREYAKYQAEIFGTMLSK  157 (159)
Q Consensus        97 ~~~-~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  157 (159)
                      ... .+.-.-.+..++....+--++.+.|.  +..+...+. +...++.+-...+...|..+|..
T Consensus       202 ~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~  266 (404)
T PF10255_consen  202 HQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSF  266 (404)
T ss_pred             ccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHh
Confidence            111 11112223445555556666777785  444444443 34455555555567788888864

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.63  E-value=0.11  Score=39.07  Aligned_cols=97  Identities=14%  Similarity=0.103  Sum_probs=76.2

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--   89 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--   89 (159)
                      .+.+.|.-|...|+.+.|+.+|.++-+...+....            ...+.|.-.+..-+|+|..-..+..++...-  
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khv------------Inm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~  219 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHV------------INMCLNLILVSIYMGNWGHVLSYISKAESTPDA  219 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHH------------HHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence            46778999999999999999999977776554322            4557788888889999999999999988762  


Q ss_pred             --C----ccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           90 --P----LNVKALYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        90 --~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                        .    -.++..+.-|.+...++.|..|.+.|-.+.
T Consensus       220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence              1    125566778888888999999998886653

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.61  E-value=0.33  Score=34.21  Aligned_cols=87  Identities=15%  Similarity=0.021  Sum_probs=62.6

Q ss_pred             cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC--c----cHHHHHH
Q 031461           25 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP--L----NVKALYR   98 (159)
Q Consensus        25 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~----~~~~~~~   98 (159)
                      .....|+++.+|+.........         .+...+...+|.-|+..|+|++|+.+++.+....-  .    ....+..
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~---------R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~  223 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQN---------RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWR  223 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            3455677777777766544332         44455677899999999999999999999965532  2    2566777


Q ss_pred             HHHHHHhhCCHHHHHHHHHHHH
Q 031461           99 RSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        99 ~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      +..|...+|+.+..+...-+.+
T Consensus       224 l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  224 LLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHh
Confidence            8889999999988877655443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.52  E-value=0.031  Score=27.25  Aligned_cols=31  Identities=26%  Similarity=0.333  Sum_probs=27.6

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIE   41 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   41 (159)
                      +.+..+|.+....++|++|+.-|.+|+.+..
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQE   32 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            4677899999999999999999999999854

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.52  E-value=0.24  Score=29.14  Aligned_cols=66  Identities=15%  Similarity=-0.049  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc--HHHHHHHHHHHHhh
Q 031461           29 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN--VKALYRRSQAHLKT  106 (159)
Q Consensus        29 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~  106 (159)
                      .+..+.+.+..+|.+               ..+.+.+|..+...|++++|+..+-.+++.++++  ..+--.+-.++..+
T Consensus         7 ~~~al~~~~a~~P~D---------------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l   71 (90)
T PF14561_consen    7 DIAALEAALAANPDD---------------LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL   71 (90)
T ss_dssp             HHHHHHHHHHHSTT----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence            345567777776665               4458899999999999999999999999999877  33334444444444


Q ss_pred             CCH
Q 031461          107 SEL  109 (159)
Q Consensus       107 ~~~  109 (159)
                      |.-
T Consensus        72 g~~   74 (90)
T PF14561_consen   72 GPG   74 (90)
T ss_dssp             -TT
T ss_pred             CCC
Confidence            443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.48  E-value=0.028  Score=24.80  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHH
Q 031461           94 KALYRRSQAHLKTSELEKAEADIK  117 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~A~~~~~  117 (159)
                      .+.+.+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345566666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.85  Score=34.51  Aligned_cols=70  Identities=14%  Similarity=0.055  Sum_probs=58.0

Q ss_pred             HHHHHhhHHHHHhhhhCHHHHHHHHHHHh----hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461           58 RLSCYLNNAACKLKLEDYSETSSLCTKVL----ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      ...+.+.+=.+|+..+.|+.|.....++.    ..+..++..+|+.|.+..-.++|..|.+++-.|+...|.+.
T Consensus       208 qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  208 QAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            34556677788899999999988777665    22345688999999999999999999999999999999753

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.33  E-value=0.44  Score=30.88  Aligned_cols=80  Identities=9%  Similarity=0.000  Sum_probs=57.4

Q ss_pred             hHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           64 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        64 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      .+..+.....+++++...+...-.+.|..+..-..-|-++...|+|.+|+..++......|..+-....+.-|...++..
T Consensus        15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            33334444777777777777777778888888888888888888888888888887777777676666666666555443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.31  E-value=0.16  Score=35.98  Aligned_cols=62  Identities=15%  Similarity=0.028  Sum_probs=50.1

Q ss_pred             HHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           78 TSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        78 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      |..+|..|+.+.|++-..+..+|.+....|+.=.|+=+|-+++......+.+...+..+..+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999986654456676666666655

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.31  E-value=0.38  Score=30.03  Aligned_cols=75  Identities=15%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      +-.+--++..+...|+|++++..-.++|.+...-.....++    -.++..+.+++|.....+|..++|+..|+.+-.+
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde----GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE----GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc----chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            44455566777889999999999999999987655544332    2456778899999999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.21  E-value=0.34  Score=37.07  Aligned_cols=61  Identities=18%  Similarity=0.211  Sum_probs=52.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      ....+.+.|.-.|.+|+|.+++-+-....++.|+                ..+|..+|.|.+..++|++|..++...
T Consensus       461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS----------------~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS----------------PQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc----------------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            3566778889999999999999999999999773                355899999999999999999998654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.20  E-value=0.49  Score=30.67  Aligned_cols=85  Identities=6%  Similarity=-0.062  Sum_probs=66.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+.+........++++++-....-.=.+.|..+..               -..-|..++..|+|++|+..++.+....
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~---------------d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKEL---------------DMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcccc---------------chhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            3445555566666888888877776655566666554               4566788899999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCH
Q 031461           90 PLNVKALYRRSQAHLKTSEL  109 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~  109 (159)
                      +..+.+--.++.|++.+||.
T Consensus        75 ~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        75 GAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             CCchHHHHHHHHHHHhcCCh
Confidence            88888888899999999876

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.99  E-value=0.67  Score=38.41  Aligned_cols=127  Identities=18%  Similarity=0.226  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-------hhCHHHH-
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-------LEDYSET-   78 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~A-   78 (159)
                      +.....-.+.|-.....|.+.+|+++|+.+|-..|-....+..+....+++...+...+.-....       ......+ 
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence            34456667789999999999999999999998877554444455555555555543222222211       1223333 


Q ss_pred             -HHHHHHHhhcCCcc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461           79 -SSLCTKVLELEPLN-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  133 (159)
Q Consensus        79 -~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  133 (159)
                       +..|=.-..+.|-+ +-++..--..+++++++..|.....+.+++.|..+.+....
T Consensus      1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~r 1124 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQAR 1124 (1202)
T ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHH
Confidence             11111223445554 34444444478999999999999999999999876654433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.87  E-value=1.2  Score=33.41  Aligned_cols=111  Identities=14%  Similarity=0.103  Sum_probs=75.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC--CC-------Ch-----HH-HHHHHHHHHHHHhhHHHHHhhhhC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH--SF-------TD-----DE-KHQANGLRLSCYLNNAACKLKLED   74 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~-------~~-----~~-~~~~~~~~~~~~~~~a~~~~~~~~   74 (159)
                      ++.+.+.+.++..+|++..|.++.++|+-.....-  ..       +.     +. ..+.-++ ..+.........+.|.
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~f-flal~r~i~~L~~RG~  118 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQF-FLALFRYIQSLGRRGC  118 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHH-HHHHHHHHHHHHhcCc
Confidence            56788999999999999999999999987654211  11       00     00 1111222 2234455566778999


Q ss_pred             HHHHHHHHHHHhhcCCc-cHHHHHHHHHHH-HhhCCHHHHHHHHHHHHh
Q 031461           75 YSETSSLCTKVLELEPL-NVKALYRRSQAH-LKTSELEKAEADIKRALT  121 (159)
Q Consensus        75 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~  121 (159)
                      +..|+++|+-.+.+||. ++-+....-+.| .+.++|+--+..++....
T Consensus       119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            99999999999999998 666655555544 666777766666665544

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.86  E-value=0.16  Score=36.02  Aligned_cols=62  Identities=16%  Similarity=0.047  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHh
Q 031461           29 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK  105 (159)
Q Consensus        29 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  105 (159)
                      |..+|.+|+.+.|..+..               |+.+|..+...|+.-.|+-+|-+++-.....+.+.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p---------------~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNP---------------YNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHH---------------HHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCc---------------ccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            688999999999987644               99999999999999999999999998776678888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=94.72  E-value=0.41  Score=33.38  Aligned_cols=118  Identities=15%  Similarity=0.039  Sum_probs=68.2

Q ss_pred             HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCH-HHH-HHHHHHHhh-cC-Ccc--HH
Q 031461           21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY-SET-SSLCTKVLE-LE-PLN--VK   94 (159)
Q Consensus        21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A-~~~~~~al~-~~-~~~--~~   94 (159)
                      |..|+|+.|++...-+|...-..|+.   .......+...-...-+......|.. +-. ...+..+.. .+ |+.  ++
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~---f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAK  170 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGLTMPDQ---FRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAK  170 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCCCCCcc---ccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHH
Confidence            67799999999999999985443321   11111122222233344444455542 111 111222211 11 343  44


Q ss_pred             HHHHHHHHHH---------hhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           95 ALYRRSQAHL---------KTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        95 ~~~~~~~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      .+-..|..+.         ..++...|+..+++|+.++|. ..+...+.++..+++.
T Consensus       171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~  226 (230)
T PHA02537        171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKA  226 (230)
T ss_pred             HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhh
Confidence            4555666663         456788999999999999985 5677777777777653

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.70  E-value=0.52  Score=33.23  Aligned_cols=68  Identities=21%  Similarity=0.140  Sum_probs=51.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      .....+.|..++..|+|+.|+.+|..+.......+=         ..+...+...+..|+..+|+.+..+..+-+.+
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW---------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW---------WSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            345668899999999999999999999665443221         13345667788899999999999888775544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.34  E-value=2.3  Score=34.31  Aligned_cols=124  Identities=12%  Similarity=0.144  Sum_probs=90.2

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC---CCh---HHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS---FTD---DEKHQANGLRLSCYLNNAACKLKLEDYSETSSL   81 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~   81 (159)
                      +.+....+.|..-....+++.|+.+...|... |..+.   +++   .+......  ..+|.-.+..--..|-++.....
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrS--lkiWs~y~DleEs~gtfestk~v  499 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRS--LKIWSMYADLEESLGTFESTKAV  499 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHh--HHHHHHHHHHHHHhccHHHHHHH
Confidence            45677777888888889999999988888764 33322   111   11111112  23466667777788899999999


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Q 031461           82 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID--PNNRVVKLVYM  134 (159)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~  134 (159)
                      |+++|.+.--.|....+.|..+....-|++|.+.|++.+.+.  |.-..++...-
T Consensus       500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL  554 (835)
T KOG2047|consen  500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL  554 (835)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence            999999988889999999999999999999999999998885  44455555443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=94.31  E-value=0.82  Score=31.78  Aligned_cols=60  Identities=20%  Similarity=0.195  Sum_probs=55.3

Q ss_pred             HhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461           69 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  128 (159)
Q Consensus        69 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  128 (159)
                      .++.+...+|+.....-++-+|.+...-..+-+.+.-.|+|++|...++-+-.+.|+...
T Consensus        11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455          11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            467788999999999999999999999999999999999999999999999999998743

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=94.31  E-value=2.3  Score=34.20  Aligned_cols=105  Identities=21%  Similarity=0.087  Sum_probs=78.1

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------CCCh----HHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH-------SFTD----DEKHQANGLRLSCYLNNAACKLKLEDYSETSSL   81 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~   81 (159)
                      +.--|......+..+.|.+++.++++......       ..+-    +...-...+...+....+.+.+-+++|..|...
T Consensus       304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~  383 (608)
T PF10345_consen  304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE  383 (608)
T ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            33346777777878899999999998765422       1111    122334556666777888899999999999999


Q ss_pred             HHHHhhcC---C------ccHHHHHHHHHHHHhhCCHHHHHHHHH
Q 031461           82 CTKVLELE---P------LNVKALYRRSQAHLKTSELEKAEADIK  117 (159)
Q Consensus        82 ~~~al~~~---~------~~~~~~~~~~~~~~~~~~~~~A~~~~~  117 (159)
                      ...+....   |      ..+..++-.|..+...|+.+.|...|.
T Consensus       384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            88877553   2      247788999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=94.30  E-value=0.36  Score=31.02  Aligned_cols=53  Identities=15%  Similarity=0.209  Sum_probs=38.8

Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  144 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  144 (159)
                      -....+..+...+..|++.-|......++..+|+|..++.....+..+++...
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            44566777888888888888888888888888888888888888887776654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.29  E-value=0.4  Score=39.56  Aligned_cols=109  Identities=15%  Similarity=0.005  Sum_probs=71.8

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHh-------cccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHH
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKII-------EFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK   84 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   84 (159)
                      .+...+..+-..++.+.|+++|+++-...       ..+|..-+-..  ...-...+|..-|......|+.+.|+.+|..
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv--~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV--RRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH--HhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            35556666667778888888887653321       11111100000  0000124567778888889999999998887


Q ss_pred             Hhhc---------------------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           85 VLEL---------------------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        85 al~~---------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      |-..                     ...+..+-|.+|..|...|++.+|+.+|.+|...
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            7422                     2456778899999999999999999999887544

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=94.26  E-value=0.3  Score=24.63  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=12.3

Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHH
Q 031461           98 RRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        98 ~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      .+|.+|...|+.+.|...++.++
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHH
Confidence            44555555555555555555555

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.24  E-value=2  Score=33.40  Aligned_cols=102  Identities=21%  Similarity=0.183  Sum_probs=81.1

Q ss_pred             HHHHHHHHhhhHHH-HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHH
Q 031461            8 EACERKKHDGNLLF-RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKV   85 (159)
Q Consensus         8 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a   85 (159)
                      ..+....+.|...+ ...+++.|....+++..+...-|...        +.....+..++.+|.... .+..|...+.++
T Consensus        44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--------dvKf~a~SlLa~lh~~~~~s~~~~KalLrka  115 (629)
T KOG2300|consen   44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--------DVKFQAASLLAHLHHQLAQSFPPAKALLRKA  115 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            34666777776664 67899999999999999987766552        445667888999998888 899999999999


Q ss_pred             hhcCCcc----HHHHHHHHHHHHhhCCHHHHHHHHH
Q 031461           86 LELEPLN----VKALYRRSQAHLKTSELEKAEADIK  117 (159)
Q Consensus        86 l~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~  117 (159)
                      |++....    .+..+.+++.+.-..++..|++.+.
T Consensus       116 ielsq~~p~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen  116 IELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             HHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence            9987654    4556778999999999999987753

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.14  E-value=0.92  Score=33.93  Aligned_cols=99  Identities=14%  Similarity=-0.010  Sum_probs=75.8

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcc-cCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC-
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEF-HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP-   90 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-   90 (159)
                      +........++|.|..|+++.+-.+.++|. ||-              -+.+-+-...++.++|+-=+..++....... 
T Consensus       106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~--------------g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~  171 (360)
T PF04910_consen  106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL--------------GVLLFIDYYALRSRQYQWLIDFSESPLAKCYR  171 (360)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc--------------hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh
Confidence            344456667899999999999999999887 442              2355666667778888877777777655211 


Q ss_pred             ----ccHHHHHHHHHHHHhhCCH---------------HHHHHHHHHHHhcCCC
Q 031461           91 ----LNVKALYRRSQAHLKTSEL---------------EKAEADIKRALTIDPN  125 (159)
Q Consensus        91 ----~~~~~~~~~~~~~~~~~~~---------------~~A~~~~~~al~~~p~  125 (159)
                          .-|...+..+.+++..++-               +.|...+.+|+...|.
T Consensus       172 ~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  172 NWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             hhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence                1356788899999999998               8999999999988874

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=94.06  E-value=0.15  Score=38.52  Aligned_cols=61  Identities=13%  Similarity=0.127  Sum_probs=48.5

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHh--------hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVL--------ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al--------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      ...+..++..+|+|..|++.++.+=        +.-+-+...+|..|-+|.-+++|.+|++.|..++..
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466778889999999999876541        112345778999999999999999999999988643

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.99  E-value=1.8  Score=31.83  Aligned_cols=64  Identities=16%  Similarity=0.150  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           74 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        74 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      -.+..+..+++|++.+|++...++.+=.+.....+-++..+-+++++..+|++...+..+-...
T Consensus        46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~  109 (321)
T PF08424_consen   46 LAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFR  109 (321)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            3567788999999999999999999888899999999999999999999999877766655543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.81  E-value=1.3  Score=33.22  Aligned_cols=65  Identities=17%  Similarity=0.109  Sum_probs=51.4

Q ss_pred             HhhHHHHHhh---hhCHHHHHHHHHHHh-hcCCccHHHHHHHHHHHHhh---------CCHHHHHHHHHHHHhcCCCc
Q 031461           62 YLNNAACKLK---LEDYSETSSLCTKVL-ELEPLNVKALYRRSQAHLKT---------SELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        62 ~~~~a~~~~~---~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~p~~  126 (159)
                      -...|.+.-.   .|+.++|+..+..++ ...+.+++.+...|.+|-..         ...++|+.+|.++..++|+.
T Consensus       182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            4455666666   899999999999954 55677899999999887544         25788999999999999764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=93.75  E-value=3  Score=33.65  Aligned_cols=124  Identities=13%  Similarity=0.185  Sum_probs=90.4

Q ss_pred             HHHcccHHHHHHHHHHHHHHh-cccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc----HH
Q 031461           20 LFRAGKYWRASKKYEKAAKII-EFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN----VK   94 (159)
Q Consensus        20 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~   94 (159)
                      -+..|++.+-+.-|..|+.-. |..+.-.          ...++...|..|...|+.+.|...++++.+..-..    +.
T Consensus       357 ~l~e~~~~~~i~tyteAv~~vdP~ka~Gs----------~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~  426 (835)
T KOG2047|consen  357 KLYEGNAAEQINTYTEAVKTVDPKKAVGS----------PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAE  426 (835)
T ss_pred             hhhcCChHHHHHHHHHHHHccCcccCCCC----------hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHH
Confidence            355677888888898888754 3322211          25678999999999999999999999999886433    77


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461           95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNN-------------------RVVKLVYMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus        95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                      .|+.-|..-....+++.|+...++|..+ |.+                   ..++..+..+.+..+-.+.. +..|.+++
T Consensus       427 vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest-k~vYdrii  504 (835)
T KOG2047|consen  427 VWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST-KAVYDRII  504 (835)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH-HHHHHHHH
Confidence            8999999999999999999999998755 222                   33556666666666655444 33555554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.73  E-value=0.29  Score=33.32  Aligned_cols=61  Identities=11%  Similarity=0.046  Sum_probs=47.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL   81 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~   81 (159)
                      .++.....|..| ...+...|+..+.+++++.+.+..++           ..++..+|.++.++|+++.|--+
T Consensus       140 t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n-----------~eil~sLas~~~~~~~~e~AYiw  200 (203)
T PF11207_consen  140 TAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFN-----------PEILKSLASIYQKLKNYEQAYIW  200 (203)
T ss_pred             CHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHHhcchhhhhhh
Confidence            355566666555 47899999999999999987664443           56689999999999999988543

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.67  E-value=0.72  Score=26.19  Aligned_cols=32  Identities=16%  Similarity=0.181  Sum_probs=24.0

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKII   40 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   40 (159)
                      .+..+..++..+=+.|++.+|+.+|+++++..
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L   36 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVL   36 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            45566677777778888888888888877764

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.58  E-value=3  Score=33.12  Aligned_cols=92  Identities=22%  Similarity=0.124  Sum_probs=69.8

Q ss_pred             HHHhhhHHHHcc-----cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh---CHHHHHHHHHH
Q 031461           13 KKHDGNLLFRAG-----KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTK   84 (159)
Q Consensus        13 ~~~~g~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~   84 (159)
                      ....|..|.+..     ++..|+.+|.++-.....+                 ..+.+|.++..-.   ++..|..+|..
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~-----------------a~~~lg~~~~~g~~~~d~~~A~~yy~~  353 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD-----------------AQYLLGVLYETGTKERDYRRAFEYYSL  353 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch-----------------HHHHHHHHHHcCCccccHHHHHHHHHH
Confidence            445677776642     7888999999988864322                 2678888877655   67899999988


Q ss_pred             HhhcCCccHHHHHHHHHHHHhh----CCHHHHHHHHHHHHhcC
Q 031461           85 VLELEPLNVKALYRRSQAHLKT----SELEKAEADIKRALTID  123 (159)
Q Consensus        85 al~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~  123 (159)
                      |....  ++.+.+++|.||..=    -+...|..++.++-...
T Consensus       354 Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  354 AAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            87765  688889999988643    48888999999998777

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=93.55  E-value=0.18  Score=25.46  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=24.8

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      .+++|..|..+|+++.|...+++++...
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            3689999999999999999999999543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.54  E-value=0.14  Score=22.49  Aligned_cols=23  Identities=26%  Similarity=0.138  Sum_probs=20.3

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCT   83 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~   83 (159)
                      +..++|..+...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            36789999999999999998775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.47  E-value=0.42  Score=22.94  Aligned_cols=31  Identities=19%  Similarity=0.118  Sum_probs=23.3

Q ss_pred             HHHHHhhhHHHHcccHHHHHHH--HHHHHHHhc
Q 031461           11 ERKKHDGNLLFRAGKYWRASKK--YEKAAKIIE   41 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~--~~~al~~~~   41 (159)
                      +-+...|-.++.+|++++|+..  |.-+..+++
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            3456778999999999999999  547666644

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=93.15  E-value=2.7  Score=34.94  Aligned_cols=92  Identities=10%  Similarity=0.012  Sum_probs=73.4

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..++..--.|.+....|+++.|.+..+.++...|.+...+          +..++..+|.+..-.|++++|..+...+.+
T Consensus       456 l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~----------r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~  525 (894)
T COG2909         456 LLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS----------RIVALSVLGEAAHIRGELTQALALMQQAEQ  525 (894)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh----------hhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence            3455555678889999999999999999999988765443          467789999999999999999999999887


Q ss_pred             cC----C--ccHHHHHHHHHHHHhhCCH
Q 031461           88 LE----P--LNVKALYRRSQAHLKTSEL  109 (159)
Q Consensus        88 ~~----~--~~~~~~~~~~~~~~~~~~~  109 (159)
                      +.    .  -...+.+..+.++..+|+.
T Consensus       526 ~a~~~~~~~l~~~~~~~~s~il~~qGq~  553 (894)
T COG2909         526 MARQHDVYHLALWSLLQQSEILEAQGQV  553 (894)
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHhhHH
Confidence            63    2  2355667788899999943

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=93.14  E-value=1  Score=36.60  Aligned_cols=51  Identities=18%  Similarity=0.188  Sum_probs=32.1

Q ss_pred             hHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 031461           64 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR  118 (159)
Q Consensus        64 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  118 (159)
                      +...|+..+.+|++    ++...+.-|++.+.+=.+|+.+...|--++|++.|-+
T Consensus       827 ~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  827 NQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             hHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            44455555555554    2222333477777777788888888888888777654

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=93.03  E-value=0.47  Score=26.25  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=28.7

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE   41 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   41 (159)
                      ..+-.+...|..+=+.|+|.+|+.+|..++...-
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~   36 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLM   36 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            4566777888888899999999999999999753

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.81  E-value=3.4  Score=31.45  Aligned_cols=61  Identities=20%  Similarity=0.228  Sum_probs=51.9

Q ss_pred             hhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461           72 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  133 (159)
Q Consensus        72 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  133 (159)
                      .-+...|..+..+++++.|+-..+-..-+.+++..|+..++-..++.+-+.+|. +.+...+
T Consensus       242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY  302 (531)
T COG3898         242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLY  302 (531)
T ss_pred             cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHH
Confidence            446888999999999999999999999999999999999999999999999885 4444433

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=92.59  E-value=1.5  Score=29.54  Aligned_cols=54  Identities=19%  Similarity=0.168  Sum_probs=45.8

Q ss_pred             hhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           72 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        72 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      .......++..++.++..| ++..+.+++.++..+|+.++|.....++..+.|.+
T Consensus       124 ~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  124 PEMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence            3345566677777888888 88889999999999999999999999999999944

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=92.57  E-value=2.9  Score=33.20  Aligned_cols=78  Identities=18%  Similarity=0.029  Sum_probs=54.6

Q ss_pred             HHHHhhHHHHHhhhhC-HHHHHHHHHHHhhcCCccHHHHHHH------HHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHH
Q 031461           59 LSCYLNNAACKLKLED-YSETSSLCTKVLELEPLNVKALYRR------SQAHLKTSELEKAEADIKRALTIDPNNRVVKL  131 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  131 (159)
                      ..++.++|......|. +.-+..+++.+....|.+..+...+      |.....+|+..++.....++..+.|.++.+..
T Consensus       101 ~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~  180 (620)
T COG3914         101 CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLG  180 (620)
T ss_pred             chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence            4557777777666664 4444555555888888886665555      77778888888888888888888888866555


Q ss_pred             HHHHH
Q 031461          132 VYMEL  136 (159)
Q Consensus       132 ~~~~~  136 (159)
                      .+.-.
T Consensus       181 ~~~~~  185 (620)
T COG3914         181 ALMTA  185 (620)
T ss_pred             HHHHH
Confidence            44443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.40  E-value=3.2  Score=32.99  Aligned_cols=99  Identities=17%  Similarity=0.009  Sum_probs=67.8

Q ss_pred             HHHHhhhHHHH-----cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-----CHHHHHHH
Q 031461           12 RKKHDGNLLFR-----AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-----DYSETSSL   81 (159)
Q Consensus        12 ~~~~~g~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~A~~~   81 (159)
                      .....|.+++.     .++.+.|+.+|..+..-.....          ......+.+.+|.+|....     ++..|+.+
T Consensus       246 a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a----------~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~  315 (552)
T KOG1550|consen  246 AQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA----------TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKL  315 (552)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH----------hhcCCccccHHHHHHhcCCCCccccHHHHHHH
Confidence            34445555543     3689999999999887200000          0001223778999988843     67889999


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhc
Q 031461           82 CTKVLELEPLNVKALYRRSQAHLKTS---ELEKAEADIKRALTI  122 (159)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~  122 (159)
                      +.++-.+.  ++.+.+.+|.++..-.   ++..|..+|..|-..
T Consensus       316 ~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~  357 (552)
T KOG1550|consen  316 YTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA  357 (552)
T ss_pred             HHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc
Confidence            98887776  6778899999987665   678899999888644

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.28  E-value=1  Score=32.56  Aligned_cols=56  Identities=25%  Similarity=0.331  Sum_probs=48.3

Q ss_pred             hhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 031461           63 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR  118 (159)
Q Consensus        63 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  118 (159)
                      ..-+.-....|++.+|...+..++...|.+..+...++.||...|+.+.|...+..
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            34455667899999999999999999999999999999999999999887665543

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=92.02  E-value=4.2  Score=30.73  Aligned_cols=66  Identities=17%  Similarity=0.103  Sum_probs=44.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHH--HHHhhhhCHHHHHHHHHHHh
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA--ACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~A~~~~~~al   86 (159)
                      .+......+..+|+.++|..|...+...+...+....             ...+..++  ..+...-++.+|...++..+
T Consensus       130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~  196 (379)
T PF09670_consen  130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE-------------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL  196 (379)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3566778888999999999999999998875222111             12233443  34455667888888887655


Q ss_pred             h
Q 031461           87 E   87 (159)
Q Consensus        87 ~   87 (159)
                      .
T Consensus       197 ~  197 (379)
T PF09670_consen  197 K  197 (379)
T ss_pred             H
Confidence            3

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.02  E-value=1.1  Score=30.59  Aligned_cols=73  Identities=14%  Similarity=0.037  Sum_probs=41.0

Q ss_pred             hhhhCHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHHHH
Q 031461           70 LKLEDYSETSSLCTKVLELE-PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN----NRVVKLVYMELKDKQREY  143 (159)
Q Consensus        70 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~  143 (159)
                      .....-+.|..-|-.+=... -+++...+.+|-.|. ..+-++|+..+.+++.+.+.    |+++...++.+...++..
T Consensus       117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            33333444555443332221 134555555555444 67777788888888777543    367777777776665554

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.95  E-value=0.56  Score=26.63  Aligned_cols=35  Identities=14%  Similarity=-0.063  Sum_probs=29.0

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   42 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~   42 (159)
                      ..+..+...|...=..|+|++|+.+|..+++..-.
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            34666777888888999999999999999998654

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.93  E-value=0.53  Score=26.72  Aligned_cols=35  Identities=14%  Similarity=-0.056  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE   41 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   41 (159)
                      +..+..+...|...-..|+|++|+.+|..+++..-
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~   37 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFV   37 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            45677788888888999999999999999999754

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=91.79  E-value=4.3  Score=32.26  Aligned_cols=72  Identities=19%  Similarity=0.027  Sum_probs=59.7

Q ss_pred             HHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHH-HHhcCCCcHHHHHHHHHH
Q 031461           65 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR-ALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        65 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~~~~  136 (159)
                      ++......+....+......++..+|.+..+..++|.+....|..-.+...+.. +....|.+..+...+-.+
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  145 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRF  145 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHH
Confidence            677777888998899999999999999999999999998878877776666555 899999998877777333

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.76  E-value=4.5  Score=34.64  Aligned_cols=105  Identities=13%  Similarity=0.106  Sum_probs=79.5

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC--
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP--   90 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--   90 (159)
                      +...|+.+|..+.|+.|.-+|..+-.                       |..+|.+...+|+|..|....++|-....  
T Consensus      1197 i~~vGdrcf~~~~y~aAkl~y~~vSN-----------------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVSN-----------------------FAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence            45679999999999999999975322                       77888888889999999888877632210  


Q ss_pred             -----------------------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           91 -----------------------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        91 -----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                                             -+++-+-.+...|...|-|++-+..++-++.++..+-.....++.+..+.
T Consensus      1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred             HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence                                   11333444666788889999999999999999988888777777776544

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.47  E-value=1.6  Score=24.84  Aligned_cols=33  Identities=18%  Similarity=0.141  Sum_probs=28.5

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE   41 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   41 (159)
                      .+..+...|..+=+.|+|++|+.+|..+++..-
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~   37 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLI   37 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            466777888899999999999999999999754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.41  E-value=2  Score=35.80  Aligned_cols=77  Identities=13%  Similarity=0.034  Sum_probs=53.7

Q ss_pred             hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHH
Q 031461           18 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALY   97 (159)
Q Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   97 (159)
                      ..+.+.|-.++|..+|.++-+.                       -.+-..|...|.|.+|.+..+.-=++.-  -..||
T Consensus       808 vLAieLgMlEeA~~lYr~ckR~-----------------------DLlNKlyQs~g~w~eA~eiAE~~DRiHL--r~Tyy  862 (1416)
T KOG3617|consen  808 VLAIELGMLEEALILYRQCKRY-----------------------DLLNKLYQSQGMWSEAFEIAETKDRIHL--RNTYY  862 (1416)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH-----------------------HHHHHHHHhcccHHHHHHHHhhccceeh--hhhHH
Confidence            3445666777777777766553                       2334456777888888777655433332  34678


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHH
Q 031461           98 RRSQAHLKTSELEKAEADIKRA  119 (159)
Q Consensus        98 ~~~~~~~~~~~~~~A~~~~~~a  119 (159)
                      +.+.-+...++.+.|+.+|+++
T Consensus       863 ~yA~~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  863 NYAKYLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             HHHHHHHhhccHHHHHHHHHhc
Confidence            8999999999999999999876

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.39  E-value=0.72  Score=26.31  Aligned_cols=33  Identities=15%  Similarity=0.203  Sum_probs=28.2

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE   41 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   41 (159)
                      .+..+...|..+=+.|+|++|+.+|.++|+..-
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~   37 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLM   37 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            456677788889999999999999999999754

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=91.38  E-value=2.2  Score=26.20  Aligned_cols=72  Identities=8%  Similarity=0.019  Sum_probs=54.6

Q ss_pred             HHHHHhhhhCHHHHHHHHHHHhhcCCccH---HHHHHHHHHHHhhCC-----------HHHHHHHHHHHHhcCCCcHHHH
Q 031461           65 NAACKLKLEDYSETSSLCTKVLELEPLNV---KALYRRSQAHLKTSE-----------LEKAEADIKRALTIDPNNRVVK  130 (159)
Q Consensus        65 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~  130 (159)
                      +|.-++..|++-+|++..+..+...+.+.   -.+...|.++..+..           .-.|+++|.++..+.|......
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            45677889999999999999998876664   455667888876652           3348999999999999886555


Q ss_pred             HHHHHH
Q 031461          131 LVYMEL  136 (159)
Q Consensus       131 ~~~~~~  136 (159)
                      ..++.-
T Consensus        82 ~~la~~   87 (111)
T PF04781_consen   82 FELASQ   87 (111)
T ss_pred             HHHHHH
Confidence            555544

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.36  E-value=2.3  Score=33.18  Aligned_cols=93  Identities=12%  Similarity=0.021  Sum_probs=49.5

Q ss_pred             HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHH
Q 031461           20 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRR   99 (159)
Q Consensus        20 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   99 (159)
                      .+..|+.-.|-.-...++.-.|.+|..               ....+.++..+|.|+.+...+.-+-..-.....+..-+
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~---------------i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~  363 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVL---------------IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCR  363 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchh---------------hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHH
Confidence            345566666666666666665555442               34556666667777777666554433322233333333


Q ss_pred             HHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461          100 SQAHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus       100 ~~~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      -...+.+|++++|...-.-.+.-+-+++
T Consensus       364 ~r~~~~l~r~~~a~s~a~~~l~~eie~~  391 (831)
T PRK15180        364 LRSLHGLARWREALSTAEMMLSNEIEDE  391 (831)
T ss_pred             HHhhhchhhHHHHHHHHHHHhccccCCh
Confidence            3445556666666555544444433333

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.25  E-value=2.9  Score=29.97  Aligned_cols=71  Identities=18%  Similarity=0.127  Sum_probs=39.2

Q ss_pred             hhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT-SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        71 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      +...-..|+.....+|.++|.+-..|..+-.++..+ .+..+-+.++..+..-.|.|-.++.....+-+.++
T Consensus        55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~  126 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG  126 (318)
T ss_pred             ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc
Confidence            333445555666666666666555555544444333 34555555666666666666666666555555554

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.21  E-value=0.89  Score=25.69  Aligned_cols=35  Identities=17%  Similarity=0.125  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE   41 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   41 (159)
                      +..+..+...|...=..|+|++|+.+|..+++..-
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~   37 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFM   37 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            34677788888899999999999999999999754

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=91.14  E-value=0.69  Score=20.67  Aligned_cols=27  Identities=19%  Similarity=0.283  Sum_probs=13.8

Q ss_pred             CHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461           74 DYSETSSLCTKVLELEPLNVKALYRRS  100 (159)
Q Consensus        74 ~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (159)
                      +++.|...|++++...|.++..|...+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            344555555555555555555544433

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.94  E-value=1.9  Score=24.74  Aligned_cols=62  Identities=15%  Similarity=-0.013  Sum_probs=42.7

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC------CCChHHHHHHHHHHHHHHhhHHHHH
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH------SFTDDEKHQANGLRLSCYLNNAACK   69 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~   69 (159)
                      +.+-.+.+.|..+=..|+.++|+.+|++++.....-.      ....++|.....+...+-.+++.+-
T Consensus         6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~   73 (79)
T cd02679           6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVK   73 (79)
T ss_pred             HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888889999999999999999864321      2223455555555555555555443

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.92  E-value=4.5  Score=31.79  Aligned_cols=66  Identities=21%  Similarity=0.119  Sum_probs=55.8

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcC-----Cc--cHHHHHHHHHHHHhhCC-HHHHHHHHHHHHhcCCCc
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELE-----PL--NVKALYRRSQAHLKTSE-LEKAEADIKRALTIDPNN  126 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~--~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~  126 (159)
                      -++.+|.+...+|+...|..+++.++...     ..  .|-|+|.+|..+...|. ..++..++.+|.....+.
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            36788999999999999999999988332     11  28899999999999999 999999999998877554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.91  E-value=5.8  Score=30.24  Aligned_cols=90  Identities=13%  Similarity=0.047  Sum_probs=65.8

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHH--HHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA--CKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      .-.+....-.|+|+.|...|+--+.    +|+             ...+..+|.  -...+|..+.|..+.+.+-...|.
T Consensus       124 lLeAQaal~eG~~~~Ar~kfeAMl~----dPE-------------tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~  186 (531)
T COG3898         124 LLEAQAALLEGDYEDARKKFEAMLD----DPE-------------TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ  186 (531)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHhc----ChH-------------HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC
Confidence            3345566677888888887765443    222             111222222  235689999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      -+.++.-.=......|+|+.|++......
T Consensus       187 l~WA~~AtLe~r~~~gdWd~AlkLvd~~~  215 (531)
T COG3898         187 LPWAARATLEARCAAGDWDGALKLVDAQR  215 (531)
T ss_pred             CchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            99999988889999999999999886654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=90.82  E-value=2.6  Score=33.25  Aligned_cols=82  Identities=17%  Similarity=0.127  Sum_probs=68.4

Q ss_pred             HHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           66 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        66 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      |.-.+--+.+..|+..+.++++..|+....+.+++-++...+   +.-.|+.++..+++++|....++..+.++...+.+
T Consensus       381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r  460 (758)
T KOG1310|consen  381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR  460 (758)
T ss_pred             ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence            333344566788999999999999999999999999998875   55568888899999999999999999999988888


Q ss_pred             HHHHH
Q 031461          143 YAKYQ  147 (159)
Q Consensus       143 ~~~~~  147 (159)
                      ..+..
T Consensus       461 ~~eal  465 (758)
T KOG1310|consen  461 YLEAL  465 (758)
T ss_pred             HHHhh
Confidence            76654

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=90.56  E-value=1.4  Score=28.31  Aligned_cols=51  Identities=20%  Similarity=0.152  Sum_probs=41.3

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEK  111 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  111 (159)
                      .....+.-.+..|+|.-|...++.++..+|++..+...++.++.++|.-.+
T Consensus        72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            356777888899999999999999999999999999999999998875544

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.09  E-value=5.1  Score=36.97  Aligned_cols=96  Identities=18%  Similarity=0.222  Sum_probs=59.2

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK   94 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~   94 (159)
                      ..|..-|+.+.|..|+.+++.. .    ..+.+       .......+..+-.+|..+++++.-......-.. +|    
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~----~~ek~-------~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-~~---- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-R----STEKE-------KETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-DP---- 1450 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-c----cccch-------hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-Cc----
Confidence            5678889999999999999875 1    11110       122233355555577777777765555433111 11    


Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461           95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      -+...-..+...|+++.|..+|+++++.+|+++
T Consensus      1451 sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~ 1483 (2382)
T KOG0890|consen 1451 SLYQQILEHEASGNWADAAACYERLIQKDPDKE 1483 (2382)
T ss_pred             cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccc
Confidence            134444556777888888888888888877754

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.93  E-value=4.3  Score=27.13  Aligned_cols=64  Identities=11%  Similarity=0.071  Sum_probs=55.1

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc---cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPL---NVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      ...+..+|..|.+.|+++.|++.|.++......   ....++.+..+....+++........++-.+
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            456889999999999999999999998776532   2777888999999999999999999998665

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.68  E-value=2.2  Score=31.08  Aligned_cols=52  Identities=23%  Similarity=0.144  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           94 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      +.+...+..|...|.+.+|++..++++.++|-+.+....+..+...++....
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is  331 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEIS  331 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchh
Confidence            3445567788999999999999999999999999999999988887766433

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=89.67  E-value=2.8  Score=36.20  Aligned_cols=108  Identities=19%  Similarity=0.132  Sum_probs=82.9

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..++..+..+...+++.+|+..-.++.-+...-...+...       ....|.+++...+..++...|+..+.++..+
T Consensus       972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~-------t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen  972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN-------TKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH-------HHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence            466778889999999999999999888877654322111110       1344888888888999999999999998765


Q ss_pred             C--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461           89 E--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTID  123 (159)
Q Consensus        89 ~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  123 (159)
                      .        |..+-...+++.++...++++-|+.+.+.|+...
T Consensus      1045 ~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1045 KLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             hccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3        4455566788889999999999999999998753

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=89.62  E-value=11  Score=31.54  Aligned_cols=107  Identities=18%  Similarity=0.050  Sum_probs=80.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      .+...-.+.......++.+|-.+..++....+......      ...+....--..|.+....+++++|...++.++..=
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~------~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L  488 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR------QGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQL  488 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc------hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence            34455667888889999999999888877755421111      112333444566777788999999999999999876


Q ss_pred             Ccc-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           90 PLN-----VKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        90 ~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      |.+     +.++...|.+..-.|++++|......+.+.
T Consensus       489 ~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~  526 (894)
T COG2909         489 PEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM  526 (894)
T ss_pred             ccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence            644     667888999999999999999999888777

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.51  E-value=7.7  Score=32.99  Aligned_cols=66  Identities=23%  Similarity=0.192  Sum_probs=49.0

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHH-------HHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL-------YRRSQAHLKTSELEKAEADIKRALTIDPNNRVV  129 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  129 (159)
                      |+.-|.+|..+|+|++-++++.-|++..|.+|...       +++-++.+..  ...|....--++...|.....
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  627 (932)
T PRK13184        555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISS  627 (932)
T ss_pred             HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccc
Confidence            88899999999999999999999999999886643       3344433332  334666666778888876443

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=89.43  E-value=1.6  Score=24.66  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE   41 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   41 (159)
                      ...+..+...|..+=..|++++|+.+|..+++..-
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~   39 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLL   39 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            34566677788888889999999999999999754

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.37  E-value=1.6  Score=24.54  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=28.0

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE   41 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   41 (159)
                      ..+..+...|...=..|+|++|+.+|..+++..-
T Consensus         4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~   37 (75)
T cd02656           4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLL   37 (75)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3456677788888888999999999999999754

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=89.08  E-value=1.5  Score=34.13  Aligned_cols=94  Identities=19%  Similarity=0.144  Sum_probs=64.5

Q ss_pred             hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHH
Q 031461           17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL   96 (159)
Q Consensus        17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   96 (159)
                      +.+.-..|+|+.|......+-.......               ++...+-....+++.+++|.....-.+.-.-.+++..
T Consensus       330 ~~i~~~lg~ye~~~~~~s~~~~~~~s~~---------------~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~  394 (831)
T PRK15180        330 SVIFSHLGYYEQAYQDISDVEKIIGTTD---------------STLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVL  394 (831)
T ss_pred             HHHHHHhhhHHHHHHHhhchhhhhcCCc---------------hHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhhe
Confidence            3444556777777777665555433211               1233444556788999999988888777666666666


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461           97 YRRSQAHLKTSELEKAEADIKRALTIDPN  125 (159)
Q Consensus        97 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~  125 (159)
                      .--+-.--++|-+++|.-.+++++.++|.
T Consensus       395 ~iaa~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        395 TVAAGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             eeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence            55666677888899999999999988774

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=89.04  E-value=6.2  Score=28.84  Aligned_cols=26  Identities=12%  Similarity=0.055  Sum_probs=21.5

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHH
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKI   39 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~   39 (159)
                      .+.++...+.+++++|+..|...+..
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~k   32 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGK   32 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence            56778888889999999999887764

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=89.02  E-value=7.4  Score=29.01  Aligned_cols=75  Identities=17%  Similarity=0.089  Sum_probs=58.1

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLEL--EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      -.|++....+..-.+.++...+-...-  -..+.-++--+|..+.++|...+|...|.+++.+.++..+.......+
T Consensus       332 ~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~  408 (415)
T COG4941         332 TLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL  408 (415)
T ss_pred             eehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            468888877777788887777666544  234566677799999999999999999999999999887665554443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=88.96  E-value=4.3  Score=31.76  Aligned_cols=62  Identities=11%  Similarity=0.143  Sum_probs=47.5

Q ss_pred             HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhC-HHHHHHHHHHHhhcCCccHHHHHH
Q 031461           22 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED-YSETSSLCTKVLELEPLNVKALYR   98 (159)
Q Consensus        22 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~   98 (159)
                      +.+.|.+--..|.+++...|++++.               |...|.-.+.-+. ++.|...+.++|+.+|+++..|..
T Consensus       117 k~~~~~~v~ki~~~~l~~Hp~~~dL---------------WI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  117 KKKTYGEVKKIFAAMLAKHPNNPDL---------------WIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             HhcchhHHHHHHHHHHHhCCCCchh---------------HHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence            4445888888999999998887654               5555555555554 999999999999999999776543

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=88.92  E-value=1.3  Score=19.72  Aligned_cols=30  Identities=30%  Similarity=0.383  Sum_probs=25.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461          107 SELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus       107 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      |+.+.|...|++++...|.++.++......
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            567889999999999999888888776654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=88.82  E-value=6.6  Score=28.90  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=47.9

Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHhhCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           80 SLCTKVLELEPLNVKALYRRSQAHLKTSE------------LEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        80 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      .-+++.++-+|.++.+|+.+...--..-.            .+.-+..|++|++.+|++......+-.+..++-
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~   79 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW   79 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            45788899999999999998876544432            455678899999999999888777777665553

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.75  E-value=10  Score=30.27  Aligned_cols=114  Identities=18%  Similarity=0.135  Sum_probs=77.0

Q ss_pred             cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc--------------
Q 031461           23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL--------------   88 (159)
Q Consensus        23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------   88 (159)
                      ...|++|...|.-++...+.+...   ......++....+..+|.++..+|+.+.|....+++|=.              
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~---~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg  327 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVL---ILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG  327 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCccee---eeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence            456888888887777764432110   011112445666889999999999998888877777611              


Q ss_pred             -------CCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Q 031461           89 -------EPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPN-NRVVKLVYMELKDK  139 (159)
Q Consensus        89 -------~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~  139 (159)
                             .|.|   --++++.-..+.+.|.+.-|..+++-.++++|. ||-+...+-.+...
T Consensus       328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL  389 (665)
T KOG2422|consen  328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL  389 (665)
T ss_pred             cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH
Confidence                   1333   234555666778889999999999999999998 87655555555433

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=88.22  E-value=3.3  Score=29.06  Aligned_cols=55  Identities=24%  Similarity=0.259  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHhh
Q 031461           26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLE   87 (159)
Q Consensus        26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~   87 (159)
                      .+.|...|++|+.+.....+.+       .+++..+.+|.+..+.. +|+.++|...++.++.
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~-------~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPT-------HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTT-------SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCC-------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4788999999999877632221       26677778888877644 8999999998888764

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.16  E-value=1.9  Score=24.44  Aligned_cols=35  Identities=14%  Similarity=0.019  Sum_probs=28.8

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   42 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~   42 (159)
                      ..+-.+...|...=..|+|++|+.+|..+++..-.
T Consensus         4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~   38 (75)
T cd02677           4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            45666777888888889999999999999998543

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=87.90  E-value=11  Score=29.14  Aligned_cols=51  Identities=12%  Similarity=0.152  Sum_probs=46.6

Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 031461           98 RRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA  148 (159)
Q Consensus        98 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~  148 (159)
                      .+..||.++++-+-|+....+.+.++|.....+...+.|.+.+.++.+.-+
T Consensus       233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar  283 (569)
T PF15015_consen  233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR  283 (569)
T ss_pred             HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999999999999999999999887654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.77  E-value=4.4  Score=29.26  Aligned_cols=65  Identities=17%  Similarity=0.214  Sum_probs=53.4

Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (159)
                      ....++..++..+...|+++.++..+++.+..+|-+..++..+.......+..... ...|.++-+
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~a-i~~y~~l~~  215 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAA-IRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHH-HHHHHHHHH
Confidence            45778889999999999999999999999999999999998888888776666444 336665543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=87.47  E-value=7.5  Score=33.80  Aligned_cols=106  Identities=15%  Similarity=0.093  Sum_probs=80.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .++...+.|......+.+.+|.. ...++.+..+--       ..+++-....|..++..+..++++++|+.+..++.-+
T Consensus       931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~-------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii 1002 (1236)
T KOG1839|consen  931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM-------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACII 1002 (1236)
T ss_pred             hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh-------hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceee
Confidence            45677888888889999998888 555555544210       0111223677999999999999999999999888644


