Citrus Sinensis ID: 031467

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MMSSGSSSCCSCRAVDVVTKSIDKKMDFALLTRKSPMRVVPRGTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGEPPISK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHcccccccccccccccccccccEEEccEEEEEccccccHHHHHHHHHHHHHHHccccccccccccccccEEcccccccEEEEEccccccccccccEEccccccccEEEccccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEcEcccccEEEEEcccccEEEccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHccccccEEEcccccccEEEEccccccEEEEEccccccccccccccEEEEccccEEEccccccccHHHHHcccccccc
Coil and Loop (DISEMBL)
mmssgsssccscravDVVTKSIDKKMDFAlltrkspmrvvprgtsitstrrsvcgvGVRASVVDSYESSSNFVKRMEQAWLisqqprpvscsscnsnghidckwcagtgffilgdnmlcqvpsrnttcvicagkgsvccsdckgtgfrakwlgeppisk
Flexible Loop (DISEMBL)
mmssgsssccscrAVDVVTKSIDKKMdfalltrkspmrvvprgtsitstrrsvcgvgVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTgfrakwlgeppisk
Low Complexity Region (SEG)
MMssgsssccscRAVDVVTKSIDKKMDFALLTRKSPMRVVPRGTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGEPPISK
Disordered region (IsUnstruct)
********CCSCRAVDVVTKSIDKKMDFALLTRKSPMRVVPRGTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWL*******
Disordered Region (DISOPRED)
**********************************************************************************SQQPRPVSCSSCNSNGHIDCKWCAGTGFFILG*N******SRNTTCVICAGKGSVCCSDCKGTGFRAKW*GE*****
Disordered Region (DISEMBL)
***********CRAVDVVTKSIDKKMDFALLTRKSPMRVVPRGTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLI************NSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGEPPISK
Disordered Region (DISPRO)
******SSCCSCRAVDVVTKSIDKKMDFALLTRKSPMRVVPRGTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGEPP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMSSGSSSCCSCRAVDVVTKSIDKKMDFALLTRKSPMRVVPRGTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGEPPISK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
255548678	144	conserved hypothetical protein [Ricinus	0.779	0.861	0.823	2e-53
224089396	139	predicted protein [Populus trichocarpa]	0.842	0.964	0.757	4e-52
225430533	146	PREDICTED: uncharacterized protein LOC10	0.647	0.705	0.864	3e-48
296082159	109	unnamed protein product [Vitis vinifera]	0.654	0.954	0.855	3e-48
449455499	153	PREDICTED: uncharacterized protein LOC10	0.924	0.960	0.666	2e-47
224141989	100	predicted protein [Populus trichocarpa]	0.628	1.0	0.86	2e-46
18400663	144	DnaJ/Hsp40 cysteine-rich domain-containi	0.874	0.965	0.621	7e-44
4337001	154	Tsi1-interacting protein TSIP1 [Nicotian	0.886	0.915	0.577	2e-43
297825509	145	hypothetical protein ARALYDRAFT_481346 [	0.729	0.8	0.646	2e-43
356507180	139	PREDICTED: uncharacterized protein LOC10	0.767	0.877	0.653	4e-41

>gi|255548678|ref|XP_002515395.1| conserved hypothetical protein [Ricinus communis] gi|223545339|gb|EEF46844.1| conserved hypothetical protein [Ricinus communis]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/130 (82%), Positives = 115/130 (88%), Gaps = 6/130 (4%)

Query: 32  TRKSP--MRVVPRGTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQQPRPV 89
           T ++P  M VVPRGT+    R  VC V  RASVVDSYESSSNF+KRMEQAWLISQQPRPV
Sbjct: 19  TNRAPINMGVVPRGTTTAFAR--VCRV--RASVVDSYESSSNFIKRMEQAWLISQQPRPV 74

Query: 90  SCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRA 149
            C+SCNSNGH+DCKWCAGTGFFILGDN+LCQVPSRNTTCVICAGKGS+CCSDCKGTGFRA
Sbjct: 75  GCTSCNSNGHVDCKWCAGTGFFILGDNILCQVPSRNTTCVICAGKGSMCCSDCKGTGFRA 134

Query: 150 KWLGEPPISK 159
           KWL EPPISK
Sbjct: 135 KWLEEPPISK 144

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089396|ref|XP_002308715.1| predicted protein [Populus trichocarpa] gi|222854691|gb|EEE92238.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/136 (75%), Positives = 118/136 (86%), Gaps = 2/136 (1%)

Query: 24  KKMDFALLTRKSPMRVVPRGTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLIS 83
           K MD  +   +  + +VP GTS +S+RR VCGV VRAS++DSYESSS+  KRMEQAWLIS
Sbjct: 6   KSMDINMSCLRRGVVIVPHGTSNSSSRR-VCGV-VRASMLDSYESSSDIAKRMEQAWLIS 63

Query: 84  QQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCK 143
           QQPRPVSC+SC+SNGH++C+WC GTGFFILGDNMLCQVPSRNTTCVICAGKGS+ CSDCK
Sbjct: 64  QQPRPVSCTSCDSNGHVECQWCRGTGFFILGDNMLCQVPSRNTTCVICAGKGSMRCSDCK 123

Query: 144 GTGFRAKWLGEPPISK 159
           GTGFRAKWLGEP ISK
Sbjct: 124 GTGFRAKWLGEPLISK 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430533|ref|XP_002285576.1| PREDICTED: uncharacterized protein LOC100242360 [Vitis vinifera]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/103 (86%), Positives = 97/103 (94%)

Query: 57  GVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDN 116
           GVRAS+VDSYESSSNF KRMEQAWLISQQPRPVSC+SC + GH++CKWC GTGFFILG+N
Sbjct: 44  GVRASMVDSYESSSNFAKRMEQAWLISQQPRPVSCTSCETKGHVECKWCGGTGFFILGNN 103

Query: 117 MLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGEPPISK 159
           MLCQVPSRNT+CVICAGKGS CCSDCKGTGFRA WLGEPP+SK
Sbjct: 104 MLCQVPSRNTSCVICAGKGSTCCSDCKGTGFRAMWLGEPPVSK 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082159|emb|CBI21164.3| unnamed protein product [Vitis vinifera]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/104 (85%), Positives = 97/104 (93%)

Query: 56  VGVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGD 115
            GVRAS+VDSYESSSNF KRMEQAWLISQQPRPVSC+SC + GH++CKWC GTGFFILG+
Sbjct: 6   FGVRASMVDSYESSSNFAKRMEQAWLISQQPRPVSCTSCETKGHVECKWCGGTGFFILGN 65

Query: 116 NMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGEPPISK 159
           NMLCQVPSRNT+CVICAGKGS CCSDCKGTGFRA WLGEPP+SK
Sbjct: 66  NMLCQVPSRNTSCVICAGKGSTCCSDCKGTGFRAMWLGEPPVSK 109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455499|ref|XP_004145490.1| PREDICTED: uncharacterized protein LOC101210374 [Cucumis sativus] gi|449485210|ref|XP_004157101.1| PREDICTED: uncharacterized LOC101210374 [Cucumis sativus]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/159 (66%), Positives = 125/159 (78%), Gaps = 12/159 (7%)

Query: 6   SSSCCSCRAVDVVTKSIDKK-----MDFALLTRKSPMRVVPRGTSITSTRRSVCGVGVRA 60
           SSS C C++V ++ KSID K        ++ +R +  RV    + +  +R  +CGV  RA
Sbjct: 2   SSSVC-CKSV-IMAKSIDSKGFACTRTVSICSRFAANRVSLIDSRLFKSR--ICGV--RA 55

Query: 61  SVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQ 120
           S+VDSY  SS+FVKRMEQAW ISQQPRP+ CSSCNSNGH++CKWC GTGFFILGDNMLCQ
Sbjct: 56  SMVDSY-GSSDFVKRMEQAWEISQQPRPICCSSCNSNGHVECKWCRGTGFFILGDNMLCQ 114

Query: 121 VPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGEPPISK 159
           VPSRNT+CVICAGKGS CCSDCKGTG+RAKWLGEPPISK
Sbjct: 115 VPSRNTSCVICAGKGSRCCSDCKGTGYRAKWLGEPPISK 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141989|ref|XP_002324343.1| predicted protein [Populus trichocarpa] gi|222865777|gb|EEF02908.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/100 (86%), Positives = 97/100 (97%)

Query: 58  VRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNM 117
           VRAS+VDSYES S+FVKRMEQAWLISQQPRPV+C+SC+SNG ++C+WC GTGFFILGDNM
Sbjct: 1   VRASMVDSYESYSDFVKRMEQAWLISQQPRPVACTSCDSNGQVECQWCRGTGFFILGDNM 60

Query: 118 LCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGEPPI 157
           LCQVPSRNTTCVICAGKGS+CCSDCKGTGFRA+WLG+PPI
Sbjct: 61  LCQVPSRNTTCVICAGKGSMCCSDCKGTGFRARWLGKPPI 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400663|ref|NP_565578.1| DnaJ/Hsp40 cysteine-rich domain-containing protein [Arabidopsis thaliana] gi|15294198|gb|AAK95276.1|AF410290_1 At2g24860/F27C12.22 [Arabidopsis thaliana] gi|20197874|gb|AAD23026.2| expressed protein [Arabidopsis thaliana] gi|20453299|gb|AAM19888.1| At2g24860/F27C12.22 [Arabidopsis thaliana] gi|21618127|gb|AAM67177.1| Tsi1-interacting protein TSIP1 [Arabidopsis thaliana] gi|51970710|dbj|BAD44047.1| unknown protein [Arabidopsis thaliana] gi|330252543|gb|AEC07637.1| DnaJ/Hsp40 cysteine-rich domain-containing protein [Arabidopsis thaliana]

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 92/148 (62%), Positives = 109/148 (73%), Gaps = 9/148 (6%)

Query: 10  CSCRAVDVVTKSIDKKMDFALLTRKSPMRVVPRGTSITSTRRSVCGVGVRASVVDSYESS 69
           C C    +V KSI    +   +T+   + VV R  + T+         V+AS VDS ESS
Sbjct: 4   CMCCDSHLVAKSILNPWNSPRITKLGFVPVVRRFPATTT---------VKASAVDSPESS 54

Query: 70  SNFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCV 129
           SNF KRM+QAW+ISQQP PV CSSCNS GH++CKWCAGTGFFILGDNMLCQVPSRNT+CV
Sbjct: 55  SNFAKRMDQAWIISQQPSPVGCSSCNSKGHVECKWCAGTGFFILGDNMLCQVPSRNTSCV 114

Query: 130 ICAGKGSVCCSDCKGTGFRAKWLGEPPI 157
           IC+G+GS  CSDCKGTGFRAKWL +PP+
Sbjct: 115 ICSGQGSASCSDCKGTGFRAKWLEKPPV 142

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4337001|gb|AAD18030.1| Tsi1-interacting protein TSIP1 [Nicotiana tabacum]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 115/161 (71%), Gaps = 20/161 (12%)

Query: 2   MSSGSSSCCSCRAVDVVTKSIDKKM----DFALLTRKSP-MRVVPRGTSITSTRRSVCGV 56
           M+S S+  CSCR +     +I  +        L+   +P ++ VPR              
Sbjct: 1   MASSSTCTCSCRPIITAKSNIINRFVTPRGIQLIFHGNPRLKQVPRI------------F 48

Query: 57  GVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDN 116
            VRAS VDS   SS+FV+RME+AWLIS+QPRP+ CS+C SNGH++CKWC+GTGFF+LGDN
Sbjct: 49  AVRASAVDS---SSSFVERMEKAWLISKQPRPIVCSTCGSNGHVECKWCSGTGFFVLGDN 105

Query: 117 MLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGEPPI 157
           MLCQVPSRNT+CVICAGKGSVCC+DCKGTG RAKWLGEPP+
Sbjct: 106 MLCQVPSRNTSCVICAGKGSVCCTDCKGTGHRAKWLGEPPL 146

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825509|ref|XP_002880637.1| hypothetical protein ARALYDRAFT_481346 [Arabidopsis lyrata subsp. lyrata] gi|297326476|gb|EFH56896.1| hypothetical protein ARALYDRAFT_481346 [Arabidopsis lyrata subsp. lyrata]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 100/133 (75%), Gaps = 17/133 (12%)

Query: 25  KMDFALLTRKSPMRVVPRGTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQ 84
           K+ F L+ R+ P   +                 V+AS VDS ESSSNF KRM+QAW+ISQ
Sbjct: 28  KLGFVLVGRRFPATTI-----------------VKASAVDSPESSSNFAKRMDQAWIISQ 70

Query: 85  QPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKG 144
           QP PV CSSCNS GH++CKWCAGTGFFILGDNMLCQVPSRNT+CVIC+G+GS  CSDCKG
Sbjct: 71  QPSPVGCSSCNSKGHVECKWCAGTGFFILGDNMLCQVPSRNTSCVICSGQGSASCSDCKG 130

Query: 145 TGFRAKWLGEPPI 157
           TGFRAKWL +PP+
Sbjct: 131 TGFRAKWLEKPPV 143

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507180|ref|XP_003522348.1| PREDICTED: uncharacterized protein LOC100810900 [Glycine max]

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/124 (65%), Positives = 100/124 (80%), Gaps = 2/124 (1%)

Query: 35  SPMRVVPRGTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSC 94
           SP+++              CG+ V+ S+VDS  SS++F +R+E+AWLIS+QP P+ CSSC
Sbjct: 18  SPIQIPIHNAVKVRGNNRTCGLRVQLSMVDS--SSADFTRRIERAWLISKQPGPIVCSSC 75

