Citrus Sinensis ID: 031465

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSLQRTILLARISPSPWMKSRNQQQICDVTDYNRQVLLV
Secondary Structure (PSIPRED)
cccccHHHcccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccccccccccccEEEEEEcccccccccccccccccccccccEEEcccccccEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccEcEccHHHHHHHHHHHHHHHHHHcccEccccccccHHHHHHHcccEcccHHHHHHcHcccEEEEEccEcHHHHccccccHHHHcccEEEccccccEEEEc
Coil and Loop (DISEMBL)
mtlqsslcgsgvstfictprpiiarprpvtqiraqvepseKSVEIMRKFSEQYARrsdtffcvdkSVTSVVIKGLAdhkdslgaplcpcrhyddKAAEAQqgfwncpcvpmrernatacSFSLQRTILLarispspwmksrnqqqicdvtdynrqvllv
Flexible Loop (DISEMBL)
mtlqsslcgsgvstfictprpiiarprpvtqiraqvepseksveIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSLQRTILLArispspwmksrnqqqicdvtdYNRQVLLV
Low Complexity Region (SEG)
MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSLQRTILLARISPSPWMKSRNQQQICDVTDYNRQVLLV
Disordered region (IsUnstruct)
*******CGSGVSTFICTPRPIIARPR*V*******************FSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSLQRTILLARISPSPWMK***QQQICDVTDYNRQ****
Disordered Region (DISOPRED)
*******CGSGVST*********************************KFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSLQRTILL****************ICDVTDYNRQVLLV
Disordered Region (DISEMBL)
********GSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSLQRTILLARISPSPWMKSRNQQQICDVTDYNRQVLLV
Disordered Region (DISPRO)
*TLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSLQRTILLARISPSPWMKSRNQQQICDVTDYNRQVLLV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSLQRTILLARISPSPWMKSRNQQQICDVTDYNRQVLLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
O49856	144	Ferredoxin-thioredoxin re	yes	no	0.823	0.909	0.618	1e-41
Q9SJ89	146	Ferredoxin-thioredoxin re	yes	no	0.748	0.815	0.688	2e-41
P41349	148	Ferredoxin-thioredoxin re	N/A	no	0.610	0.655	0.783	3e-40
P41348	144	Ferredoxin-thioredoxin re	N/A	no	0.628	0.694	0.732	6e-40
P41347	152	Ferredoxin-thioredoxin re	N/A	no	0.622	0.651	0.701	3e-37
Q6K471	146	Ferredoxin-thioredoxin re	yes	no	0.522	0.568	0.819	3e-36
P51386	118	Ferredoxin-thioredoxin re	N/A	no	0.591	0.796	0.551	1e-28
Q1XDA1	116	Ferredoxin-thioredoxin re	N/A	no	0.522	0.715	0.650	1e-28
O78461	102	Ferredoxin-thioredoxin re	yes	no	0.566	0.882	0.555	6e-27
Q9TM25	111	Ferredoxin-thioredoxin re	N/A	no	0.528	0.756	0.571	4e-26

>sp|O49856|FTRC_SOYBN Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max GN=FTRC PE=2 SV=1

 Score =  168 bits (426), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/144 (61%), Positives = 99/144 (68%), Gaps = 13/144 (9%)

Query: 1   MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF 60
           MT Q+S     V + + TP     R R    +RAQ EPS+KSVEIMRKFSEQYAR+S T+
Sbjct: 1   MTTQASTFAVAVPS-VATP---FRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTY 56

Query: 61  FCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACS 120
           FCVDK VTSVVIKGLADHKD+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRER    C 
Sbjct: 57  FCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCM 116

Query: 121 FSL---------QRTILLARISPS 135
             L         ++TI L  I  S
Sbjct: 117 LFLTPDNDFAGNEQTITLDEIKES 140

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.
Glycine max (taxid: 3847)
EC: 1EC: .EC: 8EC: .EC: 7EC: .EC: 2

>sp|Q9SJ89|FTRC_ARATH Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Arabidopsis thaliana GN=FTRC PE=2 SV=1

 Score =  167 bits (424), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 90/125 (72%), Gaps = 6/125 (4%)

Query: 1   MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
           M LQ+  C  G   S    TPR    R      IRA+ EPSEKSVEIMRKFSEQYARRS 
Sbjct: 1   MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56

Query: 59  TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATA 118
           T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE  QGFWNCPCVPMRER    
Sbjct: 57  TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRERKECH 116

Query: 119 CSFSL 123
           C   L
Sbjct: 117 CMLFL 121

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|P41349|FTRC2_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea PE=2 SV=1

 Score =  164 bits (414), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/97 (78%), Positives = 83/97 (85%)

Query: 27  RPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPL 86
           RP   I ++VEPS+KSVEIMRKFSEQYAR+S T+FCVDK VTSVVIKGLA+HKDSLGAPL
Sbjct: 27  RPQCVILSKVEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLAEHKDSLGAPL 86

Query: 87  CPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSL 123
           CPCR+YDDKAAEA QGFWNCPCVPMRER    C   L
Sbjct: 87  CPCRYYDDKAAEATQGFWNCPCVPMRERKECHCMLFL 123

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|P41348|FTRC1_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea GN=FTRC PE=1 SV=2

 Score =  162 bits (411), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 87/101 (86%), Gaps = 1/101 (0%)