Q ss_pred             C--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           89 E--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        89 ~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      .        |.....+-+++...+..++...|...+.+++.+
T Consensus      1003 ~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1003 SERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             echhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence            2        556788888998899999999999999888765

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=87.21  E-value=7.8  Score=30.74  Aligned_cols=68  Identities=12%  Similarity=0.134  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461           53 QANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  121 (159)
Q Consensus        53 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  121 (159)
                      +..+.....|+.+-.-+... -+++....+++.+...|.++.+|-.....-...++|+.-...|.+||.
T Consensus        14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV   81 (656)
T ss_pred             hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            33444445555555444333 677777777777777777777777777777777777777777777764

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=87.03  E-value=2.9  Score=30.76  Aligned_cols=69  Identities=6%  Similarity=0.118  Sum_probs=51.7

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhh-HHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLN-NAACKLKLEDYSETSSLCTKVLELEPLNV   93 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~~~~~   93 (159)
                      ..+....+.|-|.+--..|..|+...|.+.+.               |.. .+.-+...+++.-+...+.++++++|++|
T Consensus       112 ~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdl---------------WI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p  176 (435)
T COG5191         112 QYAAYVIKKKMYGEMKNIFAECLTKHPLNVDL---------------WIYCCAFELFEIANIESSRAMFLKGLRMNSRSP  176 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee---------------eeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence            33444456677888888899999988876543               433 44446678899999999999999999998


Q ss_pred             HHHHH
Q 031461           94 KALYR   98 (159)
Q Consensus        94 ~~~~~   98 (159)
                      ..|+.
T Consensus       177 ~iw~e  181 (435)
T COG5191         177 RIWIE  181 (435)
T ss_pred             hHHHH
Confidence            76654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=87.01  E-value=9.1  Score=27.38  Aligned_cols=105  Identities=22%  Similarity=0.042  Sum_probs=71.7

Q ss_pred             HHHHhhhHHHH----cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-------CHHHHHH
Q 031461           12 RKKHDGNLLFR----AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-------DYSETSS   80 (159)
Q Consensus        12 ~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-------~~~~A~~   80 (159)
                      .....|..+..    ..++.+|..+|.++........              ..+..++|.+|..-.       +...|..
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~  176 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKALY  176 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhHHH
Confidence            45566777765    4589999999999998743221              122456666655531       3347888


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           81 LCTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        81 ~~~~al~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      .+.++-...  ++.+.+.+|.+|..    ..++.+|+.+|.++-....  ......+.
T Consensus       177 ~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         177 LYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            888887766  78888888877744    4489999999999988776  44444444

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=86.99  E-value=9.4  Score=27.52  Aligned_cols=104  Identities=13%  Similarity=0.016  Sum_probs=75.6

Q ss_pred             ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461           24 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLELEPLNVKALYRRSQA  102 (159)
Q Consensus        24 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  102 (159)
                      ..-..|+.+-..+|.+.|.+               -+++.-+=.+... +.+..+-+.++.+++.-+|.+-..|..+-.+
T Consensus        57 E~S~RAl~LT~d~i~lNpAn---------------YTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~i  121 (318)
T KOG0530|consen   57 EKSPRALQLTEDAIRLNPAN---------------YTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVI  121 (318)
T ss_pred             ccCHHHHHHHHHHHHhCccc---------------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence            34455666666666665433               2334444444444 4478888999999999999999999999999


Q ss_pred             HHhhCCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461          103 HLKTSELE-KAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus       103 ~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      ..-.|+.. .-+...+.++..+..|-.+++...=+-...+.
T Consensus       122 ve~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~  162 (318)
T KOG0530|consen  122 VELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD  162 (318)
T ss_pred             HHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhh
Confidence            99999888 78889999999999887777766655544443

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=86.46  E-value=6.1  Score=24.80  Aligned_cols=85  Identities=12%  Similarity=0.120  Sum_probs=55.9

Q ss_pred             ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh--cCCccHHHHHHHHH
Q 031461           24 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE--LEPLNVKALYRRSQ  101 (159)
Q Consensus        24 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~  101 (159)
                      +.-..-...+.+|+.....++.+.++      +....++...+.    .-.  .+...|.....  +....+..|...|.
T Consensus        40 ~~~~~L~~lLer~~~~f~~~~~Y~nD------~RylkiWi~ya~----~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~  107 (126)
T PF08311_consen   40 GKQSGLLELLERCIRKFKDDERYKND------ERYLKIWIKYAD----LSS--DPREIFKFLYSKGIGTKLALFYEEWAE  107 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSGGGTT-------HHHHHHHHHHHT----TBS--HHHHHHHHHHHHTTSTTBHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhHhhcCC------HHHHHHHHHHHH----Hcc--CHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence            44455566777777776655443221      223334444433    222  67777777664  55677999999999


Q ss_pred             HHHhhCCHHHHHHHHHHHH
Q 031461          102 AHLKTSELEKAEADIKRAL  120 (159)
Q Consensus       102 ~~~~~~~~~~A~~~~~~al  120 (159)
                      .+...|++++|...|+.++
T Consensus       108 ~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen  108 FLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhC
Confidence            9999999999999998764

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=86.41  E-value=1.4  Score=19.42  Aligned_cols=26  Identities=15%  Similarity=0.211  Sum_probs=16.9

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      |..+-.+|.+.|++++|...+++..+
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhH
Confidence            45555666777777777777666544

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.26  E-value=4.4  Score=23.01  Aligned_cols=19  Identities=11%  Similarity=0.045  Sum_probs=9.3

Q ss_pred             HHHHHHHHHhcCCCcHHHH
Q 031461          112 AEADIKRALTIDPNNRVVK  130 (159)
Q Consensus       112 A~~~~~~al~~~p~~~~~~  130 (159)
                      |++.+.+++...|+++.-.
T Consensus        32 aIe~L~q~~~~~pD~~~k~   50 (75)
T cd02682          32 AIEVLSQIVKNYPDSPTRL   50 (75)
T ss_pred             HHHHHHHHHHhCCChHHHH
Confidence            3333444455567665433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF15469 Sec5: Exocyst complex component Sec5

Probab=86.23  E-value=7.8  Score=25.85  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=20.9

Q ss_pred             HHHHcccHHHHHHHHHHHHHHhccc
Q 031461           19 LLFRAGKYWRASKKYEKAAKIIEFH   43 (159)
Q Consensus        19 ~~~~~~~~~~A~~~~~~al~~~~~~   43 (159)
                      .+...|+|+.++..|.++-.+....
T Consensus        95 ~~i~~~dy~~~i~dY~kak~l~~~~  119 (182)
T PF15469_consen   95 ECIKKGDYDQAINDYKKAKSLFEKY  119 (182)
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHh
Confidence            4568899999999999999886553

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=86.19  E-value=13  Score=28.43  Aligned_cols=102  Identities=12%  Similarity=0.014  Sum_probs=65.4

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCH-------HHHHHHHHH
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY-------SETSSLCTK   84 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~   84 (159)
                      ..+.+|+.+|-.++|+.|...|..+.+-...+..+         -....+.--.|.|.+..+..       +....+++.
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw---------~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~  280 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAW---------KYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLEN  280 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhH---------HHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHH
Confidence            46778999999999999999999888755443221         22233344445555555422       233444444


Q ss_pred             Hhh-----------cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           85 VLE-----------LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        85 al~-----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      ++.           .......+.+..+.++...+.+.+|...+-+....
T Consensus       281 A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~  329 (414)
T PF12739_consen  281 AYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE  329 (414)
T ss_pred             HHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence            332           11234667788888899999988887777666544

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF12854 PPR_1: PPR repeat

Probab=85.40  E-value=2.6  Score=19.62  Aligned_cols=27  Identities=11%  Similarity=0.043  Sum_probs=16.8

Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKR  118 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~  118 (159)
                      +...|-.+-..|.+.|+.++|.+.|.+
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            444555666666777777777666653

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=85.28  E-value=14  Score=27.73  Aligned_cols=99  Identities=21%  Similarity=0.118  Sum_probs=64.6

Q ss_pred             HHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh----cC--CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHH
Q 031461           57 LRLSCYLNNAACKLKLEDYSETSSLCTKVLE----LE--PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  130 (159)
Q Consensus        57 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  130 (159)
                      ++..+-..+...|...++|.+|+......++    ++  +.-...+..-..+|+.+.+..+|...+..|......---..
T Consensus       126 LRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpP  205 (411)
T KOG1463|consen  126 LRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPP  205 (411)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCH
Confidence            3444556778899999999999998877763    33  33377888899999999999999999988865543211112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461          131 LVYMELKDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (159)
                      ...+.+.-+-+-....+ +.|++.|+
T Consensus       206 qlQa~lDLqSGIlha~e-kDykTafS  230 (411)
T KOG1463|consen  206 QLQATLDLQSGILHAAE-KDYKTAFS  230 (411)
T ss_pred             HHHHHHHHhccceeecc-cccchHHH
Confidence            23333333334444444 45555543

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.25  E-value=18  Score=29.06  Aligned_cols=109  Identities=10%  Similarity=0.088  Sum_probs=70.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc--CCCChHHHH--------HHHHHHHHHHhhHHHHHhhhhCHHHHH
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH--HSFTDDEKH--------QANGLRLSCYLNNAACKLKLEDYSETS   79 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~A~   79 (159)
                      ++.+...+..+..+|+.+-|.++..++|-.....  |.+....+.        ..-.+... +..--....+.|.|.-|.
T Consensus       284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~-l~r~m~~l~~RGC~rTA~  362 (665)
T KOG2422|consen  284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLA-LFRYMQSLAQRGCWRTAL  362 (665)
T ss_pred             hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHH-HHHHHHHHHhcCChHHHH
Confidence            5678888888889999999998888888765432  111110000        01111111 222223345789999999


Q ss_pred             HHHHHHhhcCCc-cHHHHHHHHHHH-HhhCCHHHHHHHHHHH
Q 031461           80 SLCTKVLELEPL-NVKALYRRSQAH-LKTSELEKAEADIKRA  119 (159)
Q Consensus        80 ~~~~~al~~~~~-~~~~~~~~~~~~-~~~~~~~~A~~~~~~a  119 (159)
                      ++|.-++.++|. +|-+....-++| ....+|+=-+..++..
T Consensus       363 E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~  404 (665)
T KOG2422|consen  363 EWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP  404 (665)
T ss_pred             HHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999999999998 788777777766 4556666666665554

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=84.49  E-value=5.3  Score=24.98  Aligned_cols=38  Identities=18%  Similarity=0.274  Sum_probs=27.3

Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           97 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        97 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      ..+|+.+...|++++|...|-+|+.+.|.-......+.
T Consensus        67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q  104 (121)
T PF02064_consen   67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQ  104 (121)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            34788888888888888888888888887555444443

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=84.38  E-value=5  Score=22.03  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=10.4

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHH
Q 031461           99 RSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        99 ~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      .|.-.-..|++++|+..|..++
T Consensus        11 ~Av~~D~~g~~~~A~~~Y~~ai   32 (69)
T PF04212_consen   11 KAVEADEAGNYEEALELYKEAI   32 (69)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH
Confidence            3333334555555555554443

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.01  E-value=12  Score=29.06  Aligned_cols=55  Identities=7%  Similarity=0.022  Sum_probs=35.7

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcC--------CccHHHHHHHHHHHHhhCCHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELE--------PLNVKALYRRSQAHLKTSELEKAEAD  115 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~  115 (159)
                      .|..+|...+..|+++-|..+++++-..+        ..+...+-.++..-...|++.-|..+
T Consensus       349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~  411 (443)
T PF04053_consen  349 KWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQA  411 (443)
T ss_dssp             HHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHH
Confidence            58888999999999999998888764322        34455555566665556655555433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=83.92  E-value=4.3  Score=33.30  Aligned_cols=70  Identities=6%  Similarity=0.030  Sum_probs=47.3

Q ss_pred             HHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461           56 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  135 (159)
Q Consensus        56 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  135 (159)
                      +....++.++|..+..+..|++|.++|.+.-.        .-+..+|++.+..|++-    +.+...-|++......++.
T Consensus       793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~  860 (1189)
T KOG2041|consen  793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMAD  860 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHH
Confidence            44566799999999999999999999865432        33566778888887653    3334444666555544444


Q ss_pred             HH
Q 031461          136 LK  137 (159)
Q Consensus       136 ~~  137 (159)
                      +.
T Consensus       861 mf  862 (1189)
T KOG2041|consen  861 MF  862 (1189)
T ss_pred             HH
Confidence            43

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.86  E-value=6  Score=28.71  Aligned_cols=52  Identities=29%  Similarity=0.275  Sum_probs=43.7

Q ss_pred             hhhCHHHHHHHHHHHhhcCCcc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           71 KLEDYSETSSLCTKVLELEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        71 ~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      +..++++|+..|++++.+.+..    -+++-.+..+++.+++|++-...|.+.+..
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY   94 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY   94 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            4458999999999999999764    567888899999999999988888776543

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=83.67  E-value=21  Score=28.58  Aligned_cols=51  Identities=8%  Similarity=0.064  Sum_probs=36.9

Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~  140 (159)
                      ..+...|..+|-.+++.++|.+|+..|-.+-..      ..+|.++.+.+-.|-..+
T Consensus       315 n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAneL  371 (618)
T PF05053_consen  315 NHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIANEL  371 (618)
T ss_dssp             T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHHTH
T ss_pred             CCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHH
Confidence            446777888999999999999999999887544      346777877777766543

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.88  E-value=18  Score=30.36  Aligned_cols=33  Identities=21%  Similarity=0.444  Sum_probs=29.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE   41 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   41 (159)
                      .++.++..|+.+|.+|++++|...|-++|....
T Consensus       367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le  399 (933)
T KOG2114|consen  367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE  399 (933)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence            467789999999999999999999999988643

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=82.36  E-value=24  Score=28.29  Aligned_cols=101  Identities=9%  Similarity=0.038  Sum_probs=60.1

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC-Cc
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-PL   91 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~   91 (159)
                      +..-..--...|+++...-.|..|+--.....               ..|...+.-....|+..-|...+..+.++. |.
T Consensus       300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~---------------efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~  364 (577)
T KOG1258|consen  300 WRYYLDFEITLGDFSRVFILFERCLIPCALYD---------------EFWIKYARWMESSGDVSLANNVLARACKIHVKK  364 (577)
T ss_pred             HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH---------------HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence            33334444577888888888888887544322               224555555555566666665555555543 44


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  128 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  128 (159)
                      .+...+.-+..-...|++..|...++++...-|+...
T Consensus       365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~  401 (577)
T KOG1258|consen  365 TPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVE  401 (577)
T ss_pred             CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhh
Confidence            5555555555566666666666666666655565543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.28  E-value=4.7  Score=29.21  Aligned_cols=54  Identities=11%  Similarity=0.173  Sum_probs=37.8

Q ss_pred             HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461           22 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus        22 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      +...+++|+..|.+++++.+..+.+.           ..++-..-.+.+.+++|++-...+.+.+
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWG-----------FKALKQmiKI~f~l~~~~eMm~~Y~qlL   92 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWG-----------FKALKQMIKINFRLGNYKEMMERYKQLL   92 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhH-----------HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            34589999999999999987766553           3345555556666777776666666654

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=81.71  E-value=5.9  Score=24.05  Aligned_cols=34  Identities=29%  Similarity=0.410  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKI   39 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~   39 (159)
                      +...+......|...+-.|+|..|.+...++-+.
T Consensus        55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~   88 (108)
T PF07219_consen   55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL   88 (108)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            4557888889999999999999999999999765

These are membrane protein involved in a late step of protoheme IX synthesis [].

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.20  E-value=22  Score=27.19  Aligned_cols=78  Identities=15%  Similarity=0.070  Sum_probs=45.7

Q ss_pred             HhhHHHHHhhhh--CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC----CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461           62 YLNNAACKLKLE--DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS----ELEKAEADIKRALTIDPNNRVVKLVYME  135 (159)
Q Consensus        62 ~~~~a~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~~~  135 (159)
                      |+-+..+..+.+  +|..-+..|+++++.||.+-.+|..+-.+.....    ...+-+++..+++.-++.|-+++.....
T Consensus       112 W~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~  191 (421)
T KOG0529|consen  112 WHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSL  191 (421)
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHH
Confidence            555555555444  3566677777777777776555554444333222    2455566666666667777776666666


Q ss_pred             HHHH
Q 031461          136 LKDK  139 (159)
Q Consensus       136 ~~~~  139 (159)
                      +...
T Consensus       192 lL~~  195 (421)
T KOG0529|consen  192 LLST  195 (421)
T ss_pred             HHHH
Confidence            5543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=80.99  E-value=22  Score=26.97  Aligned_cols=83  Identities=11%  Similarity=-0.013  Sum_probs=66.8

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhc----CCccHHHHHHHHHHHHh---hCCHHHHHHHHHH-HHhcCCCcHHHHH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLEL----EPLNVKALYRRSQAHLK---TSELEKAEADIKR-ALTIDPNNRVVKL  131 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~  131 (159)
                      .+..++=.+|....+|+.-+...+..-.+    -+..+...+..|.++-+   .|+.++|+..+.. .....+.+++..-
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            34567777899999999988888777666    34567777888999988   9999999999999 4556778899999


Q ss_pred             HHHHHHHHHHH
Q 031461          132 VYMELKDKQRE  142 (159)
Q Consensus       132 ~~~~~~~~~~~  142 (159)
                      .++.+.+.+-.
T Consensus       222 L~GRIyKD~~~  232 (374)
T PF13281_consen  222 LLGRIYKDLFL  232 (374)
T ss_pred             HHHHHHHHHHH
Confidence            99999987633

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.32  E-value=22  Score=26.49  Aligned_cols=109  Identities=12%  Similarity=0.042  Sum_probs=67.4

Q ss_pred             ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461            2 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL   81 (159)
Q Consensus         2 s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~   81 (159)
                      ||+|.  .+-....++..|-+.++|..|.....- +....       ....-..+....++..+|..|++.++..+|..+
T Consensus        97 sfeEq--v~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~t-------g~~~~d~~~kl~l~iriarlyLe~~d~veae~~  166 (399)
T KOG1497|consen   97 SFEEQ--VASIRLHLASIYEKEQNWRDAAQVLVG-IPLDT-------GQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAY  166 (399)
T ss_pred             cHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHhc-cCccc-------chhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            45553  344456778899999999998776532 22211       111222344556688999999999999999999


Q ss_pred             HHHH--hhcCCccHHHHHHHHHHH----HhhCCHHHHHHHHHHHH
Q 031461           82 CTKV--LELEPLNVKALYRRSQAH----LKTSELEKAEADIKRAL  120 (159)
Q Consensus        82 ~~~a--l~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~al  120 (159)
                      .+++  +..+..|.......-.||    =..++|=+|-+.|.+..
T Consensus       167 inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels  211 (399)
T KOG1497|consen  167 INRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS  211 (399)
T ss_pred             HHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987  333445544444433333    33455656666665543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=80.29  E-value=4.1  Score=18.17  Aligned_cols=26  Identities=23%  Similarity=0.151  Sum_probs=16.1

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      |..+-.++.+.|++++|...+.....
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44455566667777777776666544

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=80.03  E-value=26  Score=27.24  Aligned_cols=79  Identities=23%  Similarity=0.180  Sum_probs=45.9

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..++.+|..+..+|+++.|..+|.++=+                       +..+...|...|+-+.=....+.+.....
T Consensus       348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~  404 (443)
T PF04053_consen  348 EKWKQLGDEALRQGNIELAEECYQKAKD-----------------------FSGLLLLYSSTGDREKLSKLAKIAEERGD  404 (443)
T ss_dssp             HHHHHHHHHHHHTTBHHHHHHHHHHCT------------------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------------------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            4688899999999999999999987544                       44555556666666554444444443333


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIK  117 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~  117 (159)
                      .+.     .-.++.-+|+.++.+..+.
T Consensus       405 ~n~-----af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  405 INI-----AFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             HHH-----HHHHHHHHT-HHHHHHHHH
T ss_pred             HHH-----HHHHHHHcCCHHHHHHHHH
Confidence            221     1223444455555544443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		4e-22
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		5e-21
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		1e-20
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		2e-20
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		1e-16
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		4e-14
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		6e-12
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		6e-11
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-10
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		2e-08
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		5e-08
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-05
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		5e-05
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		1e-04
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		2e-04
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		3e-04

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 78/130 (60%)
Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           M++ EK+E     K  G + F+ GKY +A  +Y+K    +E+  SF+++E  +A  LRL+
Sbjct: 138 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197
Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL+ +S     C K LEL+  N K L+RR +AHL  ++ E A AD ++ L
Sbjct: 198 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVL 257
Query: 121 TIDPNNRVVK 130
            + PNN+  K
Sbjct: 258 QLYPNNKAAK 267

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 81/158 (51%)
Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           MDT EK+E     K  G + F+ GKY +A  +Y K    +E  +  ++ E   +    L+
Sbjct: 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318
Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L
Sbjct: 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378
Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            ++P N+  +L     + K +E+ +    I+  M  K 
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKF 416

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 86/157 (54%)
Query: 2   DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSC 61
           ++ EK+E     K  G + F+ GKY +A  +Y+K    +E+  SF+++E  +A  LRL+ 
Sbjct: 139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS 198
Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
           +LN A C LKL+ +S     C K LEL+  N K L RR +AHL  ++ E A AD ++ L 
Sbjct: 199 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258
Query: 122 IDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
           + PNN+  K      + + R     + +++  M  ++
Sbjct: 259 LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 80/158 (50%)
Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           MDT EK+E     K  G + F+ GKY +A  +Y K    +E  +  ++ E   +    L+
Sbjct: 259 MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318
Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L
Sbjct: 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378
Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            ++P N+  +L     + K +E+ +     +  M  K 
Sbjct: 379 EVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKF 416

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 11  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD-EKHQANGLRLSCYLNNAACK 69
           E  K+ GN  F++  +  A KKY K  + +E   +  +D +  +   + LSC LN  ACK
Sbjct: 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 283
Query: 70  LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 129
           LK+ D+      C + LE++P N KALYRR+Q      E ++A AD+K+A  I P ++ +
Sbjct: 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 343
Query: 130 KLVYMELKDK 139
           +   +++K K
Sbjct: 344 QAELLKVKQK 353

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQ--ANGLR 58
           M   E+I A +R+K DGN LF+  K   A ++YE A   +     F    K+Q  A  ++
Sbjct: 170 MTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVK 229
Query: 59  LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR 118
             C+LN AAC +KL+ Y E    C  VL  E  N KAL+RR +A  +  +++ A  D ++
Sbjct: 230 NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK 289
Query: 119 ALTIDPNNRVVKLVYMELKDKQREYAKYQAEIF 151
           A    P+++ ++     L ++++   + Q E++
Sbjct: 290 AQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 12/122 (9%)
Query: 9   ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC 68
           + E+ + +GN LF+ G Y  A   Y +A  +         D   Q   +    + N AAC
Sbjct: 27  SVEQLRKEGNELFKCGDYGGALAAYTQALGL---------DATPQDQAV---LHRNRAAC 74
Query: 69  KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128
            LKLEDY +  +  +K +E +  +VKALYRRSQA  K   L++A  D++R ++++P N+V
Sbjct: 75  HLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134
Query: 129 VK 130
            +
Sbjct: 135 FQ 136

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 5   EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEK--HQANGLRLSCY 62
           EK+++    K +GN  F+  +   A  KY++A      H    DD+    +   + +SC 
Sbjct: 33  EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCN 91
Query: 63  LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122
           LN A C  K +DY +     +KVL+++  NVKALY+   A++    LE+A+ ++ +A ++
Sbjct: 92  LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151
Query: 123 DPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK 157
           +PNN  ++  Y    +K +E  K     FG M  K
Sbjct: 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           MD     EA    K+ GN  ++ G Y +A + Y+KA   +E   +              S
Sbjct: 3   MDPGNSAEAW---KNLGNAYYKQGDYQKAIEYYQKA---LELDPN------------NAS 44
Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            + N      K  DY +      K LEL+P N KA YRR  A+ K  + +KA  D ++AL
Sbjct: 45  AWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKAL 104
Query: 121 TIDPNNRVVKLVYMELKDKQ 140
            +DPNN   K      K KQ
Sbjct: 105 ELDPNNAKAKQNLGNAKQKQ 124

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAA---KIIEFHHSFTDDEKHQANGL 57
           M   EK +A      +GN L+R G    A+ KY  A    K ++        E  Q +  
Sbjct: 5   MTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQ 64
Query: 58  RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIK 117
                LN   CKL +E+Y E    C+ +L     NVKA ++R +AH      ++A+AD  
Sbjct: 65  ITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFA 124
Query: 118 RALTIDP 124
           + L +DP
Sbjct: 125 KVLELDP 131

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 5   EKIEACERKKHDGNLLFRAGKYWRASKKYEKAA---KIIEFHHSFTDDEKHQANGLRLSC 61
           EK +A      +GN L+R G    A+ KY  A    K ++        E  Q +      
Sbjct: 3   EKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPL 62
Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
            LN   CKL +E+Y E    C+ +L     NVKA ++R +AH      ++A+AD  + L 
Sbjct: 63  LLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLE 122
Query: 122 IDP 124
           +DP
Sbjct: 123 LDP 125

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           GN  ++ G Y  A + Y+KA ++               N       L NA  K    DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALEL-------------DPNNAEAWYNLGNAYYKQG--DYD 60
Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136
           E      K LEL+P N +A Y    A+ K  + ++A    ++AL +DPNN   K      
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Query: 137 KDKQ 140
           K KQ
Sbjct: 121 KQKQ 124

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 37/85 (43%)
Query: 56  GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEAD 115
           G     + N      K  DY E      K LEL+P N +A Y    A+ K  + ++A   
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 116 IKRALTIDPNNRVVKLVYMELKDKQ 140
            ++AL +DPNN   K      K KQ
Sbjct: 66  YQKALELDPNNAEAKQNLGNAKQKQ 90

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 5   EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE---FHHSFTDDEKHQANGLRLSC 61
           +K+++ E  +  GN LF    Y  A   Y  A   ++         + E  + +   +  
Sbjct: 6   DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPL 65
Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
           Y N + C L + D  E     ++VL+ E  N KAL+RR++A +   +L++AE D+K  L 
Sbjct: 66  YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125
Query: 122 IDP 124
             P
Sbjct: 126 NHP 128

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 3   THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCY 62
            H K  + +  K  GN LF   KY  A+  Y +A                  N L    Y
Sbjct: 2   PHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYY 46
Query: 63  LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122
            N A C LK++   +  + C + LEL+  +VKA +   Q  L+    ++A A+++RA ++
Sbjct: 47  TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
Query: 123 DPNNRV 128
               R+
Sbjct: 107 AKEQRL 112

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 14  KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 73
           K  GN LF   KY  A+  Y +A                  N L    Y N A C LK++
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYYTNRALCYLKMQ 52
Query: 74  DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128
              +  + C + LEL+  +VKA +   Q  L+    ++A A+++RA ++    R+
Sbjct: 53  QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 53/147 (36%), Gaps = 32/147 (21%)
Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           MD     EA       GN  ++ G Y  A + Y+KA                      L 
Sbjct: 3   MDPGNSAEAWYNL---GNAYYKQGDYDEAIEYYQKA----------------------LE 37
Query: 61  CYLNNAACKLKLE-------DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAE 113
            Y NNA     L        DY E      K LEL P N +A Y    A+ K  + ++A 
Sbjct: 38  LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 97
Query: 114 ADIKRALTIDPNNRVVKLVYMELKDKQ 140
              ++AL + PNN   K      K KQ
Sbjct: 98  EYYQKALELYPNNAEAKQNLGNAKQKQ 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-52
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-49
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-45
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	6e-45
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-43
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	3e-38
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-30
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	7e-22
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-20
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	4e-20
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-20
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-20
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-20
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-19
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-18
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-17
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-11
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	6e-13
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	8e-13
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-08
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	7e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-04

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  172 bits (436), Expect = 1e-52
 Identities = 51/159 (32%), Positives = 81/159 (50%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           MDT EK+E     K  G + F+ GKY +A  +Y K    +E  +  ++ E   +    L+
Sbjct: 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L
Sbjct: 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG 159
            ++P N+  +L     + K +E+ +    I+  M  K  
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFA 417

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  160 bits (406), Expect = 3e-49
 Identities = 53/159 (33%), Positives = 87/159 (54%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           M++ EK+E     K  G + F+ GKY +A  +Y+K    +E+  SF+++E  +A  LRL+
Sbjct: 138 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL+ +S     C K LEL+  N K L RR +AHL  ++ E A AD ++ L
Sbjct: 198 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 257

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG 159
            + PNN+  K      + + R     + +++  M  ++ 
Sbjct: 258 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  146 bits (371), Expect = 1e-45
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEK-HQANGLRL 59
               EK+++    K +GN  F+  +   A  KY++A         + D     +   + +
Sbjct: 29  YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88

Query: 60  SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRA 119
           SC LN A C  K +DY +     +KVL+++  NVKALY+   A++    LE+A+ ++ +A
Sbjct: 89  SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148

Query: 120 LTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG 159
            +++PNN  ++  Y    +K +E  K     FG M  K  
Sbjct: 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  149 bits (377), Expect = 6e-45
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 2/160 (1%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF--TDDEKHQANGLR 58
           M   E+I A +R+K DGN LF+  K   A ++YE A   +     F      +  A  ++
Sbjct: 170 MTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVK 229

Query: 59  LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR 118
             C+LN AAC +KL+ Y E    C  VL  E  N KAL+RR +A  +  +++ A  D ++
Sbjct: 230 NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK 289

Query: 119 ALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
           A    P+++ ++     L ++++   + Q E++  +    
Sbjct: 290 AQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  140 bits (354), Expect = 2e-43
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 4/158 (2%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH---HSFTDDEKHQANGL 57
               +K+++ E  +  GN LF    Y  A   Y  A   ++         + E  + +  
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 58  RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIK 117
            +  Y N + C L + D  E     ++VL+ E  N KAL+RR++A +   +L++AE D+K
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

Query: 118 RALTIDPNNR-VVKLVYMELKDKQREYAKYQAEIFGTM 154
             L   P    VV      + +++ E        +  M
Sbjct: 122 LLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKM 159

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  132 bits (334), Expect = 3e-38
 Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 1/151 (0%)

Query: 7   IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQA-NGLRLSCYLNN 65
           +   E  K+ GN  F++  +  A KKY K  + +E   +  +D        + LSC LN 
Sbjct: 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNI 279

Query: 66  AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125
            ACKLK+ D+      C + LE++P N KALYRR+Q      E ++A AD+K+A  I P 
Sbjct: 280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339

Query: 126 NRVVKLVYMELKDKQREYAKYQAEIFGTMLS 156
           ++ ++   +++K K +     +   +  M +
Sbjct: 340 DKAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  107 bits (269), Expect = 1e-30
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 12/138 (8%)

Query: 2   DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSC 61
                  + E+ + +GN LF+ G Y  A   Y +A   +    +  D             
Sbjct: 20  PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQA---LGLDATPQDQAV---------L 67

Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
           + N AAC LKLEDY +  +  +K +E +  +VKALYRRSQA  K   L++A  D++R ++
Sbjct: 68  HRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127

Query: 122 IDPNNRVVKLVYMELKDK 139
           ++P N+V +     +   
Sbjct: 128 LEPKNKVFQEALRNISGP 145

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 85.1 bits (211), Expect = 7e-22
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 15/147 (10%)

Query: 2   DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSC 61
                ++  E  K   N  F+A  Y  A K Y +A ++   +  +               
Sbjct: 5   PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY--------------- 49

Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
           Y N +   L+ E Y       T+ +EL+   +K  YRR+ +++   +   A  D +  + 
Sbjct: 50  YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVK 109

Query: 122 IDPNNRVVKLVYMELKDKQREYAKYQA 148
           + P+++  K+ Y E     ++ A  +A
Sbjct: 110 VKPHDKDAKMKYQECNKIVKQKAFERA 136

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 80.4 bits (199), Expect = 3e-20
 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 15/146 (10%)

Query: 4   HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYL 63
           H K  + +  K  GN LF   KY  A+  Y +A                  N L    Y 
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR---------------NPLVAVYYT 47

Query: 64  NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 123
           N A C LK++   +  + C + LEL+  +VKA +   Q  L+    ++A A+++RA ++ 
Sbjct: 48  NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107

Query: 124 PNNRVVKLVYMELKDKQREYAKYQAE 149
              R+     +    +  +  ++ + 
Sbjct: 108 KEQRLNFGDDIPSALRIAKKKRWNSI 133

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 84.7 bits (210), Expect = 4e-20
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 15/143 (10%)

Query: 7   IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA 66
           ++  E  K   N  F+A  Y  A K Y +A ++   +  +               Y N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YGNRS 47

Query: 67  ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
              L+ E Y       T+ +EL+   +K  YRR+ +++   +   A  D +  + + P++
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107

Query: 127 RVVKLVYMELKDKQREYAKYQAE 149
           +  K+ Y E     ++ A  +A 
Sbjct: 108 KDAKMKYQECNKIVKQKAFERAI 130

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 79.6 bits (197), Expect = 4e-20
 Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 11  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 70
              K+ GN  F+ G Y +A K Y +A K                       Y N AAC  
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL---------------YSNRAACYT 61

Query: 71  KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130
           KL ++      C + ++LEP  +K   R++ A     +  KA    ++AL +D + +   
Sbjct: 62  KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAA 121

Query: 131 LVYMELKDKQR 141
             Y      Q 
Sbjct: 122 DGYQRCMMAQY 132

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 79.1 bits (196), Expect = 4e-20
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 7   IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA 66
           +E     K  GN     G    A + Y +A K+   +H                 Y N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVL---------------YSNRS 45

Query: 67  ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           A   K  DY +      K ++L+P   K   R++ A    +  E+A+   +  L  + NN
Sbjct: 46  AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

Query: 127 RVVKLVYMELKDK 139
             +K     ++ +
Sbjct: 106 PQLKEGLQNMEAR 118

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 79.6 bits (197), Expect = 4e-20
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 8   EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA 67
           E  + +K+ GN  F+ G Y  A + Y +A K    +                  Y N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL---------------YSNRAA 55

Query: 68  CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127
           C  KL ++      C   + L+   +K   R++   +   E  KA+   + AL +DP+N 
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 128 VVKLVYMELK 137
             +       
Sbjct: 116 EAREGVRNCL 125

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 77.6 bits (192), Expect = 3e-19
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 15/142 (10%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           + + E     ER K +GN   +   +  A   Y KA ++   +  +              
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY-------------- 48

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            + N AA   KL +Y+     C + + ++P   KA  R   A    ++  +A A  K+AL
Sbjct: 49  -FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107

Query: 121 TIDPNNRVVKLVYMELKDKQRE 142
            +DP+N   K      + K RE
Sbjct: 108 ELDPDNETYKSNLKIAELKLRE 129

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 74.2 bits (183), Expect = 4e-18
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 19/137 (13%)

Query: 11  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 70
           E  + +G   F    +  A K Y +  K                       Y N AA   
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG---------------YSNRAAALA 49

Query: 71  KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR--- 127
           KL  + E  + C K +E +P  V+A  R++ A +   E   A   +  A T D       
Sbjct: 50  KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS 109

Query: 128 -VVKLVYMELKDKQREY 143
              ++  +  K  Q+ +
Sbjct: 110 SAREIDQLYYKASQQRF 126

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 74.4 bits (183), Expect = 1e-17
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 17/137 (12%)

Query: 11  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 70
           ++ K +GN      +Y +A   Y +A  I   +  +                 N AA   
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY---------------LSNRAAAYS 56

Query: 71  KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR--V 128
               + + +        ++P   KA  R   A    ++ + A+   ++ +  + N     
Sbjct: 57  ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116

Query: 129 VKLVYMELKDKQREYAK 145
           +K      K K  E  +
Sbjct: 117 MKRGLETTKRKIEEANR 133

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 76.5 bits (188), Expect = 1e-17
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 15/139 (10%)

Query: 11  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 70
           +  K  GN LF   KY  A+  Y +A         +               Y N A C L
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YTNRALCYL 49

Query: 71  KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130
           K++   +  + C + LEL+  +VKA +   Q  L+    ++A A+++RA ++    R+  
Sbjct: 50  KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109

Query: 131 LVYMELKDKQREYAKYQAE 149
              +    +  +  ++ + 
Sbjct: 110 GDDIPSALRIAKKKRWNSI 128

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.9 bits (177), Expect = 8e-16
 Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 15/142 (10%)

Query: 4   HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYL 63
           +++++   +       L R G+Y  A+ KYE   K            +       +    
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----------EPSVAEYTVRSKE 276

Query: 64  NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 123
               C  K E   E   +C++VL++EP NV AL  R++A+L     ++A  D + A   +
Sbjct: 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336

Query: 124 PNNRVVK----LVYMELKDKQR 141
            N++ ++         LK  Q+
Sbjct: 337 ENDQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 15/137 (10%)

Query: 11  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 70
           E+    G  L  AG+   A  ++  A           D + + A       Y   A   L
Sbjct: 4   EKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIA-------YYRRATVFL 48

Query: 71  KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130
            +          TKV+ L+     A  +R    LK  +L++AE D K+ L  +P+ +  K
Sbjct: 49  AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK 108

Query: 131 LVYMELKDKQREYAKYQ 147
               +L           
Sbjct: 109 EAESQLVKADEMQRLRS 125

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 15/140 (10%)

Query: 6   KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNN 65
           K +  +R +      F    Y  A    +K  ++             +            
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAEL-------RELR 160

Query: 66  AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125
           A C +K  +  +  S      +L+  N +A Y+ S  + +  + E + ++++  L +D +
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220

Query: 126 NRVVKLVYMELKDKQREYAK 145
           ++     Y ++K   +    
Sbjct: 221 HKRCFAHYKQVKKLNKLIES 240

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 4   HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYL 63
           +++++   +       L R G+Y  A+ KYE   K            +       +    
Sbjct: 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----------EPSIAEYTVRSKE 299

Query: 64  NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 123
               C  K E   E   +C++VL++EP NV AL  R++A+L     ++A  D + A   +
Sbjct: 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359

Query: 124 PNNRVVKLVYMELKDKQREYAK 145
            N++ ++    + +   ++  K
Sbjct: 360 ENDQQIREGLEKAQRLLKQSQK 381

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 66.6 bits (163), Expect = 8e-14
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 15/143 (10%)

Query: 5   EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLN 64
           + +   E+    G  L  AG+   A  ++  A   ++                    Y  
Sbjct: 21  QSMADVEKHLELGKKLLAAGQLADALSQFHAA---VDGDPDNYI------------AYYR 65

Query: 65  NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124
            A   L +          TKV++L+     A  +R    LK  +L++AE D K+ L  +P
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125

Query: 125 NNRVVKLVYMELKDKQREYAKYQ 147
           +    K    +L           
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRS 148

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.2 bits (141), Expect = 8e-11
 Identities = 21/143 (14%), Positives = 52/143 (36%), Gaps = 15/143 (10%)

Query: 6   KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNN 65
           K +  +R +      F +G Y  A    +K  ++  +                       
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL---------------RELR 183

Query: 66  AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125
           A C +K  +  +  S      +L+  N +A Y+ S  + +  + E + ++++  L +D +
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243

Query: 126 NRVVKLVYMELKDKQREYAKYQA 148
           ++     Y ++K   +     + 
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEE 266

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 61.2 bits (149), Expect = 6e-13
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 22/139 (15%)

Query: 11  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 70
            ++K  GN  ++   +  A K Y+KA ++   + ++                 N AA   
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY---------------ITNQAAVYF 49

Query: 71  KLEDYSETSSLCTKVLELEPLN-------VKALYRRSQAHLKTSELEKAEADIKRALTID 123
           +  DY++   LC K +E+   N        KA  R   ++ K  + + A     ++L   
Sbjct: 50  EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109

Query: 124 PNNRVVKLVYMELKDKQRE 142
               V+K      K  + +
Sbjct: 110 RTPDVLKKCQQAEKILKEQ 128

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 60.8 bits (148), Expect = 8e-13
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 22/135 (16%)

Query: 3   THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCY 62
           ++   +A   +K  GN  ++   + +A   Y+KA ++   + +F               Y
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF---------------Y 45

Query: 63  LNNAACKLKLEDYSETSSLCTKVLELEPLN-------VKALYRRSQAHLKTSELEKAEAD 115
            N AA   + + ++E    C K +E+            KA+ R   A  K ++L  A   
Sbjct: 46  NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105

Query: 116 IKRALTIDPNNRVVK 130
             R+L+   +  +VK
Sbjct: 106 FHRSLSEFRDPELVK 120

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 9/65 (13%), Positives = 27/65 (41%)

Query: 71  KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130
           K +D+ +      K +EL+P N+     ++  + +  +  +     ++A+ +    R   
Sbjct: 20  KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY 79

Query: 131 LVYME 135
            +  +
Sbjct: 80  KLIAK 84

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 61.4 bits (150), Expect = 3e-12
 Identities = 29/128 (22%), Positives = 43/128 (33%), Gaps = 19/128 (14%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G   F    +  A K Y +  K           E  +        Y N AA   KL  + 
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKR--------APEDARG-------YSNRAAALAKLMSFP 190

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK----LV 132
           E  + C K +E +P  V+A  R++ A +   E   A   +  A T D           + 
Sbjct: 191 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250

Query: 133 YMELKDKQ 140
            +  K  Q
Sbjct: 251 QLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 54.9 bits (133), Expect = 6e-10
 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 19/137 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           GN  ++A ++  A + Y KA    E H   T                N AA + +  +Y 
Sbjct: 12  GNKFYKARQFDEAIEHYNKA---WELHKDIT-------------YLNNRAAAEYEKGEYE 55

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV---VKLVY 133
              S     +E            S++  +         D+K+ +     +        + 
Sbjct: 56  TAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADIL 115

Query: 134 MELKDKQREYAKYQAEI 150
            +L++ ++E  K +AE 
Sbjct: 116 TKLRNAEKELKKAEAEA 132

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.4 bits (111), Expect = 7e-07
 Identities = 11/110 (10%), Positives = 24/110 (21%), Gaps = 16/110 (14%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                R G  +      +K  +           +K              A    KL +  
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEY---------YQKSLT-------EHRTADILTKLRNAE 122

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           +          + P   +      + +   S+   A       +   P +
Sbjct: 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 53.5 bits (129), Expect = 3e-10
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query: 11  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 70
           E++K  GN LF+ G Y  A   Y++                          Y N A   +
Sbjct: 5   EKQKEQGNSLFKQGLYREAVHCYDQLITA---------------QPQNPVGYSNKAMALI 49

Query: 71  KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT-IDPNNRVV 129
           KL +Y++   +C + L           R      +    + A   ++  +  +D      
Sbjct: 50  KLGEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEVDELPEGY 108

Query: 130 K 130
            
Sbjct: 109 D 109

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 16/110 (14%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G   F       A +  +KA ++           +  +       Y+  A       D +
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIEL---------FPRVNS-------YIYMALIMADRNDST 287

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E  +   K L+L+  N    Y R Q +      ++A  D  +A  +DP N
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 16/137 (11%)

Query: 14  KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 73
           K  GN  FR  KY  A K Y  A ++          E           Y N +AC + + 
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALEL---------KEDPVF-------YSNLSACYVSVG 53

Query: 74  DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 133
           D  +   + TK LEL+P   K L RR+ A+    +   A  D+         N       
Sbjct: 54  DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113

Query: 134 MELKDKQREYAKYQAEI 150
           +E    ++  +K + + 
Sbjct: 114 LERNLNKQAMSKLKEKF 130

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 19/141 (13%), Positives = 50/141 (35%), Gaps = 15/141 (10%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK--LED 74
             +L     + +A K+Y+ A ++        +++                       +E+
Sbjct: 379 AEILTDKNDFDKALKQYDLAIEL--------ENKLDGIYVGIAPLVGKATLLTRNPTVEN 430

Query: 75  YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK--LV 132
           + E ++L  K  +L+P + +A    +Q  L+  ++++A    + +  +          + 
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490

Query: 133 YMELKDKQ---REYAKYQAEI 150
           + E    Q   R       +I
Sbjct: 491 FAEAAKVQQRIRSDPVLAKKI 511

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
             ++            ++KA K+        D             Y +       L++Y 
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKL--------DSNNSSV-------YYHRGQMNFILQNYD 321

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           +      K  EL+P N+    + +    + ++ +  E     A    P  
Sbjct: 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 15/119 (12%), Positives = 32/119 (26%), Gaps = 24/119 (20%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
             L +R  K+      + +A +           E  +            A       D+ 
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRK--------FPEAPEV-------PNFFAEILTDKNDFD 389

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTS---------ELEKAEADIKRALTIDPNN 126
           +        +ELE          +    K +            +A   +++A  +DP +
Sbjct: 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G + F    Y +A K ++KA ++        D E           Y+  A    +   + 
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKEL--------DPENIFP-------YIQLACLAYRENKFD 355

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           +  +L ++     P   +     ++     ++ +KA      A+ ++   
Sbjct: 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 6/131 (4%)

Query: 13  KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL 72
                   F   K       Y+++    E      +   +       S    + +     
Sbjct: 160 SVTSMASFFGIFKPELTFANYDES---NEADKELMNGLSNLYKRSPESYDKADESFTKAA 216

Query: 73  EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK-- 130
             + E      +  +L+     +L          ++   A  DIK+A+ + P        
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM 276

Query: 131 -LVYMELKDKQ 140
            L+  +  D  
Sbjct: 277 ALIMADRNDST 287

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
             +      + + Y +        LEL+   V      S  ++   +L+K      +AL 
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALE 67

Query: 122 IDPNN 126
           + P+ 
Sbjct: 68  LKPDY 72

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 56.0 bits (135), Expect = 4e-10
 Identities = 12/135 (8%), Positives = 33/135 (24%), Gaps = 15/135 (11%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
            +     G         ++    +  H    +                    +   + ++
Sbjct: 30  ADAELGMGDTTAGEMAVQRG---LALHPGHPE------------AVARLGRVRWTQQRHA 74

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136
           E + L  +  +  P +         A     + E A A   RA  + P    +    +  
Sbjct: 75  EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNW 134

Query: 137 KDKQREYAKYQAEIF 151
           + +  ++        
Sbjct: 135 RRRLCDWRALDVLSA 149

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 15/104 (14%)

Query: 23  AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC 82
                R   +   A   +                     +L  A  +L + D +      
Sbjct: 2   TADGPRELLQLRAA---VRHRPQDFV------------AWLMLADAELGMGDTTAGEMAV 46

Query: 83  TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
            + L L P + +A+ R  +         +A   +++A    P +
Sbjct: 47  QRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 16/110 (14%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G   F       A    +++  +              +       Y+  A      E+  
Sbjct: 250 GIFHFLKNNLLDAQVLLQESINL---------HPTPNS-------YIFLALTLADKENSQ 293

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E      K ++L P      Y R Q +    + + A+ D ++A +++P N
Sbjct: 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 15/137 (10%)

Query: 14  KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 73
           K+ GN  F A  +  A K Y+ A ++      F               Y N +AC +   
Sbjct: 29  KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF---------------YSNISACYISTG 73

Query: 74  DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 133
           D  +     TK LE++P + KAL RR+ A+        A  D+         +       
Sbjct: 74  DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPM 133

Query: 134 MELKDKQREYAKYQAEI 150
           +E    ++        +
Sbjct: 134 LERNLNKQAMKVLNENL 150

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 1/111 (0%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKII-EFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY 75
             +L   G +  A K+Y+ A ++                    L+   +    +L  E +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 76  SETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           +    L TK  EL+P + +A    +Q  L+  ++++A    + +  +    
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
              L          K ++KA   ++ +  +               Y +       L+DY 
Sbjct: 283 ALTLADKENSQEFFKFFQKA---VDLNPEYPP------------TYYHRGQMYFILQDYK 327