Query: 95  NSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGE 154
           +S GHI+CKWCAGTGFFILGDNMLC+VPSRNTTC+IC GKGS+CCSDC+GTGFRAKWLGE
Sbjct: 76  DSKGHIECKWCAGTGFFILGDNMLCEVPSRNTTCIICTGKGSMCCSDCQGTGFRAKWLGE 135

Query: 155 PPIS 158
           PP S
Sbjct: 136 PPSS 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2047426	144	AT2G24860 [Arabidopsis thalian	0.761	0.840	0.707	1.3e-45
TAIR|locus:2079132	136	AT3G47650 [Arabidopsis thalian	0.691	0.808	0.263	7.8e-07
TAIR|locus:2044812	186	EDA3 "embryo sac development a	0.811	0.693	0.268	0.00011
UNIPROTKB|G4N8Z4	59	MGG_17224 "Uncharacterized pro	0.301	0.813	0.368	0.00021
ZFIN|ZDB-GENE-070424-72	417	zgc:162724 "zgc:162724" [Danio	0.358	0.136	0.338	0.00047
TAIR|locus:2005585	154	LQY1 "LOW QUANTUM YIELD OF PHO	0.371	0.383	0.306	0.00062
TAIR|locus:2175966	154	AT5G17840 [Arabidopsis thalian	0.339	0.350	0.315	0.00062
TAIR|locus:2009482	110	AT1G22630 [Arabidopsis thalian	0.377	0.545	0.323	0.00097

TAIR|locus:2047426 AT2G24860 [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 87/123 (70%), Positives = 99/123 (80%)

Query:    35 SPMRVVPRGTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSSC 94
             SP R+   G  +   RR      V+AS VDS ESSSNF KRM+QAW+ISQQP PV CSSC
Sbjct:    22 SP-RITKLGF-VPVVRRFPATTTVKASAVDSPESSSNFAKRMDQAWIISQQPSPVGCSSC 79

Query:    95 NSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGE 154
             NS GH++CKWCAGTGFFILGDNMLCQVPSRNT+CVIC+G+GS  CSDCKGTGFRAKWL +
Sbjct:    80 NSKGHVECKWCAGTGFFILGDNMLCQVPSRNTSCVICSGQGSASCSDCKGTGFRAKWLEK 139

Query:   155 PPI 157
             PP+
Sbjct:   140 PPV 142

GO:0005576 "extracellular region" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2079132 AT3G47650 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 30/114 (26%), Positives = 50/114 (43%)

Query:    34 KSPMRVVPRGTSITSTRRSVCGVGVRASVVDSYESSSNFVKRMEQAWLISQQPRPVSCSS 93
             +SP +  P+ +   ST  +   +  +  ++ +  S S  VK          +P  + C++
Sbjct:    17 QSPSKN-PKPSHFFSTNDNTSSLVQKRELLQTSRSQSFEVKAANNNPQ-GTKPNSLVCAN 74

Query:    94 CNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGF 147
             C   G + C  C G G  ++ D+   Q  +    C +C GK  V C DC G GF
Sbjct:    75 CEGEGCVACSQCKGGGVNLI-DHFNGQFKA-GALCWLCRGKKEVLCGDCNGAGF 126

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TAIR|locus:2044812 EDA3 "embryo sac development arrest 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 0.00011, P = 0.00011
 Identities = 36/134 (26%), Positives = 55/134 (41%)

Query:    15 VDVVTKSIDKKMDFALLTRKSPMRVVPR--GTSITSTRRSVCGVGVRASVVDSYESSSNF 72
             V V+ KS  +   F      S      +  G   + +RR      V AS      +S  F
Sbjct:    27 VRVLAKSCPENQSFDSNDSDSSSETTHKAQGDQKSVSRRQWMTACVCASAA-LISNSYTF 85

Query:    73 VKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICA 132
             V  ++ A  + ++P   SC +C  +G + C  C GTG +   +    +     T C  C 
Sbjct:    86 VS-VQSAAALDKKPGG-SCRNCQGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCY 143

Query:   133 GKGSVCCSDCKGTG 146
             G+G + C  C GTG
Sbjct:   144 GRGKLVCPVCLGTG 157

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009561 "megagametogenesis" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

UNIPROTKB|G4N8Z4 MGG_17224 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 21/57 (36%), Positives = 26/57 (45%)

Query:    90 SCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTG 146
             +CSSC+  G   C  C GTG  I  +   C +      C  C  +G V CS C G G
Sbjct:     8 TCSSCSGTGQCTCLRCGGTGSDIFAE---CGI------CPHCYARGQVPCSACGGKG 55

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-070424-72 zgc:162724 "zgc:162724" [Danio rerio (taxid:7955)]

 Score = 104 (41.7 bits), Expect = 0.00047, P = 0.00047
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query:    90 SCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRN--TTCVICAGKGSVCCSDCKGTG 146
             +C  C ++G   C  C GTG+    +   C + S +    C  C G GS+ C  CKG G
Sbjct:   229 ACRKCVNSGRTRCGHCCGTGWISSSERRRCGLCSGSGMVRCHSCGGVGSITCKTCKGHG 287

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2005585 LQY1 "LOW QUANTUM YIELD OF PHOTOSYSTEM II 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 0.00062, P = 0.00061
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query:    91 CSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAK 150
             C  CN  G   C+ C G+G   +    L       + C+ C G GS+ C+ C+G+G + +
Sbjct:    87 CFPCNGTGAQKCRLCVGSGNVTVE---LGGGEKEVSNCINCDGAGSLTCTTCQGSGVQPR 143

Query:   151 WL 152
             +L
Sbjct:   144 YL 145

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2175966 AT5G17840 [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 0.00062, P = 0.00061
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query:    91 CSSCNSNGHIDCKWCAGTGFFILGDNML-CQVPSRNTTCVICAGKGSVCCSDCKGTG 146
             C+ C + G + C  C+GTG ++  D+++  Q       C+ C G G++ C  C G G
Sbjct:    96 CTCCEAKGALLCSTCSGTGLYV--DSIMESQGIIVKVRCLGCGGSGNIMCKLCGGRG 150

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2009482 AT1G22630 [Arabidopsis thaliana (taxid:3702)]

 Score = 84 (34.6 bits), Expect = 0.00097, P = 0.00097
 Identities = 21/65 (32%), Positives = 25/65 (38%)

Query:    90 SCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRA 149
             SC +C + G I+C  C GTG      NM          C  C G G   C  C   G   
Sbjct:    50 SCETCGAKGAIECPGCKGTGKNKKNGNMF-----ERWKCFDCQGFGMKSCPKCGKGGLTP 104

Query:   150 KWLGE 154
             +  GE
Sbjct:   105 EQRGE 109


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.133   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      159       149   0.00078  104 3  11 22  0.43    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  154 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.36u 0.23s 15.59t   Elapsed:  00:00:01
  Total cpu time:  15.36u 0.23s 15.59t   Elapsed:  00:00:01
  Start:  Sat May 11 03:11:08 2013   End:  Sat May 11 03:11:09 2013

GO:0009507 "chloroplast" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00061977 hypothetical protein (139 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-06
PLN03165	111	PLN03165, PLN03165, chaperone protein dnaJ-related	3e-04
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	6e-04
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	8e-04
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	9e-04
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	0.001
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	0.001

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 86  PRPVSCSSCN------SNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVC- 138
           PR  SC +C+            C  C GTG              +  TC  C G+G +  
Sbjct: 141 PRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK 200

Query: 139 --CSDCKGTGFRAK 150
             CS CKG G   +
Sbjct: 201 EPCSTCKGKGRVKE 214

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|178709 PLN03165, PLN03165, chaperone protein dnaJ-related; Provisional

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 91  CSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAK 150
           C  C+  G   C++C G+G   +    L       + C+ C G GS+ C+ C+G+G + +
Sbjct: 44  CFPCSGTGAQVCRFCVGSGNVTV---ELGGGEKEVSKCINCDGAGSLTCTTCQGSGIQPR 100

Query: 151 WL 152
           +L
Sbjct: 101 YL 102

Length = 111

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 11/70 (15%)

Query: 86  PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVC- 138
            R V+CS+C+ +G         C  C G+G             S   TC  C G G +  
Sbjct: 140 TRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFF--SFQQTCPTCNGTGKIIK 197

Query: 139 --CSDCKGTG 146
             C  CKG G
Sbjct: 198 DPCGKCKGKG 207

Length = 371

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 17/73 (23%)

Query: 87  RPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVP----SRNTTCVICAGKGS 136
           R  +C +CN +G       + C  C G+G       +  Q P     R  TC +C G G 
Sbjct: 145 REATCHTCNGSGAKPGTSPVTCGKCHGSGVI----TVDTQTPLGMMRRQVTCDVCHGTGK 200

Query: 137 VC---CSDCKGTG 146
                C  C GTG
Sbjct: 201 EIKEPCQTCHGTG 213

Length = 380

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 38.2 bits (89), Expect = 9e-04
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 86  PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-- 137
           PR V C +C   G+        C  C G+G  I       ++   + TC  C G+G +  
Sbjct: 154 PRYVPCEACGGTGYDPGSGEKVCPTCGGSG-EIYQRGGFFRI---SQTCPTCGGEGVLRE 209

Query: 138 CCSDCKGTGF 147
            CS C G G 
Sbjct: 210 PCSKCNGRGL 219

Length = 382

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 89  VSCSSC------NSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVC---C 139
           V CS C       +NG   C  C G+G      N +       +TC  C G+G +    C
Sbjct: 155 VPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKC 214

Query: 140 SDCKGTG 146
             C G G
Sbjct: 215 KKCGGEG 221

Length = 386

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 25/81 (30%), Positives = 28/81 (34%), Gaps = 18/81 (22%)

Query: 89  VSCSSCNSNGHI-----DCKWCAGTGFFILGDNMLCQVPSRNT---------TCVICAGK 134
             C  C   G I     +C  C GTGF    D       SR T          C  C GK
Sbjct: 3   KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGK 62

Query: 135 GSV----CCSDCKGTGFRAKW 151
           G+V     C +C GTG     
Sbjct: 63  GTVTVYDTCPECGGTGKVLTC 83

Length = 715

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
PLN03165	111	chaperone protein dnaJ-related; Provisional	99.4
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.33
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.25
PRK14298	377	chaperone protein DnaJ; Provisional	98.99
PRK14276	380	chaperone protein DnaJ; Provisional	98.99
PRK14280	376	chaperone protein DnaJ; Provisional	98.99
PRK14282	369	chaperone protein DnaJ; Provisional	98.98
PRK14278	378	chaperone protein DnaJ; Provisional	98.97
PRK14296	372	chaperone protein DnaJ; Provisional	98.95
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	98.94
PRK14277	386	chaperone protein DnaJ; Provisional	98.92
PRK14279	392	chaperone protein DnaJ; Provisional	98.9
PRK14281	397	chaperone protein DnaJ; Provisional	98.89
PRK14285	365	chaperone protein DnaJ; Provisional	98.88
PRK14297	380	chaperone protein DnaJ; Provisional	98.87
PRK14286	372	chaperone protein DnaJ; Provisional	98.86
PRK14287	371	chaperone protein DnaJ; Provisional	98.86
PTZ00037	421	DnaJ_C chaperone protein; Provisional	98.85
PRK14300	372	chaperone protein DnaJ; Provisional	98.85
PRK14284	391	chaperone protein DnaJ; Provisional	98.83
PRK10767	371	chaperone protein DnaJ; Provisional	98.82
PRK14288	369	chaperone protein DnaJ; Provisional	98.82
PRK14301	373	chaperone protein DnaJ; Provisional	98.82
PRK14295	389	chaperone protein DnaJ; Provisional	98.8
PRK14283	378	chaperone protein DnaJ; Provisional	98.79
PRK14289	386	chaperone protein DnaJ; Provisional	98.79
PRK14293	374	chaperone protein DnaJ; Provisional	98.79
PRK14291	382	chaperone protein DnaJ; Provisional	98.78
PRK14294	366	chaperone protein DnaJ; Provisional	98.76
PRK14290	365	chaperone protein DnaJ; Provisional	98.75
PRK14292	371	chaperone protein DnaJ; Provisional	98.71
KOG2813	406	consensus Predicted molecular chaperone, contains	98.65
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	98.62
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.04
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.95
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.42
PLN03165	111	chaperone protein dnaJ-related; Provisional	97.16
PRK14279	392	chaperone protein DnaJ; Provisional	97.09
PRK14296	372	chaperone protein DnaJ; Provisional	97.03
PRK14284	391	chaperone protein DnaJ; Provisional	97.03
PRK10767	371	chaperone protein DnaJ; Provisional	96.96
PRK14282	369	chaperone protein DnaJ; Provisional	96.91
PRK14298	377	chaperone protein DnaJ; Provisional	96.9
PRK14300	372	chaperone protein DnaJ; Provisional	96.88
PRK14301	373	chaperone protein DnaJ; Provisional	96.88
PRK14286	372	chaperone protein DnaJ; Provisional	96.88
PRK14276	380	chaperone protein DnaJ; Provisional	96.83
PRK14285	365	chaperone protein DnaJ; Provisional	96.82
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.79
PRK14297	380	chaperone protein DnaJ; Provisional	96.76
PRK14295	389	chaperone protein DnaJ; Provisional	96.75
PRK14278	378	chaperone protein DnaJ; Provisional	96.75
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	96.72
PTZ00037	421	DnaJ_C chaperone protein; Provisional	96.7
PRK14288	369	chaperone protein DnaJ; Provisional	96.67
PRK14287	371	chaperone protein DnaJ; Provisional	96.66
PRK14290	365	chaperone protein DnaJ; Provisional	96.66
PRK14294	366	chaperone protein DnaJ; Provisional	96.65
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.63
PRK14289	386	chaperone protein DnaJ; Provisional	96.61
PRK14291	382	chaperone protein DnaJ; Provisional	96.6
PRK14280	376	chaperone protein DnaJ; Provisional	96.57
PRK14293	374	chaperone protein DnaJ; Provisional	96.45
PRK14277	386	chaperone protein DnaJ; Provisional	96.45
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	96.44
PRK14281	397	chaperone protein DnaJ; Provisional	96.44
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	96.39
PRK14283	378	chaperone protein DnaJ; Provisional	96.39
KOG2813	406	consensus Predicted molecular chaperone, contains	96.05
PRK14292	371	chaperone protein DnaJ; Provisional	96.03
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.67
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	95.47
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	91.4
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	89.65
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	87.71
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	84.93
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	84.14
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	82.37
PRK00635	1809	excinuclease ABC subunit A; Provisional	81.95
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	81.81