Query: 24  ARPRPVTQ-IRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSL 82
           A PR  ++ IRAQ +PS+KS+E+MRKFSEQ+ R+SDT+FCVDKSVT+VVIKGLADH+D+L
Sbjct: 19  ASPRRFSRVIRAQADPSDKSMEVMRKFSEQFCRKSDTYFCVDKSVTAVVIKGLADHRDTL 78

Query: 83  GAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSL 123
           GAPLCPCRHYDDK AEA+QGFWNCPCVPMRER    C   L
Sbjct: 79  GAPLCPCRHYDDKEAEAKQGFWNCPCVPMRERKECHCMLFL 119

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|P41347|FTRC_MAIZE Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Zea mays GN=FTRC PE=2 SV=1

 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/104 (70%), Positives = 82/104 (78%), Gaps = 5/104 (4%)

Query: 24  ARPRPVTQIRAQVEPSE----KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHK 79
            RPR    +RAQ   ++    KSVE+MRKFSEQYARRS+TFFC DK+VT+VVIKGLADH+
Sbjct: 25  GRPRRCA-VRAQAAGADASNDKSVEVMRKFSEQYARRSNTFFCADKTVTAVVIKGLADHR 83

Query: 80  DSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSL 123
           D+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRER    C   L
Sbjct: 84  DTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFL 127

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|Q6K471|FTRC_ORYSJ Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0249900 PE=2 SV=1

 Score =  150 bits (379), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 72/83 (86%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           KS+EIMRKFSEQYARRS+TFFC +KSVT+VVIKGLADHKD LGAPLCPCRHYDDKAAE  
Sbjct: 39  KSLEIMRKFSEQYARRSNTFFCSEKSVTAVVIKGLADHKDQLGAPLCPCRHYDDKAAEVA 98

Query: 101 QGFWNCPCVPMRERNATACSFSL 123
           QGFWNCPCVPMRER    C   L
Sbjct: 99  QGFWNCPCVPMRERKECHCMLFL 121

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|P51386|FTRC_PORPU Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra purpurea GN=ftrB PE=3 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 70/107 (65%), Gaps = 13/107 (12%)

Query: 42  SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQ 101
           ++E MRKFSE YA+R+ TFFC D SVT+VVI+GLA HKD  GAPLCPCRHY+DK AE   
Sbjct: 12  NLEAMRKFSETYAKRTGTFFCADNSVTAVVIEGLARHKDKYGAPLCPCRHYEDKKAEISA 71

Query: 102 GFWNCPCVPMRERNATACSFSL-------------QRTILLARISPS 135
            +WNCPCVPMRER    C   L              +T LL +I+ S
Sbjct: 72  TYWNCPCVPMRERKECHCMLFLTPDNEFTSDLQEIDKTTLLEKIASS 118

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Porphyra purpurea (taxid: 2787)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|Q1XDA1|FTRC_PORYE Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra yezoensis GN=ftrB PE=3 SV=2

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 64/83 (77%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           +++E MRKFSE YA+R+ TFFC+D SVT+VVI+GLA HKD  GAPLCPCRHY+DK AE  
Sbjct: 11  ENLEAMRKFSETYAKRTGTFFCIDSSVTAVVIEGLARHKDQYGAPLCPCRHYEDKKAEIS 70

Query: 101 QGFWNCPCVPMRERNATACSFSL 123
             +WNCPCVPMRER    C   L
Sbjct: 71  ATYWNCPCVPMRERRECHCMLFL 93

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Porphyra yezoensis (taxid: 2788)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|O78461|FTRC_GUITH Ferredoxin-thioredoxin reductase, catalytic chain OS=Guillardia theta GN=ftrB PE=3 SV=1

 Score =  119 bits (299), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 63/90 (70%)

Query: 36  VEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDK 95
           +E    S   M+KF+E YA+R++TFFC D S+T +V++GLA HKD  GAPLCPCRHYDDK
Sbjct: 2   IESYSDSFVAMKKFAETYAKRTNTFFCNDLSITQIVLEGLAKHKDEYGAPLCPCRHYDDK 61

Query: 96  AAEAQQGFWNCPCVPMRERNATACSFSLQR 125
           + E    +WNCPCVPMRER    C   L +
Sbjct: 62  SEEVASTYWNCPCVPMRERKECHCMLFLTK 91

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Guillardia theta (taxid: 55529)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|Q9TM25|FTRC_CYACA Ferredoxin-thioredoxin reductase, catalytic chain OS=Cyanidium caldarium GN=ftrB PE=3 SV=1

 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 63/84 (75%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           K++E + KF+E YA+ S T+FC+D+S+T++VI+GLA HKD  GAPLCPCRHY++K  E  
Sbjct: 6   KNLESLHKFAEAYAKLSRTYFCIDQSITALVIEGLARHKDDYGAPLCPCRHYENKKTEVL 65

Query: 101 QGFWNCPCVPMRERNATACSFSLQ 124
             +WNCPCVPMRER    C   LQ
Sbjct: 66  AAYWNCPCVPMRERKECHCMLFLQ 89

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Cyanidium caldarium (taxid: 2771)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
225452570	145	PREDICTED: ferredoxin-thioredoxin reduct	0.748	0.820	0.733	5e-44
147852954	160	hypothetical protein VITISV_006145 [Viti	0.748	0.743	0.733	5e-44
14275859	148	ferredoxin-thioredoxin-reductase catalyt	0.742	0.797	0.696	2e-42
116779666	150	unknown [Picea sitchensis] gi|116785080|	0.754	0.8	0.677	4e-42
388494172	144	unknown [Lotus japonicus]	0.635	0.701	0.801	9e-42
346467615	155	hypothetical protein [Amblyomma maculatu	0.748	0.767	0.674	1e-40
407971016	144	ferredoxin-thioredoxin reductase catalyt	0.823	0.909	0.618	6e-40
15224046	146	Ferredoxin-thioredoxin reductase catalyt	0.748	0.815	0.688	1e-39
297831548	146	ferredoxin thioredoxin reductase catalyt	0.748	0.815	0.688	1e-39
449492658	187	PREDICTED: ferredoxin-thioredoxin reduct	0.578	0.491	0.804	4e-39

