Citrus Sinensis ID: 031498

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE
Secondary Structure (PSIPRED)
ccccccEEEEcccccEEEEcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEccccEEEEcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mssekkitlkssdgetfevEETVALESQTIKHMveddcadtviplpnvtSTILSKVIEYCKKHveagsgdkkddksteddlktwdadFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADmikgktpeEIRKTFnikndfspdeeEEVRRENQWAFE
Flexible Loop (DISEMBL)
mssekkitlkssdgetfevEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHveagsgdkkddkstedDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIkgktpeeirktfnikndfspdeeeevrrenqwafe
Low Complexity Region (SEG)
MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE
Disordered region (IsUnstruct)
**********************VALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHV****************LKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGK********************************
Disordered Region (DISOPRED)
***EKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPD****VRRENQWAFE
Disordered Region (DISEMBL)
MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVE**************DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDF*****************
Disordered Region (DISPRO)
****KKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVE************EDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q9FHW7	171	SKP1-like protein 1B OS=A	yes	no	1.0	0.923	0.742	3e-63
Q39255	160	SKP1-like protein 1A OS=A	no	no	0.987	0.975	0.773	2e-62
Q9LNT9	163	SKP1-like protein 4 OS=Ar	no	no	0.987	0.957	0.706	2e-61
Q9SL93	163	SKP1-like protein 3 OS=Ar	no	no	0.987	0.957	0.7	4e-60
O49484	152	SKP1-like protein 11 OS=A	no	no	0.955	0.993	0.685	3e-55
O65674	152	SKP1-like protein 12 OS=A	no	no	0.949	0.986	0.668	2e-54
Q9M1X5	154	SKP1-like protein 13 OS=A	no	no	0.949	0.974	0.621	9e-49
Q9LSX8	152	SKP1-like protein 10 OS=A	no	no	0.949	0.986	0.617	2e-48
O81057	149	SKP1-like protein 14 OS=A	no	no	0.930	0.986	0.624	3e-48
Q9LSX9	153	SKP1-like protein 9 OS=Ar	no	no	0.949	0.980	0.601	1e-47

>sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1

 Score =  240 bits (612), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 127/171 (74%), Positives = 142/171 (83%), Gaps = 13/171 (7%)

Query: 1   MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYC 60
           MS+ +KITLKSSDGE FE++E VALESQTIKHM+EDDC D  IPLPNVTS ILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVEAGSGDKKD-------------DKSTEDDLKTWDADFVKVDQNTLFDLILAANYLN 107
           K+HVEA    +                 S+++DLKTWD++F+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 108 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. SCF(UFO) is required for vegetative and floral organ development as well as for male gametogenesis. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1), SCF(ADO2), SCF(ADO3) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling. Plays a role during embryogenesis and early postembryonic development, especially during cell elongation and division. Contributes to the correct chromosome segregation during tetrad formation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39255|SKP1A_ARATH SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1

 Score =  238 bits (606), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 137/159 (86%), Gaps = 3/159 (1%)

Query: 3   SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
           S KKI LKSSDGE+FEVEE VALESQTI HMVEDDC D  +PLPNVTS IL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVEAGSGDKK---DDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119
           HVEA +   +      +++DDLK WDADF+K+DQ TLF+LILAANYLNIK LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 120 ADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           ADMIKGKTPEEIR TFNIKNDF+P+EEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. SCF(UFO) is required for vegetative and floral organ development as well as for male gametogenesis. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1), SCF(ADO2), SCF(ADO3) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling. Plays a role during embryogenesis and early postembryonic development, especially during cell elongation and division. Contributes to the correct chromosome segregation during tetrad formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/160 (70%), Positives = 134/160 (83%), Gaps = 4/160 (2%)

Query: 3   SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
           ++K I LKSSDGE+FE+EE VA++SQTIKHM+EDDCAD  IPLPNVT  IL+KVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVEAGS---GDKKDDKSTEDD-LKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQT 118
           HVEA +   GDK    S E+D LK WD++FVKVDQ TLFDLILAANYLNI GLLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 119 VADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           VAD ++GKTPE++R  FNIKND++P+EE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SL93|ASK3_ARATH SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1

 Score =  229 bits (585), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/160 (70%), Positives = 132/160 (82%), Gaps = 4/160 (2%)

Query: 3   SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
           ++K I LKSSDGE+FEVEE VA+ESQTIKHM+EDDC D  IPLPNVT  IL+KVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVEAGS---GDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQT 118
           HVEA +   GDK    STE+ +LKTWD DFVKVD  TLFDL+ AANYLNI GLLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKA 123

Query: 119 VADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           VAD ++GKTP ++R+ FNIKND++P+EE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|O49484|ASK11_ARATH SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1

 Score =  213 bits (543), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/156 (68%), Positives = 124/156 (79%), Gaps = 5/156 (3%)

Query: 3   SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
           S K I L SSDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADM 122
           H      D+ +  S E+DL  WD  F+ ++Q+T+F+LILAANYLNIK LLDLTCQTVADM
Sbjct: 62  H----HVDEANPIS-EEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADM 116

Query: 123 IKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           IKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct: 117 IKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.