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=99.40  E-value=3.4e-13  Score=102.74  Aligned_cols=68  Identities=25%  Similarity=0.735  Sum_probs=57.5

Q ss_pred             CCCCccCCCCCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCCccceeeCCCCCceeEEeeccCCC
Q 031467           85 QPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKWLGEP  155 (159)
Q Consensus        85 ~~r~~~C~~C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i~C~~C~GtG~v~kwl~~~  155 (159)
                      ....+.|..|+|+|..+|+.|+|+|++.....   ...+..++|+.|.|+|+..|+.|+|.|++.+||..-
T Consensus        38 ~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~---g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~~~~~  105 (111)
T PLN03165         38 RENTQPCFPCSGTGAQVCRFCVGSGNVTVELG---GGEKEVSKCINCDGAGSLTCTTCQGSGIQPRYLDRR  105 (111)
T ss_pred             hccCCCCCCCCCCCCcCCCCCcCcCeEEEEeC---CcEEEEEECCCCCCcceeeCCCCCCCEEEeeeeccc
Confidence            34578899999999999999999999864321   122567899999999999999999999999999764

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=5.5e-13  Score=118.83  Aligned_cols=79  Identities=32%  Similarity=0.600  Sum_probs=64.9

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      ++..-||.|..-..+    ++.+.|+.|+|+|+      ++|+.|+|+|+++..+++  ...+.+++|+.|+|+|.+   
T Consensus       121 ~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~  198 (371)
T COG0484         121 NLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKD  198 (371)
T ss_pred             EEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCC
Confidence            555556666555544    67889999999987      689999999999887755  233678999999999998   


Q ss_pred             eCCCCCceeEEeec
Q 031467          138 CCSDCKGTGFRAKW  151 (159)
Q Consensus       138 ~C~~C~GtG~v~kw  151 (159)
                      +|++|+|.|++.++
T Consensus       199 pC~~C~G~G~v~~~  212 (371)
T COG0484         199 PCGKCKGKGRVKKK  212 (371)
T ss_pred             CCCCCCCCCeEeee
Confidence            89999999999876

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.25  E-value=5.3e-12  Score=86.74  Aligned_cols=56  Identities=34%  Similarity=0.778  Sum_probs=43.9

Q ss_pred             CCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee----eCCCCCcee
Q 031467           91 CSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV----CCSDCKGTG  146 (159)
Q Consensus        91 C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i----~C~~C~GtG  146 (159)
                      |+.|+|+|+      .+|+.|+|+|++....+....+.+..++|+.|+|+|++    +|++|+|.|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            899999998      57999999999987665433444678999999999998    599999986

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14298 chaperone protein DnaJ; Provisional

Probab=98.99  E-value=3.1e-10  Score=100.24  Aligned_cols=80  Identities=33%  Similarity=0.600  Sum_probs=62.2

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||+++.-..+    .+.+.|..|+|+|.      .+|+.|+|+|++....+......+..++|+.|.|+|.+   
T Consensus       120 ~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~  199 (377)
T PRK14298        120 DLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIES  199 (377)
T ss_pred             EEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCC
Confidence            444446777665555    57889999999996      67999999999876554322333667899999999987   


Q ss_pred             eCCCCCceeEEee
Q 031467          138 CCSDCKGTGFRAK  150 (159)
Q Consensus       138 ~C~~C~GtG~v~k  150 (159)
                      +|+.|+|.|.+..
T Consensus       200 ~C~~C~G~g~v~~  212 (377)
T PRK14298        200 PCPVCSGTGKVRK  212 (377)
T ss_pred             CCCCCCCccEEEE
Confidence            9999999999853

>PRK14276 chaperone protein DnaJ; Provisional

Probab=98.99  E-value=3.7e-10  Score=99.64  Aligned_cols=79  Identities=28%  Similarity=0.652  Sum_probs=61.3

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||++..-..+    .+.+.|..|+|+|.      .+|+.|+|+|++....++.....+...+|+.|.|+|++   
T Consensus       125 ~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~  204 (380)
T PRK14276        125 RVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKE  204 (380)
T ss_pred             EEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccC
Confidence            344446676655544    67889999999996      57999999999876655433222457899999999998   


Q ss_pred             eCCCCCceeEEe
Q 031467          138 CCSDCKGTGFRA  149 (159)
Q Consensus       138 ~C~~C~GtG~v~  149 (159)
                      +|+.|+|.|++.
T Consensus       205 ~C~~C~G~g~~~  216 (380)
T PRK14276        205 PCQTCHGTGHEK  216 (380)
T ss_pred             CCCCCCCceEEE
Confidence            999999999875

>PRK14280 chaperone protein DnaJ; Provisional

Probab=98.99  E-value=4.8e-10  Score=98.79  Aligned_cols=80  Identities=26%  Similarity=0.592  Sum_probs=61.3

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||+++.-..+    .+.+.|..|+|+|.      .+|+.|+|+|++....+......+...+|+.|+|+|.+   
T Consensus       122 ~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~  201 (376)
T PRK14280        122 TMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKE  201 (376)
T ss_pred             EEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecC
Confidence            344446777665554    57889999999995      57999999999876554322222457899999999998   


Q ss_pred             eCCCCCceeEEee
Q 031467          138 CCSDCKGTGFRAK  150 (159)
Q Consensus       138 ~C~~C~GtG~v~k  150 (159)
                      +|+.|+|.|.+.+
T Consensus       202 ~C~~C~G~g~v~~  214 (376)
T PRK14280        202 KCPTCHGKGKVRK  214 (376)
T ss_pred             CCCCCCCceEEEE
Confidence            8999999998853

>PRK14282 chaperone protein DnaJ; Provisional

Probab=98.98  E-value=5.2e-10  Score=98.20  Aligned_cols=80  Identities=24%  Similarity=0.509  Sum_probs=61.7

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||++..-..+    .+.+.|..|+|+|.      ++|+.|+|+|++....++.....+..++|+.|.|+|++   
T Consensus       131 ~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~  210 (369)
T PRK14282        131 EIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGE  210 (369)
T ss_pred             EEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCC
Confidence            344445666554444    57889999999996      57999999999876655433333567899999999998   


Q ss_pred             eCCCCCceeEEee
Q 031467          138 CCSDCKGTGFRAK  150 (159)
Q Consensus       138 ~C~~C~GtG~v~k  150 (159)
                      .|+.|+|.|++..
T Consensus       211 ~C~~C~G~g~v~~  223 (369)
T PRK14282        211 YCHECGGSGRIRR  223 (369)
T ss_pred             CCCCCCCceeEEE
Confidence            9999999998765

>PRK14278 chaperone protein DnaJ; Provisional

Probab=98.97  E-value=4.2e-10  Score=99.31  Aligned_cols=80  Identities=23%  Similarity=0.482  Sum_probs=61.2

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||+++.-..+    .+.+.|..|+|+|.      .+|+.|+|+|++....+.+....+..++|+.|+|+|.+   
T Consensus       118 ~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~  197 (378)
T PRK14278        118 RMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPD  197 (378)
T ss_pred             EEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCC
Confidence            344446777665555    57889999999996      57999999999866544322222457799999999998   


Q ss_pred             eCCCCCceeEEee
Q 031467          138 CCSDCKGTGFRAK  150 (159)
Q Consensus       138 ~C~~C~GtG~v~k  150 (159)
                      +|+.|+|.|.+.+
T Consensus       198 ~C~~C~G~g~v~~  210 (378)
T PRK14278        198 PCHECAGDGRVRA  210 (378)
T ss_pred             CCCCCCCceeEec
Confidence            9999999998753

>PRK14296 chaperone protein DnaJ; Provisional

Probab=98.95  E-value=4.2e-10  Score=99.26  Aligned_cols=79  Identities=25%  Similarity=0.534  Sum_probs=61.3

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||++..-..+    .+.+.|..|+|+|.      .+|+.|+|+|++....++.....+..++|+.|.|+|++   
T Consensus       128 ~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~  207 (372)
T PRK14296        128 DIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKN  207 (372)
T ss_pred             EeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecc
Confidence            555566777655544    57889999999996      57999999999876654322222456899999999998   


Q ss_pred             eCCCCCceeEEe
Q 031467          138 CCSDCKGTGFRA  149 (159)
Q Consensus       138 ~C~~C~GtG~v~  149 (159)
                      .|+.|+|.|.+.
T Consensus       208 ~C~~C~G~g~v~  219 (372)
T PRK14296        208 KCKNCKGKGKYL  219 (372)
T ss_pred             cccCCCCceEEE
Confidence            899999999875

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=98.94  E-value=1.1e-09  Score=95.22  Aligned_cols=80  Identities=30%  Similarity=0.611  Sum_probs=61.9

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||+++.-..+    .+.+.|..|+|+|.      .+|+.|+|+|++....++.....+...+|+.|.|+|.+   
T Consensus       122 ~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~  201 (354)
T TIGR02349       122 DLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKE  201 (354)
T ss_pred             EEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCC
Confidence            334446777665555    67899999999995      57999999999876655433333557899999999998   


Q ss_pred             eCCCCCceeEEee
Q 031467          138 CCSDCKGTGFRAK  150 (159)
Q Consensus       138 ~C~~C~GtG~v~k  150 (159)
                      +|+.|+|.|.+..
T Consensus       202 ~C~~C~G~g~v~~  214 (354)
T TIGR02349       202 PCSTCKGKGRVKE  214 (354)
T ss_pred             CCCCCCCCcEecc
Confidence            8999999998753

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14277 chaperone protein DnaJ; Provisional

Probab=98.92  E-value=1e-09  Score=96.97  Aligned_cols=79  Identities=28%  Similarity=0.532  Sum_probs=61.3

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||+++.-..+    .+.+.|..|+|+|.      .+|+.|+|+|++....++.....+..++|+.|.|+|.+   
T Consensus       134 ~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~  213 (386)
T PRK14277        134 DLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITD  213 (386)
T ss_pred             EEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccC
Confidence            444456777765555    57889999999996      57999999999876555332222456899999999998   


Q ss_pred             eCCCCCceeEEe
Q 031467          138 CCSDCKGTGFRA  149 (159)
Q Consensus       138 ~C~~C~GtG~v~  149 (159)
                      +|+.|+|.|.+.
T Consensus       214 ~C~~C~G~g~v~  225 (386)
T PRK14277        214 PCNKCGGTGRIR  225 (386)
T ss_pred             CCCCCCCCcEEe
Confidence            899999999985

>PRK14279 chaperone protein DnaJ; Provisional

Probab=98.90  E-value=1.6e-09  Score=96.10  Aligned_cols=75  Identities=27%  Similarity=0.605  Sum_probs=59.7

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||++..-..+    .+.+.|..|+|+|.      .+|+.|+|+|++.....++    +.+++|+.|+|+|++   
T Consensus       152 ~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~----~~~~~C~~C~G~G~~i~~  227 (392)
T PRK14279        152 ETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAF----GFSEPCTDCRGTGSIIED  227 (392)
T ss_pred             EEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecce----EEEEecCCCCceeEEeCC
Confidence            444456777655544    57889999999996      5799999999986554332    356899999999998   


Q ss_pred             eCCCCCceeEEe
Q 031467          138 CCSDCKGTGFRA  149 (159)
Q Consensus       138 ~C~~C~GtG~v~  149 (159)
                      +|+.|+|.|.+.
T Consensus       228 ~C~~C~G~g~v~  239 (392)
T PRK14279        228 PCEECKGTGVTT  239 (392)
T ss_pred             cCCCCCCCeEEE
Confidence            999999999885

>PRK14281 chaperone protein DnaJ; Provisional

Probab=98.89  E-value=1.2e-09  Score=97.06  Aligned_cols=80  Identities=25%  Similarity=0.540  Sum_probs=62.3

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-----ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---e
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---C  138 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~  138 (159)
                      .+..-||++..-..+    .+.+.|..|+|+|.     .+|+.|+|+|++....+.+....+.+++|+.|.|+|.+   +
T Consensus       142 ~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~  221 (397)
T PRK14281        142 RLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDR  221 (397)
T ss_pred             EEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCC
Confidence            455556777765555    57889999999996     57999999999876554333332457899999999997   9


Q ss_pred             CCCCCceeEEee
Q 031467          139 CSDCKGTGFRAK  150 (159)
Q Consensus       139 C~~C~GtG~v~k  150 (159)
                      |+.|+|.|.+..
T Consensus       222 C~~C~G~g~v~~  233 (397)
T PRK14281        222 CPACYGEGIKQG  233 (397)
T ss_pred             CCCCCCCccEec
Confidence            999999999853

>PRK14285 chaperone protein DnaJ; Provisional

Probab=98.88  E-value=1.7e-09  Score=95.08  Aligned_cols=75  Identities=31%  Similarity=0.640  Sum_probs=59.7

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      ++..-||+++.-..+    .+.+.|..|+|+|.      .+|+.|+|+|++.....+   + +.+++|+.|.|+|.+   
T Consensus       125 ~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~---~-~~~~~C~~C~G~G~~~~~  200 (365)
T PRK14285        125 QIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGF---F-RVTTTCPKCYGNGKIISN  200 (365)
T ss_pred             EEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCce---e-EEeeecCCCCCcccccCC
Confidence            444456777765555    57889999999996      579999999998764332   2 457899999999998   