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
                  K   L P NV    + +    K  +  ++EA         P  
Sbjct: 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 11/103 (10%)

Query: 24  GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT 83
           G +        +   +           +  A         N        ++++E      
Sbjct: 1   GSHMNGEPDIAQLKGLSP------SQRQAYAVQ-----LKNRGNHFFTAKNFNEAIKYYQ 49

Query: 84  KVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
             +EL+P         S  ++ T +LEK      +AL I P++
Sbjct: 50  YAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G + F    Y  A + ++KA  +        + E           Y+  A    K   ++
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSL--------NPENVYP-------YIQLACLLYKQGKFT 361

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E+ +   +     P   +     ++      + + A      A  ++   
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 16/142 (11%), Positives = 38/142 (26%), Gaps = 12/142 (8%)

Query: 11  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDE---------KHQANGLRLSC 61
           + +     +L            ++   ++   + S   D          +   +      
Sbjct: 152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211

Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
            + N       + Y    S  T    L      AL      H   + L  A+  ++ ++ 
Sbjct: 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271

Query: 122 IDPNNRVVK---LVYMELKDKQ 140
           + P         L   + ++ Q
Sbjct: 272 LHPTPNSYIFLALTLADKENSQ 293

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 14/126 (11%), Positives = 29/126 (23%), Gaps = 31/126 (24%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
             LL++ GK+  +   + +         +  +                 A       D+ 
Sbjct: 351 ACLLYKQGKFTESEAFFNET---KLKFPTLPE------------VPTFFAEILTDRGDFD 395

Query: 77  ETSSLCTKVLELEPLNVKALYRR----------------SQAHLKTSELEKAEADIKRAL 120
                      LE +  K                         L   +   A   + +A 
Sbjct: 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455

Query: 121 TIDPNN 126
            +DP +
Sbjct: 456 ELDPRS 461

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 17/124 (13%), Positives = 30/124 (24%), Gaps = 17/124 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G          R      +A  +          E+  A         ++   K  LE   
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGL--------TPEQVVA-------IASHDGGKQALETVQ 429

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136
               +  +   L P  V A+            +    +    AL    N+ +V      L
Sbjct: 430 RLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV--ALACL 487

Query: 137 KDKQ 140
             + 
Sbjct: 488 GGRP 491

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G          R      +A  +          ++  A         +N   K  LE   
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGL--------TPQQVVA-------IASNGGGKQALETVQ 259

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+   S        +++    + +A  + P  
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                      R      +A  +          E+  A         +N   K  LE   
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGL--------TPEQVVA-------IASNGGGKQALETVQ 395

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 396 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 445

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 13/110 (11%), Positives = 26/110 (23%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                             +A  +          E+  A         +N   K  LE   
Sbjct: 147 DGGKQALETVQALLPVLCQAHGL--------TPEQVVA-------IASNGGGKQALETVQ 191

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 192 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.4 bits (118), Expect = 8e-08
 Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G          R      +A  +          ++  A         ++   K  LE   
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGL--------TPQQVVA-------IASHDGGKQALETVQ 361

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 362 RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                      R      +A  +          E+  A         ++   K  LE   
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGL--------TPEQVVA-------IASHDGGKQALETVQ 157

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 158 ALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 14/110 (12%), Positives = 29/110 (26%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G          R      +A  +          ++  A         +N+  K  LE   
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGL--------TPQQVVA-------IASNSGGKQALETVQ 293

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 294 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 16/138 (11%), Positives = 31/138 (22%), Gaps = 19/138 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                      R      +A  +          ++  A         ++   K  LE   
Sbjct: 79  DGGKQALETVQRLLPVLCQAHGL--------TPQQVVA-------IASHDGGKQALETVQ 123

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV----KLV 132
               +  +   L P  V A+            ++     + +A  + P   V        
Sbjct: 124 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGG 183

Query: 133 YMELKDKQREYAKYQAEI 150
              L+  QR         
Sbjct: 184 KQALETVQRLLPVLCQAH 201

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                      R      +A  +          ++  A         +N   K  LE   
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGL--------TPQQVVA-------IASNGGGKQALETVQ 327

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 328 RLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 9/65 (13%), Positives = 20/65 (30%)

Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
             ++   K  LE       +  +   L P  V A+            +++    + +A  
Sbjct: 75  IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 134

Query: 122 IDPNN 126
           + P  
Sbjct: 135 LTPEQ 139

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G          R      +A  +          ++  A         +N   K  LE   
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGL--------TPQQVVA-------IASNGGGKQALETVQ 225

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 226 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 275

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 15/111 (13%), Positives = 41/111 (36%), Gaps = 1/111 (0%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKI-IEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY 75
            +    AG+  +A   + +   + I+    +      + + +        A    K  +Y
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70

Query: 76  SETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
            +      ++L+  P NV  L   ++  +   + + A    ++ L ++ +N
Sbjct: 71  DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 17/130 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA-ACKLKLEDY 75
             +    G+   A + YEK  ++         +  +      L+  +       L  E  
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQL---------EADN------LAANIFLGNYYYLTAEQE 139

Query: 76  SETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 135
            +      K L        A YR   + L T+  EKA   +++ +   P+    K +  +
Sbjct: 140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD-K 198

Query: 136 LKDKQREYAK 145
           +   ++E  +
Sbjct: 199 ILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 16/111 (14%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                +   Y +A   Y++  +             +      + C    A  ++      
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQK---------APNN------VDCLEACAEMQVCRGQEK 105

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE-KAEADIKRALTIDPNN 126
           +   +  K+L+LE  N+ A       +  T+E E K      + L+     
Sbjct: 106 DALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM 156

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 10/134 (7%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G + F+ G++  A K +  A + I+   +    +K +          N      KL+ Y+
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE------PLLNNLGHVCRKLKKYA 253

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV----KLV 132
           E      + L L P N          H      E A      AL +  ++          
Sbjct: 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313

Query: 133 YMELKDKQREYAKY 146
                     Y   
Sbjct: 314 IEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 16/111 (14%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
               +    +    K      +   FH                SC   +    ++L   +
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKDPFH---------------ASCLPVHIGTLVELNKAN 73

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL-EKAEADIKRALTIDPNN 126
           E   L  K+++L P N  + +     +L      E A   + +A T++   
Sbjct: 74  ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY 124

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 11/78 (14%), Positives = 27/78 (34%)

Query: 49  DEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE 108
            E        L   ++ A       D+     L + V+E +P +   L       ++ ++
Sbjct: 12  PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK 71

Query: 109 LEKAEADIKRALTIDPNN 126
             +      + + + P+N
Sbjct: 72  ANELFYLSHKLVDLYPSN 89

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 8/110 (7%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G + F       A   ++ A  +          +         + + N      KL+ Y 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLL--------VKKTQSNEKPWAATWANLGHAYRKLKMYD 533

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
                  + L L   +       +  +L       A   +  +L I PN 
Sbjct: 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.5 bits (118), Expect = 7e-08
 Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
            + LF   ++        K  +I               +   L  Y  + A   +  + +
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEI---------------DPYNLDVYPLHLASLHESGEKN 356

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           +   +   +++  P            +L  +++ +A     ++ T+DP  
Sbjct: 357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 3/101 (2%)

Query: 26  YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85
           Y     K     ++       +     + +       L  A        + +  ++ TK+
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKS---SDLLLCKADTLFVRSRFIDVLAITTKI 331

Query: 86  LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           LE++P N+        +  ++ E  K        +   P  
Sbjct: 332 LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 22/132 (16%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKI----------------------IEFHHSFTDDEKHQA 54
           G +      + RA + Y++A  +                       +           + 
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266

Query: 55  NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEA 114
           +   L         K   ED    +      +     +   L  ++      S      A
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326

Query: 115 DIKRALTIDPNN 126
              + L IDP N
Sbjct: 327 ITTKILEIDPYN 338

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 11/110 (10%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G       K   A + + K+         F               ++  A       ++ 
Sbjct: 380 GIYYLCVNKISEARRYFSKS---STMDPQFGP------------AWIGFAHSFAIEGEHD 424

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           +  S  T    L              H++   +  A   ++ +  +   +
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 49.0 bits (117), Expect = 3e-08
 Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G   ++AGK+  A K ++    +  +   +               +L   AC+  L  Y 
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHYDARY---------------FLGLGACRQSLGLYE 69

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           +     +    ++    +  +  ++ HL+  +L+ AE+    A  +    
Sbjct: 70  QALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 48.3 bits (114), Expect = 7e-08
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 14/138 (10%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           M   +++        D      AG+Y  A+    +A   +E  H+   +E     G    
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAF 58

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLN-----------VKALYRRSQAHLKTSEL 109
           C+   A     L  + E      K L                 + A+Y R+ A       
Sbjct: 59  CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG 118

Query: 110 EKAEADIKRALTIDPNNR 127
            +A  + K+ + +    +
Sbjct: 119 AEAMPEFKKVVEMIEERK 136

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 9e-08
 Identities = 23/110 (20%), Positives = 34/110 (30%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
            N L   G    A   Y  A   +    +  D               N A  K +  +  
Sbjct: 278 ANALKEKGSVAEAEDCYNTA---LRLCPTHAD------------SLNNLANIKREQGNIE 322

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E   L  K LE+ P    A    +    +  +L++A    K A+ I P  
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 4e-07
 Identities = 12/65 (18%), Positives = 24/65 (36%)

Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
            +  A  + +  D+      C ++   EP N   L   S  H +   L+++      A+ 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 122 IDPNN 126
            +P  
Sbjct: 62  QNPLL 66

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 4e-07
 Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
              L  AG    A + Y  A +         + + +           +       L    
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQY--------NPDLYCV-------RSDLGNLLKALGRLE 152

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E  +   K +E +P    A            E+  A    ++A+T+DPN 
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G +    G+ W A   +EKA   +    +F D             Y+N      +   + 
Sbjct: 176 GCVFNAQGEIWLAIHHFEKA---VTLDPNFLD------------AYINLGNVLKEARIFD 220

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
              +   + L L P +       +  + +   ++ A    +RA+ + P+ 
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           GN+    G+   A + Y  A ++          +           Y+N AA  +   D  
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRL--------KPDFIDG-------YINLAAALVAAGDME 118

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
                    L+  P                  LE+A+A   +A+   PN 
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
             + +  G    A   Y +A   IE    F D             Y N A    +    +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRA---IELQPHFPD------------AYCNLANALKEKGSVA 288

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E        L L P +  +L   +    +   +E+A    ++AL + P  
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 13/110 (11%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
            +  ++AG +  A +   +  +          +  +          L  ++   +     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQ---------EPDN------TGVLLLLSSIHFQCRRLD 50

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
            ++   T  ++  PL  +A       + +  +L++A    + AL + P+ 
Sbjct: 51  RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
            ++ F+  +  R++     A   I+ +    +             Y N      +     
Sbjct: 40  SSIHFQCRRLDRSAHFSTLA---IKQNPLLAE------------AYSNLGNVYKERGQLQ 84

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E        L L+P  +      + A +   ++E A      AL  +P+ 
Sbjct: 85  EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           GNLL   G+   A   Y KA   IE   +F               + N         +  
Sbjct: 142 GNLLKALGRLEEAKACYLKA---IETQPNFAV------------AWSNLGCVFNAQGEIW 186

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
                  K + L+P  + A         +    ++A A   RAL++ PN+
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           GN+L  A  + RA   Y +A   +    +                + N A    +     
Sbjct: 210 GNVLKEARIFDRAVAAYLRA---LSLSPNHAV------------VHGNLACVYYEQGLID 254

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
                  + +EL+P    A    + A  +   + +AE     AL + P +
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G +L + G+   A ++Y+ A           D  +          Y    +      ++ 
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDR--------DTTRLDM-------YGQIGSYFYNKGNFP 125

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
                  K +     + K  Y   QA+    E  KA++   + L + PN 
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 9/110 (8%), Positives = 25/110 (22%), Gaps = 12/110 (10%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
               +   KY  A K  E     +    + + D            +       +K    S
Sbjct: 44  AVCYYELAKYDLAQKDIETYFSKVNATKAKSAD------------FEYYGKILMKKGQDS 91

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
                    ++ +   +    +             A   +++ +     +
Sbjct: 92  LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 14/113 (12%), Positives = 25/113 (22%), Gaps = 18/113 (15%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
            + LF+   Y  A + + K                          Y   A C  +L  Y 
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYI-------YNRRAVCYYELAKYD 54

Query: 77  E---TSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
                       +              +  +K  +   A    + A+  D   
Sbjct: 55  LAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR 107

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 29/142 (20%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G   +   +Y +A   + K    +E   +                YL  A      +  +
Sbjct: 149 GQAYYYNKEYVKADSSFVKV---LELKPNIYI------------GYLWRARANAAQDPDT 193

Query: 77  ETS---SLCTKVLELEPLN--------VKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125
           +         K++E+            ++A    +  +    +  KA+A  K  L +DP 
Sbjct: 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253

Query: 126 NRVVKLVYMELKDKQREYAKYQ 147
           N   K     LK K   +  + 
Sbjct: 254 N---KKAIDGLKMKLEHHHHHH 272

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 18/113 (15%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G+  +  G +  A +  EK    I    +                +          ++Y 
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQ---IRPTTTDPKV------------FYELGQAYYYNKEYV 159

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLK---TSELEKAEADIKRALTIDPNN 126
           +  S   KVLEL+P        R++A+      ++   A+   ++ + +    
Sbjct: 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 45.2 bits (107), Expect = 8e-07
 Identities = 12/121 (9%), Positives = 31/121 (25%), Gaps = 15/121 (12%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
               +  G+   A   +                     +   +   +  AA     E + 
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCIY---------------DFYNVDYIMGLAAIYQIKEQFQ 87

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136
           + + L      L   +   ++   Q  L+     KA+   +  +    + ++       L
Sbjct: 88  QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYL 147

Query: 137 K 137
            
Sbjct: 148 D 148

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 13/110 (11%), Positives = 29/110 (26%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G          R      +A  +          ++  A         ++   K  LE   
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGL--------TPDQVVA-------IASHDGGKQALETVQ 345

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P+ 
Sbjct: 346 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 12/110 (10%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                      R      +A  +          ++  A         ++   K  LE   
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGL--------TPDQVVA-------IASHGGGKQALETVQ 311

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P+ 
Sbjct: 312 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 13/110 (11%), Positives = 26/110 (23%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                      R      +A  +             Q          +N   K  LE   
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGL----------PPDQVVA-----IASNIGGKQALETVQ 277

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P+ 
Sbjct: 278 RLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 6e-06
 Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G          R      +A  +           +  A         +N   K  LE   
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGL--------TQVQVVA-------IASNIGGKQALETVQ 616

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P+ 
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 7e-06
 Identities = 12/110 (10%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                      R      +A  +          ++  A         +N   K  LE   
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGL--------TPDQVVA-------IASNGGGKQALETVQ 684

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L    V A+   +        +++    + +A  + P+ 
Sbjct: 685 RLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 9e-06
 Identities = 12/110 (10%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                      R      +A  +           +  A         ++   K  LE   
Sbjct: 199 NGGKQALETVQRLLPVLCQAHGL--------TPAQVVA-------IASHDGGKQALETMQ 243

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P+ 
Sbjct: 244 RLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 10/65 (15%), Positives = 21/65 (32%)

Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
             +N   K  LE       +  +   L P  V A+            +++    + +A  
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254

Query: 122 IDPNN 126
           + P+ 
Sbjct: 255 LPPDQ 259

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G          R      +A  +          E+  A         +N   K  LE   
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGL--------TQEQVVA-------IASNNGGKQALETVQ 718

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 719 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQ 768

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 12/110 (10%), Positives = 27/110 (24%), Gaps = 16/110 (14%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G          R      +A  +          ++  A        + +   K  LE   
Sbjct: 369 GGGKQALETVQRLLPVLCQAHGL--------TPDQVVA--------IASNGGKQALETVQ 412

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +   + P  
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 8/65 (12%), Positives = 19/65 (29%)

Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
             ++   K  LE       +  +   L P  V A+            +++    + +A  
Sbjct: 636 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 695

Query: 122 IDPNN 126
           +    
Sbjct: 696 LTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 16/110 (14%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                      R      +A  +          ++  A         +N   K  LE   
Sbjct: 335 DGGKQALETVQRLLPVLCQAHGL--------TPDQVVA-------IASNGGGKQALETVQ 379

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  + P+ 
Sbjct: 380 RLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 13/110 (11%), Positives = 26/110 (23%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G          R      +A  +        D               +N   K  LE   
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGL------TPDQV---------VAIASNGGGKQALETVQ 582

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L  + V A+            +++    + +A  + P  
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 11/112 (9%), Positives = 27/112 (24%), Gaps = 15/112 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                      +      +A  +                  ++    +N   K  L    
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGL---------------TPDQVVAIASNIGGKQALATVQ 514

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128
               +  +   L P  V A+            +++    + +A  + P+  V
Sbjct: 515 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 12/110 (10%), Positives = 26/110 (23%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                      R      +A  +          ++  A         +N   K  LE   
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGL--------TPDQVVA-------IASNGGGKQALETVQ 548

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +  +   L P  V A+            +++    + +A  +    
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 13/143 (9%), Positives = 36/143 (25%), Gaps = 18/143 (12%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G  + +      A+  +E   +           E+ +A       + +    + + E   
Sbjct: 28  GLSMLKLANLAEAALAFEAVCQA--------APEREEA-------WRSLGLTQAENEKDG 72

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136
                      L+P ++      + +H        A A ++  L   P     + +    
Sbjct: 73  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY---EQLGSVN 129

Query: 137 KDKQREYAKYQAEIFGTMLSKMG 159
                +      +      +   
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPN 152

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 12/110 (10%), Positives = 31/110 (28%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                       A             +             +      +         +Y 
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E  +L    LE+ P + +        +  ++  + A A+++RA+ + P++
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 15/103 (14%)

Query: 24  GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT 83
           G   + +  Y   A     +H                  +      LKL + +E +    
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHE---------------NPMEEGLSMLKLANLAEAALAFE 45

Query: 84  KVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
            V +  P   +A         +  +   A   +  A  +DP +
Sbjct: 46  AVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 88

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 21/143 (14%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G L   +  Y  A+    +A ++          +  Q        +    A         
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVEL--------RPDDAQL-------WNKLGATLANGNRPQ 223

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136
           E      + L++ P  V+ +Y  + ++   S+ + A   + RA+ +              
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT------PT 277

Query: 137 KDKQREYAKYQAEIFGTMLSKMG 159
            +  RE  +   + F  +L+ M 
Sbjct: 278 GEASREATRSMWDFFRMLLNVMN 300

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 12/109 (11%), Positives = 28/109 (25%), Gaps = 15/109 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G  + +      A+  +E   +                   R   + +    + + E   
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQK---------------EPEREEAWRSLGLTQAENEKDG 68

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125
                      L+P ++      + +H        A A ++  L   P 
Sbjct: 69  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 12/64 (18%), Positives = 23/64 (35%)

Query: 63  LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122
           +      LKL + +E +     V + EP   +A         +  +   A   +  A  +
Sbjct: 21  MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80

Query: 123 DPNN 126
           DP +
Sbjct: 81  DPKD 84

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.4 bits (101), Expect = 4e-06
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 17/112 (15%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G L + AG Y  +   +EKA ++        D E+ +        +L        LE Y 
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQL--------DPEESKY-------WLMKGKALYNLERYE 57

Query: 77  ETSSLCTKVLELEP--LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E       V+ +     N      ++ A       E      +    ++ ++
Sbjct: 58  EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 13/110 (11%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G  L+   +Y  A ++  +A++           E+ +        + N     L+++  +
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRV-------FENLGLVSLQMKKPA 158

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           +      K L L           +    K  E   A             N
Sbjct: 159 QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 42.6 bits (100), Expect = 7e-06
 Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 15/109 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
               +++G Y  A   ++    +               +      +L   AC+  +  Y 
Sbjct: 28  AFNQYQSGXYEDAHXVFQALCVL---------------DHYDSRFFLGLGACRQAMGQYD 72

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125
                 +    ++    +  +  ++  L+  EL +AE+ +  A  +  N
Sbjct: 73  LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G    + G    A   +E A +         D +  +A       +      + + E   
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEA-------WQYLGTTQAENEQEL 115

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
              S   + LEL+P N  AL   + +    S   +A   ++  L   P  
Sbjct: 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 24  GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLR-------LSCYLNNAACKLKLEDYS 76
            +    +K+  +A   +  +   T     +                      +L+  D  
Sbjct: 22  AELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               L    ++ +P +++A         +  +   A + ++R L + P+N
Sbjct: 82  NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 2/112 (1%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                      +A +      +    +       +  A G  L          L    + 
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 198

Query: 77  ETSSLCTKVLELEPLNVKA--LYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E   L    + L+P ++              + E +KA      AL++ PN+
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 15/109 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G    + G         E A           D    +A       +      + + E+  
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQ--------DPGDAEA-------WQFLGITQAENENEQ 116

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125
                  + LEL+P N+KAL   + ++  TS  + A   +K  +  +P 
Sbjct: 117 AAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 12/65 (18%), Positives = 22/65 (33%)

Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
                  +LK  D   T       +  +P + +A         +    + A   ++R L 
Sbjct: 68  AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127

Query: 122 IDPNN 126
           + PNN
Sbjct: 128 LQPNN 132

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 13/98 (13%), Positives = 32/98 (32%)

Query: 29  ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88
            + ++E+A   +E    F D  + +   +    +++           S +        E 
Sbjct: 1   GAMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60

Query: 89  EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
              +    +      LK  +L      ++ A+  DP +
Sbjct: 61  PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD 98

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 15/111 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G L   +G++ RA   +  A  +          E +         +    A     +   
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTV--------RPEDYSL-------WNRLGATLANGDRSE 264

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127
           E     T+ LE++P  +++ Y    + +      +A ++   AL++   +R
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
            ++L + GK   A   Y++A +I               +      Y N      +++D  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRI---------------SPTFADAYSNMGNTLKEMQDVQ 94

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
                 T+ +++ P    A    +  H  +  + +A A  + AL + P+ 
Sbjct: 95  GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
            N+    G    A + Y KA ++     +                + N A+   +     
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAA---------------AHSNLASVLQQQGKLQ 60

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E      + + + P    A         +  +++ A     RA+ I+P  
Sbjct: 61  EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           GN+      Y  A   +EKA +           E           +       +KLE   
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRA--------GMENGDL-------FYMLGTVLVKLEQPK 142

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
                  + +EL   + +A ++          L++A +        DP +
Sbjct: 143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
            NLL    +  RA   Y+KA ++        D     A       Y       +  E Y 
Sbjct: 64  ANLLSSVNELERALAFYDKALEL--------DSSAATA-------YYGAGNVYVVKEMYK 108

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E   +  K L     N    Y      +K  + + A   ++RA+ ++ N+
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G +L +  +   A    ++A   +E + + T+                   C        
Sbjct: 132 GTVLVKLEQPKLALPYLQRA---VELNENDTE------------ARFQFGMCLANEGMLD 176

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E  S    V E +P +  A Y     +      EKA   + +A+ I P++
Sbjct: 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
                  G Y +A++ + KA +         + E           Y+N A     + +  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIP-------YINFANLLSSVNELE 74

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
              +   K LEL+     A Y     ++     ++A+   ++AL     N
Sbjct: 75  RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN 124

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G L    G    A   + +A   +       +             +        +  ++ 
Sbjct: 50  GVLYDSLGLRALARNDFSQA---LAIRPDMPE------------VFNYLGIYLTQAGNFD 94

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
                   VLEL+P    A   R  A       + A+ D+      DPN+
Sbjct: 95  AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 16/137 (11%), Positives = 41/137 (29%), Gaps = 4/137 (2%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKI----IEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL 72
                R  +  +A +  +KA +        H       + +   +           +  L
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313

Query: 73  EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLV 132
           E      +   K  E      +     +  H    + E+AE   ++  + +      +L+
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373

Query: 133 YMELKDKQREYAKYQAE 149
           ++   + Q    K + +
Sbjct: 374 HLRYGNFQLYQMKCEDK 390

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 12/136 (8%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
             + +  G+        +K   + E   S      ++     L C       K       
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSS-----PYRIESPELDCEEGWTRLKCGGNQNE 155

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI---KRALTIDPNNRVVK--- 130
                  K LE +P N +     + A  +      ++  I   ++A+ ++P+N+ +K   
Sbjct: 156 RAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL 215

Query: 131 -LVYMELKDKQREYAK 145
            L   +++++  E  +
Sbjct: 216 ALKLHKMREEGEEEGE 231

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
               +R   +  +    +   + I  +      +   A  L           + + E+  
Sbjct: 179 AIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL--------HKMREEGEEEG 230

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E   L  + LE  P     L   ++ + +  E +KA   +K+AL   PNN
Sbjct: 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           GN  ++ G Y  A + Y+KA   +E   +  +             + N      K  DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKA---LELDPNNAE------------AWYNLGNAYYKQGDYD 60

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E      K LEL+P N +A Y    A+ K  + ++A    ++AL +DPNN
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 18/130 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G L      +  A   +     + + H                    N       L++ +
Sbjct: 13  GVLAADKKDWKGALDAFSA---VQDPHSRI---------------CFNIGCMYTILKNMT 54

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136
           E     T+ +  +     A ++R   + +T + + A  D+K AL     N+++    + L
Sbjct: 55  EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114

Query: 137 KDKQREYAKY 146
           + K       
Sbjct: 115 QFKLFACEVL 124

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G    +AG+Y +A    E+            D              L+     +K     
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDA--------DAFDVDV-------ALHLGIAYVKTGAVD 59

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
             + L  + L   P NVK        +++  + + A   + +    +P N
Sbjct: 60  RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G    + G   R ++  E++   +                             ++++ Y 
Sbjct: 49  GIAYVKTGAVDRGTELLERS---LADAPDNVK------------VATVLGLTYVQVQKYD 93

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               L  KV E  P+N    +R   A       ++A    K AL + PN 
Sbjct: 94  LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 62  YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
           Y +      K   YS+   L  +V + +  +V        A++KT  +++    ++R+L 
Sbjct: 11  YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70

Query: 122 IDPNN 126
             P+N
Sbjct: 71  DAPDN 75

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           GN  ++ G Y  A + Y+KA   +E      +             + N      K  DY 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKA---LELDPRSAE------------AWYNLGNAYYKQGDYD 52

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E      K LEL+P + +A Y    A+ K  + ++A    ++AL +DP +
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           GN  ++ G Y  A + Y+KA   +E      +             + N      K  DY 
Sbjct: 42  GNAYYKQGDYDEAIEYYQKA---LELDPRSAE------------AWYNLGNAYYKQGDYD 86

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           E      K LEL+P + +A Y    A+ K  + ++A    ++AL +DP +
Sbjct: 87  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 13/110 (11%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
             +L +  +   A K+ +K             DE      L  +            E   
Sbjct: 137 VQILLKLDRLDLARKELKKMQDQ---------DEDATLTQLATAWVS----LAAGGEKLQ 183

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
           +   +  ++ +     +  L  ++  H+     E AE  ++ AL  D  +
Sbjct: 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 14/111 (12%)

Query: 17  GNLLF-RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY 75
           G  L  R  +   +   ++KA          T    + A        LN   C  K   +
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADP------TYPTPYIA-------NLNKGICSAKQGQF 129

Query: 76  SETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
               +   + L  +P    A    ++  +   +L  A+   K+  +     
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 15/136 (11%), Positives = 45/136 (33%), Gaps = 17/136 (12%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G        Y  +   Y +A ++          E  +      +        +      +
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQL--------RGENAEL----YAALATVLYYQASQHMTA 98

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN----RVVKLV 132
           +T ++  K L L+   + AL   +      +   +A    ++ + ++       ++V+ +
Sbjct: 99  QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158

Query: 133 YM-ELKDKQREYAKYQ 147
            M +L  ++ +   + 
Sbjct: 159 NMAKLLQRRSDLEHHH 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.95
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.93
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.93
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.93
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.92
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.92
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.89
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.87
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.87
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.85
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.85
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.85
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.84
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.84
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.82
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.82
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.81
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.8
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.8
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.8
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.8
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.78
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.78
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.78
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.78
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.77
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.77
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.77
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.76
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.76
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.76
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.74
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.73
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.73
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.72
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.72
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.71
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.71
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.71
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.71
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.7
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.7
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.69
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.69
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.69
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.68
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.67
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.67
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.67
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.67
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.66
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.66
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.66
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.65
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.65
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.65
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.64
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.64
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.64
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.63
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.63
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.63
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.63
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.63
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.63
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.63
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.63
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.62
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.62
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.62
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.62
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.62
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.62
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.61
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.61
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.61
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.61
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.61
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.61
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.6
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.6
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.6
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.6
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.59
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.59
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.59
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.59
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.59
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.59
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.58
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.58
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.58
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.58
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.57
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.57
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.57
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.55
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.55
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.55
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.54
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.53
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.53
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.53
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.52
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.52
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.51
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.51
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.51
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.51
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.5
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.49
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.49
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.49
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.49
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.48
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.47
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.47
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.47
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.47
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.46
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.46
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.46
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.46
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.45
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.45
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.45
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.44
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.44
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.44
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.43
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.43
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.42
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.42
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.41
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.41
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.41
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.41
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.4
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.4
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.39
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.39
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.39
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.38
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.38
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.38
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.37
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.36
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.36
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.36
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.35
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.35
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.34
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.33
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.33
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.32
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.32
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.31
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.3
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.3
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.3
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.3
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.29
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.27
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.26
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.24
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.23
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.23
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.22
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.22
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.22
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.21
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.19
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.18
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.17
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.16
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.15
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.15
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.14
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.13
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.13
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.12
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.1
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.1
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.09
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.08
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.03
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.02
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	99.0
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.94
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.93
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.93
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.82
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.81
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.78
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.76
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.76
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.74
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.74
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.72
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.72
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.68
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.68
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.63
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.62
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.5
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.47
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.44
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.36
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.31
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.18
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	98.1
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.09
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.05
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.92
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.9
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.84
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.82
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.78
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.77
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.77
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.54
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.38
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.21
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	97.12
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.9
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.82
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.76
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	96.73
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.72
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.66
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.51
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	96.43
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.35
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.03
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	95.78
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.77
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	95.43
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.17
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.32
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.23
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.94
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.91
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.86
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	93.73
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	93.34
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.22
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.09
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.65
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	92.14
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.68
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.31
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	91.07
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	90.08
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	89.92
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	89.73
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	89.43
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	88.55
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	87.74
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	87.6
2rkl_A	53	Vacuolar protein sorting-associated protein VTA1;	87.35
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	87.25
2o8p_A	227	14-3-3 domain containing protein; signaling protei	87.0
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	85.9
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	85.89
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	85.59
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	85.19
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	84.68
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	84.24
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	83.77
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	83.13
2npm_A	260	14-3-3 domain containing protein; cell regulator p	82.9
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	82.72
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	81.63
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.97
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	80.74
2yin_A	436	DOCK2, dedicator of cytokinesis protein 2; apoptos	80.69
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	80.66
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	80.62
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	80.6

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.95  E-value=3.6e-27  Score=153.65  Aligned_cols=154  Identities=25%  Similarity=0.349  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC---CCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHH
Q 031461            3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH---SFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS   79 (159)
Q Consensus         3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~   79 (159)
                      +++++..+..++..|+.++..|+|++|+..|.+++.+.+..+   ..+++.+....+....++.++|.|+..+|+|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            567888999999999999999999999999999999865422   22234556667788889999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461           80 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR-VVKLVYMELKDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus        80 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (159)
                      .+|++++.++|+++.+++++|.++..+|++++|+.+|++++.++|+++ .+...+..+...+.+..+.+++.|++||+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  161 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ  161 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999998 88999999999999999999999999996

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.93  E-value=2.4e-24  Score=135.18  Aligned_cols=114  Identities=26%  Similarity=0.391  Sum_probs=108.0

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      +.++.++.+|+.+++.|+|++|+..|.+++.+.|.+               ..++.++|.++..+|++++|+.+|++++.
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~   75 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---------------AILYSNRAACLTKLMEFQRALDDCDTCIR   75 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence            468899999999999999999999999999998776               45599999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      ++|+++.+++++|.++..+|++++|+..|++++.++|+++.++..++.|
T Consensus        76 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999888776

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.93  E-value=1.1e-23  Score=157.77  Aligned_cols=157  Identities=32%  Similarity=0.578  Sum_probs=141.2

Q ss_pred             ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461            2 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL   81 (159)
Q Consensus         2 s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~   81 (159)
                      +.++....+..++..|+.++..|+|.+|+..|.+++.+.|.++...++......++...+++++|.|+..+|+|++|+.+
T Consensus       260 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  339 (457)
T 1kt0_A          260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC  339 (457)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            34667788999999999999999999999999999999998877777777788888899999999999999999999999


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031461           82 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM  158 (159)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (159)
                      |++++.++|+++.+++++|.+|..+|++++|+.+|++++.++|++..++..+..+...+++..+.++..|++||+++
T Consensus       340 ~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~  416 (457)
T 1kt0_A          340 CDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKF  416 (457)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.93  E-value=2.9e-23  Score=149.99  Aligned_cols=156  Identities=33%  Similarity=0.572  Sum_probs=146.7

Q ss_pred             hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461            3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC   82 (159)
Q Consensus         3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   82 (159)
                      .+.....+..+...|+.++..|+|++|+..|.+++.+.|.++....+......++...++.++|.|+..+|+|++|+.+|
T Consensus       140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~  219 (336)
T 1p5q_A          140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC  219 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34566788999999999999999999999999999999988776677777888888999999999999999999999999


Q ss_pred             HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031461           83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM  158 (159)
Q Consensus        83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (159)
                      ++++.++|+++.+++++|.+|..+|++++|+.+|++++.++|++..++..++.+...+++..+.++..|++||+++
T Consensus       220 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          220 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999865

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.92  E-value=8.2e-25  Score=141.16  Aligned_cols=142  Identities=15%  Similarity=0.105  Sum_probs=123.7

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461            1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS   80 (159)
Q Consensus         1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   80 (159)
                      |.|-.....+..+...|+.++..|+|++|+..|.++|.+.|..+....   ....+....+|.|+|.++..+|+|++|+.
T Consensus         2 ~~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a---~~~~~~~a~a~~n~g~al~~Lgr~~eAl~   78 (159)
T 2hr2_A            2 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA---FDHAGFDAFCHAGLAEALAGLRSFDEALH   78 (159)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC---CCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhh---hhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            556667788999999999999999999999999999999998554221   11223345589999999999999999999


Q ss_pred             HHHHHhhc-------CCccHHHH----HHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           81 LCTKVLEL-------EPLNVKAL----YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        81 ~~~~al~~-------~~~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      +|+++|.+       +|+++.+|    +++|.++..+|++++|+.+|++++.++|++..+...+..++..+....+
T Consensus        79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~  154 (159)
T 2hr2_A           79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIA  154 (159)
T ss_dssp             HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999       99999999    9999999999999999999999999999999998888888877766544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.92  E-value=4.2e-23  Score=138.36  Aligned_cols=157  Identities=29%  Similarity=0.425  Sum_probs=131.2

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChH-HHHHHHHHHHHHHhhHHHHHhhhhCHHHHH
Q 031461            1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD-EKHQANGLRLSCYLNNAACKLKLEDYSETS   79 (159)
Q Consensus         1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~   79 (159)
                      |+.+++...+..+...|..++..|+|++|+..|.+++.+.|.++..... .......+...++.++|.++..+|++++|+
T Consensus        29 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  108 (198)
T 2fbn_A           29 YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI  108 (198)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            5778889999999999999999999999999999999998876644332 222234445678999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031461           80 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK  157 (159)
Q Consensus        80 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (159)
                      .++++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.+...+..+...+++..+.++..|+++|+.
T Consensus       109 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998899999874

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.89  E-value=5e-22  Score=145.28  Aligned_cols=155  Identities=30%  Similarity=0.501  Sum_probs=133.8

Q ss_pred             ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461            2 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH-SFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS   80 (159)
Q Consensus         2 s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   80 (159)
                      +.++.+..+..+...|+.++..|+|++|+..|.+++.+.+..+ ...........+....++.++|.++..+|+|++|+.
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            4677888999999999999999999999999999999765432 111122233456667889999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461           81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus        81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (159)
                      ++++++.++|+++.+++++|.+|..+|++++|+..|++++.++|+++.++..+..+...+++..+.++..|++||+
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988898884

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.87  E-value=8e-22  Score=142.59  Aligned_cols=157  Identities=29%  Similarity=0.467  Sum_probs=105.4

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC--CChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHH
Q 031461            1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS--FTDDEKHQANGLRLSCYLNNAACKLKLEDYSET   78 (159)
Q Consensus         1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A   78 (159)
                      |+.++++..+..++..|+.++..|+|++|+..|.+++.+.|.+..  ...........+...+++++|.|+..+|+|++|
T Consensus       170 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A  249 (338)
T 2if4_A          170 MTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEA  249 (338)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            467788999999999999999999999999999999999776531  111122223444456899999999999999999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031461           79 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK  157 (159)
Q Consensus        79 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (159)
                      +.+|++++.++|+++.+++++|.+|..+|++++|+.+|++++.++|+++.++..+..+........+..+..|.++|+.
T Consensus       250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999999999999999999999999999999999999887777777778889888864

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.87  E-value=7.3e-21  Score=118.59  Aligned_cols=117  Identities=25%  Similarity=0.349  Sum_probs=109.3

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .++.+...|..++..|+|++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++.+
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            57889999999999999999999999999997765               455999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTID------PNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~  140 (159)
                      +|+++.+++.+|.++..+|++++|+..|++++.++      |+++.+...+..+...+
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999      99999999888887543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.87  E-value=8.9e-21  Score=118.93  Aligned_cols=113  Identities=23%  Similarity=0.296  Sum_probs=99.4

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      .+.+..++++|+.+++.|+|++|+.+|.+++++.|.+               ..++.++|.++..+|+|++|+.++++++
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---------------~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---------------ITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            4567889999999999999999999999999997765               4569999999999999999999999999


Q ss_pred             hcCCcc-------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461           87 ELEPLN-------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  135 (159)
Q Consensus        87 ~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  135 (159)
                      .++|++       ..+++++|.++...|++++|+.+|++++...|+ +.+...+..
T Consensus        70 ~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  124 (127)
T 4gcn_A           70 EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE  124 (127)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred             HhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence            998865       458999999999999999999999999999885 444444433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.85  E-value=3.9e-20  Score=119.44  Aligned_cols=104  Identities=11%  Similarity=0.111  Sum_probs=98.5

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .++.+...|..++..|+|++|+..|.+++.+.|.+               ..+|.++|.++..+|+|++|+.+|++++.+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---------------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---------------VDYIMGLAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            46788999999999999999999999999998876               345999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      +|+++.+++++|.+|..+|++++|+..|++++.+.|+.+
T Consensus       100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999999999875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.85  E-value=9.8e-20  Score=118.47  Aligned_cols=123  Identities=18%  Similarity=0.158  Sum_probs=110.7

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ...+..+...|..++..|+|++|+..|.+++.+.|.+               ..++.++|.++..+|++++|+.++++++
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al   72 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------------PIYLSNRAAAYSASGQHEKAAEDAELAT   72 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            4568889999999999999999999999999997765               4569999999999999999999999999


Q ss_pred             hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHHHHHH
Q 031461           87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV--VKLVYMELKDKQREYA  144 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~  144 (159)
                      .++|+++.+++.+|.++..+|++++|+.+|++++.++|++..  ....+..++.++.+..
T Consensus        73 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~  132 (164)
T 3sz7_A           73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN  132 (164)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999977  5666666666665543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.85  E-value=5.5e-20  Score=117.18  Aligned_cols=123  Identities=15%  Similarity=0.177  Sum_probs=111.4

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      ....+...|..++..|+|++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++.+
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   81 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---------------ARYFLGLGACRQSLGLYEQALQSYSYGALM   81 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            46778899999999999999999999999997765               345899999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +|+++.+++.+|.++...|++++|+..|++++.+.|+++........+...+....+.
T Consensus        82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~  139 (142)
T 2xcb_A           82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR  139 (142)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999988887777777766665443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.84  E-value=5.4e-20  Score=118.29  Aligned_cols=120  Identities=13%  Similarity=0.135  Sum_probs=108.2

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|+|++|+..|.+++...|.+               ..++.++|.++..+|++++|+.+|++++.+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---------------SRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            46778899999999999999999999999998776               345899999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      +|+++.+++.+|.++...|++++|+..|++++.+.|+++........+...+...
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  139 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI  139 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999887766666666555543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.84  E-value=1.1e-19  Score=117.04  Aligned_cols=115  Identities=15%  Similarity=0.057  Sum_probs=99.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .....+..|..++..|+|++|+.+|.+++++.|.+               ..++.++|.++..+|++++|+.++++++.+
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~   94 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD---------------PKAHRFLGLLYELEENTDKAVECYRRSVEL   94 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            34556778999999999999999999999997776               455899999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHH-HHHHHhcCCCcHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEAD-IKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      +|+++.+++.+|.++...|++++|... +++++.++|+++.+......+..
T Consensus        95 ~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A           95 NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            999999999999999999999887665 58999999999988887777654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.82  E-value=2e-18  Score=116.58  Aligned_cols=133  Identities=11%  Similarity=0.072  Sum_probs=108.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChH-HHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD-EKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      ++.+...|..++..|+|++|+..|.+++...|.++..-.. ...........+..++|.++..+|++++|+.++++++.+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5678889999999999999999999999998865321000 000000011112233999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      +|+++.+++.+|.++...|++++|+..|++++.++|+++.++..++.+....+.
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999999988755544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.82  E-value=6.1e-20  Score=118.20  Aligned_cols=114  Identities=12%  Similarity=0.019  Sum_probs=102.4

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHH
Q 031461           16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA   95 (159)
Q Consensus        16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~   95 (159)
                      +|.++...|+++.|+..|.+++...|..+..               ++++|.+|..+|+|++|+.++++++.++|+++.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~---------------~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a   67 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIK---------------GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA   67 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTT---------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            6888889999999999999999987766443               8899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461           96 LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  144 (159)
Q Consensus        96 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  144 (159)
                      ++.+|.+|...|++++|+..|++++.++|+++.++..++.+....++..
T Consensus        68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  116 (150)
T 4ga2_A           68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD  116 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence            9999999999999999999999999999999999999999987776543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.81  E-value=1.6e-18  Score=108.98  Aligned_cols=121  Identities=26%  Similarity=0.344  Sum_probs=110.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|+|++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++.+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALEL   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            46788999999999999999999999999997765               455999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN-----NRVVKLVYMELKDKQREYA  144 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~  144 (159)
                      +|+++.+++.+|.++...|++++|+..|++++.++|+     +..+...+..+........
T Consensus        73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  133 (137)
T 3q49_B           73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI  133 (137)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998     7888888888876655443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.80  E-value=2.2e-18  Score=135.23  Aligned_cols=131  Identities=14%  Similarity=0.112  Sum_probs=105.6

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..++.+..+|+.+...|++++|+.+|++++++.|.+               ..++.++|.++..+|++++|+.+|+++++
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~---------------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~   71 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---------------AAAHSNLASVLQQQGKLQEALMHYKEAIR   71 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            347888999999999999999999999999997765               34578888888888888888888888888


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      ++|+++.+++++|.++..+|++++|+..|++++.++|++..++..++.+...+++..+... .|.+.
T Consensus        72 l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~-~~~~A  137 (723)
T 4gyw_A           72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA-SYRTA  137 (723)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            8888888888888888888888888888888888888888888888888777776655533 44443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.80  E-value=4e-17  Score=105.33  Aligned_cols=120  Identities=23%  Similarity=0.350  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461            3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC   82 (159)
Q Consensus         3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   82 (159)
                      .......+..+...|..++..|+++.|+..|.+++...|.+               ..++.++|.++..+|++++|+.++
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence            45667889999999999999999999999999999987664               455899999999999999999999


Q ss_pred             HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      ++++.++|.++.+++.+|.++...|++++|+..|++++.+.|.+..+...+..+.
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  125 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  125 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998886666663

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.80  E-value=9.6e-18  Score=103.80  Aligned_cols=125  Identities=27%  Similarity=0.300  Sum_probs=112.7

Q ss_pred             hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461            3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC   82 (159)
Q Consensus         3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   82 (159)
                      .+.....+..+...|..++..|+++.|+..|.+++...|.+               ..++.++|.++...|++++|+.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~   69 (131)
T 2vyi_A            5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---------------AVYFCNRAAAYSKLGNYAGAVQDC   69 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhhchHHHHHHH
Confidence            34456678899999999999999999999999999987654               345899999999999999999999


Q ss_pred             HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      ++++..+|.++.+++.+|.++...|++++|+..|++++.+.|+++.+...++.+...+++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999888888766543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.80  E-value=7.4e-18  Score=102.63  Aligned_cols=114  Identities=23%  Similarity=0.226  Sum_probs=106.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            46788999999999999999999999999987764               345899999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      +|.++.+++.+|.++...|++++|...|++++..+|+++.+...+..+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999888887765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.78  E-value=6.5e-18  Score=114.80  Aligned_cols=120  Identities=20%  Similarity=0.111  Sum_probs=73.3

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|..++..|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+..+++++.++|
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P   70 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQD---------------PEALYWLARTQLKLGLVNPALENGKTLVARTP   70 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            455666777777777777777777777765554               23355666666666666666666666666666


Q ss_pred             ccHHHHHHHHHHHHhh-----------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKT-----------SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      +++.+++.+|.++...           |++++|+..|++++.++|+++.++..++.+....++.++
T Consensus        71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~  136 (217)
T 2pl2_A           71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK  136 (217)
T ss_dssp             TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH
Confidence            6666666666666666           666666666666666666665555555555555444433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.78  E-value=2.5e-17  Score=112.13  Aligned_cols=128  Identities=16%  Similarity=0.159  Sum_probs=110.0

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhc-ccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIE-FHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +.+...|..++..|+|++|+..|.+++...| .+               ..++.++|.++..+|++++|+.++++++.++
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---------------SVTAYNCGVCADNIKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---------------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence            6788999999999999999999999999976 33               3457789999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR-------VVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      |.++.+++.+|.++...|++++|+..|++++.++|+++       .++..++.+....++..+... .|.++
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~a  143 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE-NYKHA  143 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH-HHHHH
Confidence            99999999999999999999999999999999999999       446666666666555544432 44443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.78  E-value=1.1e-17  Score=104.10  Aligned_cols=117  Identities=9%  Similarity=0.072  Sum_probs=104.4

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      +.+...|..++..|+|++|+..|.+++...|.++..            ..++..+|.++...|++++|+.++++++..+|
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------------~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p   70 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT------------PNALYWLGESYYATRNFQLAEAQFRDLVSRYP   70 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            356788999999999999999999999998765421            35688999999999999999999999999999


Q ss_pred             cc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           91 LN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        91 ~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      ++   +.+++.+|.++...|++++|+..|++++...|+++.+......+...
T Consensus        71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            99   89999999999999999999999999999999998887776666543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.78  E-value=5.6e-18  Score=105.24  Aligned_cols=102  Identities=11%  Similarity=0.078  Sum_probs=90.1

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      .....|..++..|++++|+..|.+++...|.+               ..++..+|.++..+|++++|+..+++++.++|+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER---------------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            46788999999999999999999999998776               455899999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  128 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  128 (159)
                      ++.+++.+|.++...|++++|+..|++++.++|++..
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           84 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999999999999998753

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.77  E-value=1.7e-17  Score=103.22  Aligned_cols=117  Identities=27%  Similarity=0.322  Sum_probs=107.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|++++|+..|.+++...|.+               ..++.++|.++...|++++|+.++++++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------AKLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            46788999999999999999999999999986654               455899999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      +|.++.+++.+|.++...|++++|+..|++++.++|.+..+...++.+....
T Consensus        80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999888888876543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.77  E-value=3.7e-17  Score=101.21  Aligned_cols=119  Identities=22%  Similarity=0.255  Sum_probs=107.9

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|+++.|+.+|.+++...|.+               ..++.++|.++..+|++++|+.++++++.+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            56788999999999999999999999999987654               455899999999999999999999999999