Arabidopsis thaliana (taxid: 3702)

>sp|O65674|ASK12_ARATH SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1

 Score =  211 bits (536), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/157 (66%), Positives = 123/157 (78%), Gaps = 7/157 (4%)

Query: 3   SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
           S K I L SSDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD 121
            HV+        +  +E+DL  WD  F+ ++Q+T+F+LILAANYLNIK L DLTCQTVAD
Sbjct: 62  YHVDEA------NPISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVAD 115

Query: 122 MIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           MIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct: 116 MIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1X5|ASK13_ARATH SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1

 Score =  192 bits (487), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 97/156 (62%), Positives = 122/156 (78%), Gaps = 6/156 (3%)

Query: 5   KKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHV 64
           K + L SSDGE+F+VEE VA++SQTI HM+EDDC    +P+ NVT  ILSKVIEYCKKHV
Sbjct: 3   KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHV 62

Query: 65  EAGSGDKKDDKSTEDDLKTWDADFVKV--DQNTLFDLILAANYLNIKGLLDLTCQTVADM 122
            + S  ++    ++D+LK WDA+F+K     +TLFD++LAANYLNIK LLDL CQTVADM
Sbjct: 63  VSDSPTEE----SKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADM 118

Query: 123 IKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           I GK P+EIR    I+NDF+P+EEEE+R+ENQWAFE
Sbjct: 119 ITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSX8|ASK10_ARATH SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=1

 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/157 (61%), Positives = 114/157 (72%), Gaps = 7/157 (4%)

Query: 3   SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYC-K 61
           S KKI LKSSDG +FEVEE  A + QTI HM EDDC D  IPLP VT  IL  VIEYC K
Sbjct: 2   STKKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNK 61

Query: 62  KHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD 121
            HV+A       +  +++DLK WD +F++  Q+T+FDLI+AANYLNIK LLDL CQTVAD
Sbjct: 62  HHVDAA------NPCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVAD 115

Query: 122 MIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           MIK  T E  RK FNI+ND++ +EEE VRRENQW FE
Sbjct: 116 MIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|O81057|ASK14_ARATH SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1

 Score =  190 bits (483), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/157 (62%), Positives = 119/157 (75%), Gaps = 10/157 (6%)

Query: 3   SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
           S  KI L SSDGE+FEVEE VA + + ++HM+EDDC  T +PL NVT  ILS V+EYCKK
Sbjct: 2   SSNKIVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKK 61

Query: 63  HVEAGSGDKKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVAD 121
           HV        D++S  D+ KTWD +F+K  DQ T+F L+LAANYLNIKGLLDL+ QTVAD
Sbjct: 62  HV-------VDEES--DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVAD 112

Query: 122 MIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
            IK KTPEEIR+ FNI+NDF+P+EE  VR+EN WAFE
Sbjct: 113 RIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1

 Score =  188 bits (478), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 117/158 (74%), Gaps = 8/158 (5%)

Query: 3   SEKKITLKSSDGETFEVEETVALESQTI-KHMVEDDCADTVIPLPNVTSTILSKVIEYC- 60
           S KKI LKSSDG +FEVEE  A + Q I  HM E+DC D  IPLPNVT  IL+ VIEYC 
Sbjct: 2   STKKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCN 61

Query: 61  KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA 120
           K HV+A       +  ++DDLK WD +F++ D +T+FDLI AANYLNIK L DL CQTVA
Sbjct: 62  KHHVDAA------NPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVA 115

Query: 121 DMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           ++IKG TPE+IR+ FNI+ND +P+EE  +RREN+WAFE
Sbjct: 116 EIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
227184175	158	SKP1-like protein [Citrus maxima]	1.0	1.0	0.987	3e-84
356496612	155	PREDICTED: SKP1-like protein 1A-like [Gl	0.981	1.0	0.854	2e-66
225428047	155	PREDICTED: SKP1-like protein 1A [Vitis v	0.981	1.0	0.778	5e-66
392499473	156	GSK1 [Gossypium hirsutum] gi|399912953|g	0.974	0.987	0.853	5e-66
351721426	155	uncharacterized protein LOC100527683 [Gl	0.981	1.0	0.848	8e-66
449454215	155	PREDICTED: SKP1-like protein 1B-like [Cu	0.981	1.0	0.848	1e-65
388513401	155	unknown [Lotus japonicus]	0.981	1.0	0.848	2e-65
255625783	155	unknown [Glycine max]	0.981	1.0	0.841	2e-65
357483877	155	SKP1-like protein [Medicago truncatula]	0.981	1.0	0.829	2e-65
359806806	155	uncharacterized protein LOC100798104 [Gl	0.981	1.0	0.835	3e-65

>gi|227184175|gb|ACP20181.1| SKP1-like protein [Citrus maxima]

 Score =  315 bits (808), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 156/158 (98%), Positives = 156/158 (98%)

Query: 1   MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYC 60
           MSSEKKITLKSSDGETFEVEETVALESQTIKH VEDDCADTVIPLPNVTSTILSKVIEYC
Sbjct: 1   MSSEKKITLKSSDGETFEVEETVALESQTIKHTVEDDCADTVIPLPNVTSTILSKVIEYC 60

Query: 61  KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA 120
           KKHVEAGSGDKKDDKST DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA
Sbjct: 61  KKHVEAGSGDKKDDKSTVDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA 120

Query: 121 DMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           DMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE
Sbjct: 121 DMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496612|ref|XP_003517160.1| PREDICTED: SKP1-like protein 1A-like [Glycine max]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/158 (85%), Positives = 144/158 (91%), Gaps = 3/158 (1%)

Query: 1   MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYC 60
           MSS KKITLKSSDGE FEV+E VALESQTIKHM+EDDCAD+ IPLPNVTS IL+KVIEYC
Sbjct: 1   MSSAKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA 120
           KKHVEA +    +DK +EDDLK WDADFVKVDQ TLFDLILAANYLNIK LLDLTCQTVA
Sbjct: 61  KKHVEAAN---PEDKPSEDDLKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 117

Query: 121 DMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           DMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct: 118 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428047|ref|XP_002279232.1| PREDICTED: SKP1-like protein 1A [Vitis vinifera] gi|147820987|emb|CAN73136.1| hypothetical protein VITISV_023042 [Vitis vinifera]

 Score =  255 bits (651), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 123/158 (77%), Positives = 138/158 (87%), Gaps = 3/158 (1%)