Q ss_pred             eCCCCCceeEEe
Q 031467          138 CCSDCKGTGFRA  149 (159)
Q Consensus       138 ~C~~C~GtG~v~  149 (159)
                      +|+.|+|.|.+.
T Consensus       201 ~C~~C~G~g~v~  212 (365)
T PRK14285        201 PCKSCKGKGSLK  212 (365)
T ss_pred             CCCCCCCCCEEe
Confidence            999999999875

>PRK14297 chaperone protein DnaJ; Provisional

Probab=98.87  E-value=2.1e-09  Score=94.74  Aligned_cols=79  Identities=30%  Similarity=0.569  Sum_probs=60.4

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||++..-..+    .+.+.|..|+|+|.      .+|+.|+|+|++....+......+...+|+.|+|+|.+   
T Consensus       127 ~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~  206 (380)
T PRK14297        127 TINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIED  206 (380)
T ss_pred             EEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCC
Confidence            344446666655544    57889999999996      57999999999876554332233567899999999998   


Q ss_pred             eCCCCCceeEEe
Q 031467          138 CCSDCKGTGFRA  149 (159)
Q Consensus       138 ~C~~C~GtG~v~  149 (159)
                      +|..|+|.|.+.
T Consensus       207 ~C~~C~G~g~v~  218 (380)
T PRK14297        207 PCNKCHGKGKVR  218 (380)
T ss_pred             CCCCCCCCeEEE
Confidence            999999999764

>PRK14286 chaperone protein DnaJ; Provisional

Probab=98.86  E-value=2.4e-09  Score=94.40  Aligned_cols=75  Identities=37%  Similarity=0.710  Sum_probs=59.1

Q ss_pred             HHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---e
Q 031467           72 FVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---C  138 (159)
Q Consensus        72 ~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~  138 (159)
                      +..-||++..-..+    .+.+.|..|+|+|.      .+|+.|+|+|++.....+   + +...+|+.|.|+|++   +
T Consensus       130 l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~---~-~~~~~C~~C~G~G~~~~~~  205 (372)
T PRK14286        130 LEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGF---F-SVATTCPTCRGKGTVISNP  205 (372)
T ss_pred             EEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEece---E-EEEEeCCCCCceeeEeccc
Confidence            33445677655555    67889999999996      679999999998655322   1 456799999999998   9


Q ss_pred             CCCCCceeEEee
Q 031467          139 CSDCKGTGFRAK  150 (159)
Q Consensus       139 C~~C~GtG~v~k  150 (159)
                      |+.|+|.|.+.+
T Consensus       206 C~~C~G~g~~~~  217 (372)
T PRK14286        206 CKTCGGQGLQEK  217 (372)
T ss_pred             CCCCCCCcEEec
Confidence            999999999863

>PRK14287 chaperone protein DnaJ; Provisional

Probab=98.86  E-value=2.1e-09  Score=94.71  Aligned_cols=79  Identities=24%  Similarity=0.589  Sum_probs=60.3

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||++..-..+    .+.+.|..|+|+|.      .+|+.|+|+|++....+......+..++|+.|.|+|++   
T Consensus       117 ~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~  196 (371)
T PRK14287        117 TMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQ  196 (371)
T ss_pred             EEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccc
Confidence            333445666554444    57889999999995      57999999999876655433332457899999999998   


Q ss_pred             eCCCCCceeEEe
Q 031467          138 CCSDCKGTGFRA  149 (159)
Q Consensus       138 ~C~~C~GtG~v~  149 (159)
                      +|+.|+|.|.+.
T Consensus       197 ~C~~C~G~g~v~  208 (371)
T PRK14287        197 KCATCGGKGKVR  208 (371)
T ss_pred             cCCCCCCeeEEe
Confidence            899999999875

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=98.85  E-value=3e-09  Score=95.79  Aligned_cols=80  Identities=28%  Similarity=0.682  Sum_probs=60.2

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-----ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee----
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV----  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i----  137 (159)
                      ++..-||++..-..+    .+.+.|..|+|+|.     .+|+.|+|+|++....++...+.+...+|+.|+|+|.+    
T Consensus       129 ~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~  208 (421)
T PTZ00037        129 HLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES  208 (421)
T ss_pred             EeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc
Confidence            455556776655544    57889999999996     57999999998654443221222457899999999997    


Q ss_pred             -eCCCCCceeEEee
Q 031467          138 -CCSDCKGTGFRAK  150 (159)
Q Consensus       138 -~C~~C~GtG~v~k  150 (159)
                       +|+.|+|.|++..
T Consensus       209 ~~C~~C~G~g~v~~  222 (421)
T PTZ00037        209 KKCKNCSGKGVKKT  222 (421)
T ss_pred             ccCCcCCCcceeee
Confidence             6999999999863

>PRK14300 chaperone protein DnaJ; Provisional

Probab=98.85  E-value=3.2e-09  Score=93.43  Aligned_cols=76  Identities=26%  Similarity=0.664  Sum_probs=59.0

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||+++.-..+    .+.+.|..|+|+|.      .+|+.|+|+|++.....++    +...+|+.|.|+|.+   
T Consensus       124 ~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~----~~~~~C~~C~G~G~~~~~  199 (372)
T PRK14300        124 NLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFF----TIEQACHKCQGNGQIIKN  199 (372)
T ss_pred             EEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceE----EEEEeCCCCCccceEeCC
Confidence            333445677665555    57899999999995      6799999999986543221    356799999999998   


Q ss_pred             eCCCCCceeEEee
Q 031467          138 CCSDCKGTGFRAK  150 (159)
Q Consensus       138 ~C~~C~GtG~v~k  150 (159)
                      +|++|+|.|++..
T Consensus       200 ~C~~C~G~g~v~~  212 (372)
T PRK14300        200 PCKKCHGMGRYHK  212 (372)
T ss_pred             CCCCCCCceEEEe
Confidence            9999999999853

>PRK14284 chaperone protein DnaJ; Provisional

Probab=98.83  E-value=2.7e-09  Score=94.49  Aligned_cols=75  Identities=29%  Similarity=0.591  Sum_probs=58.6

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||++..-..+    .+.+.|..|+|+|.      ++|+.|+|+|++.....+   + +...+|+.|+|+|.+   
T Consensus       137 ~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~---~-~~~~~C~~C~G~G~~~~~  212 (391)
T PRK14284        137 HITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGF---F-SMASTCPECGGEGRVITD  212 (391)
T ss_pred             EEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEece---E-EEEEECCCCCCCCcccCC
Confidence            444446777655555    57889999999996      579999999998654322   1 456799999999997   


Q ss_pred             eCCCCCceeEEe
Q 031467          138 CCSDCKGTGFRA  149 (159)
Q Consensus       138 ~C~~C~GtG~v~  149 (159)
                      +|+.|+|.|++.
T Consensus       213 ~C~~C~G~g~v~  224 (391)
T PRK14284        213 PCSVCRGQGRIK  224 (391)
T ss_pred             cCCCCCCcceec
Confidence            999999999984

>PRK10767 chaperone protein DnaJ; Provisional

Probab=98.82  E-value=4.4e-09  Score=92.20  Aligned_cols=75  Identities=28%  Similarity=0.658  Sum_probs=58.4

Q ss_pred             HHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---e
Q 031467           72 FVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---C  138 (159)
Q Consensus        72 ~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~  138 (159)
                      +..-||+++.-..+    .+.+.|..|+|+|.      ..|+.|+|+|++.....++    +...+|+.|.|+|++   .
T Consensus       122 l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~----~~~~~C~~C~G~G~~~~~~  197 (371)
T PRK10767        122 MEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFF----TVQQTCPTCHGRGKIIKDP  197 (371)
T ss_pred             EEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceE----EEEEeCCCCCCceeECCCC
Confidence            33445677655444    57889999999996      4799999999986554321    356799999999998   9


Q ss_pred             CCCCCceeEEee
Q 031467          139 CSDCKGTGFRAK  150 (159)
Q Consensus       139 C~~C~GtG~v~k  150 (159)
                      |+.|+|.|.+..
T Consensus       198 C~~C~G~g~v~~  209 (371)
T PRK10767        198 CKKCHGQGRVEK  209 (371)
T ss_pred             CCCCCCCceEee
Confidence            999999998853

>PRK14288 chaperone protein DnaJ; Provisional

Probab=98.82  E-value=3.6e-09  Score=93.17  Aligned_cols=76  Identities=29%  Similarity=0.635  Sum_probs=59.1

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-----ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---e
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---C  138 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~  138 (159)
                      .+..-||++..-..+    .+.+.|..|+|+|.     .+|+.|+|+|++.....++    +..++|+.|.|+|.+   +
T Consensus       119 ~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~----~~~~~C~~C~G~G~~~~~~  194 (369)
T PRK14288        119 TIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFM----SFAQTCGACQGKGKIIKTP  194 (369)
T ss_pred             eccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceE----EEEEecCCCCCCceEcccc
Confidence            455556777655444    46789999999996     5799999999986554322    455799999999987   9


Q ss_pred             CCCCCceeEEee
Q 031467          139 CSDCKGTGFRAK  150 (159)
Q Consensus       139 C~~C~GtG~v~k  150 (159)
                      |+.|+|.|++.+
T Consensus       195 C~~C~G~g~v~~  206 (369)
T PRK14288        195 CQACKGKTYILK  206 (369)
T ss_pred             CccCCCcceEEE
Confidence            999999998854

>PRK14301 chaperone protein DnaJ; Provisional

Probab=98.82  E-value=2.8e-09  Score=94.00  Aligned_cols=76  Identities=29%  Similarity=0.700  Sum_probs=60.2

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||+++.-..+    .+.+.|..|+|+|.      .+|+.|+|+|++.....+   + +...+|+.|.|+|++   
T Consensus       123 ~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~---~-~~~~~C~~C~G~G~~~~~  198 (373)
T PRK14301        123 NLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGF---F-QIAVPCPVCRGEGRVITH  198 (373)
T ss_pred             EEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeee---E-EEEEeCCCCCceeeecCC
Confidence            455567777765554    57889999999996      579999999998654322   1 457899999999998   


Q ss_pred             eCCCCCceeEEee
Q 031467          138 CCSDCKGTGFRAK  150 (159)
Q Consensus       138 ~C~~C~GtG~v~k  150 (159)
                      .|+.|+|.|.+..
T Consensus       199 ~C~~C~G~g~v~~  211 (373)
T PRK14301        199 PCPKCKGSGIVQQ  211 (373)
T ss_pred             CCCCCCCCceecc
Confidence            9999999999853

>PRK14295 chaperone protein DnaJ; Provisional

Probab=98.80  E-value=4.9e-09  Score=93.02  Aligned_cols=76  Identities=25%  Similarity=0.500  Sum_probs=59.9

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||+++.-..+    .+.+.|..|+|+|.      .+|+.|+|+|++.....   .+ +.+.+|+.|.|+|++   
T Consensus       145 ~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g---~~-~~~~~C~~C~G~G~~~~~  220 (389)
T PRK14295        145 EVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSG---GF-SLSEPCPDCKGRGLIADD  220 (389)
T ss_pred             EEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEec---ce-EEEEecCCCcceeEEecc
Confidence            444456777765555    57889999999996      57999999999865432   12 456799999999998   


Q ss_pred             eCCCCCceeEEee
Q 031467          138 CCSDCKGTGFRAK  150 (159)
Q Consensus       138 ~C~~C~GtG~v~k  150 (159)
                      +|+.|+|.|++..
T Consensus       221 ~C~~C~G~g~~~~  233 (389)
T PRK14295        221 PCLVCKGSGRAKS  233 (389)
T ss_pred             CCCCCCCCceEee
Confidence            8999999998854

>PRK14283 chaperone protein DnaJ; Provisional

Probab=98.79  E-value=5.4e-09  Score=92.09  Aligned_cols=80  Identities=28%  Similarity=0.498  Sum_probs=61.8

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      ++..-||+++.-..+    .+.+.|..|+|+|.      ..|+.|+|+|.+....++.....+...+|+.|.|+|.+   
T Consensus       125 ~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~  204 (378)
T PRK14283        125 EVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEK  204 (378)
T ss_pred             EeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCC
Confidence            444556777766555    56789999999996      57999999999876554322222456899999999998   


Q ss_pred             eCCCCCceeEEee
Q 031467          138 CCSDCKGTGFRAK  150 (159)
Q Consensus       138 ~C~~C~GtG~v~k  150 (159)
                      +|..|+|.|.+..
T Consensus       205 ~C~~C~G~g~v~~  217 (378)
T PRK14283        205 PCSNCHGKGVVRE  217 (378)
T ss_pred             CCCCCCCceeecc
Confidence            9999999998743

>PRK14289 chaperone protein DnaJ; Provisional

Probab=98.79  E-value=4.5e-09  Score=92.68  Aligned_cols=79  Identities=24%  Similarity=0.529  Sum_probs=60.1

Q ss_pred             HHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---e
Q 031467           72 FVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---C  138 (159)
Q Consensus        72 ~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~  138 (159)
                      +..-||++..-..+    .+.+.|..|+|+|.      ..|+.|+|+|++....+......+...+|+.|.|+|.+   .
T Consensus       134 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~  213 (386)
T PRK14289        134 VKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKK  213 (386)
T ss_pred             EEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcC
Confidence            33345666655444    67889999999996      57999999999876554322222457899999999997   9