>gi|225452570|ref|XP_002280653.1| PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Vitis vinifera] gi|296087725|emb|CBI34981.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 91/124 (73%), Positives = 100/124 (80%), Gaps = 5/124 (4%)

Query: 1   MTLQ-SSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDT 59
           M+LQ SS    G+S+F+  PR    R R V +IRA+VEPS+KSVEIMRKFSEQYAR+S T
Sbjct: 1   MSLQASSSYAFGISSFVSPPR----RVRHVPEIRAKVEPSDKSVEIMRKFSEQYARKSGT 56

Query: 60  FFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATAC 119
           +FCVDK VTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEA QGFWNCPCVPMRER    C
Sbjct: 57  YFCVDKGVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAGQGFWNCPCVPMRERKECHC 116

Query: 120 SFSL 123
              L
Sbjct: 117 MLFL 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852954|emb|CAN81270.1| hypothetical protein VITISV_006145 [Vitis vinifera]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 91/124 (73%), Positives = 100/124 (80%), Gaps = 5/124 (4%)

Query: 1   MTLQ-SSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDT 59
           M+LQ SS    G+S+F+  PR    R R V +IRA+VEPS+KSVEIMRKFSEQYAR+S T
Sbjct: 1   MSLQASSSYAFGISSFVSPPR----RVRHVPEIRAKVEPSDKSVEIMRKFSEQYARKSGT 56

Query: 60  FFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATAC 119
           +FCVDK VTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEA QGFWNCPCVPMRER    C
Sbjct: 57  YFCVDKGVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAGQGFWNCPCVPMRERKECHC 116

Query: 120 SFSL 123
              L
Sbjct: 117 MLFL 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14275859|emb|CAC39620.1| ferredoxin-thioredoxin-reductase catalytic subunit B [Solanum tuberosum]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/125 (69%), Positives = 98/125 (78%), Gaps = 7/125 (5%)

Query: 2   TLQSSL---CGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
           TLQ+S     G G+S+F   P+P   R   V    A++EPSEKSVEIMRKFSEQYARRS+
Sbjct: 3   TLQASTSYSVGFGISSFATRPKPSTHRCLTV----AKMEPSEKSVEIMRKFSEQYARRSE 58

Query: 59  TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATA 118
           T+FC+DK VTSVVIKGLA+HKD+LGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER    
Sbjct: 59  TYFCMDKGVTSVVIKGLAEHKDTLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECH 118

Query: 119 CSFSL 123
           C   L
Sbjct: 119 CMLFL 123

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779666|gb|ABK21385.1| unknown [Picea sitchensis] gi|116785080|gb|ABK23584.1| unknown [Picea sitchensis]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 82/121 (67%), Positives = 95/121 (78%), Gaps = 1/121 (0%)

Query: 3   LQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFC 62
           + +S+   GVS+   +    I   +   Q+RA+VEPS KSVEIMRKFSEQYARRSDT+FC
Sbjct: 6   INTSISNLGVSSLKSSANARI-ESKYSMQVRAKVEPSNKSVEIMRKFSEQYARRSDTYFC 64

Query: 63  VDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFS 122
           VDK+VTSVVIKGLA+HKD+LGAPLCPCRHYDDK AEA+QGFWNCPCVPMRER    C   
Sbjct: 65  VDKAVTSVVIKGLAEHKDTLGAPLCPCRHYDDKVAEAEQGFWNCPCVPMRERKECHCMLF 124

Query: 123 L 123
           L
Sbjct: 125 L 125

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494172|gb|AFK35152.1| unknown [Lotus japonicus]

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 81/101 (80%), Positives = 87/101 (86%)

Query: 23  IARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSL 82
           + R R +  +RAQVEPSEKS+EIMRKFSEQYAR+S T+FCVDKSVTSVVIKGLADHKDSL
Sbjct: 19  LRRHRNLHVVRAQVEPSEKSIEIMRKFSEQYARKSGTYFCVDKSVTSVVIKGLADHKDSL 78

Query: 83  GAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACSFSL 123
           GAPLCPCRHYDDK AEAQQGFWNCPCVPMRER    C   L
Sbjct: 79  GAPLCPCRHYDDKPAEAQQGFWNCPCVPMRERKECHCMLFL 119

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346467615|gb|AEO33652.1| hypothetical protein [Amblyomma maculatum]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 95/123 (77%), Gaps = 4/123 (3%)

Query: 1   MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF 60
           M++QSS  G G+     +P P   R R  +++ A+ EPS+KSVE+MRKFSEQYARRS T+
Sbjct: 21  MSIQSSFSGVGLPCL--SPAPTTRRSR--SRVFAKAEPSDKSVELMRKFSEQYARRSGTY 76

Query: 61  FCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACS 120
           FCVDK VTSVVIKGLADHKDS+GAPLCPCRHYDDKAAE  QGFWNCPCVPMRER    C 
Sbjct: 77  FCVDKGVTSVVIKGLADHKDSVGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRERKECHCM 136