Q ss_pred             CCcc-------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           89 EPLN-------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        89 ~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      .|.+       +.+++.+|.++...|++++|+..|++++...| ++.+...+..+...+++.
T Consensus        68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            8877       89999999999999999999999999999999 688888888887776654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.7e-17  Score=105.11  Aligned_cols=117  Identities=34%  Similarity=0.508  Sum_probs=106.5

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|+|++|+..|.+++...|.+            +....++.++|.++..+|++++|+.++++++.+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            36778899999999999999999999999986653            123566899999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      +|.++.+++.+|.++...|++++|+..|++++.++|+++.+...+..+.
T Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888877764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.76  E-value=1.3e-17  Score=130.93  Aligned_cols=122  Identities=16%  Similarity=0.210  Sum_probs=112.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+..+|..+...|++++|+..|++++++.|.+               ..++.++|.++..+|++++|+.+|+++++++
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~  107 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN  107 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            5668889999999999999999999999997765               4569999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      |+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+...+++..+.
T Consensus       108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A          108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            999999999999999999999999999999999999999999999998777655443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.76  E-value=8e-17  Score=106.11  Aligned_cols=146  Identities=12%  Similarity=0.064  Sum_probs=113.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------H------HHHHHHHHHHHHHhhHHHHH
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------D------EKHQANGLRLSCYLNNAACK   69 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------~------~~~~~~~~~~~~~~~~a~~~   69 (159)
                      .+..+...|..++..|+|++|+..|++++++.|.++..-.             .      ......+-...++..+|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            3567889999999999999999999999999876532100             0      00011111234566777888


Q ss_pred             hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAE  149 (159)
Q Consensus        70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  149 (159)
                      ...++++.|...+.+++.++|.++.++..+|.++...|++++|+..|++++.++|+++.++..++.+...+++..+... 
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~-  162 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK-  162 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH-
Confidence            8888888888888888888888899999999999999999999999999999999999999999999988888766543 


Q ss_pred             HHHHHh
Q 031461          150 IFGTML  155 (159)
Q Consensus       150 ~~~~~~  155 (159)
                      .|.+..
T Consensus       163 ~~~~al  168 (184)
T 3vtx_A          163 YFKKAL  168 (184)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.76  E-value=6.1e-17  Score=109.95  Aligned_cols=128  Identities=16%  Similarity=0.092  Sum_probs=103.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh-----------hCHHHH
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-----------EDYSET   78 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A   78 (159)
                      +..+...|..+...|++++|+..|.+++.+.|.+               ..++.++|.++..+           |++++|
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A  103 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRY---------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQA  103 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence            4567889999999999999999999999998765               34477888888888           888888


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           79 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus        79 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      +..+++++.++|+++.+++.+|.++...|++++|+..|++++.++ +++.++..++.+....++..+... .|.++
T Consensus       104 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~-~~~~a  177 (217)
T 2pl2_A          104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALA-QYAKA  177 (217)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            888888888888888888888888888888888888888888888 778888888888777776655432 44443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.74  E-value=4.5e-17  Score=119.56  Aligned_cols=78  Identities=14%  Similarity=0.040  Sum_probs=40.7

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      |.++|.++..+|++++|+.+|+++|.++|++..+|+++|.++..+|++++|+.+|++++.++|++..++..++.+...
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            455555555555555555555555555555555555555555555555555555555555555555555555554444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.73  E-value=7.2e-16  Score=94.46  Aligned_cols=115  Identities=30%  Similarity=0.374  Sum_probs=105.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+...|..++..|++++|+..|.+++...|.+               ..++..+|.++...|++++|+.++++++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            5678889999999999999999999999986643               3458899999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      |.++.+++.+|.++...|++++|+..|++++...|+++.+...++.+...
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998888877644

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.73  E-value=7.1e-16  Score=101.51  Aligned_cols=119  Identities=13%  Similarity=0.030  Sum_probs=94.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------------HHHHHHHHHHHHHHhhHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------------DEKHQANGLRLSCYLNNAACKL   70 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~a~~~~   70 (159)
                      +..+...|..++..|++++|+..+.+++...+..+....                   .......+....++..+|.++.
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~  118 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD  118 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            455677788888888888888888888877655321110                   0001112223456889999999


Q ss_pred             hhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461           71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  128 (159)
Q Consensus        71 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  128 (159)
                      .+|++++|+.+++++++++|.++.+++.+|.+|..+|++++|+..|+++++++|+++.
T Consensus       119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            9999999999999999999999999999999999999999999999999999998753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.72  E-value=1.2e-16  Score=117.23  Aligned_cols=123  Identities=14%  Similarity=0.006  Sum_probs=111.1

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhC-HHHHHHHHHHHhh
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED-YSETSSLCTKVLE   87 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~   87 (159)
                      .+..+...|..+...|++++|+..|.+++.+.|.+               ..+|.++|.++..+|+ +++|+.++++++.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~---------------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~  160 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN---------------YTVWHFRRVLLKSLQKDLHEEMNYITAIIE  160 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC---------------HHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence            46778889999999999999999999999997765               4569999999999996 9999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      ++|++..+|+.+|.++..+|++++|+.+|++++.++|++..++..++.+...+++..+.
T Consensus       161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA  219 (382)
T 2h6f_A          161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE  219 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred             HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH
Confidence            99999999999999999999999999999999999999999999999998887766543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.72  E-value=1.1e-15  Score=103.88  Aligned_cols=118  Identities=17%  Similarity=0.101  Sum_probs=108.0

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|..++..|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++.++|
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  107 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP  107 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            345668999999999999999999999987764               45699999999999999999999999999999


Q ss_pred             ccH-------HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHH
Q 031461           91 LNV-------KALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELKDKQREY  143 (159)
Q Consensus        91 ~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~  143 (159)
                      +++       .+++.+|.++...|++++|+..|++++.++|+  ++.++..++.+....+..
T Consensus       108 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          108 GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            998       77999999999999999999999999999999  889999999988776665

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.71  E-value=4.1e-17  Score=100.44  Aligned_cols=103  Identities=13%  Similarity=0.090  Sum_probs=86.4

Q ss_pred             HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 031461           22 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ  101 (159)
Q Consensus        22 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  101 (159)
                      ..|++++|+..|.+++...+.+|.            ...++.++|.++..+|++++|+.++++++.++|+++.+++.+|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            468999999999999998321111            25669999999999999999999999999999999999999999


Q ss_pred             HHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461          102 AHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus       102 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      ++...|++++|+..|++++...|+++.+......+
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            99999999999999999999999998876554444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.71  E-value=2.7e-17  Score=106.05  Aligned_cols=96  Identities=9%  Similarity=-0.001  Sum_probs=88.7

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ..+++++|.++...|++++|+.+|++++.++|.++.+|+.+|.++...|++++|+..|++++.++|+++.++..++.+..
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 031461          139 KQREYAKYQAEIFGTML  155 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~~~  155 (159)
                      .+++..+... .|.++.
T Consensus       116 ~lg~~~eA~~-~~~~al  131 (151)
T 3gyz_A          116 RLKAPLKAKE-CFELVI  131 (151)
T ss_dssp             HTTCHHHHHH-HHHHHH
T ss_pred             HcCCHHHHHH-HHHHHH
Confidence            9988877644 565554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.71  E-value=1.5e-16  Score=102.46  Aligned_cols=104  Identities=13%  Similarity=0.092  Sum_probs=92.2

Q ss_pred             HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCH----------HHHHHHHHHHhhcCC
Q 031461           21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY----------SETSSLCTKVLELEP   90 (159)
Q Consensus        21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~~   90 (159)
                      -+.++|++|+..|.+++.+.|.+               ..++.++|.++..++++          ++|+..|+++|.++|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~---------------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP   77 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLD---------------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc
Confidence            35678999999999999998876               44589999999999875          599999999999999


Q ss_pred             ccHHHHHHHHHHHHhhC-----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTS-----------ELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      ++..+++++|.+|..+|           ++++|+.+|++|+.++|++......+..+...
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka  137 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  137 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence            99999999999999885           89999999999999999998877777665543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.71  E-value=5e-16  Score=109.44  Aligned_cols=102  Identities=28%  Similarity=0.416  Sum_probs=96.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+...|+.++..|+|++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++.++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            5678899999999999999999999999997765               4559999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      |+++.+++.+|.++..+|++++|+..|++++.++|++
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.71  E-value=1.5e-15  Score=105.36  Aligned_cols=119  Identities=13%  Similarity=0.111  Sum_probs=99.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh--------hhCHHHHHHH
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK--------LEDYSETSSL   81 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--------~~~~~~A~~~   81 (159)
                      ...+...|..++..|+|++|+..|.+++...|.++..            ..+++.+|.++..        +|++++|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV------------PQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH------------HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh------------HHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            4556677777777777777777777777776655432            4668999999999        9999999999


Q ss_pred             HHHHhhcCCccHHHH-----------------HHHHHHHHhhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHH
Q 031461           82 CTKVLELEPLNVKAL-----------------YRRSQAHLKTSELEKAEADIKRALTIDPN---NRVVKLVYMELKDKQ  140 (159)
Q Consensus        82 ~~~al~~~~~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~  140 (159)
                      +++++..+|+++.+.                 +.+|.+|...|++++|+..|++++...|+   .+.+...++.+...+
T Consensus       120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            999999999986666                 88999999999999999999999999998   466888888888766

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.70  E-value=9.4e-16  Score=102.98  Aligned_cols=127  Identities=17%  Similarity=0.142  Sum_probs=110.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|+|++|+..|.+++.  + +               ..++.++|.++..+|++++|+.++++++.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~-~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   66 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD--P-H---------------SRICFNIGCMYTILKNMTEAEKAFTRSINR   66 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS--C-C---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC--C-C---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            356688999999999999999999999852  1 1               356999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR----------------VVKLVYMELKDKQREYAKYQAEIFG  152 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  152 (159)
                      +|.++.+++.+|.++...|++++|+..|++++.+.|.+.                .++..++.+...+++..+... .|.
T Consensus        67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~  145 (213)
T 1hh8_A           67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE-QLA  145 (213)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred             CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH-HHH
Confidence            999999999999999999999999999999999888876                889999999888777655533 444


Q ss_pred             HH
Q 031461          153 TM  154 (159)
Q Consensus       153 ~~  154 (159)
                      ++
T Consensus       146 ~a  147 (213)
T 1hh8_A          146 LA  147 (213)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.70  E-value=1.8e-15  Score=102.10  Aligned_cols=107  Identities=15%  Similarity=0.114  Sum_probs=91.8

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK   94 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~   94 (159)
                      ..|..++..|++++|+..|.+++.+.|.+               ..++.++|.++..+|++++|+.+|++++.++|+++.
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKAPNN---------------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            39999999999999999999999998776               455999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh-----------------------------------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           95 ALYRRSQAHLKT-----------------------------------SELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        95 ~~~~~~~~~~~~-----------------------------------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      +++.+|.+|+..                                   |++++|+.+|++++.+.|++ .+...+..+.
T Consensus       124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~  200 (208)
T 3urz_A          124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence            988888776433                                   46889999999999999974 3444455543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.69  E-value=6.8e-16  Score=107.12  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=98.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ++.+...|..++..|+|++|+..|.+++...|.++..            ..+++.+|.++..+|+|++|+..+++++.+.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWA------------ADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTH------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            5778999999999999999999999999998765432            5669999999999999999999999999998


Q ss_pred             Ccc---HHHHHHHHHHHHh--------hCCHHHHHHHHHHHHhcCCCcHHHH
Q 031461           90 PLN---VKALYRRSQAHLK--------TSELEKAEADIKRALTIDPNNRVVK  130 (159)
Q Consensus        90 ~~~---~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~  130 (159)
                      |++   +.+++.+|.++..        .|++++|+..|++++...|+++.+.
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence            854   7789999999999        9999999999999999999987666

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.69  E-value=3e-15  Score=98.04  Aligned_cols=114  Identities=12%  Similarity=0.125  Sum_probs=102.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHH-HhhhhCH--HHHHHHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC-KLKLEDY--SETSSLCTKVL   86 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al   86 (159)
                      ...+...|..++..|++++|+.+|.+++.+.|.+               ..++.++|.+ +...|++  ++|+.++++++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al  108 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---------------AELYAALATVLYYQASQHMTAQTRAMIDKAL  108 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            4668889999999999999999999999998765               3458899999 8899999  99999999999


Q ss_pred             hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      .++|+++.+++.+|.++...|++++|+..|++++.++|+++.....+..+..
T Consensus       109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~  160 (177)
T 2e2e_A          109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM  160 (177)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998766655555543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.69  E-value=1.7e-15  Score=108.23  Aligned_cols=122  Identities=24%  Similarity=0.282  Sum_probs=109.9

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ......|..++..|++++|+..|.+++...|.++.           ....++..+|.++...|++++|+.++++++.++|
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  303 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE-----------YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP  303 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH-----------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            34556799999999999999999999999776432           2345678899999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      +++.+++.+|.++...|++++|+..|++++.++|+++.+...+..+...+++.
T Consensus       304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS  356 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999998877764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.68  E-value=2.9e-16  Score=118.29  Aligned_cols=118  Identities=24%  Similarity=0.340  Sum_probs=108.3

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..++.+...|..++..|+|++|+..|.++++..|.+               ..++.++|.++..+|++++|+.+++++++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   68 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDATRAIE   68 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            456778889999999999999999999999997765               45699999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      ++|+++.+++++|.+|..+|++++|+..|++++.++|++..++..++.+....
T Consensus        69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  121 (477)
T 1wao_1           69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  121 (477)
T ss_dssp             SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988888874333

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.67  E-value=1.1e-15  Score=95.56  Aligned_cols=96  Identities=18%  Similarity=0.144  Sum_probs=88.3

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ...+.++|..++..|+|++|+.+|++++.++|.++.+++.+|.++..+|++++|+..|++++.++|++..++..++.+..
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            56689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 031461          139 KQREYAKYQAEIFGTML  155 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~~~  155 (159)
                      .+++..+... .|.++.
T Consensus        93 ~~~~~~~A~~-~~~~al  108 (126)
T 4gco_A           93 AMREWSKAQR-AYEDAL  108 (126)
T ss_dssp             HTTCHHHHHH-HHHHHH
T ss_pred             HCCCHHHHHH-HHHHHH
Confidence            9888866543 555543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.67  E-value=6.6e-15  Score=91.05  Aligned_cols=128  Identities=24%  Similarity=0.303  Sum_probs=111.1

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      +.+...|..++..|++++|+..|.+++...|.+               ..++..+|.++...|++++|+..+++++...|
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   66 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP   66 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence            356778999999999999999999999986543               34588899999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      .++.+++.+|.++...|++++|+..+.+++...|.+..+...++.+....++..+... .+..+
T Consensus        67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~  129 (136)
T 2fo7_A           67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE-YYQKA  129 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHH
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH-HHHHH
Confidence            9999999999999999999999999999999999999998888888877666654432 44443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.67  E-value=5.8e-16  Score=93.35  Aligned_cols=102  Identities=21%  Similarity=0.191  Sum_probs=94.1

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|..++..|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++.++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   71 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---------------SKYWLMKGKALYNLERYEEAVDCYNYVINVIE   71 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            456778999999999999999999999997654               34589999999999999999999999999999


Q ss_pred             c--cHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCcH
Q 031461           91 L--NVKALYRRSQAHLKT-SELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        91 ~--~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~  127 (159)
                      .  ++.+++.+|.++... |++++|+.++.+++...|.++
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            9  999999999999999 999999999999999999764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=3.5e-15  Score=102.28  Aligned_cols=112  Identities=26%  Similarity=0.353  Sum_probs=84.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+...|..++..|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++.++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            4556677777888888888888888888776554               3447778888888888888888888888888


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTID------PNNRVVKLVYMEL  136 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~  136 (159)
                      |+++.+++.+|.++...|++++|+..|++++.+.      |++..+...+..+
T Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            8888888888888888888888888888888777      7777766665543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.66  E-value=1.5e-14  Score=94.27  Aligned_cols=121  Identities=17%  Similarity=0.155  Sum_probs=91.0

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|..++..|++++|+..|.+++...|.+               ..++.++|.++...|++++|..++++++...|
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  107 (186)
T 3as5_A           43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDN---------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP  107 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence            445566666677777777777777777664433               34577788888888888888888888888888


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      .++.+++.+|.++...|++++|+..+++++...|.++.+...++.+....++..+.
T Consensus       108 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A          108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence            88888888888888888888888888888888888888888777777766655443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=8.1e-15  Score=100.42  Aligned_cols=144  Identities=16%  Similarity=0.151  Sum_probs=117.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-----------HHHHHHHHHHHHHHhhHHHHHhhhhCHHHH
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-----------DEKHQANGLRLSCYLNNAACKLKLEDYSET   78 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A   78 (159)
                      +..+...|..+...|++++|+..|.+++.+.+.......           .......+....++.++|.++...|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            678889999999999999999999999997543110000           000001233456789999999999999999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           79 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus        79 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      +.++++++..+|.++.+++.+|.++...|++++|+..|++++...|+++.++..++.+...+++..+... .|.++
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a  233 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE-TLDAA  233 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888777655432 44443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.66  E-value=2.1e-14  Score=99.42  Aligned_cols=114  Identities=18%  Similarity=0.093  Sum_probs=103.5

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..+..+...|..++..|++++|+..|.+++...|.+               ..++.++|.++...|++++|+.++++++.
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~  105 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE  105 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            457788899999999999999999999999997764               45589999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      ++|.++.+++.+|.++...|++++|+..|++++.+.|+++........+
T Consensus       106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999999999998665555544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.65  E-value=4.8e-15  Score=111.47  Aligned_cols=121  Identities=11%  Similarity=0.031  Sum_probs=111.6

Q ss_pred             HHHHHhhhHHHHc---------ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh--------h
Q 031461           11 ERKKHDGNLLFRA---------GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--------E   73 (159)
Q Consensus        11 ~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~   73 (159)
                      ..+...|..+...         |++++|+..|.+++.+.|.+               ..++.++|.++..+        |
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD---------------GRSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHHHhhccccc
Confidence            5677788999999         99999999999999997765               44589999999999        9


Q ss_pred             CHHHHHHHHHHHhhcCC---ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           74 DYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        74 ~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      ++++|+.++++++.++|   .++.+++.+|.+|...|++++|+..|++++.++|+++.++..++.+...+++..+.
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA  311 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL  311 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   99999999999999999999999999999999999999999999998888876554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.65  E-value=1.3e-14  Score=98.91  Aligned_cols=110  Identities=14%  Similarity=0.150  Sum_probs=97.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ++.+...|..++..|+|++|+..|.+++...|.++..            ..+++++|.++..+|+|++|+..+++++..+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS------------QQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            4567889999999999999999999999987765432            4568999999999999999999999999999


Q ss_pred             CccHH---HHHHHHHHHHh------------------hCCHHHHHHHHHHHHhcCCCcHHHHH
Q 031461           90 PLNVK---ALYRRSQAHLK------------------TSELEKAEADIKRALTIDPNNRVVKL  131 (159)
Q Consensus        90 ~~~~~---~~~~~~~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~  131 (159)
                      |+++.   +++.+|.++..                  .|++++|+..|++++...|+++.+..
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            99864   89999999986                  57999999999999999999976554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.65  E-value=8.7e-15  Score=111.98  Aligned_cols=129  Identities=11%  Similarity=0.045  Sum_probs=115.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+...|..++..|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++.++
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   87 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---------------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA   87 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            5678889999999999999999999999997765               4558999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ---REYAKYQAEIFGTM  154 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  154 (159)
                      |+++.+++.+|.++...|++++|+..|++++.++|++..++..++.+...+   ++..+... .+.+.
T Consensus        88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~-~~~~a  154 (568)
T 2vsy_A           88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA-QVRAA  154 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH-HHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH-HHHHH
Confidence            999999999999999999999999999999999999999999999998887   66655433 44443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.64  E-value=6.6e-15  Score=110.74  Aligned_cols=128  Identities=12%  Similarity=-0.008  Sum_probs=114.9

Q ss_pred             HHHHHHhhhHHHHcccH-HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461           10 CERKKHDGNLLFRAGKY-WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      +..+...|..++..|+| ++|+.+|.+++.+.|.+               ..++.++|.++..+|++++|+.+|++++.+
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---------------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            56688899999999999 99999999999997765               455999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhh---------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKT---------SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ--------REYAKYQAEIF  151 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~~  151 (159)
                      +|+ ..++..+|.++...         |++++|+..|++++.++|++..++..++.+...+        ++..+... .|
T Consensus       167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~-~~  244 (474)
T 4abn_A          167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS-AY  244 (474)
T ss_dssp             CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HH
T ss_pred             CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH-HH
Confidence            998 79999999999999         9999999999999999999999999999999887        76655533 44


Q ss_pred             HHH
Q 031461          152 GTM  154 (159)
Q Consensus       152 ~~~  154 (159)
                      .+.
T Consensus       245 ~~a  247 (474)
T 4abn_A          245 AQA  247 (474)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.64  E-value=4.1e-15  Score=103.07  Aligned_cols=74  Identities=5%  Similarity=-0.047  Sum_probs=48.7

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      ++.++|.++..+|++++|+.++++++.++|.++.++..+|.++...|++++|+..|++++.++|.++.++..++
T Consensus        76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A           76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            35666666666666666666666666666666666666666666666666666666666666666666666665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.64  E-value=1.3e-14  Score=94.49  Aligned_cols=123  Identities=16%  Similarity=0.115  Sum_probs=111.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|++++|+..|.+++...|.+               ..++..+|.++...|++++|+.++++++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   71 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---------------VDVALHLGIAYVKTGAVDRGTELLERSLAD   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            46778899999999999999999999999876653               455889999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +|.++.+++.+|.++...|++++|...+++++...|.++.+...++.+....++..+.
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A  129 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA  129 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHH
Confidence            9999999999999999999999999999999999999999999999888777666544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.63  E-value=3.5e-14  Score=96.60  Aligned_cols=118  Identities=18%  Similarity=0.151  Sum_probs=67.9

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|..++..|++++|+..|.+++...|.+               ..++..+|.++..+|++++|+..+++++..+|
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  122 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELDSSA---------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM  122 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            445556666666666666666666666664432               23355555555555555555555555555555


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      .++.+++.+|.++...|++++|+..+++++...|.+..+...++.+....++.
T Consensus       123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A          123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence            55555555555555555555555555555555555555555555555444433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.63  E-value=2e-14  Score=102.65  Aligned_cols=111  Identities=23%  Similarity=0.249  Sum_probs=102.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ++.+...|..++..|+|++|+..|.+++...|.+               ..++..+|.++..+|++++|+.++++++.++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIALK   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            5778999999999999999999999999987765               3458999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC---CcHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP---NNRVVKLVYME  135 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~  135 (159)
                      |+++.+++.+|.++...|++++|+..|++++...|   +++.+...+..
T Consensus        68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (359)
T 3ieg_A           68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK  116 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence            99999999999999999999999999999999999   88888777743

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.63  E-value=2e-14  Score=97.87  Aligned_cols=132  Identities=7%  Similarity=-0.021  Sum_probs=109.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh------------------
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK------------------   71 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------   71 (159)
                      ...+...|..++..|+|++|+..|.+++...|.++..            ..+++.+|.++..                  
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~  108 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRD  108 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH------------HHHHHHHHHHHHHHHC--------------C
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence            3567888999999999999999999999998876542            2346777777765                  


Q ss_pred             hhCHHHHHHHHHHHhhcCCccHHHH-----------------HHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH---HHHH
Q 031461           72 LEDYSETSSLCTKVLELEPLNVKAL-----------------YRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKL  131 (159)
Q Consensus        72 ~~~~~~A~~~~~~al~~~~~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  131 (159)
                      +|++++|+..+++++...|+++.+.                 +.+|.+|...|++++|+..|++++...|+++   .+..
T Consensus       109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  188 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP  188 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence            6899999999999999999987654                 6789999999999999999999999999986   5678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 031461          132 VYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      .++.+...+++..+... .+..+
T Consensus       189 ~l~~~~~~~g~~~~A~~-~~~~l  210 (225)
T 2yhc_A          189 LMENAYRQMQMNAQAEK-VAKII  210 (225)
T ss_dssp             HHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHcCCcHHHHH-HHHHH
Confidence            88888888877766533 44443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.63  E-value=2.1e-15  Score=118.01  Aligned_cols=120  Identities=12%  Similarity=0.105  Sum_probs=89.1

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      +.+...|..++..|++++|+..|.+++...|.+               ..+++++|.++..+|++++|+..|+++++++|
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  498 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR---------------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFP  498 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            456677778888888888888888888876665               34477777777777777777777777777777


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +++.+++.+|.++...|++++ +..|++++.++|++..++..++.+...+++.++.
T Consensus       499 ~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A  553 (681)
T 2pzi_A          499 GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA  553 (681)
T ss_dssp             TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence            777777777777777777777 7777777777777777777777777666665444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.63  E-value=7.6e-15  Score=105.72  Aligned_cols=122  Identities=14%  Similarity=0.106  Sum_probs=100.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+...|..+...|++++|+..|.+++...|.+               ..++.++|.++...|++++|+.++++++.++
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  281 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------------YLLWNKLGATLANGNQSEEAVAAYRRALELQ  281 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4556777888888888888888888888886554               3457888888888888888888888888888


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-----------HHHHHHHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-----------RVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~~~~~~~~~~~~~~~  146 (159)
                      |+++.+++.+|.++...|++++|+..|++++.+.|++           ..++..++.+...+++.++.
T Consensus       282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            8888888888888888889988888888888888877           77888888888777665443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.63  E-value=8.5e-15  Score=105.75  Aligned_cols=127  Identities=13%  Similarity=-0.012  Sum_probs=104.6

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV   93 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~   93 (159)
                      ...|..+...|++++|+..|.+++...|....             ..++.++|.++..+|++++|+.++++++.++|+++
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  247 (365)
T 4eqf_A          181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMID-------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY  247 (365)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHSCSSCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            34588899999999999999999999776221             34588999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           94 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      .++..+|.++...|++++|+..|++++.++|+++.++..++.+...+++..+... .|.++
T Consensus       248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a  307 (365)
T 4eqf_A          248 SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS-NFLTA  307 (365)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence            9999999999999999999999999999999999999999999888776655432 44433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.63  E-value=2.3e-14  Score=97.52  Aligned_cols=122  Identities=15%  Similarity=0.070  Sum_probs=105.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ...+...|..+...|++++|+..|.+++...|.+               ..++..+|.++...|++++|+..+++++...
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  155 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELN  155 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            4556778999999999999999999999987654               3458889999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      |.++.+++.+|.++...|++++|+..|++++...|+++.++..++.+....++..+.
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  212 (243)
T 2q7f_A          156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA  212 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence            999999999999999999999999999999999999998888888888776665444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.63  E-value=2e-15  Score=96.75  Aligned_cols=108  Identities=9%  Similarity=0.005  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHH
Q 031461           31 KKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE  110 (159)
Q Consensus        31 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  110 (159)
                      ..|.+++.+.|.+               ...++++|.++...|++++|+..+++++.++|.++.+++.+|.++...|+++
T Consensus         8 ~~~~~al~~~p~~---------------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~   72 (148)
T 2vgx_A            8 GTIAMLNEISSDT---------------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD   72 (148)
T ss_dssp             CSHHHHTTCCHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHcCCHhh---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH
Confidence            3466777766554               4558899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461          111 KAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       111 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      +|+..|++++.++|+++.++..++.+...+++..+... .|.++
T Consensus        73 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~a  115 (148)
T 2vgx_A           73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAES-GLFLA  115 (148)
T ss_dssp             HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            99999999999999999999999999988877766543 44443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.62  E-value=6.2e-14  Score=94.11  Aligned_cols=136  Identities=17%  Similarity=0.042  Sum_probs=73.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC-------------hH------HHHHHHHHHHHHHhhHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-------------DD------EKHQANGLRLSCYLNNAACKL   70 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------------~~------~~~~~~~~~~~~~~~~a~~~~   70 (159)
                      +..+...|..++..|++++|+..|.+++...|.++..-             +.      ......+....++.++|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            45556666666666666666666666666654321100             00      000000001234555666666


Q ss_pred             hh-hCHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           71 KL-EDYSETSSLCTKVLE--LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        71 ~~-~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      .. |++++|+.++++++.  ..|.++.+++.+|.++...|++++|+..|.+++...|.+..+...++.+....++..+
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence            66 666666666666666  4455556666666666666666666666666666666666666666665555554443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.62  E-value=2.8e-14  Score=105.42  Aligned_cols=121  Identities=24%  Similarity=0.288  Sum_probs=107.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ......|..++..|++++|+..|.+++...|.++.           ....++.++|.++..+|++++|+.++++++.++|
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE-----------YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH-----------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH-----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            34456699999999999999999999998776432           2345689999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      +++.+++.+|.++...|++++|+..|++++.++|+++.++..++.+...+++
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999987666544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.62  E-value=1.5e-14  Score=97.04  Aligned_cols=103  Identities=17%  Similarity=0.108  Sum_probs=94.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+...|..++..|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++.+.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            3567889999999999999999999999997654               4558999999999999999999999999988


Q ss_pred             CccH----------------HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461           90 PLNV----------------KALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        90 ~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      |.+.                .+++.+|.++...|++++|+..|++++.+.|++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            7766                9999999999999999999999999999999764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.62  E-value=8.7e-16  Score=120.12  Aligned_cols=114  Identities=11%  Similarity=-0.011  Sum_probs=105.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ...+..+|..++..|++++|+..|.+++.+.|.++               .++.++|.++..+|++++ +.+|+++++++
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---------------~~~~~lg~~~~~~g~~~~-~~~~~~al~~~  530 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL---------------APKLALAATAELAGNTDE-HKFYQTVWSTN  530 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS---------------HHHHHHHHHHHHHTCCCT-TCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHcCChHH-HHHHHHHHHhC
Confidence            45688899999999999999999999999988764               348999999999999999 99999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      |+++.+++++|.++..+|++++|+..|++++.++|++..++..++.+...
T Consensus       531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999888888644

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.62  E-value=1e-14  Score=106.16  Aligned_cols=118  Identities=15%  Similarity=0.156  Sum_probs=70.0

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      .+...|..++..|++++|+..|.+++...|.+               ..++.++|.++...|++++|+..+++++.++|.
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  303 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHF---------------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT  303 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence            34445555555555555555555555554432               233556666666666666666666666666666


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  144 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  144 (159)
                      ++.++..+|.++...|++++|+..|++++.+.|++..++..++.+....++..
T Consensus       304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  356 (388)
T 1w3b_A          304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ  356 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence            66666666666666666666666666666666666666666666555544443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.62  E-value=1.2e-14  Score=104.97  Aligned_cols=122  Identities=14%  Similarity=0.139  Sum_probs=108.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+...|..+...|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++.++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---------------YSLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            4567889999999999999999999999997765               4458999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------------HHHHHHHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------------RVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~~~~~~~~~~~~~~~  146 (159)
                      |+++.+++.+|.++...|++++|+..|++++.+.|++            ..++..++.+...+++.+..
T Consensus       278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  346 (365)
T 4eqf_A          278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF  346 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence            9999999999999999999999999999999998873            56777888887777665443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.61  E-value=4.1e-14  Score=102.99  Aligned_cols=136  Identities=15%  Similarity=0.084  Sum_probs=77.3

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC--------------ChH-----HHHHHHHHHHHHHhhHHHHHhh
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF--------------TDD-----EKHQANGLRLSCYLNNAACKLK   71 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------~~~-----~~~~~~~~~~~~~~~~a~~~~~   71 (159)
                      ..+...|..+...|++++|+..|.+++...|..+..              +..     ......+-...++.++|.++..
T Consensus       170 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  249 (388)
T 1w3b_A          170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE  249 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH
Confidence            345556667777777777777777777765543110              000     0000111123345566666666


Q ss_pred             hhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           72 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        72 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      .|++++|+..+++++.++|+++.++..+|.++...|++++|+..|++++.+.|.++.++..++.+....++..+.
T Consensus       250 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  324 (388)
T 1w3b_A          250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence            666666666666666666666666666666666666666666666666666666666666666665555544433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.61  E-value=1e-13  Score=93.05  Aligned_cols=120  Identities=13%  Similarity=0.086  Sum_probs=93.2

Q ss_pred             HHHhhhHHHHc-ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           13 KKHDGNLLFRA-GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        13 ~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      +...|..++.. |++++|+..|.+++. .+..+.            ...++.++|.++...|++++|+.++++++...|.
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  145 (225)
T 2vq2_A           79 NNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPT------------PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ  145 (225)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSC------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34444455555 555555555555544 111111            2466889999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDP-NNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      ++.+++.+|.++...|++++|+..+++++...| .++.+......+....+....
T Consensus       146 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (225)
T 2vq2_A          146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQA  200 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHH
Confidence            999999999999999999999999999999999 999888777777666655443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.61  E-value=8.1e-14  Score=95.58  Aligned_cols=78  Identities=17%  Similarity=0.175  Sum_probs=33.6

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLE--LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      +.++|.++...|++++|+.++++++.  ..|.++.+++.+|.++...|++++|+..|.+++...|.+..+...++.+...
T Consensus       108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  187 (252)
T 2ho1_A          108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK  187 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            33444444444444444444444444  3344444444444444444444444444444444444444444444443333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.61  E-value=2.9e-14  Score=100.65  Aligned_cols=130  Identities=12%  Similarity=0.043  Sum_probs=105.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH--------
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL--------   81 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~--------   81 (159)
                      .+.+...|..+...|++++|+..|.+++...|.++               .++.++|.++...|++++|+..        
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG---------------EIGLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH---------------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch---------------hHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            45678899999999999999999999999988763               3477777777777777766554        


Q ss_pred             --------------------------HHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc--HHHHHHH
Q 031461           82 --------------------------CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVY  133 (159)
Q Consensus        82 --------------------------~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~  133 (159)
                                                +++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++  ..++..+
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence                                      445566789999999999999999999999999999999999998  8899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 031461          134 MELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                      ..+...+++..+... .|++.+
T Consensus       262 ~~~~~~~g~~~~a~~-~~r~al  282 (287)
T 3qou_A          262 QEILAALGTGDALAS-XYRRQL  282 (287)
T ss_dssp             HHHHHHHCTTCHHHH-HHHHHH
T ss_pred             HHHHHHcCCCCcHHH-HHHHHH
Confidence            999888876554432 444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.61  E-value=4e-14  Score=105.87  Aligned_cols=107  Identities=30%  Similarity=0.301  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      +...++.+...|+.++..|+|++|+..|.+++...|+                ..++.++|.++..+|++++|+.+++++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----------------PVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            4567899999999999999999999999999999752                355899999999999999999999999


Q ss_pred             hhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461           86 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  128 (159)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  128 (159)
                      +.++|+++.+++.+|.++...|++++|+..|++++...|.+..
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence            9999999999999999999999999999999999999986643

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.61  E-value=2e-14  Score=94.35  Aligned_cols=131  Identities=14%  Similarity=0.108  Sum_probs=95.4

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHH-------------
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSE-------------   77 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------------   77 (159)
                      +.....|..++..|++++|+..|.+++...|.++               .++.++|.++...|++++             
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p   71 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG---------------DVKLAKADCLLETKQFELAQELLATIPLEYQ   71 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH---------------HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence            3456677777888888888888888887776642               224444444444444444             


Q ss_pred             ---------------------HHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc--HHHHHHHH
Q 031461           78 ---------------------TSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVYM  134 (159)
Q Consensus        78 ---------------------A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~  134 (159)
                                           |+..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|+.  +.++..++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~  151 (176)
T 2r5s_A           72 DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM  151 (176)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHH
Confidence                                 4555666667788889999999999999999999999999999999875  56888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Q 031461          135 ELKDKQREYAKYQAEIFGTMLSK  157 (159)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~  157 (159)
                      .+...+++..+.. ..|.+.+.+
T Consensus       152 ~~~~~~g~~~~A~-~~y~~al~~  173 (176)
T 2r5s_A          152 DILSALGQGNAIA-SKYRRQLYS  173 (176)
T ss_dssp             HHHHHHCSSCHHH-HHHHHHHHH
T ss_pred             HHHHHhCCCCcHH-HHHHHHHHH
Confidence            8888877665543 366666554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.60  E-value=3.6e-14  Score=100.32  Aligned_cols=128  Identities=12%  Similarity=0.010  Sum_probs=102.7

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh-hCHHHHHHHHHHHhh
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-EDYSETSSLCTKVLE   87 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~   87 (159)
                      .+..+...|.++...|++++|+.+|.+++.+.+.....         .....++.++|.++... |++++|+.++++++.
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~  146 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELAGE  146 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            36677888888888899999999999998887654332         12245688999999995 999999999999999


Q ss_pred             cCCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHHHHHHHH
Q 031461           88 LEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV-------VKLVYMELKDKQREYAK  145 (159)
Q Consensus        88 ~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~~~~~~~~~  145 (159)
                      +.|..      ..++..+|.++..+|++++|+..|++++.+.|++..       +...++.+...+++..+
T Consensus       147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  217 (292)
T 1qqe_A          147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA  217 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHH
Confidence            98754      567899999999999999999999999999987653       34556666665555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.60  E-value=5.7e-14  Score=96.33  Aligned_cols=123  Identities=15%  Similarity=-0.008  Sum_probs=111.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|++++|+..|.+++...|..               ..++..+|.++...|++++|+..+++++..
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  100 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS---------------ADAHAALAVVFQTEMEPKLADEEYRKALAS  100 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            37888999999999999999999999999986654               455899999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALT--IDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +|.++.+++.+|.++...|++++|+..|++++.  ..|.+..+...++.+....++..+.
T Consensus       101 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  160 (252)
T 2ho1_A          101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA  160 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999  8888889999888888777666554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.60  E-value=3.5e-14  Score=98.35  Aligned_cols=117  Identities=17%  Similarity=0.162  Sum_probs=102.3

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|..+...|++++|+..|.+++...|.++               .++.++|.++..+|++++|+.++++++.++|
T Consensus        75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  139 (272)
T 3u4t_A           75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---------------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT  139 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---------------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCC
Confidence            4467788888888889999999988888876653               4589999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      .++.+++.+|...+..+++++|+..|++++.++|++..+...++.+...++.
T Consensus       140 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            9999999999555556699999999999999999999998888888776654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.60  E-value=1.2e-14  Score=109.53  Aligned_cols=112  Identities=25%  Similarity=0.334  Sum_probs=97.6

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461            1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS   80 (159)
Q Consensus         1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   80 (159)
                      |++++....++.+...|..++..|+|++|+..|.+++...|.+               ..++.++|.++..+|++++|+.
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~   80 (537)
T 3fp2_A           16 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE---------------PVFYSNISACYISTGDLEKVIE   80 (537)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHHH
Confidence            4677888899999999999999999999999999999997765               4559999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461           81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  128 (159)
Q Consensus        81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  128 (159)
                      .+++++.++|+++.+++.+|.++...|++++|+..|+ ++.+.|+...
T Consensus        81 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~  127 (537)
T 3fp2_A           81 FTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDG  127 (537)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCh
Confidence            9999999999999999999999999999999999996 8888887654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.59  E-value=4.3e-14  Score=100.04  Aligned_cols=122  Identities=13%  Similarity=0.008  Sum_probs=100.2

Q ss_pred             HHHHHhhhHHHHcc-cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           11 ERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        11 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ..+...|..++..| ++++|+..|.+++...|..+               .++..+|.++...|++++|+..+++++.+.
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  155 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG---------------PAWIAYGHSFAVESEHDQAMAAYFTAAQLM  155 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence            44666777888888 88888888888887765543               347888999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ  147 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  147 (159)
                      |.+..+++.+|.++...|++++|+..|++++...|+++.+...++.+....++..+..
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~  213 (330)
T 3hym_B          156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE  213 (330)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHH
Confidence            9888888889999999999999999999999999998888888888887776665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.59  E-value=1.1e-13  Score=97.85  Aligned_cols=133  Identities=11%  Similarity=-0.042  Sum_probs=73.5

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------------HHHHHHHHHHHHHHhhHHHHHhh
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------------DEKHQANGLRLSCYLNNAACKLK   71 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~a~~~~~   71 (159)
                      ..+...|..++..|+|++|+..|.+++...|.++..-.                   .......+....++..+|.++..
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  102 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM  102 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            34677788888888888888888888888776543310                   00000011112234455555555


Q ss_pred             hh-CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           72 LE-DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        72 ~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      .| ++++|+.++++++.++|.++.+++.+|.++...|++++|+..|++++...|++..+...++.+....++.
T Consensus       103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B          103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred             hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence            55 5555555555555555555555555555555555555555555555555555555555555554444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.59  E-value=6.2e-14  Score=99.10  Aligned_cols=122  Identities=14%  Similarity=0.117  Sum_probs=108.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ...+...|..+...|++++|+..|.+++...|.+               ..++.++|.++...|++++|+.++++++..+
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---------------AQLWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            4567778999999999999999999999986654               3458899999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN------------NRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      |+++.+++.+|.++...|++++|+..|++++.+.|.            ++.++..++.+...+++.++.
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  305 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV  305 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999999999999999999            788888888888887776554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.59  E-value=4.4e-15  Score=97.27  Aligned_cols=125  Identities=14%  Similarity=0.088  Sum_probs=104.8

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK   94 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~   94 (159)
                      ..+..+...|++++|+..|.+++...|.+               ..++..+|.++...|++++|+.++++++.++|.++.
T Consensus        15 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   79 (177)
T 2e2e_A           15 DPLHQFASQQNPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE   79 (177)
T ss_dssp             TTTCCCC-----CCCCHHHHHHHHHCCSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH
T ss_pred             hhhhhhhhccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            34555678899999999999999997765               345899999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHhhCCH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461           95 ALYRRSQA-HLKTSEL--EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus        95 ~~~~~~~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                      +++.+|.+ +...|++  ++|+..|++++..+|+++.++..++.+....++..+... .|.+++
T Consensus        80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al  142 (177)
T 2e2e_A           80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE-LWQKVM  142 (177)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH-HHHHHH
Confidence            99999999 8899999  999999999999999999999999999888877765533 454443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.59  E-value=1.2e-13  Score=99.34  Aligned_cols=143  Identities=9%  Similarity=-0.053  Sum_probs=109.0

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChH----------------------------------HHHHHHH
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD----------------------------------EKHQANG   56 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----------------------------------~~~~~~~   56 (159)
                      ..+...|..+...|++++|+..|.+++...|..+.....                                  ......+
T Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  212 (368)
T 1fch_A          133 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP  212 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCc
Confidence            445566677777777777777777777665543322100                                  0000111


Q ss_pred             H--HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           57 L--RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        57 ~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      .  ...++.++|.++...|++++|+.++++++.++|+++.+++.+|.++...|++++|+..|++++.++|++..++..++
T Consensus       213 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  292 (368)
T 1fch_A          213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG  292 (368)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            1  35668899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 031461          135 ELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~  154 (159)
                      .+....++..+... .|.++
T Consensus       293 ~~~~~~g~~~~A~~-~~~~a  311 (368)
T 1fch_A          293 ISCINLGAHREAVE-HFLEA  311 (368)
T ss_dssp             HHHHHHTCHHHHHH-HHHHH
T ss_pred             HHHHHCCCHHHHHH-HHHHH
Confidence            99988877665533 44433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.59  E-value=1.8e-13  Score=101.02  Aligned_cols=114  Identities=22%  Similarity=0.237  Sum_probs=103.9

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..+..+...|..++..|++++|+..|.+++...|.+               ..++..+|.++..+|++++|+.++++++.
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            357788999999999999999999999999986654               45589999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKLVYMEL  136 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~  136 (159)
                      ++|+++.+++.+|.+|...|++++|+..|++++.++|++.   .++..+..+
T Consensus        89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  140 (450)
T 2y4t_A           89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS  140 (450)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998   776665443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.58  E-value=7.9e-14  Score=98.71  Aligned_cols=115  Identities=15%  Similarity=0.097  Sum_probs=66.6

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHH----HHHhhhhCHHHHHHHHHHHh
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA----ACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~A~~~~~~al   86 (159)
                      +.+...|..+...|++++|+..|.+++...|.+.                 ..+++    ..+...|++++|+..+++++
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------------~~~l~~a~~~l~~~~~~~~eA~~~~~~~l  193 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----------------LTQLATAWVSLAAGGEKLQDAYYIFQEMA  193 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----------------HHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            4566677788888888888888888887754421                 11111    11222355555555555555


Q ss_pred             hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      ..+|+++.+++.+|.++...|++++|...|++++.++|+++.++..++.+...+++
T Consensus       194 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          194 DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK  249 (291)
T ss_dssp             HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            55555555555555555555555555555555555555555555555554444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.58  E-value=1.4e-14  Score=91.91  Aligned_cols=95  Identities=8%  Similarity=0.038  Sum_probs=85.6

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ...++.+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+.+|++++.++|+++.++..++.+..
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            45588999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHH
Q 031461          139 KQREYAKYQAEIFGTM  154 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (159)
                      .+++..+... .|.++
T Consensus        98 ~~g~~~~A~~-~~~~a  112 (142)
T 2xcb_A           98 QLGDLDGAES-GFYSA  112 (142)
T ss_dssp             HTTCHHHHHH-HHHHH
T ss_pred             HcCCHHHHHH-HHHHH
Confidence            8877765533 44443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.58  E-value=9.3e-14  Score=84.84  Aligned_cols=101  Identities=8%  Similarity=0.005  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC
Q 031461           28 RASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS  107 (159)
Q Consensus        28 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  107 (159)
                      .|+..|.+++...|.+               ..++.++|.++...|++++|+.++++++.++|.++.+++.+|.++...|
T Consensus         3 ~a~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            3 AITERLEAMLAQGTDN---------------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             CHHHHHHHHHTTTCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence            5788999999987765               3458999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHH
Q 031461          108 ELEKAEADIKRALTIDPN--NRVVKLVYMELKDKQREY  143 (159)
Q Consensus       108 ~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~  143 (159)
                      ++++|+..|++++.+.|.  +......+......+++.
T Consensus        68 ~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           68 DRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhccc
Confidence            999999999999999885  345555555555555444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.58  E-value=6.5e-14  Score=96.90  Aligned_cols=139  Identities=22%  Similarity=0.186  Sum_probs=114.5

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..+..+...|..++..|++++|+.+|.+++.+.......+       .+....++.++|.++...|++++|+.++++++.
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  113 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  113 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4577888999999999999999999999999863321000       022466799999999999999999999999998


Q ss_pred             c--------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           88 L--------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI--------DPNNRVVKLVYMELKDKQREYAKYQAEIF  151 (159)
Q Consensus        88 ~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (159)
                      +        +|....++..+|.++...|++++|+..|++++.+        .|....+...++.+....++..+... .+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~  192 (283)
T 3edt_B          114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET-LY  192 (283)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-HH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HH
Confidence            8        5778999999999999999999999999999998        67677888888888888777655433 44


Q ss_pred             HHH
Q 031461          152 GTM  154 (159)
Q Consensus       152 ~~~  154 (159)
                      .++
T Consensus       193 ~~~  195 (283)
T 3edt_B          193 KEI  195 (283)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.57  E-value=2.3e-15  Score=90.98  Aligned_cols=94  Identities=23%  Similarity=0.377  Sum_probs=75.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ++.+...|..++..|+|++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++.++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---------------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            5667788888888888888888888888886654               3447888888888888888888888888888


Q ss_pred             Ccc------HHHHHHHHHHHHhhCCHHHHHHHHHH
Q 031461           90 PLN------VKALYRRSQAHLKTSELEKAEADIKR  118 (159)
Q Consensus        90 ~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~  118 (159)
                      |++      ..+++.+|.++...|+++.|+..+++
T Consensus        69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           69 STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            887      88888888888888887777655543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.57  E-value=8.6e-14  Score=98.35  Aligned_cols=131  Identities=11%  Similarity=0.008  Sum_probs=106.4

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      -..+..+...|+.+...|+|++|+..|.+++.+.+.....         .....++.++|.++..+|++++|+.++++++
T Consensus        34 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al  104 (292)
T 1qqe_A           34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE---------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAI  104 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3455667777888999999999999999999997643221         1235679999999999999999999999999