Q ss_pred             CCCCCceeEEee
Q 031467          139 CSDCKGTGFRAK  150 (159)
Q Consensus       139 C~~C~GtG~v~k  150 (159)
                      |+.|+|.|++..
T Consensus       214 C~~C~G~g~v~~  225 (386)
T PRK14289        214 CKKCGGEGIVYG  225 (386)
T ss_pred             CCCCCCCcEEee
Confidence            999999998753

>PRK14293 chaperone protein DnaJ; Provisional

Probab=98.79  E-value=5e-09  Score=92.19  Aligned_cols=80  Identities=23%  Similarity=0.555  Sum_probs=60.9

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||+++.=..+    .+.+.|..|+|+|.      .+|+.|+|+|++....++.....+...+|+.|.|+|++   
T Consensus       122 ~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~  201 (374)
T PRK14293        122 DLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIED  201 (374)
T ss_pred             EEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEecc
Confidence            444456777665544    67899999999996      46999999999865544322222456899999999998   


Q ss_pred             eCCCCCceeEEee
Q 031467          138 CCSDCKGTGFRAK  150 (159)
Q Consensus       138 ~C~~C~GtG~v~k  150 (159)
                      +|..|+|.|++.+
T Consensus       202 ~C~~C~G~g~v~~  214 (374)
T PRK14293        202 PCDACGGQGVKQV  214 (374)
T ss_pred             CCCCCCCCccccc
Confidence            9999999998754

>PRK14291 chaperone protein DnaJ; Provisional

Probab=98.78  E-value=6.5e-09  Score=91.81  Aligned_cols=75  Identities=31%  Similarity=0.644  Sum_probs=58.3

Q ss_pred             HHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee--eC
Q 031467           72 FVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--CC  139 (159)
Q Consensus        72 ~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--~C  139 (159)
                      +..-||+++.-..+    .+.+.|..|+|+|.      .+|+.|+|+|++.....+    .+..++|+.|.|+|.+  +|
T Consensus       136 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~----~~~~~~C~~C~G~G~~~~~C  211 (382)
T PRK14291        136 VEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGF----FRISQTCPTCGGEGVLREPC  211 (382)
T ss_pred             EEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecce----EEEEecCCCCCCceEEccCC
Confidence            33346677655554    67889999999995      579999999998654321    1456899999999977  99


Q ss_pred             CCCCceeEEee
Q 031467          140 SDCKGTGFRAK  150 (159)
Q Consensus       140 ~~C~GtG~v~k  150 (159)
                      +.|+|.|++..
T Consensus       212 ~~C~G~g~v~~  222 (382)
T PRK14291        212 SKCNGRGLVIK  222 (382)
T ss_pred             CCCCCCceEEe
Confidence            99999998854

>PRK14294 chaperone protein DnaJ; Provisional

Probab=98.76  E-value=4.7e-09  Score=92.13  Aligned_cols=76  Identities=26%  Similarity=0.578  Sum_probs=59.5

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---  137 (159)
                      .+..-||+++.-..+    .+.+.|..|+|+|.      ++|+.|+|+|.+.....+   + +..++|+.|.|+|++   
T Consensus       123 ~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~---~-~~~~~C~~C~G~G~~~~~  198 (366)
T PRK14294        123 DLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGF---F-SIRTTCPRCRGMGKVIVS  198 (366)
T ss_pred             EEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeee---E-EEEeeCCCCCCcCeecCc
Confidence            455556777665544    57889999999996      479999999998643322   1 457899999999998   


Q ss_pred             eCCCCCceeEEee
Q 031467          138 CCSDCKGTGFRAK  150 (159)
Q Consensus       138 ~C~~C~GtG~v~k  150 (159)
                      .|+.|+|.|.+..
T Consensus       199 ~C~~C~G~g~v~~  211 (366)
T PRK14294        199 PCKTCHGQGRVRV  211 (366)
T ss_pred             CCCCCCCceEeec
Confidence            9999999999853

>PRK14290 chaperone protein DnaJ; Provisional

Probab=98.75  E-value=8.8e-09  Score=90.38  Aligned_cols=80  Identities=30%  Similarity=0.570  Sum_probs=59.2

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-----ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---e
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---C  138 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~  138 (159)
                      .+..-||++..-..+    .+.+.|..|+|+|.     ..|+.|+|+|++...........+..++|+.|.|+|.+   +
T Consensus       128 ~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~  207 (365)
T PRK14290        128 NLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEK  207 (365)
T ss_pred             EEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCC
Confidence            444556666644433    56789999999996     57999999998765543211111345799999999988   9


Q ss_pred             CCCCCceeEEee
Q 031467          139 CSDCKGTGFRAK  150 (159)
Q Consensus       139 C~~C~GtG~v~k  150 (159)
                      |+.|+|.|++..
T Consensus       208 C~~C~G~g~v~~  219 (365)
T PRK14290        208 CPRCNGTGTVVV  219 (365)
T ss_pred             CCCCCCceeEEE
Confidence            999999999864

>PRK14292 chaperone protein DnaJ; Provisional

Probab=98.71  E-value=1.1e-08  Score=89.75  Aligned_cols=80  Identities=25%  Similarity=0.507  Sum_probs=60.3

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee--
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV--  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i--  137 (159)
                      .+..-||++++-..+    .+.+.|..|+|+|.       .+|+.|+|+|.+....+......+...+|+.|.|.|.+  
T Consensus       118 ~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~  197 (371)
T PRK14292        118 EARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT  197 (371)
T ss_pred             EEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC
Confidence            444456777655444    56789999999995       57999999999875544322222457899999999998  


Q ss_pred             -eCCCCCceeEEee
Q 031467          138 -CCSDCKGTGFRAK  150 (159)
Q Consensus       138 -~C~~C~GtG~v~k  150 (159)
                       +|+.|+|.|++..
T Consensus       198 ~~C~~C~G~g~v~~  211 (371)
T PRK14292        198 DPCTVCRGRGRTLK  211 (371)
T ss_pred             CCCCCCCCceEEee
Confidence             9999999998853

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.3e-08  Score=90.54  Aligned_cols=113  Identities=19%  Similarity=0.344  Sum_probs=77.3

Q ss_pred             cEEecccCeeeeeccceeecccccccccCcccc--chHHHH-HH-HHhhhcCCC-------------------CCccCCC
Q 031467           37 MRVVPRGTSITSTRRSVCGVGVRASVVDSYESS--SNFVKR-ME-QAWLISQQP-------------------RPVSCSS   93 (159)
Q Consensus        37 ~~~~~~~~~~~~~~~~l~~~r~~A~~~~~~d~~--~~~~~~-~e-~aw~i~~~~-------------------r~~~C~~   93 (159)
                      |.-+...|++.|.|...+|-|.- +.+--|=+.  .|=+++ ++ ..|.+++..                   -.+.|..
T Consensus       114 i~~~e~~~~~~~~l~tfveer~~-~~q~~PfT~~~~dG~~hg~~prlw~~d~~~~gp~mf~~~~~~~~vphs~~v~~ch~  192 (406)
T KOG2813|consen  114 IWDFEVMPGHLFVLQTFVEERPG-SSQINPFTACNSDGTIHGFHPRLWGTDKCSRGPGMFSGVAHPAVVPHSMIVTFCHA  192 (406)
T ss_pred             ceehhcCcceEEeeeeeeccccc-cceecccccCCcCCcccccCccccccccccCCCCcccccccceeccchHhhhhhhc
Confidence            34455669999999888886543 333333333  122222 23 568888772                   2468999


Q ss_pred             CCCCCcccCCCCCcccEEee-------------------ccc---ccccCCCCceEcCCCCccceeeCCCCCceeEEeec
Q 031467           94 CNSNGHIDCKWCAGTGFFIL-------------------GDN---MLCQVPSRNTTCVICAGKGSVCCSDCKGTGFRAKW  151 (159)
Q Consensus        94 C~GsG~~~C~~C~GtG~i~~-------------------~~~---~~~~~~~~~~tCp~C~G~G~i~C~~C~GtG~v~kw  151 (159)
                      |+|.|+..|+.|+|+|....                   +..   .+|.+ ++..+|+.|+|+|+++|.+|.|+|.+..+
T Consensus       193 c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G-~G~~~C~tC~grG~k~C~TC~gtgsll~~  271 (406)
T KOG2813|consen  193 CLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHG-RGIKECHTCKGRGKKPCTTCSGTGSLLNY  271 (406)
T ss_pred             ccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccC-CCcccCCcccCCCCcccccccCccceeee
Confidence            99999999999999994321                   111   23444 67789999999999999999999987643

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=98.62  E-value=2.3e-08  Score=94.25  Aligned_cols=64  Identities=34%  Similarity=0.678  Sum_probs=50.2

Q ss_pred             CccCCCCCCCCc-----ccCCCCCcccEEeeccc-----c---cc-cCCCCceEcCCCCcccee----eCCCCCceeEEe
Q 031467           88 PVSCSSCNSNGH-----IDCKWCAGTGFFILGDN-----M---LC-QVPSRNTTCVICAGKGSV----CCSDCKGTGFRA  149 (159)
Q Consensus        88 ~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~-----~---~~-~~~~~~~tCp~C~G~G~i----~C~~C~GtG~v~  149 (159)
                      ...|+.|+|+|.     ++|+.|+|+|++...+-     +   .. ...+...+|+.|+|+|.+    +|+.|.|+|++.
T Consensus         2 ~~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~   81 (715)
T COG1107           2 IKKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL   81 (715)
T ss_pred             CccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence            468999999996     57999999999843221     0   00 112446799999999998    999999999999


Q ss_pred             ec
Q 031467          150 KW  151 (159)
Q Consensus       150 kw  151 (159)
                      .|
T Consensus        82 ~c   83 (715)
T COG1107          82 TC   83 (715)
T ss_pred             ee
Confidence            88

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=5.2e-06  Score=73.74  Aligned_cols=79  Identities=25%  Similarity=0.536  Sum_probs=63.7

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-----ccCCCCCcccEEeecccccc-cCCCCceEcCCCCcccee---
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLC-QVPSRNTTCVICAGKGSV---  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~~~~-~~~~~~~tCp~C~G~G~i---  137 (159)
                      ++..-||..+.-+..    .++..|+.|+|+|.     ..|..|.|+|......++.. .+.+.+..|..|.|.|..   
T Consensus       106 ~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~  185 (337)
T KOG0712|consen  106 QLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISL  185 (337)
T ss_pred             EEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccc
Confidence            555567777776444    68899999999996     46999999999876666433 445678999999999997   


Q ss_pred             --eCCCCCceeEEe
Q 031467          138 --CCSDCKGTGFRA  149 (159)
Q Consensus       138 --~C~~C~GtG~v~  149 (159)
                        .|++|.|.+++.
T Consensus       186 kd~C~~C~G~~~v~  199 (337)
T KOG0712|consen  186 KDRCKTCSGAKVVR  199 (337)
T ss_pred             cccCcccccchhhh
Confidence              999999999876

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.95  E-value=1.1e-05  Score=55.37  Aligned_cols=39  Identities=41%  Similarity=0.800  Sum_probs=28.6

Q ss_pred             CCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467          102 CKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA  149 (159)
Q Consensus       102 C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~  149 (159)
                      |+.|+|+|....         ....+|+.|+|+|.+               +|+.|+|+|++.
T Consensus         1 C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i   54 (66)
T PF00684_consen    1 CPKCNGTGAKPG---------KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII   54 (66)
T ss_dssp             -CCCTTTSB-ST---------TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred             CCcCCCcccCCC---------CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence            899999998421         345789999999987               899999999995

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.0001  Score=66.43  Aligned_cols=39  Identities=44%  Similarity=0.997  Sum_probs=34.0

Q ss_pred             CCccCCCCCCCCc-------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           87 RPVSCSSCNSNGH-------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        87 r~~~C~~C~GsG~-------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      .+++|++|+|+|.             ++|+.|+|+|.+.            ..+|+.|+|.|.+
T Consensus       158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i------------~~pC~~C~G~G~v  209 (371)
T COG0484         158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII------------KDPCGKCKGKGRV  209 (371)
T ss_pred             CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC------------CCCCCCCCCCCeE
Confidence            7899999999995             4799999999963            2479999999986

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=97.16  E-value=0.00034  Score=53.57  Aligned_cols=34  Identities=35%  Similarity=0.860  Sum_probs=26.9

Q ss_pred             ccCCCCCCCCc------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           89 VSCSSCNSNGH------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        89 ~~C~~C~GsG~------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      ..|..|+|+|.            .+|+.|+|+|++               .|+.|.|+|.+
T Consensus        53 ~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---------------~C~~C~G~G~~   98 (111)
T PLN03165         53 QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---------------TCTTCQGSGIQ   98 (111)
T ss_pred             cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---------------eCCCCCCCEEE
Confidence            48999999985            368888888862               39999998876

>PRK14279 chaperone protein DnaJ; Provisional

Probab=97.09  E-value=0.00043  Score=61.78  Aligned_cols=41  Identities=34%  Similarity=0.766  Sum_probs=30.9

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         ....+|+.|+|+|.+           +|+.|+|+|++.
T Consensus       174 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i  225 (392)
T PRK14279        174 APCTTCHGSGARPG---------TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII  225 (392)
T ss_pred             ccCCCCccccccCC---------CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe
Confidence            46999999987421         123579999999875           799999999874

>PRK14296 chaperone protein DnaJ; Provisional

Probab=97.03  E-value=0.00051  Score=60.94  Aligned_cols=41  Identities=34%  Similarity=0.660  Sum_probs=30.3

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         ....+|+.|+|+|.+               +|+.|+|+|++.
T Consensus       150 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~  205 (372)
T PRK14296        150 TNCSKCFGSGAESN---------SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII  205 (372)
T ss_pred             eccCCCCCCccCCC---------CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee
Confidence            46999999987311         223579999999864               699999999874