Query: 121 FSL 123
             L
Sbjct: 137 LFL 139

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|407971016|ref|NP_001236326.1| ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Glycine max] gi|3913670|sp|O49856.1|FTRC_SOYBN RecName: Full=Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic; Short=FTR-C; Flags: Precursor gi|2765445|emb|CAA75356.1| ferredoxin thioredoxin reductase precursor [Glycine max]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 89/144 (61%), Positives = 99/144 (68%), Gaps = 13/144 (9%)

Query: 1   MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF 60
           MT Q+S     V + + TP     R R    +RAQ EPS+KSVEIMRKFSEQYAR+S T+
Sbjct: 1   MTTQASTFAVAVPS-VATP---FRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTY 56

Query: 61  FCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATACS 120
           FCVDK VTSVVIKGLADHKD+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRER    C 
Sbjct: 57  FCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCM 116

Query: 121 FSL---------QRTILLARISPS 135
             L         ++TI L  I  S
Sbjct: 117 LFLTPDNDFAGNEQTITLDEIKES 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224046|ref|NP_178547.1| Ferredoxin-thioredoxin reductase catalytic chain [Arabidopsis thaliana] gi|75206241|sp|Q9SJ89.1|FTRC_ARATH RecName: Full=Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic; Short=FTR-C; Flags: Precursor gi|4544427|gb|AAD22336.1| putative ferredoxin-thioredoxin reductase [Arabidopsis thaliana] gi|17380642|gb|AAL36151.1| putative ferredoxin-thioredoxin reductase [Arabidopsis thaliana] gi|21436083|gb|AAM51242.1| putative ferredoxin-thioredoxin reductase [Arabidopsis thaliana] gi|21593637|gb|AAM65604.1| putative ferredoxin-thioredoxin reductase [Arabidopsis thaliana] gi|330250764|gb|AEC05858.1| Ferredoxin-thioredoxin reductase catalytic chain [Arabidopsis thaliana]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 90/125 (72%), Gaps = 6/125 (4%)

Query: 1   MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
           M LQ+  C  G   S    TPR    R      IRA+ EPSEKSVEIMRKFSEQYARRS 
Sbjct: 1   MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56

Query: 59  TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATA 118
           T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE  QGFWNCPCVPMRER    
Sbjct: 57  TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRERKECH 116

Query: 119 CSFSL 123
           C   L
Sbjct: 117 CMLFL 121

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831548|ref|XP_002883656.1| ferredoxin thioredoxin reductase catalytic beta chain family protein [Arabidopsis lyrata subsp. lyrata] gi|297329496|gb|EFH59915.1| ferredoxin thioredoxin reductase catalytic beta chain family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 90/125 (72%), Gaps = 6/125 (4%)

Query: 1   MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
           M LQ+  C  G   S    TPR    R      IRA+ EPSEKSVEIMRKFSEQYARRS 
Sbjct: 1   MNLQAVSCSFGFVSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56

Query: 59  TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATA 118
           T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE  QGFWNCPCVPMRER    
Sbjct: 57  TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRERKECH 116

Query: 119 CSFSL 123
           C   L
Sbjct: 117 CMLFL 121

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492658|ref|XP_004159064.1| PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucumis sativus]

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 79/92 (85%)

Query: 32  IRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRH 91
           +RAQ EPSEKSVEIMRKFSEQYAR+S T+FCVDK VT+VVIKGLADHKD+LGAPLCPCRH
Sbjct: 71  VRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVDKGVTAVVIKGLADHKDTLGAPLCPCRH 130

Query: 92  YDDKAAEAQQGFWNCPCVPMRERNATACSFSL 123
           YDDK AE  QGFWNCPCVPMRER    C   L
Sbjct: 131 YDDKPAEVAQGFWNCPCVPMRERKECHCMLFL 162

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2049228	146	AT2G04700 [Arabidopsis thalian	0.748	0.815	0.688	1.8e-39
UNIPROTKB|Q55389	118	ftrC "Ferredoxin-thioredoxin r	0.534	0.720	0.611	2.8e-27

TAIR|locus:2049228 AT2G04700 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 86/125 (68%), Positives = 90/125 (72%)

Query:     1 MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
             M LQ+  C  G   S    TPR    R      IRA+ EPSEKSVEIMRKFSEQYARRS 
Sbjct:     1 MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56

Query:    59 TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATA 118
             T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE  QGFWNCPCVPMRER    
Sbjct:    57 TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRERKECH 116

Query:   119 CSFSL 123
             C   L
Sbjct:   117 CMLFL 121

GO:0008937 "ferredoxin-NAD(P) reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030385 "ferredoxin:thioredoxin reductase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q55389 ftrC "Ferredoxin-thioredoxin reductase, catalytic chain" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 52/85 (61%), Positives = 66/85 (77%)

Query:    39 SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
             + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct:     8 NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 67

Query:    99 AQQGFWNCPCVPMRERNATACSFSL 123
              +  FWNCPCVPMRER    C   L
Sbjct:    68 VKNTFWNCPCVPMRERKECHCMLFL 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.133   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      159       159   0.00091  106 3  11 22  0.45    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  152 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.40u 0.14s 15.54t   Elapsed:  00:00:01
  Total cpu time:  15.40u 0.14s 15.54t   Elapsed:  00:00:01
  Start:  Sat May 11 03:08:12 2013   End:  Sat May 11 03:08:13 2013