Q ss_pred             hcCCcc------HHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHHHH
Q 031461           87 ELEPLN------VKALYRRSQAHLKT-SELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        87 ~~~~~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~  146 (159)
                      .+.|..      +.++.++|.+|... |++++|+.+|++++.+.|.+      ..+...++.+...+++..+.
T Consensus       105 ~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A          105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            987643      56899999999996 99999999999999998754      34566777777777666554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.57  E-value=9.1e-14  Score=86.11  Aligned_cols=95  Identities=17%  Similarity=0.152  Sum_probs=85.6

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ...+.++|..+...|+|++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.++..++.+..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45588999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHH
Q 031461          139 KQREYAKYQAEIFGTM  154 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (159)
                      .+++..+... .|.++
T Consensus        84 ~~~~~~~A~~-~~~~a   98 (126)
T 3upv_A           84 AVKEYASALE-TLDAA   98 (126)
T ss_dssp             HTTCHHHHHH-HHHHH
T ss_pred             HHhCHHHHHH-HHHHH
Confidence            8877765533 44443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.55  E-value=2.5e-13  Score=84.03  Aligned_cols=93  Identities=16%  Similarity=0.134  Sum_probs=85.5

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      ++.+|..+...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.++..++.+....+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHh
Q 031461          142 EYAKYQAEIFGTML  155 (159)
Q Consensus       142 ~~~~~~~~~~~~~~  155 (159)
                      +..+... .+.++.
T Consensus       100 ~~~~A~~-~~~~al  112 (121)
T 1hxi_A          100 NANAALA-SLRAWL  112 (121)
T ss_dssp             HHHHHHH-HHHHHH
T ss_pred             CHHHHHH-HHHHHH
Confidence            8866543 555543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.55  E-value=5.8e-14  Score=97.18  Aligned_cols=127  Identities=9%  Similarity=-0.075  Sum_probs=107.6

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHH
Q 031461           16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA   95 (159)
Q Consensus        16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~   95 (159)
                      .+......|++++|+..|.+++...+.++           +....++..+|.++...|++++|+.++++++.++|.++.+
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~   79 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRALTD-----------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV   79 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSCCCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred             eeeccCccchHHHHHHHHHHHHhcccccC-----------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHH
Confidence            34445567999999999999998743221           1235678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           96 LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus        96 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      ++.+|.++...|++++|+..|++++.++|+++.++..++.+....++..+... .|.++
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a  137 (275)
T 1xnf_A           80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD-DLLAF  137 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHH-HHHHH
Confidence            99999999999999999999999999999999999999999988777655433 44444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.55  E-value=3e-13  Score=83.43  Aligned_cols=102  Identities=27%  Similarity=0.387  Sum_probs=92.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ...+...|..++..|++++|+..|.+++...|.+               ..++.++|.++...|++++|+..+++++...
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~   99 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   99 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            3456678999999999999999999999986653               3458899999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      |.++.+++.+|.++...|++++|...+.+++..+|++
T Consensus       100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999998863

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.54  E-value=2.8e-14  Score=89.12  Aligned_cols=88  Identities=13%  Similarity=0.150  Sum_probs=75.3

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH-------HHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV-------VKL  131 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~  131 (159)
                      ..++.++|..+++.|+|++|+.+|+++|.++|+++.++.++|.+|..+|++++|+.+|++++.++|++..       ++.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            4558899999999999999999999999999999999999999999999999999999999999887643       455


Q ss_pred             HHHHHHHHHHHHHHH
Q 031461          132 VYMELKDKQREYAKY  146 (159)
Q Consensus       132 ~~~~~~~~~~~~~~~  146 (159)
                      .++.+...+++..+.
T Consensus        88 ~lg~~~~~~~~~~~A  102 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLA  102 (127)
T ss_dssp             HHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCCHHHH
Confidence            555555555555443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.53  E-value=3.7e-13  Score=100.64  Aligned_cols=120  Identities=14%  Similarity=0.154  Sum_probs=102.4

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh---hhCHHHHHHHHHHHhh
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK---LEDYSETSSLCTKVLE   87 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~   87 (159)
                      ..+...|..++..|++++|+..|.+++...|.++....         ...++.++|.++..   .|++++|+.++++++.
T Consensus       373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~  443 (514)
T 2gw1_A          373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV---------GIAPLVGKATLLTRNPTVENFIEATNLLEKASK  443 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS---------CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH---------HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence            44667788888889999999999998888776654210         01258999999999   9999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      ++|+++.+++.+|.++...|++++|+..|++++.++|+++.+...+.-....
T Consensus       444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  495 (514)
T 2gw1_A          444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAA  495 (514)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888777655543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.53  E-value=2.2e-13  Score=102.55  Aligned_cols=138  Identities=14%  Similarity=0.119  Sum_probs=99.2

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC-------------ChHH------HHHHHHHHHHHHhhHHHH
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-------------TDDE------KHQANGLRLSCYLNNAAC   68 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------~~~~------~~~~~~~~~~~~~~~a~~   68 (159)
                      ..+..+...|..++..|++++|+..|.+++...|. +..             ....      .....+-...++..+|.+
T Consensus       241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  319 (537)
T 3fp2_A          241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM  319 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            34667888888888888888888888888887654 100             0000      011112224467788888


Q ss_pred             HhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           69 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        69 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +...|++++|+..+++++.++|.++.+++.+|.++...|++++|+..|++++...|+++.++..++.+....++..+.
T Consensus       320 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  397 (537)
T 3fp2_A          320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA  397 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888777777766665444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.53  E-value=5.5e-13  Score=99.18  Aligned_cols=126  Identities=17%  Similarity=0.053  Sum_probs=100.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+..+|.+++..|++++|+.+|.+++++.+.......      ++-...+|.|+|.+|..+|++++|+.++++++.+.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~------~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA------EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC------TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            455778999999999999999999999998653211000      01125568999999999999999999999998763


Q ss_pred             --------CccHHHHHHHHHHHHhh--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           90 --------PLNVKALYRRSQAHLKT--SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        90 --------~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                              +..+..+..+|.++...  ++|++|+.+|++++.++|+++.+...++.+...+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~  186 (472)
T 4g1t_A          125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD  186 (472)
T ss_dssp             HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence                    34578888888877665  47999999999999999999998888887765543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.52  E-value=7.5e-13  Score=96.44  Aligned_cols=132  Identities=19%  Similarity=0.154  Sum_probs=107.0

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ...+..+...|..++..|+++.|+.+|.+++.+.+..+...        .....++.++|.++..+|++++|+.++++++
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  211 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN--------IRLLQCHSLFATNFLDLKQYEDAISHFQKAY  211 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch--------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34677888999999999999999999999999877654321        2345678899999999999999999999999


Q ss_pred             hcCCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHh-----cC-CCcHHHHHHHHHHHHHHHHHHHH
Q 031461           87 ELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALT-----ID-PNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        87 ~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      .+.+..      ..++.++|.+|...|++++|+.+|++++.     .+ |....+...++.+...+++..+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  283 (383)
T 3ulq_A          212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA  283 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence            875433      45889999999999999999999999998     45 77777888888887776665544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.52  E-value=6.5e-13  Score=84.48  Aligned_cols=132  Identities=14%  Similarity=0.053  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      ....+..+...|..++..|++++|+.+|.+++.+.+..+..         .....++.++|.++..+|++++|+.+++++
T Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   75 (164)
T 3ro3_A            5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERIAYSNLGNAYIFLGEFETASEYYKKT   75 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34568889999999999999999999999999997754332         233567899999999999999999999999


Q ss_pred             hhcCCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHHHHHH
Q 031461           86 LELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPN------NRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        86 l~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +.+.+..      ..+++.+|.++...|++++|+..+++++.+.+.      ...+...++.+....++..+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  148 (164)
T 3ro3_A           76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  148 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence            9876542      678999999999999999999999999877432      134566667777666665544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.51  E-value=4.5e-13  Score=86.74  Aligned_cols=95  Identities=19%  Similarity=0.188  Sum_probs=86.7

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ...+..+|.++...|+|++|+.+|++++.++|.++.+++.+|.+|...|++++|+.+|++++.++|++..++..++.+..
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            55689999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHH
Q 031461          139 KQREYAKYQAEIFGTM  154 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (159)
                      .+++..+... .|.++
T Consensus        91 ~~g~~~~A~~-~~~~a  105 (164)
T 3sz7_A           91 DMADYKGAKE-AYEKG  105 (164)
T ss_dssp             HTTCHHHHHH-HHHHH
T ss_pred             HccCHHHHHH-HHHHH
Confidence            8887766543 44444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.51  E-value=6.2e-13  Score=94.11  Aligned_cols=97  Identities=10%  Similarity=0.069  Sum_probs=87.7

Q ss_pred             HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461           21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS  100 (159)
Q Consensus        21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (159)
                      ...|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+..+++++.++|+++.+++++|
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~  241 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPT---------------LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV  241 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34589999999999999997764               456999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCHHH-HHHHHHHHHhcCCCcHHHHHH
Q 031461          101 QAHLKTSELEK-AEADIKRALTIDPNNRVVKLV  132 (159)
Q Consensus       101 ~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~  132 (159)
                      .++...|++++ +..++++++.++|+++.+...
T Consensus       242 ~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            99999999987 568899999999999987653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.51  E-value=1.9e-12  Score=91.41  Aligned_cols=136  Identities=11%  Similarity=-0.012  Sum_probs=107.5

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh------------------------HHHH----------HHHH
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD------------------------DEKH----------QANG   56 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------------------~~~~----------~~~~   56 (159)
                      ..+...|..+...|++++|+..|.+++...|.......                        ....          ...+
T Consensus        90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  169 (327)
T 3cv0_A           90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP  169 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence            45666777888888888888888888877655332110                        0000          0111


Q ss_pred             HHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           57 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        57 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      ....++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++|+..|++++...|++..++..++.+
T Consensus       170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS  249 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            12456889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q 031461          137 KDKQREYAKY  146 (159)
Q Consensus       137 ~~~~~~~~~~  146 (159)
                      ....++..+.
T Consensus       250 ~~~~g~~~~A  259 (327)
T 3cv0_A          250 YSNMSQYDLA  259 (327)
T ss_dssp             HHHTTCHHHH
T ss_pred             HHHhccHHHH
Confidence            8877766554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.51  E-value=5.8e-13  Score=80.20  Aligned_cols=83  Identities=12%  Similarity=0.093  Sum_probs=75.0

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLV  132 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~  132 (159)
                      ...+.++|.++...|+|++|+..+++++.++|.++.+++++|.++..+|++++|+..|++++.++|++      ..+...
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999998      666666


Q ss_pred             HHHHHHHHH
Q 031461          133 YMELKDKQR  141 (159)
Q Consensus       133 ~~~~~~~~~  141 (159)
                      ++.+...++
T Consensus        84 ~~~~~~~~~   92 (111)
T 2l6j_A           84 LELAQGAVG   92 (111)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.50  E-value=1.3e-12  Score=99.63  Aligned_cols=129  Identities=9%  Similarity=-0.028  Sum_probs=110.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+...|..+...|++++|+..|.+++...|.+               ..++..+|.++...|++++|+..+++++...
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF---------------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4456778889999999999999999999876654               3458899999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      |.++.++..+|.++...|++++|+..|++++...|.++.++..+..+....++.++... .|.++
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~  501 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN-HFQNA  501 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH-HHHHH
Confidence            99999999999999999999999999999999999999999888888877766655433 44444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.49  E-value=3.2e-13  Score=103.35  Aligned_cols=116  Identities=14%  Similarity=0.101  Sum_probs=87.0

Q ss_pred             cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461           23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  102 (159)
Q Consensus        23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  102 (159)
                      .|++++|+..|.+++...|.+               ..++.++|.++...|++++|+..+++++.++|+++.+++.+|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   66 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQD---------------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV   66 (568)
T ss_dssp             -------------------CC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            478999999999999987765               45599999999999999999999999999999999999999999


Q ss_pred             HHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461          103 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       103 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      +...|++++|+..|++++.++|++..++..++.+....++..+... .|.+.
T Consensus        67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~a  117 (568)
T 2vsy_A           67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA-AYTRA  117 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            9999999999999999999999999999999999988877765533 44443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.49  E-value=7.9e-13  Score=76.87  Aligned_cols=81  Identities=31%  Similarity=0.393  Sum_probs=76.0

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ..++.++|.++...|++++|+.++++++.++|.++.+++.+|.++...|++++|+..|++++.++|+++.+...++.+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999888887765


Q ss_pred             H
Q 031461          139 K  139 (159)
Q Consensus       139 ~  139 (159)
                      .
T Consensus        89 ~   89 (91)
T 1na3_A           89 K   89 (91)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.49  E-value=7e-13  Score=91.66  Aligned_cols=109  Identities=20%  Similarity=0.074  Sum_probs=93.3

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ...+..+...|..+...|++++|+.+|.+++.........+       .+....++.++|.++..+|++++|+.++++++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34577888999999999999999999999999853321110       02236679999999999999999999999999


Q ss_pred             hc--------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           87 EL--------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        87 ~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      .+        .|....++..+|.++...|++++|+..+++++.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            98        7888999999999999999999999999999976

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.49  E-value=5.6e-13  Score=85.89  Aligned_cols=95  Identities=15%  Similarity=0.133  Sum_probs=84.8

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc-------cHH-----HHHHHHHHHHhhCCHHHHHHHHHHHHhc----
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-------NVK-----ALYRRSQAHLKTSELEKAEADIKRALTI----  122 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-------~~~-----~~~~~~~~~~~~~~~~~A~~~~~~al~~----  122 (159)
                      ...+.++|..++..|+|++|+..|+++|+++|+       +..     +|.++|.++..+|+|++|+.+|.+++.+    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            445789999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 031461          123 ---DPNNRVVK----LVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       123 ---~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                         +|++..++    ...+.+...+++.++... .|.+.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~-~y~kA  128 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKV  128 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH-HHHHH
Confidence               99999999    999999999888877644 55554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.48  E-value=1.6e-12  Score=94.63  Aligned_cols=132  Identities=13%  Similarity=0.029  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ...+..+...|..++..|+++.|+.+|.+++.+.+..+...        .....++.++|.++..+|++++|+.++++++
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  209 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS--------IRTIQSLFVIAGNYDDFKHYDKALPHLEAAL  209 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch--------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            45677888889999999999999999999999877644321        2245668888999999999999999998888


Q ss_pred             hcCC------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           87 ELEP------LNVKALYRRSQAHLKTSELEKAEADIKRALT-----IDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        87 ~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      .+.+      ....++.++|.+|...|++++|+..|++++.     .+|....+...++.+...+++..+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  280 (378)
T 3q15_A          210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA  280 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHH
Confidence            7632      2356788889999999999999999998888     6777777888888888777666554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.47  E-value=3.8e-12  Score=96.07  Aligned_cols=141  Identities=16%  Similarity=0.141  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      .+..+....+.+..+..+|+|++|+..|.+++.+....-..+       .+....++.++|.+|..+|+|++|+.+++++
T Consensus       305 ~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  377 (490)
T 3n71_A          305 MIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYARRM  377 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            344566677788888899999999999999999865422111       1234677999999999999999999999999


Q ss_pred             hhcC--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-----CCCcHHHH---HHHHHHHHHHHHHHHHHHH
Q 031461           86 LELE--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTI-----DPNNRVVK---LVYMELKDKQREYAKYQAE  149 (159)
Q Consensus        86 l~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~---~~~~~~~~~~~~~~~~~~~  149 (159)
                      +.+.        |+....+.++|.+|..+|++++|...|++|+.+     -|+++.+.   ..+..++..++++++.+. 
T Consensus       378 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~-  456 (490)
T 3n71_A          378 VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF-  456 (490)
T ss_dssp             HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            9662        455778999999999999999999999999866     56776554   455556666666655543 


Q ss_pred             HHHHH
Q 031461          150 IFGTM  154 (159)
Q Consensus       150 ~~~~~  154 (159)
                      .|.++
T Consensus       457 ~~~~~  461 (490)
T 3n71_A          457 MYHKM  461 (490)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.47  E-value=1e-12  Score=92.68  Aligned_cols=124  Identities=14%  Similarity=0.008  Sum_probs=101.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-   88 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-   88 (159)
                      +..+...|..+...+++++|+.+|.+++.+.+.....         .....++.++|.+|..+|++++|+.++++++.. 
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  185 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL  185 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4455568888888899999999999999975544332         123456899999999999999999999999942 


Q ss_pred             ------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHH
Q 031461           89 ------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQRE  142 (159)
Q Consensus        89 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~  142 (159)
                            .+..+.+++++|.+|..+|+|++|+..+++++.+.+..      ..+...++.+...+++
T Consensus       186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~  251 (293)
T 3u3w_A          186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence                  23446789999999999999999999999999886543      6788888888888774

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.47  E-value=1.6e-12  Score=81.22  Aligned_cols=95  Identities=18%  Similarity=0.166  Sum_probs=85.6

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ...+..+|.++...|+|++|+.++++++.++|.++.+++.+|.++...|++++|+..|++++.++|+++.++..++.+..
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHH
Q 031461          139 KQREYAKYQAEIFGTM  154 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (159)
                      .+++..+... .|.++
T Consensus        89 ~~~~~~~A~~-~~~~a  103 (137)
T 3q49_B           89 EMESYDEAIA-NLQRA  103 (137)
T ss_dssp             HTTCHHHHHH-HHHHH
T ss_pred             HHhhHHHHHH-HHHHH
Confidence            8877655432 44443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.47  E-value=9.1e-13  Score=93.69  Aligned_cols=108  Identities=13%  Similarity=0.102  Sum_probs=85.3

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|.++.. |++++|+.+|.+++.+.+.....         .....++.++|.++..+|+|++|+.++++++.+
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL---------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35566777777777 88888888888888876643221         223567889999999999999999999999988


Q ss_pred             CCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461           89 EPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        89 ~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      .|.+      ..+++.+|.++..+|++++|+..|++++ ++|...
T Consensus       185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            6543      3478889999999999999999999999 988754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.46  E-value=2.2e-12  Score=93.99  Aligned_cols=109  Identities=17%  Similarity=0.183  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ...+..+...|..+...|+|++|+.+|.+++.+.+..+..         .....++.++|.++..+|++++|+.++++++
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP---------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3456778899999999999999999999999997765332         3446679999999999999999999999999


Q ss_pred             h-----cC-CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461           87 E-----LE-PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP  124 (159)
Q Consensus        87 ~-----~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  124 (159)
                      .     .+ |..+.+++.+|.++..+|++++|+..+++++.+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9     46 88899999999999999999999999999998853

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.46  E-value=5.4e-12  Score=96.31  Aligned_cols=145  Identities=10%  Similarity=0.022  Sum_probs=110.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------HHHH------HHHHHHHHHHhhHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------DEKH------QANGLRLSCYLNNAACKL   70 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------~~~~------~~~~~~~~~~~~~a~~~~   70 (159)
                      +..+...|..++..|++++|+..|.+++...|.+...-.             +...      ...+....++..+|.++.
T Consensus       305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  384 (597)
T 2xpi_A          305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL  384 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence            455677889999999999999999999988765433210             0000      011112456778888999


Q ss_pred             hhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEI  150 (159)
Q Consensus        71 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (159)
                      ..|++++|+..+++++.++|.+..++..+|.+|...|++++|+..|++++...|++..++..+..+....+..++... .
T Consensus       385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~  463 (597)
T 2xpi_A          385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE-Y  463 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH-H
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH-H
Confidence            999999999999999999998888999999999999999999999999999999888888888888877777655533 5


Q ss_pred             HHHHh
Q 031461          151 FGTML  155 (159)
Q Consensus       151 ~~~~~  155 (159)
                      |.++.
T Consensus       464 ~~~~~  468 (597)
T 2xpi_A          464 LQSSY  468 (597)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.46  E-value=4e-12  Score=92.55  Aligned_cols=109  Identities=17%  Similarity=-0.020  Sum_probs=96.5

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..+..+...|..+...|+|++|+.+|.+++.+.+..+..         .....++.++|.++..+|++++|+.++++++.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND---------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            457778899999999999999999999999987643321         23466799999999999999999999999999


Q ss_pred             -----cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461           88 -----LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN  125 (159)
Q Consensus        88 -----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  125 (159)
                           .+|..+.+++.+|.++...|++++|+..+++++.+.+.
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence                 78888999999999999999999999999999998543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.46  E-value=1.9e-12  Score=94.63  Aligned_cols=125  Identities=14%  Similarity=0.076  Sum_probs=108.3

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ...+..+...|..++..|++++|+.+|.+++...|.++           .....++..+|.++..+|++++|+.++++++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            35677788999999999999999999999999966543           2234678999999999999999999999999


Q ss_pred             hc------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHH
Q 031461           87 EL------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        87 ~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~  142 (159)
                      .+      .|....++..+|.++...|++++|+..|++++.+      .|....+...++.+....++
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            88      5778899999999999999999999999999988      45556677788888877777

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=3.5e-12  Score=89.43  Aligned_cols=140  Identities=21%  Similarity=0.173  Sum_probs=112.9

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ...+..+...|..++..|++++|+.+|.+++.........+       .+....++.++|.++..+|++++|+.++++++
T Consensus        66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  138 (311)
T 3nf1_A           66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL  138 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            34567788899999999999999999999999864320000       02236678999999999999999999999999


Q ss_pred             hcC--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           87 ELE--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTI--------DPNNRVVKLVYMELKDKQREYAKYQAEI  150 (159)
Q Consensus        87 ~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (159)
                      .+.        |....++..+|.++...|++++|+..|++++.+        .|....+...++.+....++..+... .
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~  217 (311)
T 3nf1_A          139 EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET-L  217 (311)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-H
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-H
Confidence            874        667889999999999999999999999999988        66667788888888887777665533 4


Q ss_pred             HHHH
Q 031461          151 FGTM  154 (159)
Q Consensus       151 ~~~~  154 (159)
                      +.++
T Consensus       218 ~~~a  221 (311)
T 3nf1_A          218 YKEI  221 (311)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=2.4e-12  Score=90.28  Aligned_cols=140  Identities=19%  Similarity=0.121  Sum_probs=112.4

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..+..+...|..++..|++++|+.+|.+++.+........       .+....++.++|.++...|++++|+.++++++.
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-------HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567788899999999999999999999999863220000       022356789999999999999999999999999


Q ss_pred             c--------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-------------------------------------
Q 031461           88 L--------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI-------------------------------------  122 (159)
Q Consensus        88 ~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------------------------------------  122 (159)
                      +        .|....++..+|.++...|++++|+..|++++..                                     
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG  261 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence            8        7778899999999999999999999999999974                                     


Q ss_pred             ------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461          123 ------------DPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus       123 ------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                                  .|.+..++..++.+....++..+... .|.+.+
T Consensus       262 ~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al  305 (311)
T 3nf1_A          262 EYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET-LEEAAM  305 (311)
T ss_dssp             CCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHH
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence                        35566777888888887777765533 454443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.45  E-value=2e-12  Score=91.25  Aligned_cols=107  Identities=18%  Similarity=0.129  Sum_probs=91.3

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|.+++..|+|++|+.+|.+++......+..        ......++.++|.++..+|+|++|+.++++++.+
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            35568899999999999999999999999876544222        2345668999999999999999999999999988


Q ss_pred             CCcc------HHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcC
Q 031461           89 EPLN------VKALYRRSQAHLKTS-ELEKAEADIKRALTID  123 (159)
Q Consensus        89 ~~~~------~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~  123 (159)
                      .+..      +.+++.+|.++..+| ++++|+..|++++.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            6443      889999999999999 5799999999998763

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.44  E-value=8.4e-13  Score=93.88  Aligned_cols=108  Identities=12%  Similarity=0.066  Sum_probs=85.3

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|.++...|+|++|+.+|.+++.+.+.....         .....++.++|.++.. |++++|+.++++++.+
T Consensus        75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~  144 (307)
T 2ifu_A           75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP---------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV  144 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH---------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence            35566777777777788888888888888775543221         1235668899999988 9999999999999988


Q ss_pred             CCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           89 EPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        89 ~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      .|..      ..++.++|.+|..+|++++|+..|++++.+.|.+
T Consensus       145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            7643      6788999999999999999999999999886644

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.44  E-value=2.2e-13  Score=80.80  Aligned_cols=67  Identities=18%  Similarity=0.276  Sum_probs=33.4

Q ss_pred             hHHHHHhhhhCHHHHHHHHHHHhhcCCccHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHH
Q 031461           64 NNAACKLKLEDYSETSSLCTKVLELEPLNVK-ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  130 (159)
Q Consensus        64 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  130 (159)
                      ++|.++...|++++|+..+++++..+|.++. +++.+|.++...|++++|+..|++++.++|++..++
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            3444444555555555555555555555444 555555555555555555555555555555444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.44  E-value=3.9e-12  Score=73.87  Aligned_cols=84  Identities=27%  Similarity=0.333  Sum_probs=76.5

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++.+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            46778889999999999999999999999987654               345889999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhC
Q 031461           89 EPLNVKALYRRSQAHLKTS  107 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~  107 (159)
                      +|.++.++..+|.++...|
T Consensus        73 ~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999998765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.43  E-value=5.8e-12  Score=88.83  Aligned_cols=127  Identities=14%  Similarity=-0.025  Sum_probs=97.2

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh---h
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL---E   87 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~   87 (159)
                      ..+...|..+...|++++|+.+|.+++...+.....         .....++.++|.+|..+|++++|+.++++++   .
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~  186 (293)
T 2qfc_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE  186 (293)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            334556777777788888888888888765543222         1124578999999999999999999999999   4


Q ss_pred             cCCcc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHHHHHH
Q 031461           88 LEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPN------NRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        88 ~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      ..|++    +.+++++|.+|..+|+|++|+..+++++.+.+.      ...+...++.+...+++.++.
T Consensus       187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            45543    368999999999999999999999999987542      156777788887776655444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.43  E-value=4e-12  Score=91.65  Aligned_cols=99  Identities=12%  Similarity=0.041  Sum_probs=89.6

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+..+|..++..|+|++|+..|.+++.+.|.+               ..+++++|.++..+|++++|+.++++++.+
T Consensus       195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  259 (336)
T 1p5q_A          195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---------------EKGLSRRGEAHLAVNDFELARADFQKVLQL  259 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999997765               456999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHH-HHHHHHHHhc
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKA-EADIKRALTI  122 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~  122 (159)
                      +|++..++..+|.++...|++++| ...|.+++..
T Consensus       260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 5566666543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.42  E-value=5.4e-12  Score=91.59  Aligned_cols=129  Identities=15%  Similarity=0.043  Sum_probs=106.2

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|++++|+.+|.+++.+.+..+..         .....++.++|.++..+|++++|+.++++++.+
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  256 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  256 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            45678889999999999999999999999997765432         233557899999999999999999999999988


Q ss_pred             CCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHHHH
Q 031461           89 EPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        89 ~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~  146 (159)
                      .|..      ..++..+|.++...|++++|+..|++++.+.+..      ..+...++.+....++..+.
T Consensus       257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            7655      7789999999999999999999999999885543      55666777777766665444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.42  E-value=1.9e-12  Score=77.64  Aligned_cols=95  Identities=14%  Similarity=0.118  Sum_probs=84.8

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELK  137 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~  137 (159)
                      .++..+|.++...|++++|+.++++++.++|.++.+++.+|.++...|++++|+..|++++...|.  +..++..++.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            348899999999999999999999999999999999999999999999999999999999999999  999999999998


Q ss_pred             HHH-HHHHHHHHHHHHHHh
Q 031461          138 DKQ-REYAKYQAEIFGTML  155 (159)
Q Consensus       138 ~~~-~~~~~~~~~~~~~~~  155 (159)
                      ..+ ++..+... .+.++.
T Consensus        87 ~~~~~~~~~A~~-~~~~~~  104 (112)
T 2kck_A           87 RYIEGKEVEAEI-AEARAK  104 (112)
T ss_dssp             TTCSSCSHHHHH-HHHHHG
T ss_pred             HHHhCCHHHHHH-HHHHHh
Confidence            887 76655433 454443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.41  E-value=2.9e-12  Score=82.72  Aligned_cols=95  Identities=14%  Similarity=0.122  Sum_probs=85.1

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhc------------------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLEL------------------EPLNVKALYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      ...+.++|..++..|+|++|+..|++++.+                  +|.++.+++++|.+|..+|++++|+.++.+++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445889999999999999999999999999                  77888999999999999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461          121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       121 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      .++|+++.++..++.+...+++..+... .|.+.
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~-~~~~a  123 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEE-DLKLL  123 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHH-HHHHH
Confidence            9999999999999999988888766543 44443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.41  E-value=5.2e-12  Score=89.72  Aligned_cols=119  Identities=11%  Similarity=0.006  Sum_probs=73.0

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|..+...|++++|+..|.+++...|.++.              .++.++|.++...|++++|...|++++..+|
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  165 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDAR  165 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            34556677777888888888888888887554321              1356666666666666666666666666666


Q ss_pred             ccHHHHHHHHHHHH-hhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHL-KTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        91 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      .+...++..+.... ..|++++|...|++++...|+++.++..+..+....++.
T Consensus       166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~  219 (308)
T 2ond_A          166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED  219 (308)
T ss_dssp             CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence            55555554444432 246666666666666666666666655555555444333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.41  E-value=4.4e-12  Score=89.39  Aligned_cols=122  Identities=15%  Similarity=0.103  Sum_probs=102.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-   88 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-   88 (159)
                      +..+...|..++..|++++|+..|.+++...|.++           .....++..+|.++...|++++|+.++++++.+ 
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   73 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   73 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            55677899999999999999999999999866543           223567899999999999999999999999887 


Q ss_pred             -----CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHH
Q 031461           89 -----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQRE  142 (159)
Q Consensus        89 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~  142 (159)
                           .|..+.++..+|.++...|++++|+..+.+++.+.|..      ..+...++.+....++
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence                 45568899999999999999999999999999886543      2366667777766666

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.41  E-value=8.1e-12  Score=82.76  Aligned_cols=129  Identities=9%  Similarity=0.085  Sum_probs=102.0

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|++++|+.+|.+++.+.......         +....++.++|.++..+|++++|+.++++++.+
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH---------TAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46778889999999999999999999999986643321         334667999999999999999999999999988


Q ss_pred             ---CC----ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC--CcH----HHHHHHHHHHHHHHHHHHH
Q 031461           89 ---EP----LNVKALYRRSQAHLKTSELEKAEADIKRALTIDP--NNR----VVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        89 ---~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~~~~~~~~~~~~~~~~~~  146 (159)
                         .+    ....++..+|.++...|++++|+..+++++.+.+  .++    .+...++.+....++..+.
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  166 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA  166 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence               33    3467799999999999999999999999987643  222    2345666666655555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.40  E-value=4.1e-12  Score=75.83  Aligned_cols=68  Identities=15%  Similarity=0.150  Sum_probs=64.5

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      ..++.++|.++..+|++++|+.++++++.++|+++.+++.+|.+|...|++++|+..|++++.+.|.+
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            45689999999999999999999999999999999999999999999999999999999999997754

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.40  E-value=1.4e-11  Score=74.39  Aligned_cols=95  Identities=13%  Similarity=0.119  Sum_probs=84.7

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ...+..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..+++++...|+++.+...++.+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHH
Q 031461          139 KQREYAKYQAEIFGTM  154 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (159)
                      ..++..+... .+.+.
T Consensus        84 ~~~~~~~A~~-~~~~~   98 (118)
T 1elw_A           84 FLNRFEEAKR-TYEEG   98 (118)
T ss_dssp             HTTCHHHHHH-HHHHH
T ss_pred             HHhhHHHHHH-HHHHH
Confidence            8777655433 44443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.39  E-value=4.7e-12  Score=91.93  Aligned_cols=122  Identities=15%  Similarity=0.103  Sum_probs=103.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-   88 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-   88 (159)
                      +..+...|..++..|++++|+.+|.+++...|.++           .....++..+|.++...|++++|+.++++++.+ 
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   77 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   77 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999966543           223567899999999999999999999999887 


Q ss_pred             -----CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHH
Q 031461           89 -----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQRE  142 (159)
Q Consensus        89 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~  142 (159)
                           .|..+.++..+|.++...|++++|+..+.+++.+.|..      ..+...++.+....++
T Consensus        78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence                 45568899999999999999999999999999887643      3467777777777666

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.39  E-value=8.9e-12  Score=79.91  Aligned_cols=98  Identities=15%  Similarity=0.159  Sum_probs=85.7

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ...+...|..++..|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+.++++++.++
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  111 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAALRDYETVVKVK  111 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            4567788999999999999999999999997654               3458999999999999999999999999999


Q ss_pred             CccHHHHHH--HHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           90 PLNVKALYR--RSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        90 ~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      |.+..++..  ++..+...|++++|+..+.++..+
T Consensus       112 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          112 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            999888854  555588999999999999887544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.39  E-value=8.9e-12  Score=76.95  Aligned_cols=93  Identities=24%  Similarity=0.196  Sum_probs=82.8

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH---HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNV---KALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYME  135 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~  135 (159)
                      ++.+|.++...|+|++|+..+++++..+|+++   .+++.+|.++...|++++|+..|++++...|++   +.+...++.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            78899999999999999999999999999988   899999999999999999999999999999999   888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 031461          136 LKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~  155 (159)
                      +...+++..+... .|.++.
T Consensus        85 ~~~~~g~~~~A~~-~~~~~~  103 (129)
T 2xev_A           85 SQYGEGKNTEAQQ-TLQQVA  103 (129)
T ss_dssp             HHHHTTCHHHHHH-HHHHHH
T ss_pred             HHHHcCCHHHHHH-HHHHHH
Confidence            9888777655533 454443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.38  E-value=8.7e-12  Score=73.79  Aligned_cols=63  Identities=13%  Similarity=0.090  Sum_probs=54.0

Q ss_pred             HHHH-HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461           57 LRLS-CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        57 ~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      -... ++.++|.++..+|++++|+.++++++.++|+++.++.+        +.+.+++..|+++...+|+++
T Consensus        32 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           32 VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            3445 78999999999999999999999999999999988754        677888888888888877654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.38  E-value=1.2e-11  Score=78.47  Aligned_cols=108  Identities=16%  Similarity=0.115  Sum_probs=91.4

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|++++|+.+|.+++.+.+.....         .....++.++|.++...|++++|+.++++++.+
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34578889999999999999999999999987654322         234567899999999999999999999999977


Q ss_pred             CC------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461           89 EP------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN  125 (159)
Q Consensus        89 ~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  125 (159)
                      .+      ....++..+|.++...|++++|+..+++++.+...
T Consensus       119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            42      23678899999999999999999999999877543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.38  E-value=1.5e-11  Score=86.68  Aligned_cols=136  Identities=14%  Similarity=0.028  Sum_probs=109.9

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|++++|+.+|.+++...+..+..         .....++.++|.++...|++++|+.++++++.+
T Consensus       182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  252 (338)
T 3ro2_A          182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45678888999999999999999999999987764332         233557899999999999999999999999988


Q ss_pred             CCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           89 EPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus        89 ~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      .+..      ..++..+|.++...|++++|+..+++++.+.|..      ..+...++.+....++..+... .+.+.
T Consensus       253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a  329 (338)
T 3ro2_A          253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH-FAEKH  329 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHH
T ss_pred             HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH-HHHHH
Confidence            7654      7889999999999999999999999999886543      3466677777777776655433 44444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.37  E-value=5.9e-13  Score=99.01  Aligned_cols=110  Identities=11%  Similarity=-0.027  Sum_probs=68.0

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHH-HhhhhCHHHHHHHHHHHhhcC--
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC-KLKLEDYSETSSLCTKVLELE--   89 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~al~~~--   89 (159)
                      +...|..+...|++++|+.+|.+++...+.+..            ...++.++|.. ...+|++++|+.+|++++.++  
T Consensus       337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~  404 (472)
T 4g1t_A          337 CSILASLHALADQYEEAEYYFQKEFSKELTPVA------------KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK  404 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH------------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred             hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence            456799999999999999999999987554321            12335556544 457899999999999988764  


Q ss_pred             ----------------------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           90 ----------------------PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        90 ----------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                                            |.++.++..+|.+|...|++++|+.+|++|+.+.|.+|.+..+++
T Consensus       405 ~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence                                  666789999999999999999999999999999999998887765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.36  E-value=1.5e-11  Score=75.93  Aligned_cols=95  Identities=15%  Similarity=0.166  Sum_probs=85.4

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ...+..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..+++++.++|++..++..++.+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            56689999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHH
Q 031461          139 KQREYAKYQAEIFGTM  154 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (159)
                      ..++..+... .|.+.
T Consensus        96 ~~~~~~~A~~-~~~~~  110 (133)
T 2lni_A           96 AMKDYTKAMD-VYQKA  110 (133)
T ss_dssp             HTTCHHHHHH-HHHHH
T ss_pred             HHhhHHHHHH-HHHHH
Confidence            8777655433 44443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.36  E-value=1.1e-11  Score=90.50  Aligned_cols=129  Identities=12%  Similarity=0.049  Sum_probs=105.0

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|++++|+.+|.+++.+.+.....         .....++.++|.++..+|++++|+.++++++.+
T Consensus       222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR---------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            45577889999999999999999999999998764331         223456889999999999999999999999988


Q ss_pred             CCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHHHH
Q 031461           89 EPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        89 ~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~  146 (159)
                      .+..      ..++..+|.++...|++++|+..|++++.+.+..      ..+...++.+...+++..+.
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  362 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA  362 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence            7643      7889999999999999999999999999885533      34666677777666665444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.36  E-value=7e-13  Score=99.32  Aligned_cols=95  Identities=17%  Similarity=0.122  Sum_probs=85.6

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---------------VKALYRRSQAHLKTSELEKAEADIKRALTID  123 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  123 (159)
                      ...+.++|.+++..|+|++|+.+|++++.++|.+               ..+++++|.||..+|+|++|+.+|.+++.++
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            5568999999999999999999999999999988               6999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461          124 PNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       124 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      |++..++..++.+...+++..+... .|.++
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~-~~~~a  377 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKG-DFEKV  377 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHH-HHHHH
Confidence            9999999999999988877766533 44444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.35  E-value=3.5e-11  Score=85.40  Aligned_cols=96  Identities=14%  Similarity=0.175  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHH-HhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH-HHHHHHHHH
Q 031461           26 YWRASKKYEKAAK-IIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK-ALYRRSQAH  103 (159)
Q Consensus        26 ~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~  103 (159)
                      +++|+..|.+++. +.|.+               ..++.++|.++...|++++|...|++++.+.|.++. +|..+|.++
T Consensus        80 ~~~A~~~~~rAl~~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  144 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA  144 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHH
Confidence            4999999999999 66654               456899999999999999999999999999999987 999999999


Q ss_pred             HhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461          104 LKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus       104 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      ...|++++|...|++++...|.+..++.....+
T Consensus       145 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  177 (308)
T 2ond_A          145 RRAEGIKSGRMIFKKAREDARTRHHVYVTAALM  177 (308)
T ss_dssp             HHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            999999999999999999999887766544443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.35  E-value=5e-11  Score=73.07  Aligned_cols=96  Identities=19%  Similarity=0.184  Sum_probs=85.3

Q ss_pred             HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           58 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      ....+..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..+.+++...|+++.++..++.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            45668999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 031461          138 DKQREYAKYQAEIFGTM  154 (159)
Q Consensus       138 ~~~~~~~~~~~~~~~~~  154 (159)
                      ...++..+... .|.++
T Consensus        91 ~~~~~~~~A~~-~~~~~  106 (131)
T 2vyi_A           91 SSLNKHVEAVA-YYKKA  106 (131)
T ss_dssp             HHTTCHHHHHH-HHHHH
T ss_pred             HHhCCHHHHHH-HHHHH
Confidence            87776655433 44433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.34  E-value=1.1e-10  Score=81.04  Aligned_cols=109  Identities=13%  Similarity=0.057  Sum_probs=68.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh----hhCHHHHHHHHHHH
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKV   85 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a   85 (159)
                      +..+...|..++..|++++|+.+|.+++..  .+               ..++.++|.++..    .+++++|+.+++++
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a   68 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KE---------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   68 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TC---------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC---------------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH
Confidence            455677777788888888888888877762  11               2335566666666    66666666666666


Q ss_pred             hhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           86 LELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      +..+  ++.+++.+|.+|..    .+++++|+.+|++++...  ++.+...++.+...
T Consensus        69 ~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  122 (273)
T 1ouv_A           69 CDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD  122 (273)
T ss_dssp             HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence            6654  55666666666666    666666666666666552  45555555555544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.33  E-value=1.6e-10  Score=81.36  Aligned_cols=130  Identities=18%  Similarity=0.059  Sum_probs=101.7

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      .....+...+..++..|+|++|+..|.+++...+..+.         .......+..+|.++...|++++|+.++++++.
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  143 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE---------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN  143 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH---------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh---------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            34566778899999999999999999999987543211         012234466799999999999999999999998


Q ss_pred             cCCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHH---hcCCCcH----HHHHHHHHHHHHHHHHHHH
Q 031461           88 LEPLN------VKALYRRSQAHLKTSELEKAEADIKRAL---TIDPNNR----VVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        88 ~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~~~~~~~~~~~~~~~  146 (159)
                      +.+..      ..++..+|.+|...|++++|+..|++++   ...|++.    .+...++.+...+++.++.
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A  215 (293)
T 2qfc_A          144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES  215 (293)
T ss_dssp             TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHH
Confidence            65433      6689999999999999999999999999   5566653    4667777777666666554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.33  E-value=5.4e-12  Score=84.01  Aligned_cols=95  Identities=12%  Similarity=-0.053  Sum_probs=84.8

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH----------------HHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV----------------KALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      ...+..+|.++...|+|++|+..+++++.+.|.++                .+++++|.++...|++++|+.++.+++.+
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            45588999999999999999999999999999887                89999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461          123 DPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       123 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      +|++..+...++.+...+++..+... .|.+.
T Consensus       118 ~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~a  148 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFGFLEEAKE-NLYKA  148 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHH-HHHHH
T ss_pred             CcccHHHHHHHHHHHHHcccHHHHHH-HHHHH
Confidence            99999999999999988877765533 44443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.32  E-value=9.8e-11  Score=87.15  Aligned_cols=120  Identities=9%  Similarity=0.028  Sum_probs=94.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-   88 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-   88 (159)
                      +....+.+......|+|++|+..|.+++.+....-..+       .+....++.++|.+|..+|+|++|+.++++++.+ 
T Consensus       298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~  370 (433)
T 3qww_A          298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY  370 (433)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            33445555556667899999999999999865321111       1334677999999999999999999999999966 


Q ss_pred             -------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHH
Q 031461           89 -------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI-----DPNNRVVKLVYMEL  136 (159)
Q Consensus        89 -------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~  136 (159)
                             .|+....+.++|.+|..+|++++|...|++|+.+     -|+++.+......+
T Consensus       371 ~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          371 SKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence                   2455778999999999999999999999999876     68888877665554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=6.2e-11  Score=74.51  Aligned_cols=95  Identities=17%  Similarity=0.154  Sum_probs=84.9

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  135 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  135 (159)
                      ...+..+|.++...|+|++|+..+++++.++|++   ..+++.+|.++...|++++|+..|++++.++|++..++..++.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            4568899999999999999999999999999988   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 031461          136 LKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~  154 (159)
                      +...+++..+... .|.++
T Consensus       108 ~~~~~~~~~~A~~-~~~~a  125 (148)
T 2dba_A          108 ALEKLGRLDQAVL-DLQRC  125 (148)
T ss_dssp             HHHHHTCHHHHHH-HHHHH
T ss_pred             HHHHcCCHHHHHH-HHHHH
Confidence            9888877655533 44444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.31  E-value=4e-11  Score=84.29  Aligned_cols=94  Identities=18%  Similarity=0.171  Sum_probs=85.0

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ...+..+|..+...|+|++|+..+++++..+|+++.+++++|.++...|++++|+..+++++.++|++..++..++.+..
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHH
Q 031461          139 KQREYAKYQAEIFGT  153 (159)
Q Consensus       139 ~~~~~~~~~~~~~~~  153 (159)
                      .+++..+... .|.+
T Consensus        84 ~~g~~~~A~~-~~~~   97 (281)
T 2c2l_A           84 EMESYDEAIA-NLQR   97 (281)
T ss_dssp             HTTCHHHHHH-HHHH
T ss_pred             HcCCHHHHHH-HHHH
Confidence            8877765543 4443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.30  E-value=7.3e-11  Score=75.25  Aligned_cols=103  Identities=16%  Similarity=0.177  Sum_probs=85.9

Q ss_pred             cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh---CHHHHHHHHHHHhhcC-C-ccHHHHHHH
Q 031461           25 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTKVLELE-P-LNVKALYRR   99 (159)
Q Consensus        25 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-~-~~~~~~~~~   99 (159)
                      ....+...|...+...+.+               ..+.+++|.++.+.+   ++.+++..++.+++.+ | ...+++|++
T Consensus        13 ~l~~~~~~y~~e~~~~~~~---------------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~L   77 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVS---------------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL   77 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCC---------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHH
Confidence            3445566677666543321               455889999999988   7779999999999999 7 679999999


Q ss_pred             HHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461          100 SQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus       100 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      |..++++|+|++|..+++.+++.+|+|..+......+...+.+
T Consensus        78 Av~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           78 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988888776644

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.30  E-value=4e-12  Score=95.73  Aligned_cols=102  Identities=17%  Similarity=0.184  Sum_probs=88.0

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+...|..++..|+|++|+..|.+++.+.|.+               ..++.++|.++..+|++++|+.+++++++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            5667889999999999999999999999997654               4558999999999999999999999999999


Q ss_pred             CccHHHHHHHHHH--HHhhCCHHHHHHHHH-----------HHHhcCCCc
Q 031461           90 PLNVKALYRRSQA--HLKTSELEKAEADIK-----------RALTIDPNN  126 (159)
Q Consensus        90 ~~~~~~~~~~~~~--~~~~~~~~~A~~~~~-----------~al~~~p~~  126 (159)
                      |++..++..++.+  +...|++++|+..++           +++.+.|+.
T Consensus       105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999998  899999999999999           888877754

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.30  E-value=1.1e-10  Score=70.98  Aligned_cols=88  Identities=28%  Similarity=0.350  Sum_probs=80.8

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..|++++...|.++.+...++.+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999988888887


Q ss_pred             HHHHHHHH
Q 031461          139 KQREYAKY  146 (159)
Q Consensus       139 ~~~~~~~~  146 (159)
                      ..++..+.
T Consensus        89 ~~~~~~~A   96 (125)
T 1na0_A           89 KQGDYDEA   96 (125)
T ss_dssp             HTTCHHHH
T ss_pred             HhcCHHHH
Confidence            77665544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.30  E-value=4.2e-12  Score=91.62  Aligned_cols=103  Identities=10%  Similarity=0.002  Sum_probs=57.2

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+..+|..++..|+|++|+..|.+++.+.|.+               ..+++++|.++..+|++++|+.++++++.++|
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p  295 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---------------PKALFRRGKAKAELGQMDSARDDFRKAQKYAP  295 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            367889999999999999999999999997765               45699999999999999999999999999999


Q ss_pred             ccHHHHHHHHHH-HHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461           91 LNVKALYRRSQA-HLKTSELEKAEADIKRALTIDPNNRV  128 (159)
Q Consensus        91 ~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~  128 (159)
                      +++.++..++.+ ....+..+.+...|.+++...|+++.
T Consensus       296 ~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          296 DDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ---------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            999999999998 45567788899999999999998764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.29  E-value=4.6e-11  Score=73.35  Aligned_cols=95  Identities=13%  Similarity=0.116  Sum_probs=82.2

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-------HHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-------RVVKL  131 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~  131 (159)
                      ...+..+|.++...|++++|+.++++++..+|.++.+++.+|.++...|++++|+..|.+++...|.+       ..+..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999998877       77888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 031461          132 VYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      .++.+....++..+... .|.++
T Consensus        84 ~la~~~~~~~~~~~A~~-~~~~~  105 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIH-FYNKS  105 (131)
T ss_dssp             HHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHhccHHHHHH-HHHHH
Confidence            88888877766655432 44443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.27  E-value=1.2e-10  Score=81.82  Aligned_cols=109  Identities=12%  Similarity=-0.008  Sum_probs=86.3