Query: 1   MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYC 60
           M+S K ITL+SSDGE F++EE VA+ESQTIKHM+ED CAD  IPLPNVTS IL+KVIEYC
Sbjct: 1   MASSKTITLRSSDGEAFDLEEVVAVESQTIKHMIEDGCADNAIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA 120
           KKHVE     K ++ +  D+LK WDADFVKVDQ TLFDLILAANYL+IK LLDLTCQTVA
Sbjct: 61  KKHVETP---KAEEHAVNDELKAWDADFVKVDQATLFDLILAANYLDIKSLLDLTCQTVA 117

Query: 121 DMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           DMIKGKTPEEIRKTFNIKNDF+P+EEE+VRRENQWAFE
Sbjct: 118 DMIKGKTPEEIRKTFNIKNDFTPEEEEDVRRENQWAFE 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|392499473|gb|AFM75900.1| GSK1 [Gossypium hirsutum] gi|399912953|gb|AFP55363.1| SKP1-like protein [Gossypium hirsutum]

 Score =  255 bits (651), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 134/157 (85%), Positives = 145/157 (92%), Gaps = 3/157 (1%)

Query: 2   SSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCK 61
           SS +KITLKSSDGE+FEV+E VALESQTIKHM+EDDCAD  IPLPNVTS IL+KVIEYCK
Sbjct: 3   SSGRKITLKSSDGESFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCK 62

Query: 62  KHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD 121
           KHVEA    K DD+S +D+LK+WDADFVKVDQ TLFDLILAANYLNIKGLLDLTCQTVAD
Sbjct: 63  KHVEAP---KTDDRSADDELKSWDADFVKVDQATLFDLILAANYLNIKGLLDLTCQTVAD 119

Query: 122 MIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           MIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct: 120 MIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721426|ref|NP_001235929.1| uncharacterized protein LOC100527683 [Glycine max] gi|255632942|gb|ACU16825.1| unknown [Glycine max]

 Score =  254 bits (649), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 134/158 (84%), Positives = 143/158 (90%), Gaps = 3/158 (1%)

Query: 1   MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYC 60
           MSS KKITLKSSDGE FEVEE VALESQTIKHM+EDDCAD+ IPLPNVTS IL+KVIEYC
Sbjct: 1   MSSAKKITLKSSDGEAFEVEEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA 120
           KKHVEA +    +DK +EDDLK W A+FVKVDQ TLFDLILAANYLNIK LLDLTCQTVA
Sbjct: 61  KKHVEAAN---PEDKPSEDDLKAWAAEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 117

Query: 121 DMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           DMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct: 118 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454215|ref|XP_004144851.1| PREDICTED: SKP1-like protein 1B-like [Cucumis sativus] gi|449508821|ref|XP_004163420.1| PREDICTED: SKP1-like protein 1B-like [Cucumis sativus]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 134/158 (84%), Positives = 143/158 (90%), Gaps = 3/158 (1%)

Query: 1   MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYC 60
           MSS KKI L+SSDGETF+V+E VA+ESQTIKHM+EDDCADTVIPLPNVTS ILSKVIEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA 120
           K HVE    D KD K  +D LKTWDA+FVKVDQNTLFDLILAANYLNIK LLDLTCQTVA
Sbjct: 61  KMHVET---DDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVA 117

Query: 121 DMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           DMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct: 118 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513401|gb|AFK44762.1| unknown [Lotus japonicus]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/158 (84%), Positives = 143/158 (90%), Gaps = 3/158 (1%)

Query: 1   MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYC 60
           MSS KKITLKSSDGE FEV+E VALES+TIKHMVEDDCAD+ IPLPN TS IL+KVIEYC
Sbjct: 1   MSSAKKITLKSSDGEAFEVDEAVALESRTIKHMVEDDCADSGIPLPNATSKILAKVIEYC 60

Query: 61  KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA 120
           KKHVEA +    D+K TED+LK WDADFVKVDQ TLFDLILAANYLNIK LLDLTCQTVA
Sbjct: 61  KKHVEAAN---PDEKPTEDELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 117

Query: 121 DMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           DMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct: 118 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255625783|gb|ACU13236.1| unknown [Glycine max]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/158 (84%), Positives = 143/158 (90%), Gaps = 3/158 (1%)

Query: 1   MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYC 60
           M+S KKITLKSSDGE FEVEE VA+ESQTIKHMVED+CAD+ IPLPNVTS IL+KVIEYC
Sbjct: 1   MASTKKITLKSSDGEAFEVEEAVAVESQTIKHMVEDNCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA 120
           KKHVEA   D   +K +ED+LK WDADFVKVDQ TLFDLILAANYLNIK LLDLTCQTVA
Sbjct: 61  KKHVEANCAD---EKPSEDELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 117

Query: 121 DMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           DMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct: 118 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483877|ref|XP_003612225.1| SKP1-like protein [Medicago truncatula] gi|109255188|gb|ABG27019.1| SKP1-like a [Medicago truncatula] gi|217071242|gb|ACJ83981.1| unknown [Medicago truncatula] gi|355513560|gb|AES95183.1| SKP1-like protein [Medicago truncatula] gi|388519045|gb|AFK47584.1| unknown [Medicago truncatula]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 131/158 (82%), Positives = 145/158 (91%), Gaps = 3/158 (1%)

Query: 1   MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYC 60
           MSS +KITLKSSDGETFEV+E VALESQTIKHM+EDDCAD+ IPLPNVTS IL+KVIEYC
Sbjct: 1   MSSTRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA 120
           KKHVEA + +   +K +ED++K+WD +FVKVDQ TLFDLILAANYLNIK LLDLTCQTVA
Sbjct: 61  KKHVEAAAAE---EKPSEDEIKSWDGEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 117