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJ89	FTRC_ARATH	1, ., 8, ., 7, ., 2	0.688	0.7484	0.8150	yes	no
Q6K471	FTRC_ORYSJ	1, ., 8, ., 7, ., 2	0.8192	0.5220	0.5684	yes	no
O49856	FTRC_SOYBN	1, ., 8, ., 7, ., 2	0.6180	0.8238	0.9097	yes	no
P41348	FTRC1_SPIOL	1, ., 8, ., 7, ., 2	0.7326	0.6289	0.6944	N/A	no
P41349	FTRC2_SPIOL	1, ., 8, ., 7, ., 2	0.7835	0.6100	0.6554	N/A	no
P41347	FTRC_MAIZE	1, ., 8, ., 7, ., 2	0.7019	0.6226	0.6513	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.8.7.2	0.946
3rd Layer	1.8.7	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020811001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (145 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00005318001	SubName- Full=Chromosome undetermined scaffold_1017, whole genome shotgun sequence; (554 aa)	•						•		0.814
	GSVIVG00002047001	SubName- Full=Chromosome undetermined scaffold_125, whole genome shotgun sequence; (321 aa)	•						•		0.772
	GSVIVG00002625001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (149 aa)			•	•			•		0.765
	GSVIVG00017304001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (463 aa)	•						•		0.761
	GSVIVG00024152001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (462 aa)				•			•		0.540
	GSVIVG00026129001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (273 aa)			•	•					0.515
	GSVIVG00014701001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (331 aa)			•	•					0.472
	GSVIVG00006255001	SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (442 aa)			•						0.466
	GSVIVG00013467001	SubName- Full=Chromosome undetermined scaffold_484, whole genome shotgun sequence; (332 aa)			•	•					0.456
	GSVIVG00026973001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (166 aa)			•	•					0.452

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
CHL00165	116	CHL00165, ftrB, ferredoxin thioreductase subunit b	1e-43
pfam02943	105	pfam02943, FeThRed_B, Ferredoxin thioredoxin reduc	4e-43
COG4802	110	COG4802, FtrB, Ferredoxin-thioredoxin reductase, c	2e-26
cd07768	465	cd07768, FGGY_RBK_like, Ribulokinase-like carbohyd	0.002

>gnl|CDD|214382 CHL00165, ftrB, ferredoxin thioreductase subunit beta; Validated

 Score =  139 bits (353), Expect = 1e-43
 Identities = 52/84 (61%), Positives = 63/84 (75%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           +S+E MRKF+E YA+R++TFFC D S+T+VVI+GLA HKD  GAPLCPCRHY+DK  E  
Sbjct: 11  ESLEAMRKFAETYAKRTNTFFCSDLSITAVVIEGLARHKDEYGAPLCPCRHYEDKKVEVS 70

Query: 101 QGFWNCPCVPMRERNATACSFSLQ 124
             +WNCPCVPMRER    C   L 
Sbjct: 71  AAYWNCPCVPMRERKECHCMLFLT 94

Length = 116

>gnl|CDD|145870 pfam02943, FeThRed_B, Ferredoxin thioredoxin reductase catalytic beta chain

 Score =  137 bits (348), Expect = 4e-43
 Identities = 51/79 (64%), Positives = 59/79 (74%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           KS+E MRKF+E+YA+RS T+FC D  VT+VVI+GLA HKD  G PLCPCRHY+DK AE  
Sbjct: 1   KSLEKMRKFAEKYAKRSGTYFCPDPEVTAVVIEGLARHKDRYGKPLCPCRHYEDKEAEVS 60

Query: 101 QGFWNCPCVPMRERNATAC 119
              W CPCVPMRER    C
Sbjct: 61  ADDWICPCVPMRERKECHC 79

Length = 105

>gnl|CDD|227139 COG4802, FtrB, Ferredoxin-thioredoxin reductase, catalytic subunit [Energy production and conversion]

 Score = 95.7 bits (238), Expect = 2e-26
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 39  SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
           S++ +  M +F+EQYA +S      D+  T+ V++GLA +K+  G P CPCR    K  E
Sbjct: 2   SDEELNKMYRFTEQYAEKSGYRLNPDREFTAEVLRGLASNKERYGYPSCPCRLVTGKEEE 61

Query: 99  AQQGFWNCPCVP----MRERNATACSFSLQRTILLARISPSPWMKSR 141
            +     CPCV     +RE     C   L      A+  P    + R
Sbjct: 62  DKD--IVCPCVYRDDDIREYGECYCGLYLSPEKDEAQSIPERRAEVR 106

Length = 110

>gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 12/94 (12%)

Query: 62  CVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERN---ATA 118
            VD +  +VV        D+ G PL P   +DD  A  Q    N    P          +
Sbjct: 76  GVDATSCTVVPL------DAEGQPLTPALLWDDHRAADQANAINEVGGPALWDYGGKIVS 129

Query: 119 CSFSLQRTILLARISPSPWMKSRNQQQICDVTDY 152
             + L + + L + +P  W          +  D+
Sbjct: 130 PEWMLPKVLWLLQEAPDTW---NRADHFLEAPDW 160

This subfamily is composed of ribulokinases (RBKs) and similar proteins from bacteria and eukaryota. RBKs catalyze the MgATP-dependent phosphorylation of a variety of sugar substrates including L- and/or D-ribulose. Members of this subfamily contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 465

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
CHL00165	116	ftrB ferredoxin thioreductase subunit beta; Valida	100.0
PF02943	108	FeThRed_B: Ferredoxin thioredoxin reductase cataly	100.0
COG4802	110	FtrB Ferredoxin-thioredoxin reductase, catalytic s	100.0
PF05511	99	ATP-synt_F6: Mitochondrial ATP synthase coupling f	86.88