>PRK14284 chaperone protein DnaJ; Provisional

Probab=97.03  E-value=0.00047  Score=61.35  Aligned_cols=41  Identities=32%  Similarity=0.708  Sum_probs=31.9

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         ....+|+.|.|+|.+           +|+.|+|+|++.
T Consensus       159 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~  210 (391)
T PRK14284        159 KSCDACSGSGANSS---------QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI  210 (391)
T ss_pred             ccCCCCcccccCCC---------CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc
Confidence            56999999997311         234679999999983           899999999873

>PRK10767 chaperone protein DnaJ; Provisional

Probab=96.96  E-value=0.00073  Score=59.51  Aligned_cols=41  Identities=34%  Similarity=0.761  Sum_probs=31.5

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         .....|+.|+|+|.+           +|+.|+|+|++.
T Consensus       143 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  194 (371)
T PRK10767        143 VTCDTCHGSGAKPG---------TSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII  194 (371)
T ss_pred             ccCCCCCCcccCCC---------CCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC
Confidence            46999999987421         223579999999975           599999999874

>PRK14282 chaperone protein DnaJ; Provisional

Probab=96.91  E-value=0.00079  Score=59.45  Aligned_cols=41  Identities=39%  Similarity=0.754  Sum_probs=30.7

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         ....+|+.|.|+|.+               +|+.|+|+|++.
T Consensus       153 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  208 (369)
T PRK14282        153 ETCPHCGGTGVEPG---------SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP  208 (369)
T ss_pred             ccCCCCCccCCCCC---------CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC
Confidence            46999999987311         223579999999864               699999999874

>PRK14298 chaperone protein DnaJ; Provisional

Probab=96.90  E-value=0.00066  Score=60.31  Aligned_cols=39  Identities=36%  Similarity=0.998  Sum_probs=32.1

Q ss_pred             CCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           87 RPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        87 r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      .+..|+.|+|+|.               .+|+.|+|+|++.            ..+|+.|.|+|.+
T Consensus       157 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v  210 (377)
T PRK14298        157 SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI------------ESPCPVCSGTGKV  210 (377)
T ss_pred             CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc------------CCCCCCCCCccEE
Confidence            4578999999995               3699999999852            2359999999986

>PRK14300 chaperone protein DnaJ; Provisional

Probab=96.88  E-value=0.00055  Score=60.54  Aligned_cols=23  Identities=43%  Similarity=1.042  Sum_probs=12.5

Q ss_pred             eEcCCCCcccee-----------eCCCCCceeEE
Q 031467          126 TTCVICAGKGSV-----------CCSDCKGTGFR  148 (159)
Q Consensus       126 ~tCp~C~G~G~i-----------~C~~C~GtG~v  148 (159)
                      .+|+.|+|+|.+           +|+.|+|+|++
T Consensus       163 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~  196 (372)
T PRK14300        163 TTCDACSGVGATRMQQGFFTIEQACHKCQGNGQI  196 (372)
T ss_pred             ccCCCccCeEEEEEeeceEEEEEeCCCCCccceE
Confidence            345555555543           45555555555

>PRK14301 chaperone protein DnaJ; Provisional

Probab=96.88  E-value=0.00085  Score=59.48  Aligned_cols=41  Identities=34%  Similarity=0.741  Sum_probs=31.8

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         ....+|+.|+|+|.+           +|+.|+|+|++.
T Consensus       145 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~  196 (373)
T PRK14301        145 VTCDDCGGSGAAPG---------TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI  196 (373)
T ss_pred             ccCCCCCCcccCCC---------CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec
Confidence            46999999988411         223579999999964           799999999874

>PRK14286 chaperone protein DnaJ; Provisional

Probab=96.88  E-value=0.0009  Score=59.30  Aligned_cols=41  Identities=37%  Similarity=0.742  Sum_probs=28.0

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         ....+|+.|+|+|.+           +|+.|+|+|++.
T Consensus       151 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~  202 (372)
T PRK14286        151 ESCVDCNGSGASKG---------SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI  202 (372)
T ss_pred             ccCCCCcCCCcCCC---------CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe
Confidence            45888888886311         123568888888854           688888888774

>PRK14276 chaperone protein DnaJ; Provisional

Probab=96.83  E-value=0.00078  Score=59.76  Aligned_cols=41  Identities=34%  Similarity=0.723  Sum_probs=31.1

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         ....+|+.|.|+|.+               +|+.|+|+|++.
T Consensus       147 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  202 (380)
T PRK14276        147 ATCHTCNGSGAKPG---------TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI  202 (380)
T ss_pred             ccCCCCcCcccCCC---------CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc
Confidence            46999999987311         223579999999864               699999999874

>PRK14285 chaperone protein DnaJ; Provisional

Probab=96.82  E-value=0.00085  Score=59.33  Aligned_cols=10  Identities=40%  Similarity=0.903  Sum_probs=5.5

Q ss_pred             cCCCCCcccE
Q 031467          101 DCKWCAGTGF  110 (159)
Q Consensus       101 ~C~~C~GtG~  110 (159)
                      +|+.|+|+|+
T Consensus       187 ~C~~C~G~G~  196 (365)
T PRK14285        187 TCPKCYGNGK  196 (365)
T ss_pred             ecCCCCCccc
Confidence            4555555555

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.79  E-value=0.00081  Score=64.23  Aligned_cols=23  Identities=35%  Similarity=0.999  Sum_probs=11.8

Q ss_pred             ccCCCCCCCCcc----cCCCCCcccEE
Q 031467           89 VSCSSCNSNGHI----DCKWCAGTGFF  111 (159)
Q Consensus        89 ~~C~~C~GsG~~----~C~~C~GtG~i  111 (159)
                      ++|..|+|+|.+    +|+.|+|+|.+
T Consensus        54 ~pc~~c~gkG~V~v~~~c~~c~G~gkv   80 (715)
T COG1107          54 IPCPKCRGKGTVTVYDTCPECGGTGKV   80 (715)
T ss_pred             CCCCeeccceeEEEEeecccCCCceeE
Confidence            455555555542    35555555554

>PRK14297 chaperone protein DnaJ; Provisional

Probab=96.76  E-value=0.0011  Score=58.76  Aligned_cols=41  Identities=34%  Similarity=0.749  Sum_probs=32.6

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         ....+|+.|.|+|.+               +|+.|+|+|++.
T Consensus       149 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  204 (380)
T PRK14297        149 ENCETCNGTGAKPG---------TSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI  204 (380)
T ss_pred             ccCCCcccccccCC---------CcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc
Confidence            46999999998411         224679999999864               799999999884

>PRK14295 chaperone protein DnaJ; Provisional

Probab=96.75  E-value=0.0012  Score=58.80  Aligned_cols=41  Identities=41%  Similarity=0.839  Sum_probs=31.0

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         ....+|+.|.|+|.+           +|+.|+|+|++.
T Consensus       167 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  218 (389)
T PRK14295        167 APCPACSGTGAKNG---------TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA  218 (389)
T ss_pred             ccCCCCcccccCCC---------CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe
Confidence            46999999987421         223579999999863           799999999873

>PRK14278 chaperone protein DnaJ; Provisional

Probab=96.75  E-value=0.00086  Score=59.54  Aligned_cols=39  Identities=41%  Similarity=0.971  Sum_probs=32.2

Q ss_pred             CCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           87 RPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        87 r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      .+..|+.|+|+|.               .+|+.|+|+|++.            ..+|+.|.|+|.+
T Consensus       155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v  208 (378)
T PRK14278        155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI------------PDPCHECAGDGRV  208 (378)
T ss_pred             CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee------------CCCCCCCCCceeE
Confidence            4678999999995               3699999999962            1359999999975

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=96.72  E-value=0.002  Score=50.92  Aligned_cols=63  Identities=17%  Similarity=0.405  Sum_probs=44.4

Q ss_pred             hHHHHHHHHhhhcCCCCCccCCCCCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCCccceeeC
Q 031467           71 NFVKRMEQAWLISQQPRPVSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCC  139 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~~r~~~C~~C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i~C  139 (159)
                      .|.+.++.+   ........|..|.|.+-+.|..|+|+=++...+..   ......+|+.|+=-|.+.|
T Consensus        85 ~L~~lL~~~---~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~---~~~~~~rC~~Cnengl~~c  147 (147)
T cd03031          85 ELRKLLKGI---RARAGGGVCEGCGGARFVPCSECNGSCKVFAENAT---AAGGFLRCPECNENGLVRC  147 (147)
T ss_pred             CHHHHHhhc---ccccCCCCCCCCCCcCeEECCCCCCcceEEeccCc---ccccEEECCCCCccccccC
Confidence            455555544   12233457999999999999999999988654421   1134578999998888876

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=96.70  E-value=0.0017  Score=58.92  Aligned_cols=42  Identities=36%  Similarity=0.744  Sum_probs=33.5

Q ss_pred             CCCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           86 PRPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        86 ~r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      ..+..|+.|+|+|.               .+|+.|+|+|++...          ..+|+.|.|+|.+
T Consensus       164 ~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~----------~~~C~~C~G~g~v  220 (421)
T PTZ00037        164 DAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE----------SKKCKNCSGKGVK  220 (421)
T ss_pred             CCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc----------cccCCcCCCccee
Confidence            35678999999994               379999999996321          2469999999976

>PRK14288 chaperone protein DnaJ; Provisional

Probab=96.67  E-value=0.0013  Score=58.27  Aligned_cols=22  Identities=45%  Similarity=1.084  Sum_probs=12.3

Q ss_pred             EcCCCCcccee-----------eCCCCCceeEE
Q 031467          127 TCVICAGKGSV-----------CCSDCKGTGFR  148 (159)
Q Consensus       127 tCp~C~G~G~i-----------~C~~C~GtG~v  148 (159)
                      +|+.|.|+|.+           +|+.|+|+|++
T Consensus       158 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~  190 (369)
T PRK14288        158 TCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKI  190 (369)
T ss_pred             CCCCCCCCcEEEEEeceEEEEEecCCCCCCceE
Confidence            46666665543           46666666554

>PRK14287 chaperone protein DnaJ; Provisional

Probab=96.66  E-value=0.0013  Score=58.34  Aligned_cols=41  Identities=34%  Similarity=0.747  Sum_probs=32.0

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         ....+|+.|+|+|.+               +|+.|+|+|++.
T Consensus       139 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  194 (371)
T PRK14287        139 ETCGTCHGSGAKPG---------TKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII  194 (371)
T ss_pred             ccCCCCCCcccCCC---------CCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc
Confidence            46999999997311         234679999999863               699999999874

>PRK14290 chaperone protein DnaJ; Provisional

Probab=96.66  E-value=0.0013  Score=58.00  Aligned_cols=39  Identities=31%  Similarity=0.920  Sum_probs=32.6

Q ss_pred             CCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           87 RPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        87 r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      ....|+.|+|+|.               .+|+.|+|+|++.            ..+|+.|.|+|.+
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v  217 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP------------EEKCPRCNGTGTV  217 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc------------cCCCCCCCCceeE
Confidence            5678999999994               4799999999962            2469999999986

>PRK14294 chaperone protein DnaJ; Provisional

Probab=96.65  E-value=0.0016  Score=57.38  Aligned_cols=41  Identities=37%  Similarity=0.759  Sum_probs=30.8

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         ....+|+.|+|+|.+           +|+.|+|+|++.
T Consensus       145 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~  196 (366)
T PRK14294        145 ETCEECHGSGCEPG---------TSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI  196 (366)
T ss_pred             ccCCCCCCccccCC---------CCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec
Confidence            46999999988421         123579999999864           799999999873

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.63  E-value=0.0013  Score=54.36  Aligned_cols=10  Identities=50%  Similarity=1.079  Sum_probs=4.5

Q ss_pred             CCCCCceeEE
Q 031467          139 CSDCKGTGFR  148 (159)
Q Consensus       139 C~~C~GtG~v  148 (159)
                      |+.|+|+|++
T Consensus       118 C~~C~G~G~v  127 (186)
T TIGR02642       118 CDTCAGTGRF  127 (186)
T ss_pred             CCCCCCccEE
Confidence            4444444444

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=96.61  E-value=0.0013  Score=58.26  Aligned_cols=40  Identities=33%  Similarity=0.872  Sum_probs=32.6

Q ss_pred             CCCccCCCCCCCCcc---------------cCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           86 PRPVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        86 ~r~~~C~~C~GsG~~---------------~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      .....|+.|+|+|.+               +|+.|+|+|++.            ...|+.|.|+|.+
T Consensus       169 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v  223 (386)
T PRK14289        169 NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII------------KKKCKKCGGEGIV  223 (386)
T ss_pred             CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc------------CcCCCCCCCCcEE
Confidence            456889999999863               699999999852            2459999999975

>PRK14291 chaperone protein DnaJ; Provisional

Probab=96.60  E-value=0.0018  Score=57.55  Aligned_cols=40  Identities=35%  Similarity=0.879  Sum_probs=29.1

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEE
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFR  148 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v  148 (159)
                      +.|..|+|+|....         ....+|+.|+|+|.+           +|+.|+|+|.+
T Consensus       157 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~  207 (382)
T PRK14291        157 VPCEACGGTGYDPG---------SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL  207 (382)
T ss_pred             ccCCCCccccCCCC---------CCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE
Confidence            46888998887311         224579999998864           79999999864

>PRK14280 chaperone protein DnaJ; Provisional

Probab=96.57  E-value=0.0012  Score=58.43  Aligned_cols=40  Identities=40%  Similarity=0.887  Sum_probs=32.1

Q ss_pred             CCCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           86 PRPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        86 ~r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      .....|..|+|+|.               .+|+.|+|+|.+.            ..+|+.|.|+|.+
T Consensus       158 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v  212 (376)
T PRK14280        158 TSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI------------KEKCPTCHGKGKV  212 (376)
T ss_pred             CCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee------------cCCCCCCCCceEE
Confidence            34678999999995               3699999999862            2359999999976