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--   89 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--   89 (159)
                      ..+..|..+++.++|++|+.+|..++.....             .+...+++++|.++..+|++++|+.++++++...  
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~-------------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~  203 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK-------------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG  203 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc-------------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence            5677788888888888888888765543100             0113468899999999999999999999998544  


Q ss_pred             Cc-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           90 PL-NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        90 ~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      |. .+.+++++|.++..+|+.++|...|++++..+|+ +.+...+.
T Consensus       204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            55 6779999999999999999999999999999998 77666554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.26  E-value=1.5e-11  Score=75.21  Aligned_cols=83  Identities=13%  Similarity=0.117  Sum_probs=70.7

Q ss_pred             hhhCHHHHHHHHHHHhhc---CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 031461           71 KLEDYSETSSLCTKVLEL---EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ  147 (159)
Q Consensus        71 ~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  147 (159)
                      .+|++++|+.++++++.+   +|+++.+++.+|.++...|++++|+..|++++.++|+++.+...++.+...+++..+..
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   69999999999999999999999999999999999999999999999998888876654


Q ss_pred             HHHHHHH
Q 031461          148 AEIFGTM  154 (159)
Q Consensus       148 ~~~~~~~  154 (159)
                      . .+.+.
T Consensus        82 ~-~~~~a   87 (117)
T 3k9i_A           82 E-LLLKI   87 (117)
T ss_dssp             H-HHHHH
T ss_pred             H-HHHHH
Confidence            3 44443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.25  E-value=6.7e-10  Score=82.63  Aligned_cols=123  Identities=11%  Similarity=0.054  Sum_probs=96.5

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .++........+..+|+|++|+..|++++......-..+       .+....++.++|.+|..+|+|++|+.++++++.+
T Consensus       286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i  358 (429)
T 3qwp_A          286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP  358 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            344555556677889999999999999998754321111       1334677999999999999999999999999965


Q ss_pred             C--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHH
Q 031461           89 E--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTI-----DPNNRVVKLVYMELKD  138 (159)
Q Consensus        89 ~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~  138 (159)
                      .        |+....+.++|.+|..+|++++|...|++|+.+     -|+++.+...+..+..
T Consensus       359 ~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~  421 (429)
T 3qwp_A          359 YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE  421 (429)
T ss_dssp             HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred             HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            2        445778999999999999999999999999866     6888877766555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.24  E-value=8.2e-10  Score=84.84  Aligned_cols=115  Identities=11%  Similarity=0.013  Sum_probs=104.8

Q ss_pred             HHHHHhhhHHHHccc----------HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh--CHHHH
Q 031461           11 ERKKHDGNLLFRAGK----------YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE--DYSET   78 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A   78 (159)
                      .....+|......++          +++|+.++.+++...|.+               ..+|..++.+...++  +++++
T Consensus        64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---------------y~aW~hR~w~l~~l~~~~~~~e  128 (567)
T 1dce_A           64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---------------YGTWHHRCWLLSRLPEPNWARE  128 (567)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcccccHHHH
Confidence            446667777777777          999999999999997765               456999999999999  77999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           79 SSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        79 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      +.+++++++++|.+..+|..++.++...| .++++++++.+++..+|.|.+++.....+...+
T Consensus       129 l~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          129 LELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            99999999999999999999999999999 999999999999999999999999999998775

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.23  E-value=2.4e-10  Score=68.72  Aligned_cols=83  Identities=18%  Similarity=0.139  Sum_probs=64.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ++.++..|..++..++|..|+..|..|+...+......        .....++.++|.|+.++|+++.|+..+++++.++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            45688999999999999999999999999865432111        0124567788888888888888888888888888


Q ss_pred             CccHHHHHHHH
Q 031461           90 PLNVKALYRRS  100 (159)
Q Consensus        90 ~~~~~~~~~~~  100 (159)
                      |+++.+..+++
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            88877776665

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.23  E-value=3.6e-10  Score=76.20  Aligned_cols=129  Identities=12%  Similarity=-0.028  Sum_probs=89.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc-----------cCCC--ChHH-----HHHHHHHHHHHHhhHHHHHhh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF-----------HHSF--TDDE-----KHQANGLRLSCYLNNAACKLK   71 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----------~~~~--~~~~-----~~~~~~~~~~~~~~~a~~~~~   71 (159)
                      +..+...|..++..+++++|+.+|.++++....           ....  +.+.     ..-...-...++.++|.+|..
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            456777888888888888888888888764211           0000  1000     000122224467788888877


Q ss_pred             ----hhCHHHHHHHHHHHhhcCC--ccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           72 ----LEDYSETSSLCTKVLELEP--LNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        72 ----~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                          .+++++|+.++++++...|  .++.+++.+|.+|..    .+++++|+.+|+++..+ |.++.+...++.+...
T Consensus        98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A           98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence                7788888888888888887  458888888888888    78888888888888887 6666677777776643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.22  E-value=1.1e-09  Score=76.07  Aligned_cols=107  Identities=13%  Similarity=0.060  Sum_probs=68.9

Q ss_pred             HHHHHhhhHHHH----cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh----hhCHHHHHHHH
Q 031461           11 ERKKHDGNLLFR----AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLC   82 (159)
Q Consensus        11 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~   82 (159)
                      ..+...|..+..    .+++++|+.+|.++++..  +               ..++.++|.++..    .+++++|+.++
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~  101 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y---------------SNGCHLLGNLYYSGQGVSQNTNKALQYY  101 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHhCCCCcccCHHHHHHHH
Confidence            446667777777    788888888888877763  1               2346666666666    66666666666


Q ss_pred             HHHhhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           83 TKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        83 ~~al~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ++++..+  ++.+++.+|.+|..    .+++++|+.+|++++...  ++.+...++.+..
T Consensus       102 ~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~  157 (273)
T 1ouv_A          102 SKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD  157 (273)
T ss_dssp             HHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence            6666653  56666666666666    666666666666666654  3444444444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.22  E-value=3.5e-11  Score=78.72  Aligned_cols=111  Identities=12%  Similarity=-0.008  Sum_probs=89.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChH--------------HH------HHHHHHHHHHHhhHHHHH
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD--------------EK------HQANGLRLSCYLNNAACK   69 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------------~~------~~~~~~~~~~~~~~a~~~   69 (159)
                      +..+...|..+...|++++|+..|.+++...| ++.....              ..      ....+-...++.++|.++
T Consensus        40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~  118 (176)
T 2r5s_A           40 GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQY  118 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            56688889999999999999999999888765 3211000              00      011122356789999999


Q ss_pred             hhhhCHHHHHHHHHHHhhcCCcc--HHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461           70 LKLEDYSETSSLCTKVLELEPLN--VKALYRRSQAHLKTSELEKAEADIKRALT  121 (159)
Q Consensus        70 ~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~  121 (159)
                      ...|++++|+..++++++.+|++  +.++..+|.++...|++++|+..|++++.
T Consensus       119 ~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          119 NQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999999999999999999976  66999999999999999999999999874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.22  E-value=2.8e-10  Score=76.77  Aligned_cols=78  Identities=12%  Similarity=0.089  Sum_probs=59.8

Q ss_pred             HHHHhhHHHHHhhhh----CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCC--cHH
Q 031461           59 LSCYLNNAACKLKLE----DYSETSSLCTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPN--NRV  128 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~--~~~  128 (159)
                      ..+++++|.+|.. +    ++++|+.++++++.  +.++.+++.+|.+|..    .+++++|+.+|+++....|.  ++.
T Consensus        50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  126 (212)
T 3rjv_A           50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD  126 (212)
T ss_dssp             HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH
Confidence            4557788888877 6    78888888888854  4678888888888877    78888888888888888773  477


Q ss_pred             HHHHHHHHHHH
Q 031461          129 VKLVYMELKDK  139 (159)
Q Consensus       129 ~~~~~~~~~~~  139 (159)
                      +...++.+...
T Consensus       127 a~~~Lg~~y~~  137 (212)
T 3rjv_A          127 AQMLLGLIYAS  137 (212)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            77777777654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.21  E-value=3.6e-10  Score=74.68  Aligned_cols=109  Identities=14%  Similarity=0.020  Sum_probs=90.3

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..+..+...|..+...|++++|+.+|.+++.+....+...        .....++.++|.++..+|++++|+.++++++.
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP--------LAASANAYEVATVALHFGDLAGARQEYEKSLV  135 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH--------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4567788899999999999999999999999966443220        12456789999999999999999999999997


Q ss_pred             cCCc------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461           88 LEPL------NVKALYRRSQAHLKTSELEKAEADIKRALTIDP  124 (159)
Q Consensus        88 ~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  124 (159)
                      +.+.      ...++..+|.++...|++++|...+++++.+..
T Consensus       136 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            6421      145578999999999999999999999987743

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.19  E-value=7e-10  Score=66.64  Aligned_cols=79  Identities=19%  Similarity=0.107  Sum_probs=70.2

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcC-------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELE-------PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      .+.+|..++..++|..|+.+++.|++..       +..+..+..+|.+++.+|+++.|+..+++++.++|+++.+...+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            7899999999999999999999999863       356888999999999999999999999999999999998877776


Q ss_pred             HHHHHH
Q 031461          135 ELKDKQ  140 (159)
Q Consensus       135 ~~~~~~  140 (159)
                      .+...+
T Consensus        88 ~~~~~~   93 (104)
T 2v5f_A           88 YFEYIM   93 (104)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.18  E-value=1.4e-09  Score=78.65  Aligned_cols=128  Identities=12%  Similarity=0.106  Sum_probs=92.5

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+...|..++..|+++.|+..+.+++.+.+..+..         .....++.++|.++...|++++|+..+++++.+
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34456677777888888888888888888876654321         122445778899999999999999999999876


Q ss_pred             C--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHHHH
Q 031461           89 E--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-----RVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        89 ~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~  145 (159)
                      .        |....++..+|.++...|++++|...+.+++.+.|..     ..+...++.+....++..+
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  192 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN  192 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            4        3456677889999999999999999999998887642     2345555555555444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.18  E-value=9.3e-10  Score=84.56  Aligned_cols=116  Identities=9%  Similarity=-0.059  Sum_probs=100.5

Q ss_pred             HHHHHhhhHHHHcccH-HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhC----------HHHHH
Q 031461           11 ERKKHDGNLLFRAGKY-WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED----------YSETS   79 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~   79 (159)
                      .............|.+ ++|+..+.+++...|.+               ..+|+.++.+...+++          +++++
T Consensus        29 ~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~---------------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL   93 (567)
T 1dce_A           29 QSATQAVFQKRQAGELDESVLELTSQILGANPDF---------------ATLWNCRREVLQHLETEKSPEESAALVKAEL   93 (567)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHhcccccchhhhhhhHHHHH
Confidence            3333344444555544 67899999999997765               5669999999999998          99999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHhhC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           80 SLCTKVLELEPLNVKALYRRSQAHLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        80 ~~~~~al~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      .++++++..+|.+..+|+.++-++...+  ++++++.++.+++.++|.|..++...+-+...++
T Consensus        94 ~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~  157 (567)
T 1dce_A           94 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA  157 (567)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence            9999999999999999999999999999  7799999999999999999999999998887776

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.17  E-value=6.3e-10  Score=65.57  Aligned_cols=78  Identities=21%  Similarity=0.142  Sum_probs=66.0

Q ss_pred             HHHHhhHHHHHhhhhC---HHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLED---YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  135 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  135 (159)
                      ..++..+|.+++..++   .++|...+++++.++|+++.+++.+|..++..|+|++|+..|++++..+|.++........
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~~   85 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIES   85 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence            3457788888865555   7999999999999999999999999999999999999999999999999986544333333


Q ss_pred             H
Q 031461          136 L  136 (159)
Q Consensus       136 ~  136 (159)
                      |
T Consensus        86 I   86 (93)
T 3bee_A           86 I   86 (93)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.16  E-value=3.2e-10  Score=82.83  Aligned_cols=95  Identities=22%  Similarity=0.206  Sum_probs=84.7

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhh----------------cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLE----------------LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      ...+.++|..+...|+|++|+..|++++.                ++|.++.+++++|.++..+|++++|+.++++++.+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            44588999999999999999999999998                78888999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461          123 DPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       123 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      +|++..++..++.+...+++..+... .|.++
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~-~l~~A  333 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALA-DLKKA  333 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHH-HHHHH
Confidence            99999999999999988877766533 44443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.15  E-value=1.5e-10  Score=68.92  Aligned_cols=84  Identities=13%  Similarity=0.034  Sum_probs=69.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+...|..++..|+|++|+..|.+++.+.|.++               .++.++|.++..+|++++|+..+++++.+.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV---------------GTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            56788999999999999999999999999987754               359999999999999999999999999987


Q ss_pred             Ccc--HHHHHHHHHHHHhhCC
Q 031461           90 PLN--VKALYRRSQAHLKTSE  108 (159)
Q Consensus        90 ~~~--~~~~~~~~~~~~~~~~  108 (159)
                      |..  ..+...+...+...+.
T Consensus        72 ~~~~~~~~~~~l~~~l~~~~~   92 (100)
T 3ma5_A           72 REEGTQKDLSELQDAKLKAEG   92 (100)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHT
T ss_pred             hcCCchhHHHHHHHHHHHccc
Confidence            654  4444555555554443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.15  E-value=5.2e-10  Score=71.94  Aligned_cols=72  Identities=17%  Similarity=0.188  Sum_probs=67.4

Q ss_pred             hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL----------EKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      .+.+.|++|+..++++++++|+++.+++++|.++..++++          ++|+..|++++.++|++..++..++.+...
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4577899999999999999999999999999999999886          499999999999999999999999999987


Q ss_pred             HH
Q 031461          140 QR  141 (159)
Q Consensus       140 ~~  141 (159)
                      ++
T Consensus        93 lg   94 (158)
T 1zu2_A           93 FA   94 (158)
T ss_dssp             HH
T ss_pred             hc
Confidence            75

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.14  E-value=1e-09  Score=83.28  Aligned_cols=115  Identities=10%  Similarity=0.001  Sum_probs=66.3

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|..+...|+++.|...|.+++...|.++.              .+|.+.|.+....|++++|...|+++++..|
T Consensus       322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~  387 (530)
T 2ooe_A          322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDAR  387 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            44556677778889999999999999987554321              2355555555555555555555555555555


Q ss_pred             ccHHHHHHHHHH-HHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQA-HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        91 ~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      .....+...+.+ +...|++++|...|++++...|+++.++..+..+...
T Consensus       388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~  437 (530)
T 2ooe_A          388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  437 (530)
T ss_dssp             CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence            444444444433 2335555555555555555555555555555444433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.13  E-value=2.1e-09  Score=76.61  Aligned_cols=116  Identities=12%  Similarity=-0.090  Sum_probs=92.4

Q ss_pred             HHHHHhhhHHHHcc--cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHH----hhh---hCHHHHHHH
Q 031461           11 ERKKHDGNLLFRAG--KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK----LKL---EDYSETSSL   81 (159)
Q Consensus        11 ~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~---~~~~~A~~~   81 (159)
                      .....+|.+....+  .+++++.++..++...|.+.               .++..++.+.    ..+   +++++++.+
T Consensus        68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y---------------~aW~~R~~iL~~~~~~l~~~~~~~~EL~~  132 (306)
T 3dra_A           68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY---------------QIWNYRQLIIGQIMELNNNDFDPYREFDI  132 (306)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC---------------HHHHHHHHHHHHHHHHTTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH---------------HHHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence            34566788888888  99999999999999877653               3477777776    555   678888888


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHhhCCHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           82 CTKVLELEPLNVKALYRRSQAHLKTSELE--KAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      +++++..+|.+..+|..++-++...|.++  +++.++.+++..+|.|.+++.....+...++
T Consensus       133 ~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~  194 (306)
T 3dra_A          133 LEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK  194 (306)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            88888888888888888888888888888  8888888888888888888887777765554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.13  E-value=1.8e-09  Score=76.93  Aligned_cols=104  Identities=11%  Similarity=0.019  Sum_probs=95.8

Q ss_pred             ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHH--HHHHHHHHHhhcCCccHHHHHHHHH
Q 031461           24 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS--ETSSLCTKVLELEPLNVKALYRRSQ  101 (159)
Q Consensus        24 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~~  101 (159)
                      +++++++.++.+++..+|.+               ..++..++.+...+|.++  +++.+++++|..+|.+..+|..++.
T Consensus       124 ~~~~~EL~~~~~~l~~~pkn---------------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~  188 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKN---------------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFF  188 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            78999999999999998776               455999999999999998  9999999999999999999999999


Q ss_pred             HHHhhCC------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461          102 AHLKTSE------LEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus       102 ~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      ++...+.      +++++.++.+++..+|+|.+++..+.-+....++
T Consensus       189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence            9999998      9999999999999999999999999988776554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.12  E-value=8e-09  Score=74.66  Aligned_cols=110  Identities=13%  Similarity=0.000  Sum_probs=98.8

Q ss_pred             HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHHhhcCCccHHHHHH
Q 031461           20 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEPLNVKALYR   98 (159)
Q Consensus        20 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~   98 (159)
                      ....+..++|+.++.++|.++|.+               ..+++.++.+...++ .+++++.+++.++..+|.+..+|..
T Consensus        64 ~~~~e~se~AL~lt~~~L~~nP~~---------------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h  128 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMNPAH---------------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH  128 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHhCchh---------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            334456678999999999997775               566999999999999 5999999999999999999999999


Q ss_pred             HHHHHHhh-C-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461           99 RSQAHLKT-S-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  144 (159)
Q Consensus        99 ~~~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  144 (159)
                      ++.++... + ++++++..+.+++..+|.|..++....-+...++...
T Consensus       129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            99999998 8 9999999999999999999999999999888877655

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.10  E-value=4.2e-09  Score=75.67  Aligned_cols=109  Identities=10%  Similarity=-0.059  Sum_probs=84.8

Q ss_pred             HHHHcccHH-HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhC----------HHHHHHHHHHHhh
Q 031461           19 LLFRAGKYW-RASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED----------YSETSSLCTKVLE   87 (159)
Q Consensus        19 ~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~   87 (159)
                      ...+.|.++ +|+.++.+++.++|.+               ..+++.++.+...++.          +++++.+++.++.
T Consensus        38 ~~~~~~e~s~eaL~~t~~~L~~nP~~---------------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~  102 (331)
T 3dss_A           38 QKRQAGELDESVLELTSQILGANPDF---------------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR  102 (331)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence            334567665 8999999999997765               4557777777766665          6788888888888


Q ss_pred             cCCccHHHHHHHHHHHHhhC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      .+|.+..+|..++-++..++  .+++++.++.+++..+|.|..++....-+...++.
T Consensus       103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~  159 (331)
T 3dss_A          103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV  159 (331)
T ss_dssp             HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc
Confidence            88888888888888888888  47888888888888888888888877777665543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.10  E-value=1.5e-09  Score=76.19  Aligned_cols=129  Identities=13%  Similarity=0.000  Sum_probs=104.3

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC-
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-   89 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-   89 (159)
                      +.....+..+...|+|++|...|..++...|.+               . +.+.+|.++...++|++|+..++.++... 
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~---------------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d  166 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEH---------------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD  166 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH---------------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch---------------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence            445667888999999999999998877654432               2 58899999999999999999999887764 


Q ss_pred             Ccc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461           90 PLN-VKALYRRSQAHLKTSELEKAEADIKRALTID--PN-NRVVKLVYMELKDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (159)
                      |.. ..+++.+|.++..+|++++|+.+|++++.-.  |. ...+...++.+...+++.++... .|.++..
T Consensus       167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~-~l~~a~a  236 (282)
T 4f3v_A          167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA-LLEWLQT  236 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Confidence            322 4589999999999999999999999998544  65 66788999999999988766643 6666543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.09  E-value=2.5e-08  Score=71.66  Aligned_cols=100  Identities=12%  Similarity=0.024  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh--CHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 031461           26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE--DYSETSSLCTKVLELEPLNVKALYRRSQAH  103 (159)
Q Consensus        26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  103 (159)
                      +++++.++..++...|.+               ..+|..++.+...++  .+++++.++++++..+|.|..+|..++.+.
T Consensus        90 l~~EL~~~~~~L~~~PKn---------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl  154 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKS---------------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  154 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            789999999999987766               455999999999998  499999999999999999999999999999


Q ss_pred             HhhCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461          104 LKTSE-LEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus       104 ~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      ...|. +++++.++.+++..+|.|.+++.....+...+
T Consensus       155 ~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          155 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            99999 69999999999999999999999999988777

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.08  E-value=1.3e-09  Score=76.83  Aligned_cols=112  Identities=10%  Similarity=-0.098  Sum_probs=89.1

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC--------------CChH-----HHHHHHHHHHHHHhhHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS--------------FTDD-----EKHQANGLRLSCYLNNAACKL   70 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~-----~~~~~~~~~~~~~~~~a~~~~   70 (159)
                      ...+...|..+...|++++|+..|.+++...|....              ....     .-....+-...+++++|.++.
T Consensus       151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~  230 (287)
T 3qou_A          151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH  230 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            567888899999999999999999888776553110              0000     001112223567899999999


Q ss_pred             hhhCHHHHHHHHHHHhhcCCcc--HHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461           71 KLEDYSETSSLCTKVLELEPLN--VKALYRRSQAHLKTSELEKAEADIKRALT  121 (159)
Q Consensus        71 ~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~  121 (159)
                      ..|++++|+..+.++++.+|++  ..++..+|.++...|+.++|...|++++.
T Consensus       231 ~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          231 QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            9999999999999999999998  89999999999999999999999999874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.05  E-value=6.2e-09  Score=75.22  Aligned_cols=130  Identities=10%  Similarity=-0.004  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ...++.....|..++..|+++.|+..+.+++...+....          .....++.++|.++...|++++|...+++++
T Consensus        11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   80 (373)
T 1hz4_A           11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----------YSRIVATSVLGEVLHCKGELTRSLALMQQTE   80 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch----------hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345677888999999999999999999999998653211          1234568899999999999999999999999


Q ss_pred             hcCCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHHHHHHHH
Q 031461           87 ELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTID--------PNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        87 ~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      .+.|..      ..++..+|.++...|++++|+..+++++.+.        |....+...++.+....++..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  154 (373)
T 1hz4_A           81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA  154 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence            876543      3457889999999999999999999999875        22344556666666666555444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.03  E-value=2.3e-09  Score=64.96  Aligned_cols=71  Identities=14%  Similarity=0.097  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           76 SETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        76 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      .+|+..+++++..+|+++.+++.+|.++...|++++|+..|++++.++|++..++..++.+....++..+.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A   72 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA   72 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999998887766554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.02  E-value=8.9e-09  Score=78.09  Aligned_cols=109  Identities=14%  Similarity=0.171  Sum_probs=91.2

Q ss_pred             HHHHHhhhHHHH-------cccHH-------HHHHHHHHHHH-HhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCH
Q 031461           11 ERKKHDGNLLFR-------AGKYW-------RASKKYEKAAK-IIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY   75 (159)
Q Consensus        11 ~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   75 (159)
                      +.+...|..+..       .|+++       +|+..|.+++. ..|.+               ..++..+|.++...|++
T Consensus       273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---------------~~l~~~~~~~~~~~g~~  337 (530)
T 2ooe_A          273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMKY  337 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCCH
Confidence            345556666664       68876       99999999997 66654               45689999999999999


Q ss_pred             HHHHHHHHHHhhcCCccH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           76 SETSSLCTKVLELEPLNV-KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        76 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      ++|...|++++.+.|.++ .+|...|.++...|++++|...|.+++...|.+..+.....
T Consensus       338 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a  397 (530)
T 2ooe_A          338 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  397 (530)
T ss_dssp             HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred             HHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence            999999999999999885 69999999999999999999999999999888765554433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=99.00  E-value=2.9e-08  Score=61.18  Aligned_cols=84  Identities=15%  Similarity=0.162  Sum_probs=74.6

Q ss_pred             HHHHhhHHHHHhhhhCHHH---HHHHHHHHhhcC-C-ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSE---TSSLCTKVLELE-P-LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  133 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  133 (159)
                      ..+.+++|.+..+.+....   ++..++..++.+ | ..-.++|.+|..++++|+|++|..++..++..+|+|..+....
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4557899999999887766   999999999987 5 5789999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHH
Q 031461          134 MELKDKQRE  142 (159)
Q Consensus       134 ~~~~~~~~~  142 (159)
                      ..+..++.+
T Consensus       115 ~~i~~~i~k  123 (126)
T 1nzn_A          115 RLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888876654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.97  E-value=1.8e-08  Score=72.86  Aligned_cols=116  Identities=11%  Similarity=-0.100  Sum_probs=103.6

Q ss_pred             HHHHHhhhHHHHcc-cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh-h-CHHHHHHHHHHHhh
Q 031461           11 ERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-E-DYSETSSLCTKVLE   87 (159)
Q Consensus        11 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~   87 (159)
                      .....+|.+....+ .+++++.++..++...|.+               ..++..++.+...+ + ++++++.++++++.
T Consensus        89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn---------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~  153 (349)
T 3q7a_A           89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS---------------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLL  153 (349)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC---------------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            34566777887888 5999999999999997765               45699999999888 7 89999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHH--------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELE--------KAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      .+|.+..+|..++-++...|.++        +++.++.+++..+|.|.+++.....+...+.
T Consensus       154 ~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          154 PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred             hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999988        9999999999999999999999998876654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.94  E-value=1.4e-08  Score=76.23  Aligned_cols=78  Identities=17%  Similarity=0.031  Sum_probs=67.4

Q ss_pred             HHHHhhHHHHHhh----hhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCC---cH
Q 031461           59 LSCYLNNAACKLK----LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPN---NR  127 (159)
Q Consensus        59 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~---~~  127 (159)
                      ..+++++|.++..    .+++++|+.++++++...  ++.+++++|.+|..    .+++++|+.+|++++...|+   ++
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  440 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTE  440 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCH
Confidence            4568899999998    899999999999999864  68899999999998    89999999999999999954   77


Q ss_pred             HHHHHHHHHHH
Q 031461          128 VVKLVYMELKD  138 (159)
Q Consensus       128 ~~~~~~~~~~~  138 (159)
                      .+...++.+..
T Consensus       441 ~a~~~l~~~~~  451 (490)
T 2xm6_A          441 NRNITEKKLTA  451 (490)
T ss_dssp             HHHHHHTTSCH
T ss_pred             HHHHHHHhcCH
Confidence            77777776654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.93  E-value=8.2e-09  Score=77.96  Aligned_cols=114  Identities=11%  Similarity=-0.009  Sum_probs=91.2

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      +..+..+..+|.++..+|+|++|+.+|.+++.+....-..+       .+.....+.|+|.+|..+|+|++|+..+++|+
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44677889999999999999999999999999864321111       12346779999999999999999999999998


Q ss_pred             hc-----CCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461           87 EL-----EPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        87 ~~-----~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      .+     .|++   ....-.+++++..++.+++|...|+++..-.-+|.
T Consensus       421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~  469 (490)
T 3n71_A          421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQ  469 (490)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            65     3444   55667899999999999999999999876543443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.93  E-value=2.7e-08  Score=62.65  Aligned_cols=89  Identities=8%  Similarity=-0.067  Sum_probs=66.6

Q ss_pred             hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh----hhCHHHHHHHHHHHhhcCCc
Q 031461           16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~   91 (159)
                      .|..+...+.++.|+.+|.++.+..  +               ..+.+++|.+|..    .+++++|+.+++++...  .
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g--~---------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN--S---------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC--C---------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence            5666666667777888888877751  1               3447788888877    77888888888888776  5


Q ss_pred             cHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcC
Q 031461           92 NVKALYRRSQAHLK----TSELEKAEADIKRALTID  123 (159)
Q Consensus        92 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~  123 (159)
                      ++.+.+++|.+|..    .+++++|+.+|+++....
T Consensus        92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            67788888888887    788888888888887763

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.82  E-value=1.5e-07  Score=70.29  Aligned_cols=106  Identities=10%  Similarity=-0.031  Sum_probs=65.1

Q ss_pred             HHHHhhhHHHHcc---cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh----hCHHHHHHHHHH
Q 031461           12 RKKHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL----EDYSETSSLCTK   84 (159)
Q Consensus        12 ~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~   84 (159)
                      .+..+|..+...|   ++.+|+..|.++....+..               ...++++|.+|...    +++++|+.+|++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~---------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~  242 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT---------------AQRVDSVARVLGDATLGTPDEKTAQALLEK  242 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC---------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH---------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence            4567788888888   9999999999999875543               22235555555444    456666666666


Q ss_pred             HhhcCCccHHHHHHHHHH-H--HhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           85 VLELEPLNVKALYRRSQA-H--LKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        85 al~~~~~~~~~~~~~~~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      +.   |+++.+++++|.+ +  ...+++++|+.+|+++...  .++.+...++.+.
T Consensus       243 aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y  293 (452)
T 3e4b_A          243 IA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLY  293 (452)
T ss_dssp             HG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             Hc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            55   5555666666655 3  3455555566555555532  2445555555444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.81  E-value=4.9e-08  Score=71.69  Aligned_cols=118  Identities=17%  Similarity=0.102  Sum_probs=89.9

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC------------------ChHHHHH-------------HH
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF------------------TDDEKHQ-------------AN   55 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~------------------~~~~~~~-------------~~   55 (159)
                      ......+...|..++..|+|++|+.+|.+++...+..+..                  ..+....             ..
T Consensus        52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  131 (434)
T 4b4t_Q           52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV  131 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence            3445678889999999999999999999888865442111                  0000000             01


Q ss_pred             HHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461           56 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP  124 (159)
Q Consensus        56 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  124 (159)
                      .++..++.++|.++...|+|++|...+++++..      .|....++...|.+|...|++++|...+++++...+
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            234567889999999999999999999999865      344578999999999999999999999999987743

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.79  E-value=2e-07  Score=68.40  Aligned_cols=86  Identities=17%  Similarity=0.126  Sum_probs=66.0

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcC------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC------CCcH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELE------PLNVKALYRRSQAHLKTSELEKAEADIKRALTID------PNNR  127 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~  127 (159)
                      .+..+++.++...|++++|+.+++.++...      +.....+.++|.+|...|+|++|...+.+++...      |...
T Consensus        96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~  175 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV  175 (434)
T ss_dssp             HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence            456778899999999999999999998653      3457889999999999999999999999987652      2224


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 031461          128 VVKLVYMELKDKQREYAK  145 (159)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~  145 (159)
                      .+......+...++...+
T Consensus       176 ~~~~~~~~~~~~~~~~~~  193 (434)
T 4b4t_Q          176 DVHLLESKVYHKLRNLAK  193 (434)
T ss_dssp             HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhCcHHH
Confidence            555666666555544443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.78  E-value=4.4e-07  Score=68.16  Aligned_cols=107  Identities=9%  Similarity=-0.061  Sum_probs=64.3

Q ss_pred             HHHHHHhhhHHHH----cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh----hhCHHHHHHH
Q 031461           10 CERKKHDGNLLFR----AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSL   81 (159)
Q Consensus        10 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~   81 (159)
                      ++.+...|..++.    .++++.|+.+|.++++..  +               ..+++.+|.+|..    .+++++|+.+
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~---------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~  101 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--Y---------------TPAEYVLGLRYMNGEGVPQDYAQAVIW  101 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            4556677777777    788888888888887641  1               2335556666665    5666666666


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461           82 CTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELK  137 (159)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  137 (159)
                      +++++..  .++.+++.+|.+|..    .+++++|+.+|+++...  +++.+...++.+.
T Consensus       102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y  157 (490)
T 2xm6_A          102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAY  157 (490)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            6666543  355556666666655    55666666666665443  3444444444444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.77  E-value=1.7e-07  Score=77.85  Aligned_cols=106  Identities=13%  Similarity=0.078  Sum_probs=89.5

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC-
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP-   90 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-   90 (159)
                      .+...|..++..|+|++|+.+|.++-                       .|..+|.++.++|++++|+..+.++....+ 
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence            45679999999999999999999852                       188999999999999999999998855443 


Q ss_pred             ------------------------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           91 ------------------------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        91 ------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                                              .+++.+..++..|...|.|++|+..++.++.++|.+......++.+..+.
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence                                    24455667888899999999999999999999999999998888886554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.76  E-value=8.2e-08  Score=71.29  Aligned_cols=104  Identities=14%  Similarity=0.082  Sum_probs=66.5

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC-
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP-   90 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-   90 (159)
                      .+...|+.++..|.|++|+.+|.++        +.               |..+|.|+.++|+|++|+..+.++.  +| 
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n---------------~~~LA~~L~~Lg~yq~AVea~~KA~--~~~  178 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SN---------------FGRLASTLVHLGEYQAAVDGARKAN--STR  178 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TC---------------HHHHHHHHHTTTCHHHHHHHHHHHT--CHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hh---------------HHHHHHHHHHhccHHHHHHHHHHcC--Cch
Confidence            4556677777777777777777654        11               6677777777777777777777662  22 


Q ss_pred             --------------------------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           91 --------------------------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        91 --------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                                                .++.-...++.+|...|.+++|+..++.++.++|.+..+...++.+..+.
T Consensus       179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          179 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence                                      12222334567899999999999999999999999999999998876544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.76  E-value=3.2e-07  Score=56.77  Aligned_cols=84  Identities=18%  Similarity=0.151  Sum_probs=72.9

Q ss_pred             HHHHhhHHHHHhhhh---CHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLE---DYSETSSLCTKVLELEPL-NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      ..+.++.|.+..+.+   +..+++..++..++.+|. .-+++|.+|..++++|+|++|..+...++..+|+|..+.....
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            345778888877766   456789999999998884 5899999999999999999999999999999999999999988


Q ss_pred             HHHHHHHH
Q 031461          135 ELKDKQRE  142 (159)
Q Consensus       135 ~~~~~~~~  142 (159)
                      .|..++.+
T Consensus       120 ~Ie~ki~k  127 (134)
T 3o48_A          120 MVEDKIQK  127 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88877765

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.74  E-value=1.7e-07  Score=70.05  Aligned_cols=101  Identities=14%  Similarity=0.032  Sum_probs=64.3

Q ss_pred             HHhhhHHHHc----ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHH-H--hhhhCHHHHHHHHHHHh
Q 031461           14 KHDGNLLFRA----GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC-K--LKLEDYSETSSLCTKVL   86 (159)
Q Consensus        14 ~~~g~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~al   86 (159)
                      ...|..+...    +++++|+.+|.++.   +.++               .+++++|.+ +  ...+++++|+.++++++
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~---------------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYP---------------ASWVSLAQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST---------------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH---------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            4556665443    57778888887776   3332               236666666 3  45667777777777766


Q ss_pred             hcCCccHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           87 ELEPLNVKALYRRSQAHLKTS-----ELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ...  ++.+++.+|.+|. .|     ++++|+.+|+++.   |.++.+...++.+..
T Consensus       279 ~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          279 AAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR  329 (452)
T ss_dssp             HTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred             HCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence            443  6666777777666 44     7777777777766   666666666666553

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.74  E-value=1.5e-07  Score=66.05  Aligned_cols=89  Identities=11%  Similarity=0.042  Sum_probs=77.2

Q ss_pred             cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh-----hCHHHHHHHHHHHhhcCCcc-HHHHHH
Q 031461           25 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-----EDYSETSSLCTKVLELEPLN-VKALYR   98 (159)
Q Consensus        25 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~~~~-~~~~~~   98 (159)
                      ....|...++++++++|..             +...++..+|..|...     |+.++|..+|++++.++|+. +...+.
T Consensus       178 ~l~~A~a~lerAleLDP~~-------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~  244 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSY-------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHIT  244 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTH-------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCc-------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHH
Confidence            3577888888999887762             1256799999999995     99999999999999999975 999999


Q ss_pred             HHHHHHhh-CCHHHHHHHHHHHHhcCCCc
Q 031461           99 RSQAHLKT-SELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        99 ~~~~~~~~-~~~~~A~~~~~~al~~~p~~  126 (159)
                      .|..+... |+++.|...+++++...|..
T Consensus       245 YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          245 YADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999885 99999999999999988763

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.72  E-value=8.8e-07  Score=64.30  Aligned_cols=119  Identities=10%  Similarity=-0.052  Sum_probs=86.5

Q ss_pred             HHHhhhHHHHc---ccHHHHHHHHHHHHHHhcccCC-----------------CChHHHHHH------------HHHHHH
Q 031461           13 KKHDGNLLFRA---GKYWRASKKYEKAAKIIEFHHS-----------------FTDDEKHQA------------NGLRLS   60 (159)
Q Consensus        13 ~~~~g~~~~~~---~~~~~A~~~~~~al~~~~~~~~-----------------~~~~~~~~~------------~~~~~~   60 (159)
                      +.-+|..++..   .....|+.+|+++++++|..+.                 ........+            .+....
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~  278 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI  278 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH
Confidence            44566666654   4568999999999999886321                 111111111            011122


Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  133 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  133 (159)
                      ++..+|..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|+..|.+|+.++|..+ ...+.
T Consensus       279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~  349 (372)
T 3ly7_A          279 IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWI  349 (372)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHH
Confidence            3445677777889999999999999999974 67889999999999999999999999999999875 34443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.72  E-value=4.5e-07  Score=56.93  Aligned_cols=94  Identities=15%  Similarity=-0.015  Sum_probs=80.8

Q ss_pred             cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461           23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  102 (159)
Q Consensus        23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  102 (159)
                      .+++++|+.+|.++.+...  +.             .  .  +|.+|...+.+++|+.+++++...  .++.+.+++|.+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~--~~-------------a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~   66 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNE--MF-------------G--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--TT-------------H--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCC--Hh-------------h--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            3689999999999998742  21             1  3  999999999999999999999987  689999999999


Q ss_pred             HHh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461          103 HLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus       103 ~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      |..    .+++++|+.+|+++...  .++.+...++.+...
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            999    89999999999999876  678888888887755

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.68  E-value=6e-07  Score=56.23  Aligned_cols=84  Identities=18%  Similarity=0.150  Sum_probs=72.4

Q ss_pred             HHHHhhHHHHHhhhhC---HHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLED---YSETSSLCTKVLELEP-LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      ..+.++.|.+..+...   ..+++..++..++..| ..-+++|.+|..++++|+|++|..+.+.+++.+|+|..+.....
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            4457788888888664   5578899999999888 46889999999999999999999999999999999999998888


Q ss_pred             HHHHHHHH
Q 031461          135 ELKDKQRE  142 (159)
Q Consensus       135 ~~~~~~~~  142 (159)
                      .+..++.+
T Consensus       119 ~Ie~~i~k  126 (144)
T 1y8m_A          119 MVEDKIQK  126 (144)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.68  E-value=8.4e-07  Score=63.10  Aligned_cols=122  Identities=11%  Similarity=-0.051  Sum_probs=90.9

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc-
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-   91 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-   91 (159)
                      +.-.|.++...|++++|+..+.+++...+. ..            ...++..++.++..+|+++.|...+++..+.+|+ 
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-~~------------~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~  169 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEA-EG------------TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT  169 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-TT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCC-cC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            457889999999999999999999876541 11            1566889999999999999999999999999993 


Q ss_pred             ---cHHHHHHH--HHHHHhhC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 031461           92 ---NVKALYRR--SQAHLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA  148 (159)
Q Consensus        92 ---~~~~~~~~--~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~  148 (159)
                         ....+..+  |.+....|  ++.+|...|+++....|+.......+. +...+++..+.+.
T Consensus       170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~  232 (310)
T 3mv2_B          170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG  232 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence               23334444  44466667  999999999999888886333333333 6666666666544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.63  E-value=4.7e-07  Score=57.68  Aligned_cols=79  Identities=14%  Similarity=0.040  Sum_probs=65.8

Q ss_pred             HHHHHHhhhHHHHcc---cHHHHHHHHHHHHHHh-cccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461           10 CERKKHDGNLLFRAG---KYWRASKKYEKAAKII-EFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      .+..+..|+.+.+.+   +..+||.++..+++.. |.              ....+++++|..+.++|+|++|+.+++.+
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--------------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l   97 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--------------EQRDYVFYLAVGNYRLKEYEKALKYVRGL   97 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--------------chHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            466788899999888   7779999999999975 31              12567899999999999999999999999


Q ss_pred             hhcCCccHHHHHHHHHH
Q 031461           86 LELEPLNVKALYRRSQA  102 (159)
Q Consensus        86 l~~~~~~~~~~~~~~~~  102 (159)
                      ++++|++..+..-+..+
T Consensus        98 L~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           98 LQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHCTTCHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHH
Confidence            99999998876554433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.62  E-value=5.9e-07  Score=63.87  Aligned_cols=103  Identities=13%  Similarity=0.089  Sum_probs=81.1

Q ss_pred             HHHHhhhHHHHcc--cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-
Q 031461           12 RKKHDGNLLFRAG--KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-   88 (159)
Q Consensus        12 ~~~~~g~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-   88 (159)
                      .....|++.+..|  ++.+|+..|.++....|....             ..++++   ++..+|++++|...++.++.. 
T Consensus       178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~-------------~~lLln---~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKT-------------QLGLLN---LHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHH-------------HHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCccc-------------HHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence            3444565566666  999999999998765443100             122333   899999999999999988877 


Q ss_pred             ---------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 031461           89 ---------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLV  132 (159)
Q Consensus        89 ---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  132 (159)
                               +|+++.++.+++.+.+.+|+  +|.+.+.++...+|+++-+...
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence                     58899999999999999998  8999999999999999876543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.50  E-value=1.6e-06  Score=50.78  Aligned_cols=70  Identities=13%  Similarity=0.050  Sum_probs=60.4

Q ss_pred             HHHHHHhhhHHHHccc---HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461           10 CERKKHDGNLLFRAGK---YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ++.+...|..++..++   ..+|...+.+++.++|.+               ..++..+|..++..|+|++|+.++++++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~---------------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN---------------EAALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4677888888876655   799999999999998887               4558899999999999999999999999


Q ss_pred             hcCCccHH
Q 031461           87 ELEPLNVK   94 (159)
Q Consensus        87 ~~~~~~~~   94 (159)
                      ..+|.++.
T Consensus        71 ~~~p~~~~   78 (93)
T 3bee_A           71 DSNDPNLD   78 (93)
T ss_dssp             TCCCTTCC
T ss_pred             hhCCCCcc
Confidence            99998533

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.47  E-value=2.4e-06  Score=71.16  Aligned_cols=93  Identities=11%  Similarity=0.005  Sum_probs=61.1

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      +.....+...|..+...|++++|+..|.++     .+               ...|.+.|.++.++|+|++|++++..++
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD---------------~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DD---------------PSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334556777788888888888888888765     12               2236677777777777777777776655


Q ss_pred             hcCCc---------------------------cHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461           87 ELEPL---------------------------NVKALYRRSQAHLKTSELEKAEADIKRA  119 (159)
Q Consensus        87 ~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a  119 (159)
                      +..++                           +...++..|..+...|+|++|+.+|.++
T Consensus      1162 k~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1162 KKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             hhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence            44321                           2334556777777777777777777665

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.44  E-value=9.2e-06  Score=52.21  Aligned_cols=116  Identities=9%  Similarity=0.040  Sum_probs=88.0

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC-ChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-TDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--   89 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--   89 (159)
                      +++....++..+.|+.|+-....++.+...++.. ++       .....++..+|..++..++|..|...|+++|+..  
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp-------~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~   95 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP-------PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA   95 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH-------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            6677788899999999999999999987665542 22       2345568899999999999999999999987542  


Q ss_pred             -Cc----------------------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           90 -PL----------------------NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        90 -~~----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                       +.                      ..+.-|.++.||..++++++|+..++.+-.- ...+.+...++++
T Consensus        96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakL  164 (167)
T 3ffl_A           96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANL  164 (167)
T ss_dssp             C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHH
T ss_pred             HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHH
Confidence             11                      1267799999999999999999887654211 2345666666654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.36  E-value=3.5e-06  Score=62.68  Aligned_cols=90  Identities=6%  Similarity=-0.065  Sum_probs=69.4

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-CCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH-HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      +..+..+...|.++..+|+|++|+.+|.+++.+.... ++.        .+.....++++|.+|..+|++++|+..+++|
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~--------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS--------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC--------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4467788899999999999999999999999986431 221        1334777999999999999999999999999


Q ss_pred             hhc-----CCccH---HHHHHHHHHHH
Q 031461           86 LEL-----EPLNV---KALYRRSQAHL  104 (159)
Q Consensus        86 l~~-----~~~~~---~~~~~~~~~~~  104 (159)
                      +.+     .|+++   ..+.+++.+..
T Consensus       398 l~i~~~~lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          398 FDIMRVTHGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             HHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            865     45554   34444555543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.31  E-value=3.7e-06  Score=62.62  Aligned_cols=82  Identities=12%  Similarity=-0.038  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      +..+..+...|.++..+|+|++|+.+|.+++.+....-..+       .+.....++|+|.+|..+|++++|+..+++|+
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            34577888999999999999999999999999864321111       12346779999999999999999999999998


Q ss_pred             hc-----CCccHHH
Q 031461           87 EL-----EPLNVKA   95 (159)
Q Consensus        87 ~~-----~~~~~~~   95 (159)
                      .+     .|+++..
T Consensus       410 ~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          410 AIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHHTCTTCHHH
T ss_pred             HHHHHHcCCCChHH
Confidence            65     4666543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.18  E-value=1e-06  Score=65.47  Aligned_cols=66  Identities=12%  Similarity=-0.005  Sum_probs=41.5

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      ..+.++|.++...|.|++|..+|.++        ..+..+|.++..+|+|++|++.++++     +++.++.....+-.
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv  188 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV  188 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence            36889999999999999999999876        46889999999999999999999999     35555555444333

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=98.10  E-value=0.0002  Score=52.53  Aligned_cols=112  Identities=13%  Similarity=0.015  Sum_probs=92.2

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-------CChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS-------FTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC   82 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   82 (159)
                      -+.+...|......|+...|+..+..|+.+.....-       +-...-..+...+..+...++..+...|++.+|+..+
T Consensus       115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l  194 (388)
T 2ff4_A          115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL  194 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            345566676777789999999999999998643211       1123345567777888889999999999999999999


Q ss_pred             HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461           83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  121 (159)
Q Consensus        83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  121 (159)
                      ..++..+|.+-.++..+-.+++..|+..+|+..|+++..
T Consensus       195 ~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          195 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988744

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.09  E-value=4e-05  Score=47.17  Aligned_cols=78  Identities=14%  Similarity=0.024  Sum_probs=58.7

Q ss_pred             HHHHHhhhHHHHcccHHH---HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461           11 ERKKHDGNLLFRAGKYWR---ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      +..+..|+.+.+.++...   +|.++...+....  |           .....+++.+|..+.++|+|.+|..+++.+|+
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~--p-----------~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--K-----------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--H-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--c-----------chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            445666777777766655   8888877666420  1           12456789999999999999999999999999


Q ss_pred             cCCccHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQ  101 (159)
Q Consensus        88 ~~~~~~~~~~~~~~  101 (159)
                      ++|+|..+.--...
T Consensus       103 ~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A          103 TEPQNNQAKELERL  116 (126)
T ss_dssp             HCTTCHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHH
Confidence            99999887654433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.05  E-value=0.00055  Score=53.80  Aligned_cols=141  Identities=9%  Similarity=0.014  Sum_probs=94.1

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcc--------cCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKIIEF--------HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      ...+......|+++.|...|.+++...+.        .|. +++.......-...+|...+.+....|..+.|...|.+|
T Consensus       382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~-~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A  460 (679)
T 4e6h_A          382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT-NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC  460 (679)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc-chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44555666788999999999999986421        111 111111111122345777778878888999999999999


Q ss_pred             hhc-CCccHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461           86 LEL-EPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  156 (159)
Q Consensus        86 l~~-~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (159)
                      ++. .+.....+...|.+-...+ +++.|...|+.+++..|+++..+..........++. +.-+..|.+...
T Consensus       461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~-~~AR~lferal~  532 (679)
T 4e6h_A          461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE-SQVKSLFESSID  532 (679)
T ss_dssp             HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHTT
T ss_pred             HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Confidence            887 4445667777777766665 488999999999999998888877776666555433 222445555443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.92  E-value=0.00039  Score=43.01  Aligned_cols=77  Identities=18%  Similarity=0.085  Sum_probs=57.9