Query: 121 DMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           DMIKGKTPEEIRKTFNIKNDFSP+EEEEVRRENQWAFE
Sbjct: 118 DMIKGKTPEEIRKTFNIKNDFSPEEEEEVRRENQWAFE 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806806|ref|NP_001241052.1| uncharacterized protein LOC100798104 [Glycine max] gi|255641709|gb|ACU21125.1| unknown [Glycine max]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 132/158 (83%), Positives = 143/158 (90%), Gaps = 3/158 (1%)

Query: 1   MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYC 60
           M+S KKITLKSSDGE FEVEE VA+ESQTIKHM+ED+CAD+ IPLPNVTS IL+KVIEYC
Sbjct: 1   MASTKKITLKSSDGEAFEVEEAVAVESQTIKHMIEDNCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA 120
           KKHVEA   D   +K +ED+LK WDADFVKVDQ TLFDLILAANYLNIK LLDLTCQTVA
Sbjct: 61  KKHVEANCAD---EKPSEDELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVA 117

Query: 121 DMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           DMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct: 118 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2165825	171	ASK2 "AT5G42190" [Arabidopsis	1.0	0.923	0.748	3.3e-63
TAIR|locus:2204435	160	SKP1 "AT1G75950" [Arabidopsis	0.987	0.975	0.779	2.3e-62
TAIR|locus:2198621	163	SK4 "AT1G20140" [Arabidopsis t	0.987	0.957	0.706	9.6e-57
TAIR|locus:2050281	163	SK3 "AT2G25700" [Arabidopsis t	0.987	0.957	0.7	6.8e-56
TAIR|locus:2124281	152	SK11 "AT4G34210" [Arabidopsis	0.955	0.993	0.685	1.5e-51
TAIR|locus:2139504	152	SK12 "AT4G34470" [Arabidopsis	0.949	0.986	0.668	1.1e-50
TAIR|locus:2080532	154	SK13 "AT3G60010" [Arabidopsis	0.949	0.974	0.634	2.3e-48
TAIR|locus:2056956	149	SK14 "AT2G03170" [Arabidopsis	0.930	0.986	0.624	3e-46
DICTYBASE|DDB_G0269230	162	fpaA "ubiquitin ligase subunit	0.943	0.919	0.611	1e-45
TAIR|locus:2093094	152	SK10 "AT3G21860" [Arabidopsis	0.949	0.986	0.617	1e-45

TAIR|locus:2165825 ASK2 "AT5G42190" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 128/171 (74%), Positives = 143/171 (83%)

Query:     1 MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYC 60
             MS+ +KITLKSSDGE FE++E VALESQTIKHM+EDDC D  IPLPNVTS ILSKVIEYC
Sbjct:     1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query:    61 KKHVEAGS-GDKKDDK------------STEDDLKTWDADFVKVDQNTLFDLILAANYLN 107
             K+HVEA    +   D             S+++DLKTWD++F+KVDQ TLFDLILAANYLN
Sbjct:    61 KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query:   108 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
             IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:   121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;RCA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2204435 SKP1 "AT1G75950" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 124/159 (77%), Positives = 138/159 (86%)

Query:     3 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
             S KKI LKSSDGE+FEVEE VALESQTI HMVEDDC D  +PLPNVTS IL+KVIEYCK+
Sbjct:     2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query:    63 HVEAGSGDKK--DDKST-EDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119
             HVEA +   +  +  +T +DDLK WDADF+K+DQ TLF+LILAANYLNIK LLDLTCQTV
Sbjct:    62 HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query:   120 ADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
             ADMIKGKTPEEIR TFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:   122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA;NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007140 "male meiosis" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0045910 "negative regulation of DNA recombination" evidence=IMP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0007067 "mitosis" evidence=RCA;TAS

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2198621 SK4 "AT1G20140" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 113/160 (70%), Positives = 134/160 (83%)

Query:     3 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
             ++K I LKSSDGE+FE+EE VA++SQTIKHM+EDDCAD  IPLPNVT  IL+KVIEYCKK
Sbjct:     4 TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query:    63 HVEAGS---GDKKDDKSTE-DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQT 118
             HVEA +   GDK    S E D+LK WD++FVKVDQ TLFDLILAANYLNI GLLDLTC+ 
Sbjct:    64 HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query:   119 VADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
             VAD ++GKTPE++R  FNIKND++P+EE EVR EN+WAFE
Sbjct:   124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2050281 SK3 "AT2G25700" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 112/160 (70%), Positives = 132/160 (82%)

Query:     3 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
             ++K I LKSSDGE+FEVEE VA+ESQTIKHM+EDDC D  IPLPNVT  IL+KVIEYCKK
Sbjct:     4 TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63

Query:    63 HVEAGS---GDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQT 118
             HVEA +   GDK    STE+ +LKTWD DFVKVD  TLFDL+ AANYLNI GLLDLTC+ 
Sbjct:    64 HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKA 123

Query:   119 VADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
             VAD ++GKTP ++R+ FNIKND++P+EE EVR EN+WAFE
Sbjct:   124 VADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2124281 SK11 "AT4G34210" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 107/156 (68%), Positives = 124/156 (79%)

Query:     3 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
             S K I L SSDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKK
Sbjct:     2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query:    63 HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADM 122
             H      D+ +  S E+DL  WD  F+ ++Q+T+F+LILAANYLNIK LLDLTCQTVADM
Sbjct:    62 H----HVDEANPIS-EEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADM 116

Query:   123 IKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
             IKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:   117 IKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2139504 SK12 "AT4G34470" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 105/157 (66%), Positives = 123/157 (78%)

Query:     3 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
             S K I L SSDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKK
Sbjct:     2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query:    63 -HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD 121
              HV+  +        +E+DL  WD  F+ ++Q+T+F+LILAANYLNIK L DLTCQTVAD
Sbjct:    62 YHVDEAN------PISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVAD 115