>CHL00165 ftrB ferredoxin thioreductase subunit beta; Validated

Probab=100.00  E-value=7e-46  Score=284.56  Aligned_cols=99  Identities=55%  Similarity=1.034  Sum_probs=95.3

Q ss_pred             cCCcCHHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCCCCCCccccchhhhhhCCceeecCcccccC
Q 031465           35 QVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER  114 (159)
Q Consensus        35 ~~~~see~le~~~~f~ekyAek~Gy~lNPD~evt~~Vi~GLa~NK~rYG~~~CPCRl~~DkE~ev~D~diICPCvy~~E~  114 (159)
                      +...+++++|+|++|+++||+++||+||||+++|+.|++|||+||++||+||||||+++++++|+++++|||||++|+|+
T Consensus         5 ~~~~~~~~~e~m~~f~ekya~~~G~~fnpD~~vt~~Vi~GLa~nK~~yG~p~CPCR~~~~k~~e~~~~~~iCPCv~m~e~   84 (116)
T CHL00165          5 NEKSKPESLEAMRKFAETYAKRTNTFFCSDLSITAVVIEGLARHKDEYGAPLCPCRHYEDKKVEVSAAYWNCPCVPMRER   84 (116)
T ss_pred             ccccchhhHHHHHHHHHHHHHHhCCeeCCCHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcHHHhhcCCeecCCHhHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             ceeeEeeeeccchhhccCC
Q 031465          115 NATACSFSLQRTILLARIS  133 (159)
Q Consensus       115 G~CHC~LFvs~e~~~a~~~  133 (159)
                      |+||||||+++|++|||.+
T Consensus        85 g~CHC~LF~t~e~~~~~~~  103 (116)
T CHL00165         85 KECHCMLFLTPDNEFASQS  103 (116)
T ss_pred             CCceEeeeecCCccccCcc
Confidence            9999999999999999964

>PF02943 FeThRed_B: Ferredoxin thioredoxin reductase catalytic beta chain; InterPro: IPR004209 Ferredoxin thioredoxin reductase is a [4FE-4S] protein present in organisms performing oxygenic photosynthesis, and plays an important role in the ferredoxin/thioredoxin regulatory chain

Probab=100.00  E-value=1e-42  Score=263.52  Aligned_cols=94  Identities=35%  Similarity=0.556  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCCCCCCccccchhhhhhCCceeecCccc----ccCce
Q 031465           41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPM----RERNA  116 (159)
Q Consensus        41 e~le~~~~f~ekyAek~Gy~lNPD~evt~~Vi~GLa~NK~rYG~~~CPCRl~~DkE~ev~D~diICPCvy~----~E~G~  116 (159)
                      +++++|++|+++||+++||+||||+++|+.|++||++||++||++|||||++++++++++|++|||||+++    .++|+
T Consensus         1 ~~le~~~~~~~~~a~~~G~~~NpD~~~~~~v~~GL~~nk~~yG~~~CPCr~~~~~~ee~~d~~iiCPC~~~r~~~~~~G~   80 (108)
T PF02943_consen    1 KELEKMYKFLEKYAEKSGYKLNPDEEVTDDVLEGLARNKERYGYPYCPCRLASGKEEEVKDRDIICPCVPYREDDIEYGH   80 (108)
T ss_dssp             HHHHHHHHHHHHHHHHTT-B-BSSHHHHHHHHHHHHHHHHHHSS-B-SSC--S-HHHHHHH-TTBSS-HHHHHH------
T ss_pred             ChHHHHHHHHHHHHHHhCCEECCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCchhhhccCCeecCCHHHHhhcccccc
Confidence            68999999999999999999999999999999999999999999999999999777779999999999952    38999


Q ss_pred             eeEeeeeccchhhccCCC
Q 031465          117 TACSFSLQRTILLARISP  134 (159)
Q Consensus       117 CHC~LFvs~e~~~a~~~~  134 (159)
                      |||||||++++.+++.+.
T Consensus        81 ChC~Lf~~~e~~~~~~~~   98 (108)
T PF02943_consen   81 CHCGLFVSPEYAEAGKKQ   98 (108)
T ss_dssp             -TTSSSB-TTSTTB-S-S
T ss_pred             ceEeeeECcccccchhhc
Confidence            999999999999888754

It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit alpha and subunit beta. Subunit alpha is the variable subunit, and beta is the catalytic chain []. The structure of the beta subunit has been determined and found to fold around the FeS cluster [].; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0055114 oxidation-reduction process; PDB: 2PUK_E 2PVD_A 2PVG_A 2PUO_A 2PU9_A 1DJ7_A 2PVO_A.