Q ss_pred             HHHHHhhhHHHHcc---cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461           11 ERKKHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus        11 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      +..+..|+.+.+..   +...+|.++...++..|..              ...+++.+|..+.++|+|.+|..+++.+++
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--------------~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--------------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            33455566666554   4457888888877754321              366789999999999999999999999999


Q ss_pred             cCCccHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQ  101 (159)
Q Consensus        88 ~~~~~~~~~~~~~~  101 (159)
                      ++|+|..+.--...
T Consensus       107 ~eP~N~QA~~Lk~~  120 (134)
T 3o48_A          107 HERNNKQVGALKSM  120 (134)
T ss_dssp             TCTTCHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHH
Confidence            99999887654443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.90  E-value=0.00039  Score=43.56  Aligned_cols=76  Identities=18%  Similarity=0.090  Sum_probs=58.1

Q ss_pred             HHHHHhhhHHHHccc---HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461           11 ERKKHDGNLLFRAGK---YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      +..++.|+.+.+..+   -..+|.++...+...|..              ...+++.+|..+.++|+|.+|..+++.+++
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--------------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            445666667766654   457888888877743321              356789999999999999999999999999


Q ss_pred             cCCccHHHHHHHH
Q 031461           88 LEPLNVKALYRRS  100 (159)
Q Consensus        88 ~~~~~~~~~~~~~  100 (159)
                      ++|+|..+.--..
T Consensus       106 ~eP~n~QA~~Lk~  118 (144)
T 1y8m_A          106 HERNNKQVGALKS  118 (144)
T ss_dssp             TCCCCHHHHHHHH
T ss_pred             cCCCcHHHHHHHH
Confidence            9999987755443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.84  E-value=0.00017  Score=52.38  Aligned_cols=67  Identities=9%  Similarity=-0.069  Sum_probs=56.9

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      .+...|..++..|++++|+..+.+++.+.++                ...+..+|.++...|++++|...+.+|++++|.
T Consensus       279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s----------------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          279 IYQIKAVSALVKGKTDESYQAINTGIDLEMS----------------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            3445666777889999999999999999643                334788999999999999999999999999997


Q ss_pred             cHH
Q 031461           92 NVK   94 (159)
Q Consensus        92 ~~~   94 (159)
                      .+.
T Consensus       343 ~~t  345 (372)
T 3ly7_A          343 ANT  345 (372)
T ss_dssp             HHH
T ss_pred             cCh
Confidence            764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.82  E-value=0.00043  Score=54.41  Aligned_cols=116  Identities=10%  Similarity=0.042  Sum_probs=87.8

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHHhhcCC
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEP   90 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~   90 (159)
                      .....++...+.|..+.|...|.+|+...+...              ..+|...|..-...+ +++.|...|+.+++..|
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--------------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p  501 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--------------PDIYLENAYIEYHISKDTKTACKVLELGLKYFA  501 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC--------------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--------------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence            344445555667889999999999998733221              233555666655654 59999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN---NRVVKLVYMELKDKQR  141 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~  141 (159)
                      +++..+...+......|+.+.|...|++++...|+   ...++..........+
T Consensus       502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G  555 (679)
T 4e6h_A          502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG  555 (679)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred             CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999884   4455665555555443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.78  E-value=0.002  Score=40.78  Aligned_cols=95  Identities=8%  Similarity=-0.017  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhh
Q 031461           27 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT  106 (159)
Q Consensus        27 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  106 (159)
                      +.-++.|++|+...|...       ...+.....++...|.. ...++.++|...|+.++.+....++.|+..|+.-.+.
T Consensus        36 ~rlrd~YerAia~~Pp~k-------~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRq  107 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDK-------YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQ  107 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGG-------GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCccc-------cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence            888899999999876542       12234455666677755 5679999999999999998877899999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHH
Q 031461          107 SELEKAEADIKRALTIDPNNRVV  129 (159)
Q Consensus       107 ~~~~~A~~~~~~al~~~p~~~~~  129 (159)
                      |+.+.|.+.+.+++.+.|...+.
T Consensus       108 gnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A          108 GNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             TCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             ccHHHHHHHHHHHhccCCCcHHH
Confidence            99999999999999999976544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.77  E-value=0.00042  Score=44.55  Aligned_cols=94  Identities=13%  Similarity=0.066  Sum_probs=62.9

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh----------HHHHHHHHHHHHHHhhHHHHHhhhhCHHHH
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD----------DEKHQANGLRLSCYLNNAACKLKLEDYSET   78 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A   78 (159)
                      .++.+.-.|+.+|..++|..|...|.++|.....-+....          ........-...+.+.+|.|+.+++++.+|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            4778889999999999999999999999987542111100          000000011235678899999999999999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHH
Q 031461           79 SSLCTKVLELEPLNVKALYRRSQAH  103 (159)
Q Consensus        79 ~~~~~~al~~~~~~~~~~~~~~~~~  103 (159)
                      +..++.+- ....+++.-..+|..|
T Consensus       142 i~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             HHHHhcCC-chhcCHHHHHHHHHHh
Confidence            99875532 2234566666666655

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.77  E-value=8.3e-05  Score=52.26  Aligned_cols=68  Identities=9%  Similarity=0.026  Sum_probs=58.4

Q ss_pred             hhCHHHHHHHHHHHhhcCCc--cHHHHHHHHHHHHhh-----CCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Q 031461           72 LEDYSETSSLCTKVLELEPL--NVKALYRRSQAHLKT-----SELEKAEADIKRALTIDPNN-RVVKLVYMELKDK  139 (159)
Q Consensus        72 ~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~  139 (159)
                      ++....|...+++++.++|+  +..++..+|.+|...     |+.++|...|++++.++|+. ..+....+.....
T Consensus       176 l~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          176 PDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred             HHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence            34578899999999999999  566999999999996     99999999999999999975 7777777775533

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.0016  Score=51.59  Aligned_cols=62  Identities=21%  Similarity=0.186  Sum_probs=56.2

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      ..++..-+..++..|+|+-|+.++++++...|..-.+|+.++.+|..+|+|+.|+-.+..+-
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            34566668888889999999999999999999999999999999999999999999888874

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.38  E-value=0.014  Score=44.09  Aligned_cols=125  Identities=10%  Similarity=0.007  Sum_probs=85.1

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh--------HHH-HHH----------------HHHHHHHHhhHHH
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD--------DEK-HQA----------------NGLRLSCYLNNAA   67 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------~~~-~~~----------------~~~~~~~~~~~a~   67 (159)
                      ....+.-....|+.+.|...|.+|+.. |.+...-.        +.. ..+                ......+|...+.
T Consensus       216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~  294 (493)
T 2uy1_A          216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN  294 (493)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence            444555667789999999999999998 76431100        000 000                0111245666677


Q ss_pred             HHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           68 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        68 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      .....+..+.|...+.++ ...+.....+...|..-+..+ +.+.|...|+.++...|+++..+.........
T Consensus       295 ~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~  366 (493)
T 2uy1_A          295 YVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR  366 (493)
T ss_dssp             HHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            777788999999999999 443345667777777776666 69999999999999999988765555444433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.21  E-value=0.012  Score=43.25  Aligned_cols=100  Identities=11%  Similarity=-0.020  Sum_probs=78.3

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC----
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE----   89 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----   89 (159)
                      ..+|..++..|+|.+|+..+.+.........+.         .+...++......|..++++.++...+..+....    
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~---------~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~  173 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDK---------NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY  173 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc---------hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence            367899999999999999999999876542211         4456678888899999999999999999886543    


Q ss_pred             Cc-c--HHHHHHHHHHHH-hhCCHHHHHHHHHHHHhc
Q 031461           90 PL-N--VKALYRRSQAHL-KTSELEKAEADIKRALTI  122 (159)
Q Consensus        90 ~~-~--~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~  122 (159)
                      ++ .  +.....-|..+. ..++|..|...|-.++.-
T Consensus       174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            21 1  334455788888 899999999999988744

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.0086  Score=44.49  Aligned_cols=100  Identities=12%  Similarity=-0.043  Sum_probs=79.7

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc---C
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL---E   89 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~   89 (159)
                      ...+|..+++.|+++.|++.|.++.........            ...++.....+++..++|..+..+++++-.+   .
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~------------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~  201 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA------------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG  201 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence            567899999999999999999999887665433            2567888889999999999999999998654   2


Q ss_pred             Ccc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461           90 PLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDP  124 (159)
Q Consensus        90 ~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  124 (159)
                      +++   .......|.++...++|..|...|..++....
T Consensus       202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            222   34455678888899999999999988765543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.90  E-value=0.017  Score=43.81  Aligned_cols=80  Identities=10%  Similarity=0.016  Sum_probs=69.6

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      .++..+|....-...+..|..+|.+|+.+.|++...+..+|.+....|+.-+|+-+|.+++......+.+...+..+...
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            35667888888888899999999999999999999999999999999999999999999998876677777777666554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.82  E-value=0.099  Score=39.46  Aligned_cols=108  Identities=12%  Similarity=-0.048  Sum_probs=78.7

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHHhhcCCcc
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEPLN   92 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~   92 (159)
                      ...+....+.+..+.|...|.++ . .+.   .+           ..+|...|..-...+ +++.|...++.++...|+.
T Consensus       290 ~~y~~~~~r~~~~~~AR~i~~~A-~-~~~---~~-----------~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~  353 (493)
T 2uy1_A          290 INHLNYVLKKRGLELFRKLFIEL-G-NEG---VG-----------PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS  353 (493)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHH-T-TSC---CC-----------HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHh-h-CCC---CC-----------hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence            33344444567889999999998 3 222   11           234555566666566 6999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      +..+...++.....|+.+.|...|+++    +....++..........+
T Consensus       354 ~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G  398 (493)
T 2uy1_A          354 TLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVG  398 (493)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC
Confidence            988888888889999999999999998    345566666666555554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.094  Score=39.15  Aligned_cols=105  Identities=13%  Similarity=0.075  Sum_probs=78.9

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh-
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE-   87 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-   87 (159)
                      .+.....++..+...|++.+|.........-....  .+       ......++......+...++|..|...++++.. 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~  206 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--ME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILKK  206 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--cc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            45666788999999999999999998876542221  11       133456677888899999999999999998742 


Q ss_pred             --cCCcc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           88 --LEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        88 --~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                        ..+..    ...+...|..+...++|.+|..+|..++..
T Consensus       207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              22222    445667888999999999999999888754

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=96.73  E-value=0.068  Score=38.03  Aligned_cols=119  Identities=14%  Similarity=0.082  Sum_probs=75.9

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh--hC-----HHHHHHH--
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--ED-----YSETSSL--   81 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~-----~~~A~~~--   81 (159)
                      ......|-.++..|++.+|+..|+.+|...+-....+..+..+..++...+...+--+-+++  +.     ....++.  
T Consensus       115 ~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAA  194 (325)
T 3mv2_A          115 NEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAA  194 (325)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            33566899999999999999999999999876554455555666555555433222222222  11     1111111  


Q ss_pred             HHHHhhcCCccHHHHHHHHH-HHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461           82 CTKVLELEPLNVKALYRRSQ-AHLKTSELEKAEADIKRALTIDPNNRVV  129 (159)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~  129 (159)
                      |=.-.++.|.+..--++.|. ..++.++|.-|....++.+++.|..+.+
T Consensus       195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a  243 (325)
T 3mv2_A          195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA  243 (325)
T ss_dssp             HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHH
T ss_pred             HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH
Confidence            11112445555555555555 4689999999999999999999975433

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.72  E-value=0.036  Score=38.45  Aligned_cols=66  Identities=9%  Similarity=0.087  Sum_probs=59.4

Q ss_pred             HHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461           68 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  133 (159)
Q Consensus        68 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  133 (159)
                      -.++.|++++|+..+...++.+|.++..-..+.+.+.-.|+++.|.+.++.+..++|.....-..+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y   71 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL   71 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            346789999999999999999999999999999999999999999999999999999886554443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.0084  Score=47.63  Aligned_cols=60  Identities=18%  Similarity=0.262  Sum_probs=52.5

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      ..+...+.-+..+|+|+.|+.+..+|+...|.+               ..+|..++.||..+|+|+.|+-.++-+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse---------------F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDS---------------FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh---------------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            456666777788999999999999999998775               566999999999999999999988876

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.51  E-value=0.13  Score=38.99  Aligned_cols=98  Identities=11%  Similarity=0.015  Sum_probs=67.9

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC-CccH
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-PLNV   93 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~   93 (159)
                      ..-..+.+.|++++|...|....... -.|.             ..+|..+-..+.+.|++++|...+++..... ..+.
T Consensus       110 ~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd-------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~  175 (501)
T 4g26_A          110 NGARLAVAKDDPEMAFDMVKQMKAFG-IQPR-------------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE  175 (501)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHTT-CCCC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCc-------------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence            33456677888888888887765431 1111             3457777777888888888888888877643 1255


Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHh--cCCCc
Q 031461           94 KALYRRSQAHLKTSELEKAEADIKRALT--IDPNN  126 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~  126 (159)
                      ..|..+-.++...|+.++|...+++...  ..|+.
T Consensus       176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~  210 (501)
T 4g26_A          176 PELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK  210 (501)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence            6677788888888888888888887754  35544

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.43  E-value=0.14  Score=36.37  Aligned_cols=116  Identities=16%  Similarity=0.230  Sum_probs=76.9

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh--hCH-----HHHHHHHHH
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--EDY-----SETSSLCTK   84 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~-----~~A~~~~~~   84 (159)
                      .....|-.++..|++.+|+..|+.+|...+-....+..+..+..++...+...+--+-+++  ++.     ++..+.++-
T Consensus       104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL  183 (320)
T 3mkr_B          104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM  183 (320)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence            3567899999999999999999999999876655555666666666655543332222232  221     222222222


Q ss_pred             H-----hhcCCccHHHHHHHHH-HHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461           85 V-----LELEPLNVKALYRRSQ-AHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        85 a-----l~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      +     .++.|.+..--++.|. ..++.++|.-|...-++.+.+.|..+
T Consensus       184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  232 (320)
T 3mkr_B          184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE  232 (320)
T ss_dssp             HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence            2     2445656555555555 46889999999999999999988643

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.35  E-value=0.034  Score=42.11  Aligned_cols=79  Identities=16%  Similarity=0.022  Sum_probs=69.0

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      .+...|+.......+..|..+|.+|+.+.|..+.               .++.+|.++...|+.-+|+-+|-+++.....
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~---------------~~nqLavla~~~~~~l~a~y~y~rsl~~~~P  218 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ---------------PYNQLAILASSKGDHLTTIFYYCRSIAVKFP  218 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc---------------hHHHHHHHHhcccccHHHHHHHHHHHhcCCC
Confidence            4567899999999999999999999999988754               3999999999999999999999999988777


Q ss_pred             cHHHHHHHHHHHHh
Q 031461           92 NVKALYRRSQAHLK  105 (159)
Q Consensus        92 ~~~~~~~~~~~~~~  105 (159)
                      .+.+.-++...+..
T Consensus       219 f~~a~~nL~~~f~~  232 (497)
T 1ya0_A          219 FPAASTNLQKALSK  232 (497)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHH
Confidence            88888887777654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.03  E-value=0.16  Score=33.07  Aligned_cols=70  Identities=16%  Similarity=0.082  Sum_probs=55.0

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhh--cC---------------CccHHH-HHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLE--LE---------------PLNVKA-LYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~---------------~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      ..+--+.|+-++++|..|+.+++..+.  .+               |.+.+. +..+|.++...|+-++|+..+......
T Consensus        64 s~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A           64 SKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            355667899999999999999999982  22               344444 445899999999999999999999888


Q ss_pred             CCCcHHHH
Q 031461          123 DPNNRVVK  130 (159)
Q Consensus       123 ~p~~~~~~  130 (159)
                      +|--+.+.
T Consensus       144 ~~lf~~vE  151 (242)
T 3kae_A          144 SFLFSPVE  151 (242)
T ss_dssp             CCCHHHHH
T ss_pred             ccccchHH
Confidence            77554443

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=95.78  E-value=0.041  Score=31.10  Aligned_cols=40  Identities=18%  Similarity=0.116  Sum_probs=34.8

Q ss_pred             CChHH-HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461            1 MDTHE-KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII   40 (159)
Q Consensus         1 ~s~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   40 (159)
                      ||..+ -+..+-.+...|...-+.|+|.+|+.+|..+++..
T Consensus         1 M~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l   41 (83)
T 2v6y_A            1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVL   41 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            66666 67788889999999999999999999999999974

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.77  E-value=0.44  Score=36.07  Aligned_cols=103  Identities=7%  Similarity=0.013  Sum_probs=71.8

Q ss_pred             ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC-CccHHHHHHHHHH
Q 031461           24 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-PLNVKALYRRSQA  102 (159)
Q Consensus        24 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  102 (159)
                      +..+.|...|..-.... -.|+             ..+|..+-..+.+.|++++|...+++..... +.+...|..+-..
T Consensus        84 ~~l~~A~~lf~~M~~~G-~~Pd-------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~  149 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDK-VVPN-------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG  149 (501)
T ss_dssp             HHHHHHHHHHHHHHHTT-CCCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhC-CCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHH
Confidence            34667777776644321 1111             4568888899999999999999999987653 2367778888889


Q ss_pred             HHhhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHH
Q 031461          103 HLKTSELEKAEADIKRALTI--DPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus       103 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~  141 (159)
                      |...|+.++|...|......  .|+. .....+-....+.+
T Consensus       150 ~~~~g~~~~A~~l~~~M~~~G~~Pd~-~ty~~Li~~~~~~g  189 (501)
T 4g26_A          150 FCRKGDADKAYEVDAHMVESEVVPEE-PELAALLKVSMDTK  189 (501)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhhCC
Confidence            99999999999999988654  5654 33344434333333

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=95.43  E-value=0.067  Score=30.22  Aligned_cols=40  Identities=18%  Similarity=0.175  Sum_probs=33.5

Q ss_pred             CChHH-HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461            1 MDTHE-KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII   40 (159)
Q Consensus         1 ~s~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   40 (159)
                      |||.. -+..+-.+...|...-+.|+|.+|+.+|..+++..
T Consensus         9 ~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l   49 (83)
T 2w2u_A            9 MSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVL   49 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            45554 45578888899999999999999999999999974

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.17  E-value=0.084  Score=40.13  Aligned_cols=69  Identities=14%  Similarity=0.074  Sum_probs=57.3

Q ss_pred             HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC-----ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           58 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEP-----LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      ...+++.+-..|+..+.|+.|.....++.-..+     .....+|..|.++...++|.+|..++..|+...|.+
T Consensus       230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            355677778889999999999999999853221     236788899999999999999999999999988765

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.09  E-value=0.68  Score=34.03  Aligned_cols=127  Identities=19%  Similarity=0.058  Sum_probs=84.2

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhc-------------------ccCCCChH---------HHHHHH-HH--HH
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIE-------------------FHHSFTDD---------EKHQAN-GL--RL   59 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------------------~~~~~~~~---------~~~~~~-~~--~~   59 (159)
                      ....+.|..+...|++++-..+........+                   ..+...+.         +|...+ ..  +.
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999888887754433322                   22222111         111111 11  12


Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhc----CC--ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCcHHHH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLEL----EP--LNVKALYRRSQAHLKTSELEKAEADIKRALTID---PNNRVVK  130 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~  130 (159)
                      .+-..+|..|+..|+|.+|...+.+..+-    +.  .-...+....++|...+++.++...+.++....   +.+|.+.
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence            23348899999999999999999888763    21  126678888999999999999999999987553   3455555


Q ss_pred             HHHHHHH
Q 031461          131 LVYMELK  137 (159)
Q Consensus       131 ~~~~~~~  137 (159)
                      ..+..+.
T Consensus       180 a~i~~~~  186 (394)
T 3txn_A          180 GALDLQS  186 (394)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            4444444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.32  E-value=1.5  Score=36.54  Aligned_cols=103  Identities=10%  Similarity=-0.067  Sum_probs=73.3

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--   89 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--   89 (159)
                      .+...=+.+.+.|+.++|...|..--.........+           ..+|+.+-..+.+.|++++|...+++.....  
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-----------vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~  197 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-----------LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT  197 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-----------HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            355556678899999999999966443211111111           4568888899999999999999999987644  


Q ss_pred             CccHHHHHHHHHHHHhhCC-HHHHHHHHHHHHhc--CCCc
Q 031461           90 PLNVKALYRRSQAHLKTSE-LEKAEADIKRALTI--DPNN  126 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~--~p~~  126 (159)
                      | +...|..+-.++.+.|+ .++|...|++....  .|+.
T Consensus       198 P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~  236 (1134)
T 3spa_A          198 P-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA  236 (1134)
T ss_dssp             C-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHH
T ss_pred             C-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCCh
Confidence            5 56667777778888887 47788888777543  4543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.23  E-value=0.55  Score=36.99  Aligned_cols=60  Identities=12%  Similarity=0.070  Sum_probs=39.0

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhc--------CCccHHHHHHHH-------------HHHHhhCCHHHHHHHHHH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLEL--------EPLNVKALYRRS-------------QAHLKTSELEKAEADIKR  118 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~-------------~~~~~~~~~~~A~~~~~~  118 (159)
                      ..|.++|..+.+.++++.|..+|.++-..        ...+.+.+..++             .++..+|++++|++.|.+
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHH
Confidence            45889999999999999999999886221        123333333332             245556777777776654


Q ss_pred             H
Q 031461          119 A  119 (159)
Q Consensus       119 a  119 (159)
                      .
T Consensus       762 ~  762 (814)
T 3mkq_A          762 S  762 (814)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.94  E-value=1  Score=31.25  Aligned_cols=63  Identities=13%  Similarity=0.006  Sum_probs=51.7

Q ss_pred             hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHH
Q 031461           18 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA   95 (159)
Q Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~   95 (159)
                      ...++.|...+|+......++..|.+.               .....+-..+.-.|+|+.|..-++-+.+++|.....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da---------------~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDA---------------SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            356788999999999999999877763               335566677778999999999999999999987443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.94  E-value=0.7  Score=36.39  Aligned_cols=106  Identities=8%  Similarity=0.019  Sum_probs=60.1

Q ss_pred             HHHHhhhHHHHcccHHHHHHHHHHHHHHhcc-----cCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461           12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEF-----HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus        12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      .....|..+.+.++++.|..+|.++=+...-     ....            ...+..++......|++..|...+-+  
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~------------~~~~~~~~~~a~~~~~~~~A~~~~~~--  748 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNN------------KEGLVTLAKDAETTGKFNLAFNAYWI--  748 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC------------HHHHHHHHHHHHHTTCHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCC------------HHHHHHHHHHHHHcCchHHHHHHHHH--
Confidence            4577899999999999999999876433110     0000            11233455555666666666555422  


Q ss_pred             hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                       ..  .   +-...++|...+++++|+..   |....|....+...+..-...+
T Consensus       749 -~g--~---~~~a~~~~~~~~~~~~A~~l---A~~~~~~~~~i~~~~~~~~~~L  793 (814)
T 3mkq_A          749 -AG--D---IQGAKDLLIKSQRFSEAAFL---GSTYGLGDNEVNDIVTKWKENL  793 (814)
T ss_dssp             -HT--C---HHHHHHHHHHTTCHHHHHHH---HHHTTCCHHHHHHHHHHHHHHH
T ss_pred             -cC--C---HHHHHHHHHHcCChHHHHHH---HHHhCCChHHHHHHHHHHHHHH
Confidence             11  1   22344568889999999765   3345565522434444333333

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.91  E-value=1.2  Score=32.50  Aligned_cols=84  Identities=8%  Similarity=-0.026  Sum_probs=64.2

Q ss_pred             hhHHHHHhhhhCHHHHHHHHHHHhhcCC----------cc------------HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           63 LNNAACKLKLEDYSETSSLCTKVLELEP----------LN------------VKALYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        63 ~~~a~~~~~~~~~~~A~~~~~~al~~~~----------~~------------~~~~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      ...|......|+.+.|...+.+++.+..          .+            ..+...++.++...|++.+|+..+..++
T Consensus       119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~  198 (388)
T 2ff4_A          119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT  198 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3344444556889999999999987741          11            1244457888899999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461          121 TIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus       121 ~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      ..+|-+..++..+..+....++..+.
T Consensus       199 ~~~P~~E~~~~~lm~al~~~Gr~~~A  224 (388)
T 2ff4_A          199 FEHPYREPLWTQLITAYYLSDRQSDA  224 (388)
T ss_dssp             HHSTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999888887766665444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.86  E-value=0.81  Score=29.69  Aligned_cols=50  Identities=12%  Similarity=-0.059  Sum_probs=31.0

Q ss_pred             hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461           17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus        17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ...+.+.|+++.|.+.....     .+               ...|..+|...+..|+++-|..+|.++-
T Consensus        12 F~LAL~lg~l~~A~e~a~~l-----~~---------------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL-----ND---------------SITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH-----CC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHhcCCHHHHHHHHHHh-----CC---------------HHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            34555667777777665432     01               2337777777777777777777776653

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=93.73  E-value=0.15  Score=28.84  Aligned_cols=40  Identities=18%  Similarity=0.076  Sum_probs=32.4

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461            1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII   40 (159)
Q Consensus         1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   40 (159)
                      ||..+-+..+..+...|...-..|+|++|+.+|..+++..
T Consensus         4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l   43 (85)
T 2v6x_A            4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYL   43 (85)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3434455677778888888889999999999999999974

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=93.34  E-value=0.34  Score=29.22  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461            5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE   41 (159)
Q Consensus         5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   41 (159)
                      +-+..+..+...|...-..|+|++|+.+|..++++.-
T Consensus        13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~   49 (117)
T 2cpt_A           13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL   49 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            4566777888888888899999999999999999754

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.22  E-value=0.71  Score=29.28  Aligned_cols=71  Identities=13%  Similarity=0.086  Sum_probs=55.9

Q ss_pred             HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461           21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS  100 (159)
Q Consensus        21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (159)
                      ...++.+.|-+.|..|+..   ....            ..++...|..-...|+...|...+.+++.+.|.... .+..+
T Consensus        71 ~ei~D~d~aR~vy~~a~~~---hKkF------------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a  134 (161)
T 4h7y_A           71 KAIQEPDDARDYFQMARAN---CKKF------------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIA  134 (161)
T ss_dssp             HHHHCGGGCHHHHHHHHHH---CTTB------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHH---hHHH------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHH
Confidence            4557889999999999986   3222            677888999999999999999999999999986544 45555


Q ss_pred             HHHHhhC
Q 031461          101 QAHLKTS  107 (159)
Q Consensus       101 ~~~~~~~  107 (159)
                      ......|
T Consensus       135 ~~nl~~~  141 (161)
T 4h7y_A          135 LRNLNLQ  141 (161)
T ss_dssp             HHHHHTT
T ss_pred             HHhhhcC
Confidence            5555554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.09  E-value=0.81  Score=38.25  Aligned_cols=106  Identities=8%  Similarity=0.064  Sum_probs=72.4

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh--HHHHHH------HHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD--DEKHQA------NGLRLSCYLNNAACKLKLEDYSETSSLCTKV   85 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   85 (159)
                      +-.|..++..|++++|..+|.++-...........  .....+      .......|.-+...+...+.++.++.+...|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66899999999999999999887543221111110  011100      0112234667778888899999999999999


Q ss_pred             hhcCCcc-H----HHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461           86 LELEPLN-V----KALYRRSQAHLKTSELEKAEADIKRA  119 (159)
Q Consensus        86 l~~~~~~-~----~~~~~~~~~~~~~~~~~~A~~~~~~a  119 (159)
                      |...+.. .    ..|.++-..+..+|+|++|...+...
T Consensus       926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            9865432 2    25677888899999999997776543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.65  E-value=0.56  Score=30.43  Aligned_cols=46  Identities=15%  Similarity=0.050  Sum_probs=41.3

Q ss_pred             hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      +..|+++.|.+.++..     ++...|-.+|..-...|+++-|..+|.++-
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            7899999999998765     578899999999999999999999999874

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=92.14  E-value=1.7  Score=32.64  Aligned_cols=102  Identities=11%  Similarity=-0.034  Sum_probs=68.5

Q ss_pred             cccHHHHHHHHHHHHHHhcccCCCChHH---HHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--------C-
Q 031461           23 AGKYWRASKKYEKAAKIIEFHHSFTDDE---KHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--------P-   90 (159)
Q Consensus        23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~-   90 (159)
                      ....++|.....++....-.+...+..+   .....  ..-+..++-.+|+++++..-|...+...-...        | 
T Consensus       139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~--~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~  216 (455)
T 3t5v_B          139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRI--LLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQL  216 (455)
T ss_dssp             THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHH--HHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCH
T ss_pred             hhHHHHHHHHHHHHHHHhcccCCCcccccccccchh--HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCc
Confidence            3456777777888887754432211110   01111  12234566788999999999988886553322        2 


Q ss_pred             -ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-CCCc
Q 031461           91 -LNVKALYRRSQAHLKTSELEKAEADIKRALTI-DPNN  126 (159)
Q Consensus        91 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~  126 (159)
                       +.....|.+|..+...++|.+|...+..|+.. -|.+
T Consensus       217 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          217 DQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             cceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence             23678999999999999999999999999988 6654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.68  E-value=0.86  Score=33.76  Aligned_cols=73  Identities=7%  Similarity=0.081  Sum_probs=58.2

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcC---CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELE---PLNVKALYRRSQAHLKTSELEKAEADIKRALTI--DPNNRVVKLVY  133 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~  133 (159)
                      ++..+|..|...|+++.|...+.++....   ..-...++....++...+++..+...+.++..+  ...++.....+
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            56689999999999999999999987643   234788899999999999999999999998655  33444444333

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.31  E-value=2.9  Score=31.14  Aligned_cols=74  Identities=18%  Similarity=0.154  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL   86 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   86 (159)
                      ...++.+......++..++|..|...+.++-......+..        ..+....+...|..+...++|.+|-.+|..+.
T Consensus       174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~--------~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY--------ESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC--------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3457778888999999999999999999875433222222        24567778889999999999999999998887


Q ss_pred             hc
Q 031461           87 EL   88 (159)
Q Consensus        87 ~~   88 (159)
                      ..
T Consensus       246 ~~  247 (445)
T 4b4t_P          246 QT  247 (445)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=91.07  E-value=1.1  Score=24.50  Aligned_cols=37  Identities=14%  Similarity=0.179  Sum_probs=25.2

Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461           97 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  133 (159)
Q Consensus        97 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  133 (159)
                      ..+|+.+...|++++|...|.+|+.+.|.-......+
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~   57 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL   57 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3467777777777777777777777777655444443

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=90.08  E-value=3.1  Score=30.31  Aligned_cols=63  Identities=8%  Similarity=0.051  Sum_probs=47.4

Q ss_pred             HHHHHHHHhhc-----CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHH
Q 031461           78 TSSLCTKVLEL-----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        78 A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~  140 (159)
                      ++..|.++|..     ...+...|..+|-.+++.+++.+|+..+..+-..      ..+|.++.+.+-.|-..+
T Consensus       276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel  349 (472)
T 3re2_A          276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIANDL  349 (472)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence            66677777754     2456778888999999999999999999887544      346778877777765543

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=89.92  E-value=1  Score=25.43  Aligned_cols=34  Identities=15%  Similarity=0.108  Sum_probs=28.8

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE   41 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   41 (159)
                      ..+..+...|...-..|+|++|+.+|..+++..-
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll   47 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLL   47 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4566777888888999999999999999998743

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=89.73  E-value=0.95  Score=25.91  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   42 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~   42 (159)
                      +..+-.+-.++..+.+.|+|++||++..++..+...
T Consensus        12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e   47 (97)
T 2crb_A           12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   47 (97)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            345666777889999999999999999999987654

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=89.43  E-value=1  Score=25.82  Aligned_cols=35  Identities=14%  Similarity=0.081  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE   41 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   41 (159)
                      +..+-.+...|...-..|+|++|+.+|..+++..-
T Consensus        12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~   46 (93)
T 1wfd_A           12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDMLL   46 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            34566778888888899999999999999999754

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=88.55  E-value=3.7  Score=30.52  Aligned_cols=63  Identities=10%  Similarity=0.093  Sum_probs=47.6

Q ss_pred             HHHHHHHHhhc-----CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHH
Q 031461           78 TSSLCTKVLEL-----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        78 A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~  140 (159)
                      ++..|.++|..     ...+...|..+|-.+++.+++.+|+..+-.+-..      ..+|.++.+++-.|-..+
T Consensus       298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel  371 (550)
T 3u84_A          298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDV  371 (550)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHh
Confidence            56667777654     2456777888999999999999999999887544      346788888887776544

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.74  E-value=3  Score=24.93  Aligned_cols=70  Identities=11%  Similarity=-0.025  Sum_probs=51.2

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc-------cCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHH
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF-------HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSET   78 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A   78 (159)
                      .+-.+...|...=..|+-+.|+.+|.+.|.....       .+....+.|.....+......|++.+-..++..+..
T Consensus        21 ~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~~   97 (116)
T 2dl1_A           21 KAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEKG   97 (116)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455666677777778999999999888886532       223445788888888888888988888777765543

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=87.60  E-value=1.6  Score=23.81  Aligned_cols=30  Identities=17%  Similarity=0.231  Sum_probs=26.1

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEF   42 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~   42 (159)
                      ....|..+...|++++|+.+|-+|+...+.
T Consensus        20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q   49 (73)
T 3ax2_A           20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ   49 (73)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            456789999999999999999999998665

>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A

Probab=87.35  E-value=1.5  Score=22.31  Aligned_cols=39  Identities=18%  Similarity=0.145  Sum_probs=33.8

Q ss_pred             ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461            2 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII   40 (159)
Q Consensus         2 s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   40 (159)
                      +.++.+..++.+...+.....-.+...|++..++++++.
T Consensus        12 ~~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL   50 (53)
T 2rkl_A           12 DRASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLL   50 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence            356678889999999999999999999999999999874

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=87.25  E-value=5.8  Score=30.97  Aligned_cols=54  Identities=9%  Similarity=0.035  Sum_probs=44.4

Q ss_pred             HHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461           68 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  121 (159)
Q Consensus        68 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  121 (159)
                      ..+..|++..|..++...-..........|.+|.++..+|+-++|...|..+..
T Consensus       294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            345679999999999776664445688899999999999999999999988765

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=87.00  E-value=4.4  Score=27.32  Aligned_cols=61  Identities=15%  Similarity=0.042  Sum_probs=41.2

Q ss_pred             HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHh-hhhCHHHHHHHHHHHhhc
Q 031461           21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL-KLEDYSETSSLCTKVLEL   88 (159)
Q Consensus        21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~   88 (159)
                      |..|+-+.|...|+.|.++....-+.+       +|++..+.+|.+..|. -++++++|....++++..
T Consensus       136 ~~~g~~e~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~  197 (227)
T 2o8p_A          136 FGLCSLEDSKKIHQDAFTLLCEHPDKI-------EQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI  197 (227)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHHHCGGGG-------GGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHHHHhhCCCC-------ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            445667889999999998754321111       2334555666666655 488999999999998663

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=85.90  E-value=3.4  Score=23.83  Aligned_cols=30  Identities=17%  Similarity=0.231  Sum_probs=26.1

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEF   42 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~   42 (159)
                      ....|..+...|+++.|+.+|-+|+...+.
T Consensus        23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q   52 (95)
T 1om2_A           23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            456788999999999999999999998765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=85.89  E-value=15  Score=30.92  Aligned_cols=70  Identities=9%  Similarity=-0.009  Sum_probs=55.5

Q ss_pred             HHHHhhHHHHHhhhhCHHHHHHHHHHHhhc----CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh--cCCCcHH
Q 031461           59 LSCYLNNAACKLKLEDYSETSSLCTKVLEL----EPLNVKALYRRSQAHLKTSELEKAEADIKRALT--IDPNNRV  128 (159)
Q Consensus        59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~  128 (159)
                      ...|+.+-.++.+.|+.++|...+......    -..+...|..+-..|.+.|++++|...|.+...  +.|+...
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT  202 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS  202 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence            345788888999999999999999765432    233777888899999999999999999998864  4675543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.59  E-value=2.3  Score=32.49  Aligned_cols=73  Identities=14%  Similarity=0.066  Sum_probs=53.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+.-.=..|...+.|+.|..+.+++.  .|... .+.       ......++.+|.++.-.++|.+|..++..|++..
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~-~sn-------~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTD-VSS-------SLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT-SCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc-CCH-------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            3444455567788899999999988875  33221 111       2235567889999999999999999999999988


Q ss_pred             Ccc
Q 031461           90 PLN   92 (159)
Q Consensus        90 ~~~   92 (159)
                      |.+
T Consensus       301 p~~  303 (523)
T 4b4t_S          301 PHN  303 (523)
T ss_dssp             SCS
T ss_pred             Ccc
Confidence            754

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=85.19  E-value=2.4  Score=24.44  Aligned_cols=28  Identities=14%  Similarity=0.208  Sum_probs=16.8

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           99 RSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        99 ~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      +|+.+...|+++.|+..|.+|+.+.|.-
T Consensus        26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP   53 (95)
T 1om2_A           26 LGEELLAQGDYEKGVDHLTNAIAVCGQP   53 (95)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence            5666666666666666666666655543

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=84.68  E-value=4.5  Score=31.81  Aligned_cols=52  Identities=15%  Similarity=0.211  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461           93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  144 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  144 (159)
                      ....+..|...+..|+|.-|......++..+|+|..++..++.+..+++...
T Consensus       449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~  500 (658)
T 2cfu_A          449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA  500 (658)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence            3457778899999999999999999999999999999999999999887654

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=84.24  E-value=2.6  Score=27.85  Aligned_cols=54  Identities=6%  Similarity=-0.026  Sum_probs=37.7

Q ss_pred             HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHH-----HHHHHHHHhhCCHHH
Q 031461           58 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL-----YRRSQAHLKTSELEK  111 (159)
Q Consensus        58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~~~~~~  111 (159)
                      .....+.+|..++..++|.+|..++..|++..|......     ..+--+-.-+|+...
T Consensus        13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~   71 (203)
T 3t5x_A           13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT   71 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            355677899999999999999999999999887654332     223333345566543

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=83.77  E-value=3.8  Score=27.83  Aligned_cols=54  Identities=19%  Similarity=0.167  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHhh
Q 031461           27 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLE   87 (159)
Q Consensus        27 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~   87 (159)
                      +.|...|+.|+++....-+.+       ++++..+.+|.+..|.. ++++++|....++++.
T Consensus       147 e~a~~aY~~A~~iA~~~L~pt-------hPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd  201 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPPT-------HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD  201 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            567778888888764322221       25556666777776665 7888888887777653

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=83.13  E-value=4.2  Score=26.85  Aligned_cols=34  Identities=18%  Similarity=0.148  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      ....|.+|..+...++|.+|...+..|+..-|.+
T Consensus        14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~   47 (203)
T 3t5x_A           14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS   47 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence            6678889999999999999999999998887765

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=82.90  E-value=5.2  Score=27.59  Aligned_cols=53  Identities=21%  Similarity=0.218  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHhh
Q 031461           27 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLE   87 (159)
Q Consensus        27 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~   87 (159)
                      +.|...|+.|+++. ..-+.+       ++++..+.+|.+..|.. +++.++|...+++++.
T Consensus       173 e~a~~aY~~A~~iA-~~L~pt-------hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd  226 (260)
T 2npm_A          173 EDALKAYKDATVVA-KDLEPT-------HPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE  226 (260)
T ss_dssp             HHHHHHHHHHHHHH-TTSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            57788899999887 432222       25566667777777665 7899999888877764

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.72  E-value=5  Score=23.98  Aligned_cols=45  Identities=18%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             hCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461           73 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN  125 (159)
Q Consensus        73 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  125 (159)
                      ..+++|..+.+++|.++..        |.-.....-|.+++..+.+++.+..+
T Consensus        17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~   61 (116)
T 2dl1_A           17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSK   61 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhcccccc
Confidence            3478888888888888762        44444555566667777777777653

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=81.63  E-value=14  Score=27.49  Aligned_cols=63  Identities=10%  Similarity=0.093  Sum_probs=46.2

Q ss_pred             HHHHHHHHhhc-----CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHH
Q 031461           78 TSSLCTKVLEL-----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        78 A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~  140 (159)
                      ++..|+++|..     ...+...|..+|-.+++.++|.+|+..+..+-..      ..+|.++.+.+..+-..+
T Consensus       283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIanel  356 (489)
T 4gq4_A          283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDV  356 (489)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHHHh
Confidence            45666666653     2345677888899999999999999999887443      456788887776665444

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.97  E-value=19  Score=29.61  Aligned_cols=26  Identities=4%  Similarity=0.143  Sum_probs=22.8

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHH
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKI   39 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~   39 (159)
                      +-+|..+...|++++|..+|.+|-.-
T Consensus       844 yv~gr~~L~~ge~~~A~~~F~kAA~g  869 (950)
T 4gq2_M          844 YLKALIYLKSKEAVKAVRCFKTTSLV  869 (950)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhh
Confidence            66899999999999999999987643

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=80.74  E-value=5.5  Score=27.47  Aligned_cols=53  Identities=19%  Similarity=0.186  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHh
Q 031461           27 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVL   86 (159)
Q Consensus        27 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al   86 (159)
                      +.|...|+.|+++....-+.+       ++++..+.+|.+..|.. ++++++|....++++
T Consensus       152 e~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af  205 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPT-------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAF  205 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCC-------CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            577888999988765322221       25566667777777665 789999988887766

>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A

Probab=80.69  E-value=9.5  Score=28.40  Aligned_cols=97  Identities=13%  Similarity=0.101  Sum_probs=57.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC--C---h---HHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF--T---D---DEKHQANGLRLSCYLNNAACKLKLEDYSETSSL   81 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~---~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~   81 (159)
                      ...+..+++.+...++|.+|--++.....+...+...  +   .   ....-...+...++......+.+-+.|+.|+..
T Consensus        35 i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l  114 (436)
T 2yin_A           35 IRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISL  114 (436)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            4456677889999999999998886555554332211  0   0   000001233444566677777777788888888


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHhh
Q 031461           82 CTKVLELEPLNVKALYRRSQAHLKT  106 (159)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~~~~~~  106 (159)
                      |+.++........-+-.++.++...
T Consensus       115 ~k~L~~~yE~~~~Dy~~Ls~~~~~~  139 (436)
T 2yin_A          115 CKELAEQYEMEIFDYELLSQNLIQQ  139 (436)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888765443323344555555443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=80.66  E-value=8.3  Score=24.20  Aligned_cols=50  Identities=10%  Similarity=0.076  Sum_probs=34.9

Q ss_pred             hCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461           73 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  122 (159)
Q Consensus        73 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  122 (159)
                      |.-+.=...+...+.-.+.++..++.+|.+|.+.|+..+|-..+.+|-..
T Consensus       105 ~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A          105 GKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             TCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            33333333344434445667999999999999999999999988887643

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=80.62  E-value=5.8  Score=27.17  Aligned_cols=54  Identities=20%  Similarity=0.202  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHh
Q 031461           26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVL   86 (159)
Q Consensus        26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al   86 (159)
                      -+.|...|+.|.++....-+.+       ++++..+.+|.+..|.. ++++++|...+++++
T Consensus       147 ~~~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af  201 (248)
T 3uzd_A          147 VESSEKAYSEAHEISKEHMQPT-------HPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF  201 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3677788888888754322221       25566667777777665 788888888777765

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=80.60  E-value=5.7  Score=27.39  Aligned_cols=53  Identities=19%  Similarity=0.154  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHh
Q 031461           27 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVL   86 (159)
Q Consensus        27 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al   86 (159)
                      +.|...|+.|+++....-+.+       .+++..+.+|.+..|.. ++++++|...+++|+
T Consensus       173 e~a~~aY~~A~~iA~~~L~pT-------hPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF  226 (261)
T 3ubw_A          173 ENSLVAYKAASDIAMTELPPT-------HPIRLGLALNFSVFYYEILNSPDRACRLAKAAF  226 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            567778888887754322221       25566667777777665 788888888777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	5e-18
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-15
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-11
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	5e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	7e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 74.2 bits (181), Expect = 5e-18
 Identities = 50/158 (31%), Positives = 80/158 (50%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           MDT EK+E     K  G + F+ GKY +A  +Y K    +E  +  ++ E   +    L+
Sbjct: 6   MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 65

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L
Sbjct: 66  AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
            ++P N+  +L     + K +E+ +     +  M  K 
Sbjct: 126 EVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKF 163

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 1e-15
 Identities = 53/159 (33%), Positives = 87/159 (54%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
           M++ EK+E     K  G + F+ GKY +A  +Y+K    +E+  SF+++E  +A  LRL+
Sbjct: 4   MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 63

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
            +LN A C LKL+ +S     C K LEL+  N K L RR +AHL  ++ E A AD ++ L
Sbjct: 64  SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 123

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG 159
            + PNN+  K      + + R     + +++  M  ++ 
Sbjct: 124 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 162

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 55.4 bits (132), Expect = 6e-11
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 1/146 (0%)

Query: 1   MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-DEKHQANGLRL 59
               EK+++    K +GN  F+  +   A  KY++A         + D     +   + +
Sbjct: 8   YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 67

Query: 60  SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRA 119
           SC LN A C  K +DY +     +KVL+++  NVKALY+   A++    LE+A+ ++ +A
Sbjct: 68  SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 127

Query: 120 LTIDPNNRVVKLVYMELKDKQREYAK 145
            +++PNN  ++  Y    +K +E  K
Sbjct: 128 ASLNPNNLDIRNSYELCVNKLKEARK 153

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.3 bits (129), Expect = 2e-10
 Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 1/151 (0%)

Query: 2   DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKH-QANGLRLS 60
           D  + +   E  K+ GN  F++  +  A KKY K  + +E   +  +D    +   + LS
Sbjct: 19  DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS 78

Query: 61  CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
           C LN  ACKLK+ D+      C + LE++P N KALYRR+Q      E ++A AD+K+A 
Sbjct: 79  CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 138

Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIF 151
            I P ++ ++   +++K K +     +   +
Sbjct: 139 EIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 4e-07
 Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 12/135 (8%)

Query: 8   EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA 67
            A E + H  +         +      +A                  N L        A 
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL--------AN 313

Query: 68  CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127
            K +  +  E   L  K LE+ P    A    +    +  +L++A    K A+ I P   
Sbjct: 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373

Query: 128 VVK----LVYMELKD 138
                      E++D
Sbjct: 374 DAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 12/64 (18%), Positives = 24/64 (37%)

Query: 63  LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122
           +  A  + +  D+      C ++   EP N   L   S  H +   L+++      A+  
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 123 DPNN 126
           +P  
Sbjct: 63  NPLL 66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 15/129 (11%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
             + +  G    A   Y +A ++                      Y N A    +    +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPD---------------AYCNLANALKEKGSVA 288

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136
           E        L L P +  +L   +    +   +E+A    ++AL + P           +
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348

Query: 137 KDKQREYAK 145
             +Q +  +
Sbjct: 349 LQQQGKLQE 357

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 5e-05
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 15/146 (10%)

Query: 3   THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCY 62
               ++  E  K   N  F+A  Y  A K Y +A ++   +                  Y
Sbjct: 3   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------------IYY 47

Query: 63  LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122
            N +   L+ E Y       T+ +EL+   +K  YRR+ +++   +   A  D +  + +
Sbjct: 48  GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 107

Query: 123 DPNNRVVKLVYMELKDKQREYAKYQA 148
            P+++  K+ Y E     ++ A  +A
Sbjct: 108 KPHDKDAKMKYQECNKIVKQKAFERA 133

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 39.6 bits (92), Expect = 6e-05
 Identities = 7/67 (10%), Positives = 21/67 (31%)

Query: 70  LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 129
           L      +   L  + ++  P +        +      + E+A+  + +++ + P     
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 130 KLVYMEL 136
                 L
Sbjct: 67  ASQLRHL 73

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 7e-05
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 15/139 (10%)