Query:   122 MIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
             MIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:   116 MIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2080532 SK13 "AT3G60010" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 99/156 (63%), Positives = 125/156 (80%)

Query:     5 KKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHV 64
             K + L SSDGE+F+VEE VA++SQTI HM+EDDC    +P+ NVT  ILSKVIEYCKKHV
Sbjct:     3 KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHV 62

Query:    65 EAGSGDKKDDKSTEDDLKTWDADFVK-VDQN-TLFDLILAANYLNIKGLLDLTCQTVADM 122
              +   D   ++S +D+LK WDA+F+K ++Q+ TLFD++LAANYLNIK LLDL CQTVADM
Sbjct:    63 VS---DSPTEES-KDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADM 118

Query:   123 IKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
             I GK P+EIR    I+NDF+P+EEEE+R+ENQWAFE
Sbjct:   119 ITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2056956 SK14 "AT2G03170" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 98/157 (62%), Positives = 119/157 (75%)

Query:     3 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
             S  KI L SSDGE+FEVEE VA + + ++HM+EDDC  T +PL NVT  ILS V+EYCKK
Sbjct:     2 SSNKIVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKK 61

Query:    63 HVEAGSGDKKDDKSTEDDLKTWDADFVK-VDQNTLFDLILAANYLNIKGLLDLTCQTVAD 121
             HV        D++S  D+ KTWD +F+K  DQ T+F L+LAANYLNIKGLLDL+ QTVAD
Sbjct:    62 HVV-------DEES--DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVAD 112

Query:   122 MIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
              IK KTPEEIR+ FNI+NDF+P+EE  VR+EN WAFE
Sbjct:   113 RIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0269230 fpaA "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 93/152 (61%), Positives = 122/152 (80%)

Query:     7 ITLKSSDGETFEVEETVALESQTIKHMVED-DCADTVIPLPNVTSTILSKVIEYCKKHVE 65
             + L+SSD + FE+E+ +A  S TIK+M+ED   +D+ IPLPNVTSTIL KV++YC+ H +
Sbjct:     4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQ 63

Query:    66 AGS--GDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 123
               S  GD K D+   DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI
Sbjct:    64 HPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMI 123

Query:   124 KGKTPEEIRKTFNIKNDFSPDEEEEVRRENQW 155
             +GKTPEEIRK FNIKNDF+P+EEE++R+EN+W
Sbjct:   124 RGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155

GO:0005515 "protein binding" evidence=IPI

GO:0030587 "sorocarp development" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

TAIR|locus:2093094 SK10 "AT3G21860" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 97/157 (61%), Positives = 114/157 (72%)

Query:     3 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
             S KKI LKSSDG +FEVEE  A + QTI HM EDDC D  IPLP VT  IL  VIEYC K
Sbjct:     2 STKKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNK 61

Query:    63 H-VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD 121
             H V+A +        +++DLK WD +F++  Q+T+FDLI+AANYLNIK LLDL CQTVAD
Sbjct:    62 HHVDAAN------PCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVAD 115

Query:   122 MIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
             MIK  T E  RK FNI+ND++ +EEE VRRENQW FE
Sbjct:   116 MIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3ZCF3	SKP1_BOVIN	No assigned EC number	0.5786	0.9620	0.9325	yes	no
Q0CA59	SKP1_ASPTN	No assigned EC number	0.5246	0.9936	0.9751	N/A	no
Q5KU00	SKP1_ASPOR	No assigned EC number	0.5519	0.9430	0.9254	yes	no
Q8TGW7	SKP1_ARTOT	No assigned EC number	0.5187	0.9746	0.9333	N/A	no
Q6PEC4	SKP1_RAT	No assigned EC number	0.5786	0.9620	0.9325	yes	no
Q4R5B9	SKP1_MACFA	No assigned EC number	0.5786	0.9620	0.9325	N/A	no
A1C9U5	SKP1_ASPCL	No assigned EC number	0.5354	0.9620	0.9559	N/A	no
B8MDP8	SKP1_TALSN	No assigned EC number	0.5064	0.9556	0.9437	N/A	no
Q9WTX5	SKP1_MOUSE	No assigned EC number	0.5786	0.9620	0.9325	yes	no
Q9FHW7	SKP1B_ARATH	No assigned EC number	0.7426	1.0	0.9239	yes	no
Q71U00	SKP1_XENLA	No assigned EC number	0.5786	0.9620	0.9325	N/A	no
Q557E4	SKP1B_DICDI	No assigned EC number	0.6078	0.9493	0.9259	yes	no
Q9Y709	SKP1_SCHPO	No assigned EC number	0.5253	0.9430	0.9254	yes	no
Q5R512	SKP1_PONAB	No assigned EC number	0.5786	0.9620	0.9325	yes	no
B0Y3B5	SKP1_ASPFC	No assigned EC number	0.5419	0.9620	0.9620	N/A	no
B8NSJ0	SKP1_ASPFN	No assigned EC number	0.5519	0.9430	0.9254	N/A	no
Q39255	SKP1A_ARATH	No assigned EC number	0.7735	0.9873	0.975	no	no
Q9LNT9	ASK4_ARATH	No assigned EC number	0.7062	0.9873	0.9570	no	no
A1CZG3	SKP1_NEOFI	No assigned EC number	0.5419	0.9620	0.9620	N/A	no
Q5ZKF5	SKP1_CHICK	No assigned EC number	0.5786	0.9620	0.9325	yes	no
C5FHU9	SKP1_ARTOC	No assigned EC number	0.5312	0.9746	0.9333	N/A	no
P52285	SKP1A_DICDI	No assigned EC number	0.6078	0.9493	0.9259	yes	no
Q4WTT8	SKP1_ASPFU	No assigned EC number	0.5419	0.9620	0.9620	yes	no
D4ARL8	SKP1_ARTBC	No assigned EC number	0.5246	0.9873	0.9512	N/A	no
Q5BAX8	SKP1_EMENI	No assigned EC number	0.5286	0.9746	0.9565	yes	no
P63209	SKP1_CAVPO	No assigned EC number	0.5786	0.9620	0.9325	yes	no
P63208	SKP1_HUMAN	No assigned EC number	0.5786	0.9620	0.9325	yes	no
B6QGB9	SKP1_PENMQ	No assigned EC number	0.5064	0.9556	0.9437	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
pfam01466	78	pfam01466, Skp1, Skp1 family, dimerisation domain	4e-48
COG5201	158	COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen	1e-47
smart00512	104	smart00512, Skp1, Found in Skp1 protein family	3e-41
pfam03931	61	pfam03931, Skp1_POZ, Skp1 family, tetramerisation	8e-27