>PRK14293 chaperone protein DnaJ; Provisional

Probab=96.45  E-value=0.0031  Score=55.80  Aligned_cols=40  Identities=40%  Similarity=0.789  Sum_probs=32.1

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEE
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFR  148 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v  148 (159)
                      +.|+.|+|+|....         ....+|+.|.|+|.+               +|++|.|.|++
T Consensus       144 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  198 (374)
T PRK14293        144 ETCETCRGSGAKPG---------TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV  198 (374)
T ss_pred             ccCCCCCCcCCCCC---------CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeE
Confidence            57999999997321         234689999999974               69999999997

>PRK14277 chaperone protein DnaJ; Provisional

Probab=96.45  E-value=0.0018  Score=57.52  Aligned_cols=39  Identities=36%  Similarity=0.999  Sum_probs=32.2

Q ss_pred             CCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           87 RPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        87 r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      ....|..|+|+|.               .+|+.|+|+|++.            ..+|+.|.|+|.+
T Consensus       171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v  224 (386)
T PRK14277        171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII------------TDPCNKCGGTGRI  224 (386)
T ss_pred             CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec------------cCCCCCCCCCcEE
Confidence            4678999999985               3699999999962            1359999999986

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.0042  Score=54.35  Aligned_cols=51  Identities=24%  Similarity=0.538  Sum_probs=42.9

Q ss_pred             ccCCCCCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCCccceeeCCCCC
Q 031467           89 VSCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVCCSDCK  143 (159)
Q Consensus        89 ~~C~~C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i~C~~C~  143 (159)
                      -.|..|.|.+-+.|..|+|+-++..+..    ......+|+.|+=-|.+.|+.|.
T Consensus       230 ~~C~~CGg~rFlpC~~C~GS~kv~~~~~----~~~~~~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  230 GVCESCGGARFLPCSNCHGSCKVHEEEE----DDGGVLRCLECNENGLVRCPVCS  280 (281)
T ss_pred             CcCCCcCCcceEecCCCCCceeeeeecc----CCCcEEECcccCCCCceeCCccC
Confidence            6799999999999999999998866311    11456899999999999999995

>PRK14281 chaperone protein DnaJ; Provisional

Probab=96.44  E-value=0.0024  Score=57.08  Aligned_cols=39  Identities=28%  Similarity=0.810  Sum_probs=32.4

Q ss_pred             CCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           87 RPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        87 r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      .+..|..|+|+|.               .+|+.|+|+|++.            ..+|+.|.|+|.+
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v  231 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV------------KDRCPACYGEGIK  231 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee------------CCCCCCCCCCccE
Confidence            5678999999995               3699999999962            1359999999986

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=96.39  E-value=0.0022  Score=56.00  Aligned_cols=39  Identities=38%  Similarity=0.980  Sum_probs=32.3

Q ss_pred             CCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           87 RPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        87 r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      ....|..|+|+|.               .+|+.|+|+|++.            ...|+.|.|+|.+
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v  212 (354)
T TIGR02349       159 DPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII------------KEPCSTCKGKGRV  212 (354)
T ss_pred             CCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec------------CCCCCCCCCCcEe
Confidence            4678999999994               4799999999962            1359999999986

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14283 chaperone protein DnaJ; Provisional

Probab=96.39  E-value=0.0029  Score=56.03  Aligned_cols=41  Identities=37%  Similarity=0.727  Sum_probs=32.1

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---------------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---------------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---------------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         ....+|+.|.|+|.+               +|++|+|.|++.
T Consensus       147 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  202 (378)
T PRK14283        147 KKCPVCNGSRAEPG---------SEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV  202 (378)
T ss_pred             ccCCCCCccccCCC---------CCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec
Confidence            56999999997321         234679999999885               599999999884

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.0029  Score=57.04  Aligned_cols=34  Identities=35%  Similarity=0.955  Sum_probs=21.5

Q ss_pred             cCCCCCCCCcccCCCCCcccEEeecccccccCCCCceEcCCCCccceee
Q 031467           90 SCSSCNSNGHIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSVC  138 (159)
Q Consensus        90 ~C~~C~GsG~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i~  138 (159)
                      .|.-|+|+|..+|+.|.|.|               ..+|..|.|+|++.
T Consensus       236 ~C~~C~G~G~~~C~tC~grG---------------~k~C~TC~gtgsll  269 (406)
T KOG2813|consen  236 LCYMCHGRGIKECHTCKGRG---------------KKPCTTCSGTGSLL  269 (406)
T ss_pred             hhhhccCCCcccCCcccCCC---------------CcccccccCcccee
Confidence            44444444444555555444               46899999999873

>PRK14292 chaperone protein DnaJ; Provisional

Probab=96.03  E-value=0.0045  Score=54.55  Aligned_cols=38  Identities=34%  Similarity=1.021  Sum_probs=31.4

Q ss_pred             CccCCCCCCCCcc---------------cCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           88 PVSCSSCNSNGHI---------------DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        88 ~~~C~~C~GsG~~---------------~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      ...|..|+|+|.+               +|+.|+|+|+..            ...|+.|.|+|.+
T Consensus       157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v  209 (371)
T PRK14292        157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII------------TDPCTVCRGRGRT  209 (371)
T ss_pred             CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec------------CCCCCCCCCceEE
Confidence            6789999999953               599999999852            2469999999976

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.67  E-value=0.0074  Score=49.86  Aligned_cols=28  Identities=39%  Similarity=0.865  Sum_probs=23.2

Q ss_pred             CCccCCCCCCCCcc-----cCCCCCcccEEeec
Q 031467           87 RPVSCSSCNSNGHI-----DCKWCAGTGFFILG  114 (159)
Q Consensus        87 r~~~C~~C~GsG~~-----~C~~C~GtG~i~~~  114 (159)
                      +...|+.|+|+|.+     .|+.|+|+|++...
T Consensus        98 ~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~  130 (186)
T TIGR02642        98 NSCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT  130 (186)
T ss_pred             cCCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence            47889999999963     49999999998643

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.0055  Score=53.06  Aligned_cols=60  Identities=30%  Similarity=0.624  Sum_probs=45.8

Q ss_pred             CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---eCCCCCceeEEe
Q 031467           86 PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---CCSDCKGTGFRA  149 (159)
Q Consensus        86 ~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~C~~C~GtG~v~  149 (159)
                      .....|..|.|.|.      ..|..|.|+|.+..-.....   .. .+|..|.|.|.+   .|..|.|.|.|.
T Consensus       162 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f---~~-~~~~~c~~~~~~~~~~c~~~~g~~~v~  230 (288)
T KOG0715|consen  162 NVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPF---IL-YTCSYCLGRGLVLRDNCQACSGAGQVR  230 (288)
T ss_pred             EeecccccccCcCcccccccccchhhhCcccccccccCCc---ce-eecccccccceeccchHHHhhcchhhh
Confidence            45679999999997      46999999997643222111   11 289999999998   699999999765

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=91.40  E-value=0.077  Score=45.60  Aligned_cols=29  Identities=31%  Similarity=0.514  Sum_probs=20.7

Q ss_pred             ceEcCCCCccceeeCCCCCceeEEeeccC
Q 031467          125 NTTCVICAGKGSVCCSDCKGTGFRAKWLG  153 (159)
Q Consensus       125 ~~tCp~C~G~G~i~C~~C~GtG~v~kwl~  153 (159)
                      ..++..-.|++.++||+|+|+|+|.+=++
T Consensus        27 ~~py~e~~g~~~vtCPTCqGtGrIP~eqe   55 (238)
T PF07092_consen   27 SFPYVEFTGRDSVTCPTCQGTGRIPREQE   55 (238)
T ss_pred             cCccccccCCCCCcCCCCcCCccCCccch
Confidence            34566777778888888888888776443

The function of this family is unknown.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=89.65  E-value=0.27  Score=44.11  Aligned_cols=41  Identities=32%  Similarity=0.755  Sum_probs=25.9

Q ss_pred             CCccCCCCCCCCc----------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           87 RPVSCSSCNSNGH----------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        87 r~~~C~~C~GsG~----------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      ...+|..|.|+|.                .+|..|+|+|...          .....|+.|.|++.+
T Consensus       142 ~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~----------~~kd~C~~C~G~~~v  198 (337)
T KOG0712|consen  142 SAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETI----------SLKDRCKTCSGAKVV  198 (337)
T ss_pred             CCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccc----------cccccCcccccchhh
Confidence            3446778887773                3577777777641          122357777777765

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=87.71  E-value=0.4  Score=47.86  Aligned_cols=33  Identities=27%  Similarity=0.640  Sum_probs=19.5

Q ss_pred             cCCCCCcccEEeecccccccCCCCceEcCCCCccce
Q 031467          101 DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGS  136 (159)
Q Consensus       101 ~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~  136 (159)
                      .|+.|.|.|++...-+++..   ...+|+.|+|+..
T Consensus       738 ~C~~C~G~G~~~~~~~f~~~---~~~~C~~C~G~R~  770 (924)
T TIGR00630       738 RCEACQGDGVIKIEMHFLPD---VYVPCEVCKGKRY  770 (924)
T ss_pred             CCCCCccceEEEEEccCCCC---cccCCCCcCCcee
Confidence            48888888888765444322   2345555555543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=84.93  E-value=0.46  Score=40.91  Aligned_cols=26  Identities=19%  Similarity=0.391  Sum_probs=22.1

Q ss_pred             CccCCCCCCCCcccCCCCCcccEEee
Q 031467           88 PVSCSSCNSNGHIDCKWCAGTGFFIL  113 (159)
Q Consensus        88 ~~~C~~C~GsG~~~C~~C~GtG~i~~  113 (159)
                      ..++.+-.|.+.++||.|+|+|+|--
T Consensus        27 ~~py~e~~g~~~vtCPTCqGtGrIP~   52 (238)
T PF07092_consen   27 SFPYVEFTGRDSVTCPTCQGTGRIPR   52 (238)
T ss_pred             cCccccccCCCCCcCCCCcCCccCCc
Confidence            35777888999999999999999943

The function of this family is unknown.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=84.14  E-value=0.79  Score=45.93  Aligned_cols=32  Identities=31%  Similarity=0.731  Sum_probs=21.8

Q ss_pred             cCCCCCcccEEeecccccccCCCCceEcCCCCccc
Q 031467          101 DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKG  135 (159)
Q Consensus       101 ~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G  135 (159)
                      +|..|.|.|.+.+.-+++.++   ..+|+.|+|+-
T Consensus       732 RCe~C~GdG~ikIeM~FLpdV---yv~CevC~GkR  763 (935)
T COG0178         732 RCEACQGDGVIKIEMHFLPDV---YVPCEVCHGKR  763 (935)
T ss_pred             CCccccCCceEEEEeccCCCc---eeeCCCcCCcc
Confidence            688888888887776665443   46677777653

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=82.37  E-value=0.93  Score=45.41  Aligned_cols=32  Identities=28%  Similarity=0.669  Sum_probs=17.6

Q ss_pred             cCCCCCcccEEeecccccccCCCCceEcCCCCccc
Q 031467          101 DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKG  135 (159)
Q Consensus       101 ~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G  135 (159)
                      .|+.|.|.|++...-+++..   ...+|+.|+|+.
T Consensus       740 ~C~~C~G~G~~~~~~~f~~~---~~~~C~~C~G~R  771 (943)
T PRK00349        740 RCEACQGDGVIKIEMHFLPD---VYVPCDVCKGKR  771 (943)
T ss_pred             CCCcccccceEEEEeccCCC---ccccCccccCcc
Confidence            48888888877655443222   224455555544

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=81.95  E-value=0.95  Score=48.33  Aligned_cols=33  Identities=21%  Similarity=0.545  Sum_probs=21.8

Q ss_pred             cCCCCCcccEEeecccccccCCCCceEcCCCCccce
Q 031467          101 DCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGS  136 (159)
Q Consensus       101 ~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~  136 (159)
                      .|+.|.|.|++.+.-+++..   -.++|+.|+|+..
T Consensus      1609 rC~~C~G~G~i~i~m~fl~d---v~~~C~~C~G~R~ 1641 (1809)
T PRK00635       1609 QCSDCWGLGYQWIDRAFYAL---EKRPCPTCSGFRI 1641 (1809)
T ss_pred             CCCCCccCceEEEecccCCC---cccCCCCCCCcCC
Confidence            58888888888766554332   3466777777654

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=81.81  E-value=0.93  Score=45.30  Aligned_cols=26  Identities=31%  Similarity=0.860  Sum_probs=22.3

Q ss_pred             ceEcCCCCcccee------------eCCCCCceeEEee
Q 031467          125 NTTCVICAGKGSV------------CCSDCKGTGFRAK  150 (159)
Q Consensus       125 ~~tCp~C~G~G~i------------~C~~C~GtG~v~k  150 (159)
                      ...|+.|.|.|.+            +|+.|+|+.|-..
T Consensus       736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e  773 (924)
T TIGR00630       736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE  773 (924)
T ss_pred             CCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChH
Confidence            4669999999987            8999999998654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.24
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.24
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.04
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.12
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.83
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.61
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.35
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	97.3
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.07
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.79
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	87.29

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=6.9e-12  Score=90.91  Aligned_cols=60  Identities=30%  Similarity=0.784  Sum_probs=50.4