Query: 11  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 70
           +  K  GN LF   KY  A+  Y +A                  N L    Y N A C L
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITR---------------NPLVAVYYTNRALCYL 49

Query: 71  KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130
           K++   +  + C + LEL+  +VKA +   Q  L+    ++A A+++RA ++    R+  
Sbjct: 50  KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109

Query: 131 LVYMELKDKQREYAKYQAE 149
              +    +  +  ++ + 
Sbjct: 110 GDDIPSALRIAKKKRWNSI 128

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 8/122 (6%)

Query: 11  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 70
            ++K  GN  ++   +  A K Y+KA ++        D         + + Y        
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNK 56

Query: 71  KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130
             E   +   +  +  E      KA  R   ++ K  + + A     ++L       V+K
Sbjct: 57  CRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116

Query: 131 LV 132
             
Sbjct: 117 KC 118

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 11/109 (10%), Positives = 25/109 (22%), Gaps = 17/109 (15%)

Query: 17  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
           G +  +        K    +   I  H                 C ++           S
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYICQH-----------------CLVHLGDIARYRNQTS 169

Query: 77  ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125
           +  S      +L P N +   + +       +         R++ +   
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	100.0
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	100.0
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.96
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.93
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.88
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.82
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.8
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.76
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.75
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.74
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.73
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.69
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.69
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.68
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.65
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.65
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.65
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.64
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.64
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.6
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.6
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.59
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.56
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.56
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.55
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.4
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.4
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.38
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.36
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.36
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.28
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.23
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.19
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	99.17
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.17
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.11
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.06
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.99
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.95
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.93
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.89
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.88
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.83
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.8
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.66
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.25
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.96
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.83
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.6
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.04
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	94.48
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	91.8
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	91.55
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	88.96
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.07
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	86.23
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	85.14
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	83.86
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	83.01
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	82.88
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	81.4

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-31  Score=173.39  Aligned_cols=158  Identities=34%  Similarity=0.578  Sum_probs=152.6

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461            1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS   80 (159)
Q Consensus         1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   80 (159)
                      ||+++++..+..+++.|+.+|..|+|++|+..|.++|.+.+..+............+...++.++|.||.++|+|++|+.
T Consensus         4 ~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~   83 (170)
T d1p5qa1           4 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE   83 (170)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccc
Confidence            79999999999999999999999999999999999999999888888888888889999999999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031461           81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM  158 (159)
Q Consensus        81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (159)
                      +++++|.++|+++.+++++|.++..+|++++|+.+|++++.++|+|+.+...+..+...+.+..+.++..|.++|+.+
T Consensus        84 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~  161 (170)
T d1p5qa1          84 SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  161 (170)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=100.00  E-value=6.3e-31  Score=171.48  Aligned_cols=158  Identities=32%  Similarity=0.577  Sum_probs=152.2

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461            1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS   80 (159)
Q Consensus         1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   80 (159)
                      ||.+|+++.++.+++.|+.+|..|+|.+|+..|.+++...+...............+...++.|+|.|+.++|+|++|+.
T Consensus         6 m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~   85 (168)
T d1kt1a1           6 MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE   85 (168)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchh
Confidence            78999999999999999999999999999999999999999888888788888889999999999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031461           81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM  158 (159)
Q Consensus        81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (159)
                      ++++++.++|.++.+++++|.++..+|++++|+.+|.+++.++|+++.+...+..+...+.+..+.+++.|++||.++
T Consensus        86 ~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~~  163 (168)
T d1kt1a1          86 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKF  163 (168)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999864

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.96  E-value=2.5e-27  Score=152.06  Aligned_cols=144  Identities=28%  Similarity=0.404  Sum_probs=131.4

Q ss_pred             CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-HHHHHHHHHHHHHHhhHHHHHhhhhCHHHHH
Q 031461            1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-DEKHQANGLRLSCYLNNAACKLKLEDYSETS   79 (159)
Q Consensus         1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~   79 (159)
                      ||.+|++..+..+++.|+.+|..|+|.+|+..|.+++.+.+....... ........+...++.|+|.||.++|++++|+
T Consensus         8 ~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al   87 (153)
T d2fbna1           8 YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI   87 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhh
Confidence            789999999999999999999999999999999999999877655544 3345556677788999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461           80 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  144 (159)
Q Consensus        80 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  144 (159)
                      .+|+++|.++|.++++++++|.++..+|++++|+.+|++++.++|+|+.+...+..+..++++.+
T Consensus        88 ~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          88 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999988776653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.4e-24  Score=141.14  Aligned_cols=147  Identities=31%  Similarity=0.490  Sum_probs=129.5

Q ss_pred             hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-CChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461            3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS-FTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL   81 (159)
Q Consensus         3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~   81 (159)
                      .+..+..++.+...|+.++..|+|..|+..|.+++...+.... ........+.+....++.++|.|+.++|+|++|+.+
T Consensus        20 ~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~   99 (169)
T d1ihga1          20 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS   99 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhh
Confidence            4566778889999999999999999999999999998654322 222333445677788899999999999999999999


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           82 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAE  149 (159)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  149 (159)
                      |+++|+++|+++.+++++|.+|..+|++++|+..|++++.++|+|+.+...+..+...+.+..+.++.
T Consensus       100 ~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~k~  167 (169)
T d1ihga1         100 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  167 (169)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999998888777653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.9e-24  Score=136.55  Aligned_cols=126  Identities=22%  Similarity=0.335  Sum_probs=117.7

Q ss_pred             ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461            2 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL   81 (159)
Q Consensus         2 s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~   81 (159)
                      +.+..++.++.++..|+.+++.|+|++|+..|.+++.++|.+               ..+|.++|.|+..+|++++|+.+
T Consensus         2 ~~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~   66 (159)
T d1a17a_           2 PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGD   66 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh---------------hhhhhhhHHHHHhccccchHHHH
Confidence            566788999999999999999999999999999999998775               45699999999999999999999


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           82 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      |+++++++|.++.+++.+|.++..+|++++|+.+|++++.++|+++.+...+..+...+++
T Consensus        67 ~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          67 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998888765544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-24  Score=132.83  Aligned_cols=115  Identities=23%  Similarity=0.224  Sum_probs=109.0

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .++.+++.|+.++..|+|++|+..|.++|..+|.+               ..+|.++|.++..+|++++|+.++.+++.+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc---------------hhhhhcccccccccccccccchhhhhHHHh
Confidence            46788999999999999999999999999998776               455999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      +|+++.+++++|.++..+|++++|+..|++++.++|+++.+...+.+++.
T Consensus        67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999988864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.9e-22  Score=132.59  Aligned_cols=102  Identities=28%  Similarity=0.416  Sum_probs=96.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ++.+.+.|+.++..|+|++|+..|.+++.+.|.+               ..+|.++|.||..+|+|++|+.+|++++.++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~---------------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            5779999999999999999999999999998776               4569999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      |+++.+|+++|.+|..+|++++|+..|++++.++|++
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999998754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.5e-20  Score=114.96  Aligned_cols=118  Identities=21%  Similarity=0.249  Sum_probs=102.3

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      +.+..+++.|+.++..|+|++|+.+|.+++++.|.+               ..++.++|.++..+|+|++|+.+|+++|.
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            357889999999999999999999999999997765               45699999999999999999999999999


Q ss_pred             cCCccH-------HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           88 LEPLNV-------KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        88 ~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      ++|.++       .+++++|.++..++++++|+.+|.+++..+|+ +.+...+..+...++
T Consensus        67 l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence            998764       57778889999999999999999999998875 566666666655443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=8.5e-19  Score=119.70  Aligned_cols=120  Identities=19%  Similarity=0.108  Sum_probs=109.2

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..+..+...|..++..|+|++|+..|.+++.+.|++               ..+++++|.++..+|++++|+.+|++++.
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC---------------HHHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            467889999999999999999999999999998876               45599999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      ++|+++.+++.+|.++..+|++++|+..|++++..+|++......+..+......
T Consensus       100 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_         100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999998877776666555443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-18  Score=106.73  Aligned_cols=113  Identities=16%  Similarity=0.157  Sum_probs=100.4

Q ss_pred             HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh---hhCHHHHHHHHHHHhhcCCc
Q 031461           15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK---LEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~~~   91 (159)
                      ..++.++..+++++|.+.|.+++...|.+               ..+++++|.|+..   .+++.+|+..+++++..+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~---------------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~   68 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVS---------------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCC---------------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC
Confidence            46778889999999999999999998876               4559999999986   55667899999999999876


Q ss_pred             c--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           92 N--VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        92 ~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      +  +.+++++|.+|..+|++++|+.+|++++.++|++..+......|..++++
T Consensus        69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            5  56899999999999999999999999999999999999999988877654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.76  E-value=9.2e-19  Score=111.93  Aligned_cols=121  Identities=17%  Similarity=0.134  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461            3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC   82 (159)
Q Consensus         3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   82 (159)
                      |-+.+..+...+..|+.++..|+|++|+..|.+++.+.+..+.....   ........+|.++|.++..+|+|++|+.++
T Consensus         2 pl~~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~---~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~   78 (156)
T d2hr2a1           2 PLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF---DHAGFDAFCHAGLAEALAGLRSFDEALHSA   78 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCC---CHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhc---ccchhHHHHHHHHHHHHHHcCccchhhHhh
Confidence            34456677888888999999999999999999999998876643211   112234567999999999999999999999


Q ss_pred             HHHhhcCCc-----------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           83 TKVLELEPL-----------NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        83 ~~al~~~~~-----------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      ++++.+.|.           ...+++++|.+|..+|++++|+.+|++++.+.|..
T Consensus        79 ~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          79 DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            999987542           35578999999999999999999999999997654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.75  E-value=1.4e-17  Score=100.72  Aligned_cols=95  Identities=12%  Similarity=0.083  Sum_probs=86.6

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      +.....|..+++.|++.+|+..|++++...|.+               ..++..+|.++..+|++++|+.++++++.++|
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p   81 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER---------------EEAWRSLGLTQAENEKDGLAIIALNHARMLDP   81 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhccccccc---------------chhhhhhhhhhhhhhhHHHhhccccccccccc
Confidence            345678999999999999999999999997765               45599999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      +++.+++.+|.+|...|++++|++.+++.+
T Consensus        82 ~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          82 KDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999875

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.1e-17  Score=108.18  Aligned_cols=122  Identities=17%  Similarity=0.133  Sum_probs=101.9

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..+-.++..|..++..|+|+.|+..|.++.   +.+               ..+++++|.+|..+|++++|+.+|+++|+
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i~---~~~---------------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPH---------------SRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS---SCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhcC---CCC---------------HHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            345678899999999999999999998632   111               34588999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc----------------HHHHHHHHHHHHHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN----------------RVVKLVYMELKDKQREYAKYQ  147 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~~~~~~~~~~~~~~~~  147 (159)
                      ++|+++.+++++|.++..+|++++|+..|++++...|.+                ..+...++.+...+++..+..
T Consensus        65 ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~  140 (192)
T d1hh8a_          65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE  140 (192)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999999999999999999999876654                245556677776666665543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.73  E-value=3.8e-17  Score=103.16  Aligned_cols=115  Identities=13%  Similarity=0.037  Sum_probs=99.5

Q ss_pred             hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh----------hCHHHHHHHHHHHh
Q 031461           17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL----------EDYSETSSLCTKVL   86 (159)
Q Consensus        17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al   86 (159)
                      +..+-+.+.|++|+..|++++.++|.++               .++.++|.++..+          +.+++|+..|++++
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~---------------~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl   68 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLDA---------------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL   68 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcch---------------HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            4456677889999999999999988874               4588999998754          55689999999999


Q ss_pred             hcCCccHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461           87 ELEPLNVKALYRRSQAHLKTSE-----------LEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +++|+++.+++++|.+|..+|+           |++|+.+|++++.++|++..++..++.+....+...+-
T Consensus        69 ~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          69 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988764           79999999999999999999999999988777665543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.4e-16  Score=110.87  Aligned_cols=131  Identities=15%  Similarity=0.057  Sum_probs=95.6

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------H------HHHHHHHHHHHHHhhHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------D------EKHQANGLRLSCYLNNAACKL   70 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------~------~~~~~~~~~~~~~~~~a~~~~   70 (159)
                      +..+...|..++..|++++|+..|.+++++.|.++..-.             +      ......+....++..+|.++.
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            455667788888888888888888888887665321100             0      000011122345777888888


Q ss_pred             hhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        71 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      ..|++++|+.++++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.++..++.+..++
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            8888888888888888888888888888888888888888888888888888888888888887776543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.3e-16  Score=110.49  Aligned_cols=119  Identities=15%  Similarity=0.013  Sum_probs=67.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHHhh
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLE   87 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~   87 (159)
                      -++.+...|.++.+.+.+++|+..|.++|.+.|.+               ..+|.++|.++..+| ++++|+.++++++.
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~---------------~~a~~~r~~~l~~l~~~~~eal~~~~~al~  106 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN---------------YTVWHFRRVLLKSLQKDLHEEMNYITAIIE  106 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCC---------------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence            34555666777777777777777777777776654               233555555555544 25555555555555


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      ++|.+..+|..+|.++..+|++++|+..+.+++.++|++..++..++.+...++.
T Consensus       107 ~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~  161 (315)
T d2h6fa1         107 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL  161 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh
Confidence            5555555555555555555555555555555555555555555555554444433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.7e-16  Score=110.28  Aligned_cols=105  Identities=16%  Similarity=0.167  Sum_probs=93.8

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP   90 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~   90 (159)
                      ..+...|..+...|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+.+|+++++++|
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------------YLLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHHHHHHHhhhhccccccccccccc---------------ccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            456778999999999999999999999987765               45589999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHH
Q 031461           91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  130 (159)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  130 (159)
                      +++.+++.+|.+|...|++++|+..|++++.++|++..+.
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            9999999999999999999999999999999999876543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.5e-15  Score=88.93  Aligned_cols=89  Identities=17%  Similarity=0.120  Sum_probs=74.5

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      ++.+++.|.++++.|+|..|+..|.+|+.+.+.++....        ....++.++|.++.++|++++|+.+++++|+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~--------~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTI--------DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSS--------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCc--------cHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            456889999999999999999999999999886543321        135678899999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhh
Q 031461           90 PLNVKALYRRSQAHLKT  106 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~  106 (159)
                      |+++.++.+++.+...+
T Consensus        77 P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          77 PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999887765543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.4e-15  Score=96.57  Aligned_cols=102  Identities=16%  Similarity=0.098  Sum_probs=91.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+..+|.+++..|+|++|+..|.+|++++|..               ..+|.++|.++..+|++++|+.+|++++...
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~---------------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~  100 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  100 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh---------------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            3457899999999999999999999999998775               4569999999999999999999999999764


Q ss_pred             Ccc----------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461           90 PLN----------------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  126 (159)
Q Consensus        90 ~~~----------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  126 (159)
                      +.+                ..+++++|.++..+|++++|...+.+++.+.|+.
T Consensus       101 ~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         101 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            432                4788999999999999999999999999998874

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-15  Score=107.48  Aligned_cols=116  Identities=11%  Similarity=-0.024  Sum_probs=105.0

Q ss_pred             HHHHHHhhhHHHHcc-cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461           10 CERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      ...+..+|.++...| ++++|+.+|.+++...|.+               ..+|.++|.++..+|++++|+.++++++.+
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~---------------~~a~~~~~~~~~~l~~~~eAl~~~~kal~~  141 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---------------YQVWHHRRVLVEWLRDPSQELEFIADILNQ  141 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh---------------hhHHHHHhHHHHhhccHHHHHHHHhhhhhh
Confidence            456788899988876 5999999999999997776               556999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      +|.+..+|..+|.++...|++++|+.+|.+++.++|.+..++..++.+...+
T Consensus       142 dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~  193 (315)
T d2h6fa1         142 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  193 (315)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999998888775543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.3e-15  Score=105.09  Aligned_cols=136  Identities=18%  Similarity=0.140  Sum_probs=79.9

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC-------------hHHH------HHHHHHHHHHHhhHHHHHh
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-------------DDEK------HQANGLRLSCYLNNAACKL   70 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------------~~~~------~~~~~~~~~~~~~~a~~~~   70 (159)
                      +..+...|..+...|++++|+..|.+++...+..+...             +...      ..+.+-...++.++|.++.
T Consensus       203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  282 (388)
T d1w3ba_         203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK  282 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56788899999999999999999999999865532110             0000      0001111233445555555


Q ss_pred             hhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        71 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      .+|++.+|+..++.++...|.++..+..+|.++...|++++|+..|++++.++|+++.++..++.+...+++.++
T Consensus       283 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  357 (388)
T d1w3ba_         283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            555555555555555555555555555555555555666666666666666666666666666665555544433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.7e-15  Score=103.03  Aligned_cols=120  Identities=9%  Similarity=-0.054  Sum_probs=100.8

Q ss_pred             cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461           23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  102 (159)
Q Consensus        23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  102 (159)
                      ..+++.|+..+.+++...+..           .+....+++++|.+|..+|++++|+.+|++++.++|+++.+++.+|.+
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~-----------~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~   80 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALT-----------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY   80 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcC-----------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchH
Confidence            456778888888877642211           122466799999999999999999999999999999999999999999


Q ss_pred             HHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461          103 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       103 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      +..+|++++|+..|++++.++|+++.++..++.+...+++..+... .|.+.
T Consensus        81 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~a  131 (259)
T d1xnfa_          81 LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD-DLLAF  131 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHH-HHHHH
Confidence            9999999999999999999999999999999999888877655432 44444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.2e-14  Score=99.49  Aligned_cols=123  Identities=11%  Similarity=0.026  Sum_probs=108.2

Q ss_pred             hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHH
Q 031461           18 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALY   97 (159)
Q Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   97 (159)
                      ......+.+.+|+..|.+++...|....             ..++..+|.++..+|++++|+.++++++..+|+++.+++
T Consensus       144 ~~~~~~~~~~~a~~~~~~al~~~p~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  210 (323)
T d1fcha_         144 GSLLSDSLFLEVKELFLAAVRLDPTSID-------------PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN  210 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTSCC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhcccc-------------cccchhhHHHHHHHHHHhhhhcccccccccccccccchh
Confidence            3456678899999999999999776443             355889999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461           98 RRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus        98 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      .+|.++...|++++|+..|++++.++|+++.++..++.+...+++..+... .|.+.
T Consensus       211 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~a  266 (323)
T d1fcha_         211 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE-HFLEA  266 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHH
T ss_pred             hhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence            999999999999999999999999999999999999999999888765533 55544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.60  E-value=3.2e-14  Score=85.63  Aligned_cols=87  Identities=16%  Similarity=0.132  Sum_probs=82.8

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      .+++|.++...|++++|+.++++++..+|+++.+++.+|.++...|++++|+.+|++++.++|++..++..++.+....+
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHH
Q 031461          142 EYAKYQA  148 (159)
Q Consensus       142 ~~~~~~~  148 (159)
                      +..+...
T Consensus        99 ~~~~A~~  105 (112)
T d1hxia_          99 NANAALA  105 (112)
T ss_dssp             HHHHHHH
T ss_pred             CHHHHHH
Confidence            8876643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.3e-14  Score=95.20  Aligned_cols=92  Identities=18%  Similarity=0.186  Sum_probs=85.1

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      +.+.|..++..|+|++|+..|+++|.++|.++.+|+++|.+|..+|++++|+.+|.+++.++|++..++..++.+...++
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 031461          142 EYAKYQAEIFGTM  154 (159)
Q Consensus       142 ~~~~~~~~~~~~~  154 (159)
                      +..+... .|.++
T Consensus        87 ~~~~A~~-~~~~a   98 (201)
T d2c2la1          87 SYDEAIA-NLQRA   98 (201)
T ss_dssp             CHHHHHH-HHHHH
T ss_pred             CHHHHHH-HHHHH
Confidence            8776643 45444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2e-14  Score=87.17  Aligned_cols=93  Identities=14%  Similarity=0.137  Sum_probs=85.4

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      +...|..++..|+|++|+.+|+++|.++|.++.+++.+|.+|..+|++++|+..|.+++.++|+++.++..++.+...++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHh
Q 031461          142 EYAKYQAEIFGTML  155 (159)
Q Consensus       142 ~~~~~~~~~~~~~~  155 (159)
                      ...+... .|.+..
T Consensus        86 ~~~~A~~-~~~~a~   98 (117)
T d1elwa_          86 RFEEAKR-TYEEGL   98 (117)
T ss_dssp             CHHHHHH-HHHHHH
T ss_pred             CHHHHHH-HHHHHH
Confidence            8876644 555543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-14  Score=84.65  Aligned_cols=80  Identities=19%  Similarity=0.110  Sum_probs=73.2

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCc-------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPL-------NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  134 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  134 (159)
                      ++++|.++...|+|.+|+.++++|+++.|.       .+.++.++|.++..+|++++|+..|++++.++|+++.+...+.
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            679999999999999999999999988653       3678999999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 031461          135 ELKDKQR  141 (159)
Q Consensus       135 ~~~~~~~  141 (159)
                      .++..+.
T Consensus        88 ~~~~~l~   94 (95)
T d1tjca_          88 YFEYIMA   94 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            8877664

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=4.5e-13  Score=86.96  Aligned_cols=129  Identities=13%  Similarity=0.041  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC-------ChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHH
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-------TDDEKHQANGLRLSCYLNNAACKLKLEDYSET   78 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A   78 (159)
                      .+..-+.+...|..+...|++++|+..|.+++.+.+.....       -...-..+.+....++.+++.++..+|++++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            34567788999999999999999999999999997643211       11334456777788899999999999999999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHH-------HhcCCCcHHHHHHHHH
Q 031461           79 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRA-------LTIDPNNRVVKLVYME  135 (159)
Q Consensus        79 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-------l~~~p~~~~~~~~~~~  135 (159)
                      +.++++++.++|.+..+|..++.++...|++.+|+..|+++       +.++|. +........
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l~~~  149 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNER  149 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC-HHHHHHHHH
Confidence            99999999999999999999999999999999999999998       556786 344333333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.6e-14  Score=89.10  Aligned_cols=87  Identities=21%  Similarity=0.154  Sum_probs=81.9

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  141 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  141 (159)
                      +...|..++..|+|++|+.+|++++.++|+++.+|+++|.++..+|++++|+..|++++.++|++..++..++.+...++
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHH
Q 031461          142 EYAKYQA  148 (159)
Q Consensus       142 ~~~~~~~  148 (159)
                      +..+...
T Consensus        93 ~~~eA~~   99 (159)
T d1a17a_          93 KFRAALR   99 (159)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            7766543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.2e-14  Score=86.62  Aligned_cols=82  Identities=13%  Similarity=0.130  Sum_probs=72.7

Q ss_pred             HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461           61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  140 (159)
Q Consensus        61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  140 (159)
                      .+.++|.+++..|+|++|+.+|+++|.++|+++.++.++|.+|..+|+|++|+.+|.+++.++|.++..+..++.+...+
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999998876666555555444


Q ss_pred             HH
Q 031461          141 RE  142 (159)
Q Consensus       141 ~~  142 (159)
                      +.
T Consensus        86 g~   87 (128)
T d1elra_          86 GN   87 (128)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.40  E-value=7.3e-12  Score=80.21  Aligned_cols=88  Identities=16%  Similarity=0.135  Sum_probs=78.8

Q ss_pred             HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461            9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL   88 (159)
Q Consensus         9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   88 (159)
                      .+..+..+|.+++..|+|.+|+..|.+++.++|.+               ..+++++|.++..+|+|++|+.+|++++.+
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~---------------~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN---------------EKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45557779999999999999999999999997765               456999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHhhCCHHH
Q 031461           89 EPLNVKALYRRSQAHLKTSELEK  111 (159)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~  111 (159)
                      +|+++.+...++.+....+.+.+
T Consensus       128 ~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         128 NPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999877776654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.40  E-value=2.7e-12  Score=82.30  Aligned_cols=91  Identities=14%  Similarity=0.061  Sum_probs=80.4

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..+..+..+|.++++.|+|++|+..|.++|++.|.+               ..+++++|.++..+|++++|+.+++++++
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---------------TKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh---------------hhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            345667788999999999999999999999997765               45699999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHhhCCHHHHH
Q 031461           88 LEPLNVKALYRRSQAHLKTSELEKAE  113 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~A~  113 (159)
                      ++|++..+...++.+........++.
T Consensus       140 l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         140 IAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988777666543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=4.6e-12  Score=87.76  Aligned_cols=130  Identities=11%  Similarity=0.011  Sum_probs=98.5

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..++.+...|+.+...|+|++|+..|.+++++.......         +....+|.++|.||..+|++++|+.++++++.
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~---------~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~  105 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE---------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence            357788899999999999999999999999986543221         12356788999999999999999999999988


Q ss_pred             cCCcc------HHHHHHHHHHHHh-hCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHHHH
Q 031461           88 LEPLN------VKALYRRSQAHLK-TSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus        88 ~~~~~------~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~  146 (159)
                      +.+..      ..++..+|.++.. .|++++|+..|++++.+.+.+      ..+...++.+...++++.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A  177 (290)
T d1qqea_         106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHH
Confidence            76544      6778888888865 699999999999998774422      23455556666666555444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.36  E-value=5.5e-12  Score=79.63  Aligned_cols=83  Identities=13%  Similarity=0.028  Sum_probs=74.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+...|..+++.|+|++|+..|.+++.+.|.+               ..+|+++|.++..+|+|++|+.+|++++.++
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~---------------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---------------VKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchh---------------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4566789999999999999999999999997765               5669999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhC
Q 031461           90 PLNVKALYRRSQAHLKTS  107 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~  107 (159)
                      |+++.+...++.+...++
T Consensus       132 P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         132 PNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999988888876554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.5e-11  Score=78.90  Aligned_cols=89  Identities=15%  Similarity=0.080  Sum_probs=79.3

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE   89 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~   89 (159)
                      +..+...|.++++.|+|++|+..+.++|.+.|.+               ..+++++|.|+..+|+|++|+.+|++++.++
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---------------EKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccc---------------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            4456678999999999999999999999998775               4569999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHhhCCHHHHH
Q 031461           90 PLNVKALYRRSQAHLKTSELEKAE  113 (159)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~A~  113 (159)
                      |+++.+...++.+....+...+..
T Consensus       127 P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         127 PNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988777666543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.2e-12  Score=94.90  Aligned_cols=81  Identities=10%  Similarity=0.015  Sum_probs=76.2

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      .++.++|.++...++|++|+.+|++|+.++|++..+++.+|.++...|++.+|+.+|.+++.+.|..+.+...+..+...
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999988887655


Q ss_pred             H
Q 031461          140 Q  140 (159)
Q Consensus       140 ~  140 (159)
                      .
T Consensus       233 ~  233 (497)
T d1ya0a1         233 A  233 (497)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=4e-11  Score=82.90  Aligned_cols=111  Identities=14%  Similarity=0.081  Sum_probs=93.3

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVL   86 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al   86 (159)
                      ..+..+...|+++...|++++|+..|.+++.+.+.....         .....++.++|.++.. +|++++|+.++++++
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~  145 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc---------hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999999999998765443         2235668889988855 799999999999999


Q ss_pred             hcCCc------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461           87 ELEPL------NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  127 (159)
Q Consensus        87 ~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  127 (159)
                      .+.+.      ...++..+|.++..+|+|++|+..|++++...|.++
T Consensus       146 ~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            77432      366789999999999999999999999999988764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=1.4e-10  Score=81.42  Aligned_cols=117  Identities=14%  Similarity=0.051  Sum_probs=100.4

Q ss_pred             HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh--CHHHHHHHHHHHhhc
Q 031461           11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE--DYSETSSLCTKVLEL   88 (159)
Q Consensus        11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~   88 (159)
                      ..+...|......|++.+|+.+|.+++...|.+               ..++..+|.++...+  ++++|+.++++++.+
T Consensus        74 ~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~---------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  138 (334)
T d1dcea1          74 QHLETEKSPEESAALVKAELGFLESCLRVNPKS---------------YGTWHHRCWLLSRLPEPNWARELELCARFLEA  138 (334)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc---------------HHHHHHhhHHHHHhccccHHHHHHHHHHHHhh
Confidence            344556677788889999999999999997766               344888888877776  489999999999999


Q ss_pred             CCccHHHH-HHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           89 EPLNVKAL-YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        89 ~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      +|.+..++ +..|.++...+.+++|+..+++++..+|++..++..++.+...+++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred             CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            99988876 5678999999999999999999999999999999999998877654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.19  E-value=5.8e-11  Score=74.21  Aligned_cols=76  Identities=14%  Similarity=0.114  Sum_probs=67.9

Q ss_pred             HHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhh----------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461           67 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT----------SELEKAEADIKRALTIDPNNRVVKLVYMEL  136 (159)
Q Consensus        67 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  136 (159)
                      ..+.+++.|++|+..+++++.++|+++.+++++|.++...          +.+++|+..|++++.++|+++.++..++.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3456788899999999999999999999999999999855          556899999999999999999999999999


Q ss_pred             HHHHHH
Q 031461          137 KDKQRE  142 (159)
Q Consensus       137 ~~~~~~  142 (159)
                      ...+++
T Consensus        85 y~~~g~   90 (145)
T d1zu2a1          85 YTSFAF   90 (145)
T ss_dssp             HHHHHH
T ss_pred             HHHccc
Confidence            877654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=3e-10  Score=68.27  Aligned_cols=83  Identities=18%  Similarity=0.145  Sum_probs=73.0

Q ss_pred             HHHhhHHHHHhhh---hCHHHHHHHHHHHhhcCCcc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461           60 SCYLNNAACKLKL---EDYSETSSLCTKVLELEPLN-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  135 (159)
Q Consensus        60 ~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  135 (159)
                      .+.++.|.+..+.   .+..+|+..++.+++.+|.. ..++|.+|..|+.+|+|++|..++.+++.++|+|..+......
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~  115 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  115 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence            3467888887754   46789999999999999876 5899999999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 031461          136 LKDKQRE  142 (159)
Q Consensus       136 ~~~~~~~  142 (159)
                      |..++.+
T Consensus       116 Ie~~~~k  122 (124)
T d2pqrb1         116 VEDKIQK  122 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            8877765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=8.2e-11  Score=82.59  Aligned_cols=104  Identities=7%  Similarity=-0.202  Sum_probs=84.1

Q ss_pred             HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHH
Q 031461           20 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRR   99 (159)
Q Consensus        20 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   99 (159)
                      +...+.+++|+..|.+++...|..+..               +.++|.++...+++.+|+..+.+++..+|.+..+++.+
T Consensus       218 ~~~l~~~~~a~~~~~~~l~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  282 (334)
T d1dcea1         218 AFFTDPNDQSAWFYHRWLLGRAEPLFR---------------CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL  282 (334)
T ss_dssp             HHHHCSSCSHHHHHHHHHHSCCCCSSS---------------CCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhcchhHHHHHHHHHHHhCcchhhH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHH
Confidence            333444455555555555554443332               67889999999999999999999999999999999999


Q ss_pred             HHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461          100 SQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  138 (159)
Q Consensus       100 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  138 (159)
                      |.++...|++++|+.+|++++.++|.+...+..++....
T Consensus       283 ~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         283 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            999999999999999999999999999888777755543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.5e-10  Score=70.20  Aligned_cols=92  Identities=10%  Similarity=0.056  Sum_probs=78.1

Q ss_pred             hhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHh---hCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHH
Q 031461           63 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK---TSELEKAEADIKRALTIDPNN--RVVKLVYMELK  137 (159)
Q Consensus        63 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~  137 (159)
                      .+++..+..++++++|...|++++.++|+++.+++++|.++..   .+++++|+..|++++..+|.+  ..++..++.+.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4677788899999999999999999999999999999999986   456667999999999999866  35788999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 031461          138 DKQREYAKYQAEIFGTML  155 (159)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~  155 (159)
                      ..++++.+... .|.++.
T Consensus        83 ~~~g~~~~A~~-~~~~aL   99 (122)
T d1nzna_          83 YRLKEYEKALK-YVRGLL   99 (122)
T ss_dssp             HHTTCHHHHHH-HHHHHH
T ss_pred             HHHhhhHHHHH-HHHHHH
Confidence            99988876643 555554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=3.6e-09  Score=73.11  Aligned_cols=106  Identities=10%  Similarity=-0.006  Sum_probs=89.4

Q ss_pred             HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461            8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus         8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      ..++...-+|..++..|++++|+.+|++++...|.++.          .....++..+|.++..+|++++|+..+++++.
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~----------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   79 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQ   79 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45666777899999999999999999999998776432          22355688999999999999999999999998


Q ss_pred             cCCc------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461           88 LEPL------NVKALYRRSQAHLKTSELEKAEADIKRALTID  123 (159)
Q Consensus        88 ~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  123 (159)
                      +.+.      ...++..++.++...|++..|...+.+++.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          80 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7543      25678889999999999999999999998763

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=1.7e-09  Score=74.78  Aligned_cols=104  Identities=15%  Similarity=0.062  Sum_probs=88.4

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh--
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE--   87 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--   87 (159)
                      +......|..+...|+++.|+..+.+++...+.++..           ....+.++|.++..+|++++|...+++++.  
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  281 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-----------LQGQWRNIARAQILLGEFEPAEIVLEELNENA  281 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-----------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4456777889999999999999999998876654433           244577899999999999999999999984  


Q ss_pred             ----cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461           88 ----LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP  124 (159)
Q Consensus        88 ----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  124 (159)
                          ..|..+.++..+|.+|...|++++|+..+++++.+.+
T Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         282 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                3466788999999999999999999999999998855

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.95  E-value=1.6e-09  Score=74.02  Aligned_cols=112  Identities=12%  Similarity=0.023  Sum_probs=86.4

Q ss_pred             hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHH
Q 031461           17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL   96 (159)
Q Consensus        17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   96 (159)
                      +..++..|++++|+..|.++++..|.+               ..++.+++.++...|++++|+..++.+++++|++..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d---------------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~   67 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKD---------------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   67 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            456788999999999999999998876               45599999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHH
Q 031461           97 YRRSQAHLKTSELEKAEADIKRALTI-DPNNRVVKLVYMELKDKQREY  143 (159)
Q Consensus        97 ~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~  143 (159)
                      ..++.++...+...++...+.....+ .|.+.........+....+..
T Consensus        68 ~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~  115 (264)
T d1zbpa1          68 SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY  115 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCH
Confidence            99999988888777766554444333 343334444444444333333

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.2e-10  Score=83.99  Aligned_cols=85  Identities=11%  Similarity=-0.066  Sum_probs=56.6

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      ..+.++|.++.+.|++++|...+.+++..+|  ..+++++|.++...|++++|+.+|.+|+.++|++..++..++.+...
T Consensus       121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~  198 (497)
T d1ya0a1         121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS  198 (497)
T ss_dssp             ----------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            3488999999999999999999999998776  46899999999999999999999999999999999999999999877


Q ss_pred             HHHHHHH
Q 031461          140 QREYAKY  146 (159)
Q Consensus       140 ~~~~~~~  146 (159)
                      .++..+.
T Consensus       199 ~~~~~~A  205 (497)
T d1ya0a1         199 KGDHLTT  205 (497)
T ss_dssp             TTCHHHH
T ss_pred             cCCHHHH
Confidence            7666544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=2.7e-08  Score=68.91  Aligned_cols=127  Identities=12%  Similarity=0.050  Sum_probs=86.3

Q ss_pred             HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461           14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV   93 (159)
Q Consensus        14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~   93 (159)
                      ...+......|+++.|...|.+++...|.+.              ..++...+.+....|.++.|...+.+++...|.+.
T Consensus       103 ~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~--------------~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~  168 (308)
T d2onda1         103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH  168 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--------------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhcCCh--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Confidence            3445556677888888888888887655432              23466667777777777888888888877777777


Q ss_pred             HHHHHHHHHH-HhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461           94 KALYRRSQAH-LKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  155 (159)
Q Consensus        94 ~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (159)
                      ..+...|... ...|+.+.|...|++++...|+++.++..........+.... -+..|.+..
T Consensus       169 ~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~-aR~~fe~ai  230 (308)
T d2onda1         169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN-TRVLFERVL  230 (308)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence            7777777654 445777777777777777777777777777766665554432 234454443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.89  E-value=3.1e-09  Score=66.81  Aligned_cols=85  Identities=15%  Similarity=0.091  Sum_probs=68.2

Q ss_pred             HhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----
Q 031461           62 YLNNAACKLKLEDYSETSSLCTKVLELEPLN------------VKALYRRSQAHLKTSELEKAEADIKRALTIDPN----  125 (159)
Q Consensus        62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----  125 (159)
                      +...|..++..|+|++|+..|+++|.+.|..            +.++.++|.+|..+|++++|+..+++++.+.|.    
T Consensus        12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            3445888899999999999999999988754            467899999999999999999999999987542    


Q ss_pred             ---c----HHHHHHHHHHHHHHHHHHHH
Q 031461          126 ---N----RVVKLVYMELKDKQREYAKY  146 (159)
Q Consensus       126 ---~----~~~~~~~~~~~~~~~~~~~~  146 (159)
                         .    ..++..++.+...+++.++.
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA  119 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEA  119 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHH
Confidence               1    23456677777777776554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.88  E-value=1.2e-08  Score=69.56  Aligned_cols=76  Identities=9%  Similarity=0.085  Sum_probs=68.6

Q ss_pred             HHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           67 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        67 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      .-.+..|++++|+..++++++.+|.++.++..+|.++...|++++|+..|++++.++|++..+...+..+......
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~   79 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA   79 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc
Confidence            3456789999999999999999999999999999999999999999999999999999999988888777654433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=5e-08  Score=62.63  Aligned_cols=96  Identities=8%  Similarity=0.000  Sum_probs=82.0

Q ss_pred             HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc----------------------HHHHHHHHHHHHhhCCHHHHHHH
Q 031461           58 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN----------------------VKALYRRSQAHLKTSELEKAEAD  115 (159)
Q Consensus        58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----------------------~~~~~~~~~~~~~~~~~~~A~~~  115 (159)
                      ......+.|......|++++|...|.+++.+.++.                      ..++..++.++..+|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            34557889999999999999999999999986532                      25788999999999999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461          116 IKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  154 (159)
Q Consensus       116 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (159)
                      +++++.++|.+..++..+..+....++..+.-+ .|.++
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~-~y~~~  127 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALG-AYRRV  127 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH-HHHHH
Confidence            999999999999999999999988877766543 44443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=9.2e-08  Score=66.13  Aligned_cols=114  Identities=12%  Similarity=-0.010  Sum_probs=91.0

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHH-hhhhCHHHHHHHHHHHhhcCCc
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK-LKLEDYSETSSLCTKVLELEPL   91 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~~~   91 (159)
                      ....+....+.|.++.|...|.+++...|.+..               ++...|... ...|+.+.|...+++++...|+
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~---------------~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~  201 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------------VYVTAALMEYYCSKDKSVAFKIFELGLKKYGD  201 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH---------------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh
Confidence            455667777889999999999999988766532               255666553 4568999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHH
Q 031461           92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR----VVKLVYMELKDKQR  141 (159)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~  141 (159)
                      ++..+...+..+...|+++.|...|++++...|.++    .++..........+
T Consensus       202 ~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G  255 (308)
T d2onda1         202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG  255 (308)
T ss_dssp             CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999877654    35555555544443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=3.5e-07  Score=54.62  Aligned_cols=79  Identities=18%  Similarity=0.091  Sum_probs=62.4

Q ss_pred             HHHHHhhhHHHHc---ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461           11 ERKKHDGNLLFRA---GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE   87 (159)
Q Consensus        11 ~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   87 (159)
                      +.-+..|..+.+.   .+...||.++..++...|..              ...+++++|..|.++|+|++|..+++.+++
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~--------------~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh--------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            4456666666654   45679999999998875543              246689999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHH
Q 031461           88 LEPLNVKALYRRSQAH  103 (159)
Q Consensus        88 ~~~~~~~~~~~~~~~~  103 (159)
                      ++|++..+....-.+-
T Consensus       102 ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1         102 HERNNKQVGALKSMVE  117 (124)
T ss_dssp             HCTTCHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHH
Confidence            9999998876554443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.25  E-value=3.6e-05  Score=51.30  Aligned_cols=97  Identities=14%  Similarity=0.107  Sum_probs=78.8

Q ss_pred             HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh----hhCHHHHHHHHHHH
Q 031461           10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKV   85 (159)
Q Consensus        10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a   85 (159)
                      ++.+..+|..++..+++.+|+.+|+++.+..  +               ..+..++|.+|..    ..++..|..++..+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~---------------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--E---------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            3567889999999999999999999998752  2               3457889999987    66899999999988


Q ss_pred             hhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCC
Q 031461           86 LELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPN  125 (159)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~  125 (159)
                      ....  ++.+...+|.++..    ..+.+.|...++++....+.
T Consensus        65 ~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          65 CDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             cccc--ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            7655  67777888887765    46888999999998876553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.96  E-value=0.00011  Score=44.13  Aligned_cols=59  Identities=8%  Similarity=0.026  Sum_probs=30.7

Q ss_pred             HhhHHHHHhh----hhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhc
Q 031461           62 YLNNAACKLK----LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTI  122 (159)
Q Consensus        62 ~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~  122 (159)
                      .+++|.+|..    ..++.+|+.+++++....  ++.+.+.+|.+|..    ..++.+|+.+|+++..+
T Consensus        58 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          58 CRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            4455555443    334555555555555432  45555555555544    34555555555555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.83  E-value=0.00031  Score=41.97  Aligned_cols=93  Identities=16%  Similarity=0.016  Sum_probs=71.5

Q ss_pred             ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 031461           24 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH  103 (159)
Q Consensus        24 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  103 (159)
                      .++++|+.+|.++.+...  +.               ...+++.  ....++++|+.+++++...  .++.+.+.+|.+|
T Consensus         7 kd~~~A~~~~~kaa~~g~--~~---------------a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y   65 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNE--MF---------------GCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTC--TT---------------HHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCC--hh---------------hhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhh
Confidence            589999999999987632  11               1445543  4467899999999999875  5789999999998


Q ss_pred             Hh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461          104 LK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  139 (159)
Q Consensus       104 ~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  139 (159)
                      ..    ..++.+|+.+|+++...  .++.+...++.+...
T Consensus        66 ~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          66 ENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             hhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            76    56899999999999875  456777777776543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.60  E-value=0.00064  Score=44.94  Aligned_cols=73  Identities=14%  Similarity=0.105  Sum_probs=59.3

Q ss_pred             HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461           60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYME  135 (159)
Q Consensus        60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  135 (159)
                      ..+.++|..+...+++.+|+.+|+++.+.  +++.+.+.+|.+|..    ..++..|..+++.+....  ++.+...++.
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~   78 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGN   78 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcccc
Confidence            34889999999999999999999999875  578999999999987    779999999999887654  3444444443


Q ss_pred             H
Q 031461          136 L  136 (159)
Q Consensus       136 ~  136 (159)
                      +
T Consensus        79 ~   79 (265)
T d1ouva_          79 L   79 (265)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.04  E-value=0.092  Score=36.05  Aligned_cols=50  Identities=12%  Similarity=-0.013  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461           93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  142 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  142 (159)
                      +.-.-.....|...|.+++.+..++.++..++.+..+...+..+..+...
T Consensus        99 ~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~  148 (336)
T d1b89a_          99 ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP  148 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh
Confidence            44445567778888999999999999998889888888888777655433

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.48  E-value=0.055  Score=28.84  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461            7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   42 (159)
Q Consensus         7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~   42 (159)
                      ++.+-.+-.++..+.+.|.|++||+++.++......
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            356677788899999999999999999999987554

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.071  Score=28.26  Aligned_cols=37  Identities=16%  Similarity=0.194  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461            4 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII   40 (159)
Q Consensus         4 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   40 (159)
                      .+.+..+-.+...|..+=..|+|.+|+.+|..+++..
T Consensus         5 ~~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l   41 (77)
T d1wr0a1           5 SPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYF   41 (77)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3466778888889999999999999999999999863

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.55  E-value=0.54  Score=25.61  Aligned_cols=36  Identities=14%  Similarity=0.084  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461            6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE   41 (159)
Q Consensus         6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   41 (159)
                      .+..+-.+...|..+-..|+|++|+.+|..++++.-
T Consensus        11 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~   46 (93)
T d1wfda_          11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLL   46 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            345677788899999999999999999999999753

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.96  E-value=0.97  Score=32.58  Aligned_cols=53  Identities=15%  Similarity=0.215  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461           93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  145 (159)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~  145 (159)
                      ....+.++...+..|+|.-|......++..+|+|..++..++.+.++++...+
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~  482 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE  482 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCc
Confidence            56678899999999999999999999999999999999999999998876543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.07  E-value=2.3  Score=29.67  Aligned_cols=54  Identities=9%  Similarity=0.035  Sum_probs=42.8

Q ss_pred             HHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461           68 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  121 (159)
Q Consensus        68 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  121 (159)
                      ..+..+++..+...++..-......+...|..|.++...|+-+.|...|..+-.
T Consensus       294 ~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            345678899888887765443334588889999999999999999999998764

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.23  E-value=1.1  Score=28.65  Aligned_cols=55  Identities=20%  Similarity=0.219  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHhh
Q 031461           26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLE   87 (159)
Q Consensus        26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~   87 (159)
                      -+.|...|+.|+.+.....+.+       ++++..+.+|.+..+.. +|+.++|...+++++.
T Consensus       142 ~~~a~~aY~~A~~~A~~~L~~t-------~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd  197 (230)
T d2o02a1         142 VDQSQQAYQEAFEISKKEMQPT-------HPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD  197 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC-------chHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3567788888887764322221       25556666666666544 7788888888777763

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=85.14  E-value=1.2  Score=28.42  Aligned_cols=57  Identities=12%  Similarity=-0.006  Sum_probs=37.7

Q ss_pred             HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHH
Q 031461           22 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKV   85 (159)
Q Consensus        22 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a   85 (159)
                      ..|.-+.|...|.+|..+.....+.+       +|++..+.+|.+..+.. +++.++|...++.|
T Consensus       135 ~~~~~~~a~~aY~~A~~ia~~~l~pt-------~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A  192 (220)
T d2o8pa1         135 GLCSLEDSKKIHQDAFTLLCEHPDKI-------EQLPLGFIQNLAYILSEKYGEKKQVFNMLNSL  192 (220)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHCGGGG-------GGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHHhcCCCC-------CcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            56777888888998888754322111       24446666677766554 77888888877666

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.86  E-value=1.9  Score=22.73  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461           94 KALYRRSQAHLKTSELEKAEADIKRAL  120 (159)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~A~~~~~~al  120 (159)
                      -.+-++++.+...|.|++|+++.+++.
T Consensus         9 H~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           9 HQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345566777777777777777665553

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.01  E-value=2.3  Score=23.13  Aligned_cols=30  Identities=17%  Similarity=0.231  Sum_probs=26.3

Q ss_pred             HHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461           13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEF   42 (159)
Q Consensus        13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~   42 (159)
                      ....|..+...|++++|+.+|-+|+...+.
T Consensus        23 eV~lGE~Ll~~G~~~~g~~h~~nAi~Vc~q   52 (95)
T d1om2a_          23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHcCC
Confidence            456788899999999999999999998765

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.88  E-value=1.5  Score=23.93  Aligned_cols=27  Identities=15%  Similarity=0.226  Sum_probs=13.4

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461           99 RSQAHLKTSELEKAEADIKRALTIDPN  125 (159)
Q Consensus        99 ~~~~~~~~~~~~~A~~~~~~al~~~p~  125 (159)
                      +|+.+...|++++|...|.+|+.+-|.
T Consensus        26 lGE~Ll~~G~~~~g~~h~~nAi~Vc~q   52 (95)
T d1om2a_          26 LGEELLAQGDYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHcCC
Confidence            444445555555555555555544443

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=81.40  E-value=2.5  Score=27.11  Aligned_cols=55  Identities=18%  Similarity=0.182  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHhh
Q 031461           26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLE   87 (159)
Q Consensus        26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~   87 (159)
                      -+.|...|+.|+.+.....+.+       ++++..+.+|.+..+.. +|+.++|...+++++.
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt-------~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd  202 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPT-------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  202 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC-------cHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567777888877654322211       25566667777777654 5788888887777753