>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain

 Score =  149 bits (379), Expect = 4e-48
 Identities = 63/78 (80%), Positives = 72/78 (92%)

Query: 81  LKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKND 140
           LK WDA+FV VDQ+TLFDLILAANYLNIKGLLDL CQ VADMIKGKTPEEIR+ F I+ND
Sbjct: 1   LKEWDAEFVDVDQDTLFDLILAANYLNIKGLLDLACQKVADMIKGKTPEEIREIFGIEND 60

Query: 141 FSPDEEEEVRRENQWAFE 158
           F+P+EEEE+R+EN+WAFE
Sbjct: 61  FTPEEEEEIRKENEWAFE 78

Length = 78

>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

 Score =  151 bits (383), Expect = 1e-47
 Identities = 76/153 (49%), Positives = 104/153 (67%), Gaps = 2/153 (1%)

Query: 6   KITLKSSDGETFEVEETVALESQTIKHMVEDDCADTV-IPLPNVTSTILSKVIEYCKKHV 64
            I L+S DGE F V+E +A  S  IK+M+ D  A    IP PNV S++L KV E+ + H 
Sbjct: 3   MIELESIDGEIFRVDENIAERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHT 62

Query: 65  EAGSGDKKDDKSTE-DDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 123
            + S D+ D +  +      WD  F++VDQ  L ++ LAANYL IK LLDL C+ VA+MI
Sbjct: 63  SSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMI 122

Query: 124 KGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 156
           +GK+PEEIR+TFNI+NDF+P+EE  +R+EN+WA
Sbjct: 123 RGKSPEEIRETFNIENDFTPEEERRIRKENEWA 155

Length = 158

>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family

 Score =  133 bits (336), Expect = 3e-41
 Identities = 64/111 (57%), Positives = 74/111 (66%), Gaps = 13/111 (11%)

Query: 4   EKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTV----IPLPNVTSTILSKVIEY 59
            K I L SSDGE FEVE  VA +S+TIK M+ED   D      IPLPNVTS ILSKVIEY
Sbjct: 1   SKYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEY 60

Query: 60  CKKHVEAGSGDKKDDKSTED--DLKTWDADFVKVDQNTLFDLILAANYLNI 108
           C+ H         D  S  D  D+ TWDA+F+K+DQ TLF+LILAANYL+I
Sbjct: 61  CEHH-------VDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. Length = 104

>gnl|CDD|217800 pfam03931, Skp1_POZ, Skp1 family, tetramerisation domain

 Score = 95.0 bits (237), Expect = 8e-27
 Identities = 39/61 (63%), Positives = 44/61 (72%)

Query: 5  KKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHV 64
          K I L SSDGE FEVE  VA +S+TIK M+ED   D  IPLPNVTS IL+KVIE+CK H 
Sbjct: 1  KLIKLTSSDGEIFEVEREVARQSKTIKAMIEDLGVDDPIPLPNVTSKILAKVIEWCKHHK 60

Query: 65 E 65
           
Sbjct: 61 V 61

Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	100.0
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	100.0
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	99.97
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	99.96
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	99.84
KOG3473	112	consensus RNA polymerase II transcription elongati	99.8
PHA02713	557	hypothetical protein; Provisional	99.04
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	98.98
PHA03098	534	kelch-like protein; Provisional	98.87
PHA02790	480	Kelch-like protein; Provisional	98.86
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	98.73
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.61
KOG4682	488	consensus Uncharacterized conserved protein, conta	97.24
KOG2716	230	consensus Polymerase delta-interacting protein PDI	97.02
KOG4350	620	consensus Uncharacterized conserved protein, conta	96.58
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	96.34
KOG0783	1267	consensus Uncharacterized conserved protein, conta	94.68
KOG3433	203	consensus Protein involved in meiotic recombinatio	93.85
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	93.33
COG5124	209	Protein predicted to be involved in meiotic recomb	91.27
KOG2075	521	consensus Topoisomerase TOP1-interacting protein B	87.75
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	86.51
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	83.25
PF05409	293	Peptidase_C30: Coronavirus endopeptidase C30; Inte	83.14
PF07928	135	Vps54: Vps54-like protein; InterPro: IPR012501 Thi	80.37

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-50  Score=291.50  Aligned_cols=155  Identities=66%  Similarity=1.034  Sum_probs=140.4

Q ss_pred             CCcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-CCC--ceecCCCCHHHHHHHHHHHHHhcccCCCCCCC-CCCCcc
Q 031498            4 EKKITLKSSDGETFEVEETVALESQTIKHMVEDDC-ADT--VIPLPNVTSTILSKVIEYCKKHVEAGSGDKKD-DKSTED   79 (158)
Q Consensus         4 ~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~-~~~--~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~-~~~~~~   79 (158)
                      .++|+|+|+||++|.|+.++|++|.+|++++.+.| ...  +||||+|+|.+|++||+||+||+.+++...+. ..+...
T Consensus         4 ~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~   83 (162)
T KOG1724|consen    4 KKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEET   83 (162)
T ss_pred             CCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccC
Confidence            67999999999999999999999999999998776 344  89999999999999999999999876532211 123444