Q ss_pred             CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---eCCCCCceeEEe
Q 031467           86 PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---CCSDCKGTGFRA  149 (159)
Q Consensus        86 ~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~C~~C~GtG~v~  149 (159)
                      ++.+.|+.|+|+|+      .+|+.|+|+|++.....++    +.+++|+.|+|+|++   +|+.|+|.|++.
T Consensus        26 ~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~----~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           26 NIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPF----VMRSTCRRCGGRGSIIISPCVVCRGAGQAK   94 (104)
T ss_dssp             SCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTE----EEEEECSSSSSSSEECSSCCSSSSSCSEEC
T ss_pred             eeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCE----EEEEECCcCCCcceECCCcCCCCCCeeEEE
Confidence            56789999999995      6899999999986543221    356899999999998   899999999986

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.24  E-value=3.6e-12  Score=87.51  Aligned_cols=60  Identities=28%  Similarity=0.752  Sum_probs=50.0

Q ss_pred             CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---eCCCCCceeEEe
Q 031467           86 PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---CCSDCKGTGFRA  149 (159)
Q Consensus        86 ~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~C~~C~GtG~v~  149 (159)
                      ++.+.|+.|+|+|.      .+|+.|+|+|++...+.+   + +...+|+.|+|+|.+   +|+.|+|.|++.
T Consensus         9 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~---~-~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~   77 (79)
T 1exk_A            9 PTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGF---F-AVQQTCPHCQGRGTLIKDPCNKCHGHGRVE   77 (79)
T ss_dssp             CCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETT---E-EEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred             ccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCC---C-EEeeECcCCCCccEECCCcCCCCCCeEEEe
Confidence            56789999999996      589999999997653322   1 346799999999999   999999999986

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.04  E-value=3.2e-11  Score=99.52  Aligned_cols=79  Identities=22%  Similarity=0.564  Sum_probs=58.5

Q ss_pred             hHHHHHHHHhhhcCC----CCCccCCCCCCCCc-----ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee----
Q 031467           71 NFVKRMEQAWLISQQ----PRPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV----  137 (159)
Q Consensus        71 ~~~~~~e~aw~i~~~----~r~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i----  137 (159)
                      ++..-||++..-..+    .+.+.|+.|+|+|+     .+|+.|+|+|++....++...+.+.+++|+.|+|+|++    
T Consensus        17 ~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~   96 (248)
T 1nlt_A           17 EISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPK   96 (248)
T ss_dssp             EEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTT
T ss_pred             EEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccC
Confidence            444445666655444    46789999999996     68999999999865444321222456789999999964    


Q ss_pred             -eCCCCCceeEEe
Q 031467          138 -CCSDCKGTGFRA  149 (159)
Q Consensus       138 -~C~~C~GtG~v~  149 (159)
                       +|++|+|.|++.
T Consensus        97 ~~C~~C~G~g~~~  109 (248)
T 1nlt_A           97 DRCKSCNGKKVEN  109 (248)
T ss_dssp             SBCSSSTTSCEEE
T ss_pred             CCCcccCCCceEe
Confidence             799999999875

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.12  E-value=1.1e-06  Score=59.86  Aligned_cols=41  Identities=34%  Similarity=0.781  Sum_probs=29.1

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~  149 (159)
                      ++|+.|+|+|....         ....+|+.|+|+|.+           +|+.|+|+|++.
T Consensus        12 ~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~   63 (79)
T 1exk_A           12 EECDVCHGSGAKPG---------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             EECGGGTTTSBCSS---------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred             eECCCCcccccCCC---------ccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence            56888888886310         234678888888864           688888888774

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.83  E-value=1.4e-05  Score=57.51  Aligned_cols=42  Identities=31%  Similarity=0.698  Sum_probs=28.8

Q ss_pred             cccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467           99 HIDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA  149 (159)
Q Consensus        99 ~~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~  149 (159)
                      .+.|+.|+|+|... +        ....+|+.|+|+|.+           +|+.|+|+|++.
T Consensus        28 ~~~C~~C~G~G~~~-g--------~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i   80 (104)
T 2ctt_A           28 MDTCERCNGKGNEP-G--------TKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII   80 (104)
T ss_dssp             CEECSSSSSSSSCT-T--------CCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC
T ss_pred             eeECCCCcCCccCC-C--------CCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC
Confidence            36788888887520 0        234678888888854           688888888764

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.61  E-value=3.7e-05  Score=50.68  Aligned_cols=25  Identities=40%  Similarity=0.849  Sum_probs=20.8

Q ss_pred             ceEcCCCCcccee---eCCCCCceeEEe
Q 031467          125 NTTCVICAGKGSV---CCSDCKGTGFRA  149 (159)
Q Consensus       125 ~~tCp~C~G~G~i---~C~~C~GtG~v~  149 (159)
                      ..+|+.|+|+|++   +|+.|+|.|.+.
T Consensus         9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~   36 (53)
T 3lcz_A            9 ETTCPNCNGSGREEPEPCPKCLGKGVIL   36 (53)
T ss_dssp             EEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred             eccCcCCcccccCCCCcCCCCCCcEEEE
Confidence            5688888888886   888888888875

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.35  E-value=0.00013  Score=48.11  Aligned_cols=24  Identities=29%  Similarity=0.807  Sum_probs=15.4

Q ss_pred             eEcCCCCcccee---eCCCCCceeEEe
Q 031467          126 TTCVICAGKGSV---CCSDCKGTGFRA  149 (159)
Q Consensus       126 ~tCp~C~G~G~i---~C~~C~GtG~v~  149 (159)
                      .+|+.|+|.|.+   +|++|+|.|++.
T Consensus        10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~   36 (53)
T 2bx9_A           10 VACPKCERAGEIEGTPCPACSGKGVIL   36 (53)
T ss_dssp             EECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred             ccCCCCcceeccCCCCCccCCCCccEE
Confidence            456666666655   677777777664

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=97.30  E-value=0.00015  Score=59.52  Aligned_cols=40  Identities=38%  Similarity=0.764  Sum_probs=32.1

Q ss_pred             CccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           88 PVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        88 ~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      ...|+.|+|+|.               .+|+.|+|+|.+..          ...+|+.|+|.|.+
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~----------~~~~C~~C~G~g~~  108 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID----------PKDRCKSCNGKKVE  108 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC----------TTSBCSSSTTSCEE
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec----------cCCCCcccCCCceE
Confidence            578999999995               36999999998531          23579999999976

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.07  E-value=7.8e-05  Score=49.10  Aligned_cols=32  Identities=25%  Similarity=0.702  Sum_probs=24.4

Q ss_pred             cCCCCCccCCCCCCCCc---ccCCCCCcccEEeec
Q 031467           83 SQQPRPVSCSSCNSNGH---IDCKWCAGTGFFILG  114 (159)
Q Consensus        83 ~~~~r~~~C~~C~GsG~---~~C~~C~GtG~i~~~  114 (159)
                      +.+....+|+.|+|+|.   ..|+.|+|+|++...
T Consensus         4 ~~qq~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            4 ATDDLETTCPNCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             CHHHHEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred             ecCceeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence            33445678999999997   579999999987543

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.79  E-value=0.00056  Score=44.96  Aligned_cols=27  Identities=30%  Similarity=0.863  Sum_probs=20.2

Q ss_pred             CccCCCCCCCCc---ccCCCCCcccEEeec
Q 031467           88 PVSCSSCNSNGH---IDCKWCAGTGFFILG  114 (159)
Q Consensus        88 ~~~C~~C~GsG~---~~C~~C~GtG~i~~~  114 (159)
                      ...|+.|+|+|.   .+|+.|+|+|++...
T Consensus         9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~~   38 (53)
T 2bx9_A            9 EVACPKCERAGEIEGTPCPACSGKGVILTA   38 (53)
T ss_dssp             EEECTTTTTSSEETTEECTTTTTSSEEECH
T ss_pred             cccCCCCcceeccCCCCCccCCCCccEEEE
Confidence            457888888886   468888888887643

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=87.29  E-value=0.033  Score=52.32  Aligned_cols=51  Identities=22%  Similarity=0.371  Sum_probs=32.5

Q ss_pred             CCCccCCCCCCCCc---------ccCCCCCcccEEeecc-c--------ccccCCCCceEcCCCCccce
Q 031467           86 PRPVSCSSCNSNGH---------IDCKWCAGTGFFILGD-N--------MLCQVPSRNTTCVICAGKGS  136 (159)
Q Consensus        86 ~r~~~C~~C~GsG~---------~~C~~C~GtG~i~~~~-~--------~~~~~~~~~~tCp~C~G~G~  136 (159)
                      .+.+.|..|||+|+         ++|+.|||+....... .        .....++....|..|+..+.
T Consensus       189 ~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~  257 (669)
T 3pmq_A          189 VSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP  257 (669)
T ss_dssp             CCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCT
T ss_pred             ccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcc
Confidence            56789999999984         5799999994221111 0        01122244567888888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.35
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.35
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.92
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.79
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	97.62
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	90.93

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=1.7e-13  Score=94.26  Aligned_cols=61  Identities=28%  Similarity=0.765  Sum_probs=50.9

Q ss_pred             CCCccCCCCCCCCc------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---eCCCCCceeEEee
Q 031467           86 PRPVSCSSCNSNGH------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---CCSDCKGTGFRAK  150 (159)
Q Consensus        86 ~r~~~C~~C~GsG~------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~C~~C~GtG~v~k  150 (159)
                      ++.+.|+.|+|+|+      .+|+.|+|+|++.....++    +..++|+.|+|+|++   +|+.|+|+|+|.+
T Consensus         9 ~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~----~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~k   78 (79)
T d1exka_           9 PTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFF----AVQQTCPHCQGRGTLIKDPCNKCHGHGRVER   78 (79)
T ss_dssp             CCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTE----EEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred             eeeccCCCCcCcccCCCccceeCCCccceeEEEEecccc----eeeEECcccCcceeECCCCCCCCCCceEeec
Confidence            46789999999995      5699999999986543322    456799999999998   9999999999975

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=1.1e-13  Score=94.49  Aligned_cols=63  Identities=25%  Similarity=0.689  Sum_probs=51.0

Q ss_pred             CCccCCCCCCCCc-----ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----eCCCCCceeEEe
Q 031467           87 RPVSCSSCNSNGH-----IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----CCSDCKGTGFRA  149 (159)
Q Consensus        87 r~~~C~~C~GsG~-----~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----~C~~C~GtG~v~  149 (159)
                      |.+.|+.|+|+|+     .+|+.|+|+|++....++.....+..++|+.|.|+|++     +|+.|+|+|.+.
T Consensus         1 r~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~   73 (74)
T d1nlta3           1 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVEN   73 (74)
T ss_dssp             EEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred             CccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeC
Confidence            4578999999996     57999999999876555332232456789999999986     799999999885

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=3.1e-06  Score=57.18  Aligned_cols=41  Identities=34%  Similarity=0.781  Sum_probs=25.9

Q ss_pred             ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee-----------eCCCCCceeEEe
Q 031467          100 IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV-----------CCSDCKGTGFRA  149 (159)
Q Consensus       100 ~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i-----------~C~~C~GtG~v~  149 (159)
                      +.|+.|+|+|....         ....+|+.|+|.|.+           +|+.|+|+|++-
T Consensus        12 ~~C~~C~G~G~~~g---------~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i   63 (79)
T d1exka_          12 EECDVCHGSGAKPG---------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             EECGGGTTTSBCSS---------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred             ccCCCCcCcccCCC---------ccceeCCCccceeEEEEecccceeeEECcccCcceeEC
Confidence            45777777775211         123567777777765           577777777764

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=8.4e-06  Score=54.49  Aligned_cols=41  Identities=37%  Similarity=0.735  Sum_probs=32.5

Q ss_pred             CCccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           87 RPVSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        87 r~~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      .+..|+.|+|+|.               .+|+.|+|+|++...          ..+|+.|+|+|.+
T Consensus        17 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~----------~~~C~~C~G~g~v   72 (74)
T d1nlta3          17 AVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP----------KDRCKSCNGKKVE   72 (74)
T ss_dssp             TCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT----------TSBCSSSTTSCEE
T ss_pred             CCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCC----------CCCCCCCCCeeEe
Confidence            3567999999995               469999999985321          2369999999976

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=97.62  E-value=1.3e-06  Score=59.02  Aligned_cols=60  Identities=18%  Similarity=0.345  Sum_probs=44.8

Q ss_pred             ccCCCCCCCCc---------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee---eCCCCCceeEE
Q 031467           89 VSCSSCNSNGH---------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV---CCSDCKGTGFR  148 (159)
Q Consensus        89 ~~C~~C~GsG~---------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i---~C~~C~GtG~v  148 (159)
                      ..|.+|||.|.         ..|..|+|+|........+-.....-..|..|+|.|..   .|.+|++.|++
T Consensus        12 ~~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          12 GGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT   83 (90)
T ss_dssp             TCGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCC
T ss_pred             CCCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCcc
Confidence            36999999985         35999999997644333222222566789999998865   89999999965

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=90.93  E-value=0.0098  Score=39.17  Aligned_cols=37  Identities=24%  Similarity=0.594  Sum_probs=22.2

Q ss_pred             ccCCCCCCCCc---------------ccCCCCCcccEEeecccccccCCCCceEcCCCCcccee
Q 031467           89 VSCSSCNSNGH---------------IDCKWCAGTGFFILGDNMLCQVPSRNTTCVICAGKGSV  137 (159)
Q Consensus        89 ~~C~~C~GsG~---------------~~C~~C~GtG~i~~~~~~~~~~~~~~~tCp~C~G~G~i  137 (159)
                      ..|..|||+|.               ..|..|+|+|.            .....|..|++.|..
T Consensus        32 ~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~------------~~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          32 AQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNV------------GQKPTCESCHDDGRT   83 (90)
T ss_dssp             HHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBT------------TCCCCSTTTCSSCCC
T ss_pred             CcCcccCCCceeEeeccccccCccccccCccccCCCC------------cCCCccccccCCCcc
Confidence            35777777764               34666666653            122458888877753