>COG4802 FtrB Ferredoxin-thioredoxin reductase, catalytic subunit [Energy production and conversion]

Probab=100.00  E-value=3.9e-40  Score=249.90  Aligned_cols=90  Identities=33%  Similarity=0.576  Sum_probs=84.3

Q ss_pred             cCHHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCCCCCCcccc-chhhhhhCCceeecCcc----cc
Q 031465           38 PSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYD-DKAAEAQQGFWNCPCVP----MR  112 (159)
Q Consensus        38 ~see~le~~~~f~ekyAek~Gy~lNPD~evt~~Vi~GLa~NK~rYG~~~CPCRl~~-DkE~ev~D~diICPCvy----~~  112 (159)
                      .+++++++||+|+++||+|+||+||||+++|+.|++||+.||++||+++||||+++ ++++   |++|||||+|    |+
T Consensus         1 ~~~e~l~~my~~~eq~AeksG~~lnpD~e~~~~v~~gL~~~ke~yG~~~CPCRl~~g~eee---dk~ivCPCvy~~ddi~   77 (110)
T COG4802           1 ESDEELNKMYRFTEQYAEKSGYRLNPDREFTAEVLRGLASNKERYGYPSCPCRLVTGKEEE---DKDIVCPCVYRDDDIR   77 (110)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCceeCCCHHHHHHHHHHHHHhHHHhCCCCCCeecccCCHHH---hhceeccCcCCccchh
Confidence            36899999999999999999999999999999999999999999999999999999 6666   7779999999    89


Q ss_pred             cCceeeEeeeeccchhhc
Q 031465          113 ERNATACSFSLQRTILLA  130 (159)
Q Consensus       113 E~G~CHC~LFvs~e~~~a  130 (159)
                      +||.||||||++++..++
T Consensus        78 e~g~C~C~Lyl~~e~~e~   95 (110)
T COG4802          78 EYGECYCGLYLSPEKDEA   95 (110)
T ss_pred             hhCceeEEEEecccccch
Confidence            999999999999998644

>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=86.88  E-value=1.2  Score=33.92  Aligned_cols=81  Identities=15%  Similarity=0.185  Sum_probs=40.4

Q ss_pred             CcccccccccccccccCCCccccccCCceeeeec--cCCcCHH-HHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHH
Q 031465            1 MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRA--QVEPSEK-SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLAD   77 (159)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~see-~le~~~~f~ekyAek~Gy~lNPD~evt~~Vi~GLa~   77 (159)
                      |.+|+-+.++..++.+...+    |.-...++.+  ..+|.++ =+++++++..|-..+.|=..++.+++-..+-+-|.+
T Consensus         1 m~~~~~~~~~~~~~~s~~~~----Rni~~sa~~~~k~~DPIQklFldKIREY~~Ksks~gGklVD~~Pe~~kel~eel~k   76 (99)
T PF05511_consen    1 MALQRRLSSLLRSAVSVHLR----RNIGTSAVAFNKALDPIQKLFLDKIREYNQKSKSSGGKLVDAGPEYEKELNEELEK   76 (99)
T ss_dssp             ------------------------------------S--TTTHHHHHHHHHHHHHHTTTSS-STT--THHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHH----HHhhhhHHHHhcccChHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHH
Confidence            67777555555544444333    2212223332  2456555 578999999999999998999999999999999999


Q ss_pred             hHhhhCCC
Q 031465           78 HKDSLGAP   85 (159)
Q Consensus        78 NK~rYG~~   85 (159)
                      -...||..
T Consensus        77 L~r~YG~g   84 (99)
T PF05511_consen   77 LARQYGGG   84 (99)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHhCCc
Confidence            99999974

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
1dj7_A	117	Crystal Structure Of Ferredoxin Thioredoxin Reducta		3e-29
2puk_A	109	Crystal Srtucture Of The Binary Complex Between Fer		4e-29
2pu9_A	110	Crystal Srtucture Of The Binary Complex Between Fer		4e-29
2pvg_A	108	Crystal Srtucture Of The Binary Complex Between Fer		2e-28
2pvd_A	107	Crystal Srtucture Of The Reduced Ferredoxin:thiored		5e-28

>pdb|1DJ7|A Chain A, Crystal Structure Of Ferredoxin Thioredoxin Reductase Length = 117

Iteration: 1
 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 66/85 (77%)
Query: 39  SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
           + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct: 7   NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 66
Query: 99  AQQGFWNCPCVPMRERNATACSFSL 123
            +  FWNCPCVPMRER    C   L
Sbjct: 67  VKNTFWNCPCVPMRERKECHCMLFL 91

>pdb|2PUK|A Chain A, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 109

Iteration: 1
 Score =  123 bits (309), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 66/85 (77%)
Query: 39  SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
           + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct: 1   NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 60
Query: 99  AQQGFWNCPCVPMRERNATACSFSL 123
            +  FWNCPCVPMRER    C   L
Sbjct: 61  VKNTFWNCPCVPMRERKECHCMLFL 85

>pdb|2PU9|A Chain A, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin F Length = 110

Iteration: 1
 Score =  123 bits (309), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 65/83 (78%)
Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE +
Sbjct: 2   KTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVK 61
Query: 101 QGFWNCPCVPMRERNATACSFSL 123
             FWNCPCVPMRER    C   L
Sbjct: 62  NTFWNCPCVPMRERKECHCMLFL 84

>pdb|2PVG|A Chain A, Crystal Srtucture Of The Binary Complex Between Ferredoxin And Ferredoxin:thioredoxin Reductase Length = 108

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 64/82 (78%)
Query: 42  SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQ 101
           ++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE + 
Sbjct: 3   TLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKN 62
Query: 102 GFWNCPCVPMRERNATACSFSL 123
            FWNCPCVPMRER    C   L
Sbjct: 63  TFWNCPCVPMRERKECHCMLFL 84

>pdb|2PVD|A Chain A, Crystal Srtucture Of The Reduced Ferredoxin:thioredoxin Reductase Length = 107

Iteration: 1
 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 61/78 (78%)
Query: 46  MRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWN 105
           M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY DK AE +  FWN
Sbjct: 4   MKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYADKEAEVKNTFWN 63
Query: 106 CPCVPMRERNATACSFSL 123
           CPCVPMRER    C   L
Sbjct: 64  CPCVPMRERKECHCMLFL 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
1dj7_A	117	Ferredoxin thioredoxin reductase: catalytic chain;	7e-35