Q ss_pred             hhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHHhcccccC
Q 031498           80 DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE  158 (158)
Q Consensus        80 ~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~eee~~i~~e~~w~~~  158 (158)
                      .++.||++|++++..+||+|+.|||||+|++|+++||+.+|++++||||+|||..|||++|+||||+++++++|.|+|+
T Consensus        84 ~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e~~~~~~  162 (162)
T KOG1724|consen   84 DIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKENEWAFE  162 (162)
T ss_pred             CccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhccccccC
Confidence            5999999999999999999999999999999999999999999999999999999999999999999999999999986

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.7e-49  Score=268.13  Aligned_cols=153  Identities=49%  Similarity=0.797  Sum_probs=138.4

Q ss_pred             cEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCC-CCCCcchhch
Q 031498            6 KITLKSSDGETFEVEETVALESQTIKHMVEDDC-ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKD-DKSTEDDLKT   83 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~-~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~-~~~~~~~~~~   83 (158)
                      .|.|.|.||++|+|+..+|..|-+|++|+.+.+ ...|||+|+|+|.+|.+|++||+||.....++..+ .-....+...
T Consensus         3 ~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~   82 (158)
T COG5201           3 MIELESIDGEIFRVDENIAERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDF   82 (158)
T ss_pred             ceEEEecCCcEEEehHHHHHHHHHHHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccH
Confidence            799999999999999999999999999998765 47789999999999999999999998754433221 1223455678


Q ss_pred             HHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHHhcccccC
Q 031498           84 WDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE  158 (158)
Q Consensus        84 wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~eee~~i~~e~~w~~~  158 (158)
                      ||..|+.+|+++|+++++|||||+|++|+++||+.||.+|+|||++|||++|||++||||||+++++|||.|++|
T Consensus        83 wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkEnEWaed  157 (158)
T COG5201          83 WDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKENEWAED  157 (158)
T ss_pred             HHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHhcccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999986

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.97  E-value=9.8e-32  Score=173.93  Aligned_cols=78  Identities=65%  Similarity=1.193  Sum_probs=68.7

Q ss_pred             hchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHHhcccccC
Q 031498           81 LKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE  158 (158)
Q Consensus        81 ~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~eee~~i~~e~~w~~~  158 (158)
                      +++||++|++++.+.|++|+.||+||+|++|+++||++||.+++|||++|||++|||++|+|+||+++++++|+|+||
T Consensus         1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e~~w~~~   78 (78)
T PF01466_consen    1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKENEWAFE   78 (78)
T ss_dssp             HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHHCCCTB-
T ss_pred             CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHHcchhcC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999999996

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>smart00512 Skp1 Found in Skp1 protein family

Probab=99.96  E-value=1.3e-29  Score=172.57  Aligned_cols=99  Identities=63%  Similarity=0.940  Sum_probs=88.1

Q ss_pred             CcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC----CCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcch
Q 031498            5 KKITLKSSDGETFEVEETVALESQTIKHMVEDDCA----DTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDD   80 (158)
Q Consensus         5 ~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~~----~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~   80 (158)
                      ++|+|+|+||++|.|++++|++|++|++|+++.+.    ..+||+|+|++.+|++|++||+||+.++.+...     ...
T Consensus         2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~-----~~~   76 (104)
T smart00512        2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVAD-----KDD   76 (104)
T ss_pred             CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccc-----ccc
Confidence            57999999999999999999999999999997662    148999999999999999999999987654321     146


Q ss_pred             hchHHHhhccCChHHHHHHHHhhhccCc
Q 031498           81 LKTWDADFVKVDQNTLFDLILAANYLNI  108 (158)
Q Consensus        81 ~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i  108 (158)
                      +++||.+|++++.+.|++|+.||+||+|
T Consensus        77 ~~~wD~~F~~~d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       77 IPTWDAEFLKIDQETLFELILAANYLDI  104 (104)
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            8999999999999999999999999997

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.84  E-value=6.1e-21  Score=118.15  Aligned_cols=61  Identities=51%  Similarity=0.756  Sum_probs=54.4

Q ss_pred             CcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCCCC-ceecCCCCHHHHHHHHHHHHHhcc
Q 031498            5 KKITLKSSDGETFEVEETVALESQTIKHMVEDDCADT-VIPLPNVTSTILSKVIEYCKKHVE   65 (158)
Q Consensus         5 ~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~~~~-~Ipl~~i~~~~L~~Ii~~~~~~~~   65 (158)
                      .+|+|+|+||++|.|++++|++|++|++|+++.+... +||||+|++++|++|++||+||++
T Consensus         1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~H~~   62 (62)
T PF03931_consen    1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEHHKN   62 (62)
T ss_dssp             -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHHhcCC
Confidence            3699999999999999999999999999999877433 699999999999999999999963

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=99.80  E-value=1.3e-19  Score=118.70  Aligned_cols=92  Identities=26%  Similarity=0.414  Sum_probs=80.6

Q ss_pred             CCcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-----CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCc
Q 031498            4 EKKITLKSSDGETFEVEETVALESQTIKHMVEDDC-----ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE   78 (158)
Q Consensus         4 ~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~-----~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~   78 (158)
                      +.+|+|+|+||++|.+.+++|..|++||.|+.+.+     ..+.+.+++|+|-+|+||++|+.+...+..        ..
T Consensus        16 ~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~--------~s   87 (112)
T KOG3473|consen   16 SMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTN--------SS   87 (112)
T ss_pred             hhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeecc--------cc
Confidence            67999999999999999999999999999999765     356799999999999999999999766543        23