>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A Length = 117

 Score =  117 bits (293), Expect = 7e-35
 Identities = 51/86 (59%), Positives = 66/86 (76%)

Query: 34  AQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYD 93
           +    + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+
Sbjct: 2   SSDTQNNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYE 61

Query: 94  DKAAEAQQGFWNCPCVPMRERNATAC 119
           DK AE +  FWNCPCVPMRER    C
Sbjct: 62  DKEAEVKNTFWNCPCVPMRERKECHC 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
1dj7_A	117	Ferredoxin thioredoxin reductase: catalytic chain;	100.0

>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A

Probab=100.00  E-value=4.9e-46  Score=284.46  Aligned_cols=101  Identities=52%  Similarity=1.006  Sum_probs=93.1

Q ss_pred             ccCCcCHHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCCCCCCccccchhhhhhCCceeecCccccc
Q 031465           34 AQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRE  113 (159)
Q Consensus        34 ~~~~~see~le~~~~f~ekyAek~Gy~lNPD~evt~~Vi~GLa~NK~rYG~~~CPCRl~~DkE~ev~D~diICPCvy~~E  113 (159)
                      .+++++++++++|++|+++||+++||+||||+++|+.|++||++||++||+||||||++.|+|++++.++|||||+||++
T Consensus         2 ~~~~~~~~~~e~~~~f~ek~ae~~G~~~NpD~evt~~vi~GLa~nk~~yG~~~CPCR~~gdke~d~~~~~iiCPC~~~re   81 (117)
T 1dj7_A            2 SSDTQNNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRE   81 (117)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTTCBCBSSHHHHHHHHHHHHHHHHHHSSCBCSSSCCSCHHHHHHHCTTBSSCHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHhCCEECCCHHHHHHHHHHHHHHHHHhCCCCCCCcCCCChhhhcccCCeecCCcChhh
Confidence            46789999999999999999999999999999999999999999999999999999999999998888889999999999


Q ss_pred             CceeeEeeeeccchhhccCCC
Q 031465          114 RNATACSFSLQRTILLARISP  134 (159)
Q Consensus       114 ~G~CHC~LFvs~e~~~a~~~~  134 (159)
                      +|+|||||||++|+.|+|...
T Consensus        82 ~G~ChC~Lfvt~e~~~~g~~~  102 (117)
T 1dj7_A           82 RKECHCMLFLTPDNDFAGDAQ  102 (117)
T ss_dssp             HCCCTTSSSBCTTSTTBCSCS
T ss_pred             cCceeEeeeecccccccCccc
Confidence            999999999999999999653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d2pu9a1	108	g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductas	4e-37

>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]} Length = 108

class: Small proteins
fold: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
superfamily: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
family: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
domain: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
species: Synechocystis sp. [TaxId: 1143]

 Score =  121 bits (304), Expect = 4e-37
 Identities = 51/80 (63%), Positives = 64/80 (80%)

Query: 40  EKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEA 99
            K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE 
Sbjct: 1   NKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEV 60

Query: 100 QQGFWNCPCVPMRERNATAC 119
           +  FWNCPCVPMRER    C
Sbjct: 61  KNTFWNCPCVPMRERKECHC 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d2pu9a1	108	Ferredoxin thioredoxin reductase (FTR), catalytic	100.0

>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]}

class: Small proteins
fold: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
superfamily: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
family: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
domain: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
species: Synechocystis sp. [TaxId: 1143]

Probab=100.00  E-value=3.2e-46  Score=280.59  Aligned_cols=95  Identities=56%  Similarity=1.073  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCCCCCCccccchhhhhhCCceeecCcccccCceeeE
Q 031465           40 EKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERNATAC  119 (159)
Q Consensus        40 ee~le~~~~f~ekyAek~Gy~lNPD~evt~~Vi~GLa~NK~rYG~~~CPCRl~~DkE~ev~D~diICPCvy~~E~G~CHC  119 (159)
                      ++++|+|++|+++||+++||+||||+++|+.|++|||+||++||++|||||+++++++|++++.|||||+||+++|+|||
T Consensus         1 dk~le~~~~f~e~ya~~~G~~~npD~~v~~~vi~GLa~nk~~yG~~~CPCr~~~gk~ee~k~~~~iCPC~~~~e~g~ChC   80 (108)
T d2pu9a1           1 NKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRERKECHC   80 (108)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCBCBSSHHHHHHHHHHHHHHHHHHSSCBCTTBCCSCHHHHHHHCTTBSSCHHHHHHCCCTT
T ss_pred             ChhHHHHHHHHHHHHHHcCceeCCCHHHHHHHHHHHHHHHHHcCCCCCCcccCCCcHHHhhcCceecCCcChhhcCeeeE
Confidence            57999999999999999999999999999999999999999999999999999988888999999999999999999999


Q ss_pred             eeeeccchhhccCCC
Q 031465          120 SFSLQRTILLARISP  134 (159)
Q Consensus       120 ~LFvs~e~~~a~~~~  134 (159)
                      |||+++|++|+|...
T Consensus        81 ~Lf~t~e~~~~~~~q   95 (108)
T d2pu9a1          81 MLFLTPDNDFAGDAQ   95 (108)
T ss_dssp             SSSBCTTCTTBCSCS
T ss_pred             EEEeccccccccccc
Confidence            999999999999864