Q ss_pred             chhchHHHhhccCChHHHHHHHHhhhccCc
Q 031498           79 DDLKTWDADFVKVDQNTLFDLILAANYLNI  108 (158)
Q Consensus        79 ~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i  108 (158)
                      ..+|+|     .+.++..++||.|||||++
T Consensus        88 ~eiPeF-----~IppemaleLL~aAn~Lec  112 (112)
T KOG3473|consen   88 TEIPEF-----DIPPEMALELLMAANYLEC  112 (112)
T ss_pred             ccCCCC-----CCCHHHHHHHHHHhhhhcC
Confidence            567776     5899999999999999974

>PHA02713 hypothetical protein; Provisional

Probab=99.04  E-value=1.6e-09  Score=93.01  Aligned_cols=102  Identities=17%  Similarity=0.258  Sum_probs=85.7

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC----CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcch
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDC----ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDD   80 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~----~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~   80 (158)
                      .|+|...+|+.|.+++.+ |.+|++++.||...-    ....|.|++++..+|+.|++|++...                
T Consensus        27 DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~----------------   90 (557)
T PHA02713         27 DVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH----------------   90 (557)
T ss_pred             CEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC----------------
Confidence            578888779999999998 568999999997542    14568999999999999999999841                


Q ss_pred             hchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHh
Q 031498           81 LKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRK  133 (158)
Q Consensus        81 ~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~  133 (158)
                                ++.+.+.+|+.||++|+|+.|.+.||.++...+.-.+--+|..
T Consensus        91 ----------i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~  133 (557)
T PHA02713         91 ----------ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYH  133 (557)
T ss_pred             ----------CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHH
Confidence                      3567899999999999999999999999998887766555543

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=98.98  E-value=6.5e-09  Score=70.23  Aligned_cols=93  Identities=20%  Similarity=0.353  Sum_probs=76.1

Q ss_pred             CcEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC--CC--CceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 031498            5 KKITLKSSDGETFEVEETVA-LESQTIKHMVEDDC--AD--TVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTED   79 (158)
Q Consensus         5 ~~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~--~~--~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~   79 (158)
                      ..++|+..||+.|.|++.++ .+|+++++++...+  ..  ..|++++++...++.+++||+....              
T Consensus        11 ~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~--------------   76 (111)
T PF00651_consen   11 SDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEI--------------   76 (111)
T ss_dssp             --EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEE--------------
T ss_pred             CCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcc--------------
Confidence            46889999999999999985 67999999999773  22  2588899999999999999966421              


Q ss_pred             hhchHHHhhccCC-hHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 031498           80 DLKTWDADFVKVD-QNTLFDLILAANYLNIKGLLDLTCQTVAD  121 (158)
Q Consensus        80 ~~~~wd~~Fl~~~-~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~  121 (158)
                                .++ .+.+.+++.+|++|+++.|.+.|+.++..
T Consensus        77 ----------~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~  109 (111)
T PF00651_consen   77 ----------EINSDENVEELLELADKLQIPELKKACEKFLQE  109 (111)
T ss_dssp             ----------EEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             ----------cCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence                      123 67799999999999999999999999864

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA03098 kelch-like protein; Provisional

Probab=98.87  E-value=1.7e-08  Score=85.91  Aligned_cols=100  Identities=20%  Similarity=0.311  Sum_probs=81.5

Q ss_pred             cEEEE-cCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhch
Q 031498            6 KITLK-SSDGETFEVEETVA-LESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKT   83 (158)
Q Consensus         6 ~i~l~-s~DG~~f~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (158)
                      .++|. +.+|+.|.+++.++ ..|++++.|+...-....|.|+. +..+|+.|++|++...                   
T Consensus        11 Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~~~i~l~~-~~~~~~~~l~y~Ytg~-------------------   70 (534)
T PHA03098         11 DESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENEINLNI-DYDSFNEVIKYIYTGK-------------------   70 (534)
T ss_pred             CEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCCceEEecC-CHHHHHHHHHHhcCCc-------------------
Confidence            35555 46899999999995 56999999998653356788988 9999999999999853                   


Q ss_pred             HHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHH
Q 031498           84 WDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEE  130 (158)
Q Consensus        84 wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~ee  130 (158)
                           +.++.+++.+|+.||++|+++.|.+.|++++...+.-.+.-+
T Consensus        71 -----~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~  112 (534)
T PHA03098         71 -----INITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCID  112 (534)
T ss_pred             -----eEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHH
Confidence                 246778899999999999999999999999988776554333

>PHA02790 Kelch-like protein; Provisional

Probab=98.86  E-value=5.7e-09  Score=88.11  Aligned_cols=96  Identities=11%  Similarity=0.150  Sum_probs=75.5

Q ss_pred             EEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC--CCCceec--CCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhc
Q 031498            8 TLKSSDGETFEVEETV-ALESQTIKHMVEDDC--ADTVIPL--PNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLK   82 (158)
Q Consensus         8 ~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~--~~~~Ipl--~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~   82 (158)
                      .+...-|++|.+++.+ |..|++++.||...-  ....|.+  .+++..+|+.|++|++..+                  
T Consensus        24 ~~~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~------------------   85 (480)
T PHA02790         24 TIIEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGK------------------   85 (480)
T ss_pred             eEEEEcCcEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeee------------------
Confidence            3445678999999999 678999999997542  1223443  3899999999999997743                  


Q ss_pred             hHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCC
Q 031498           83 TWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKT  127 (158)
Q Consensus        83 ~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks  127 (158)
                            +.++.+++.+|+.||++|+|+.+++.||+++...|.-.+
T Consensus        86 ------l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~N  124 (480)
T PHA02790         86 ------VYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEY  124 (480)
T ss_pred             ------EEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcch
Confidence                  346778899999999999999999999998877665443

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=98.73  E-value=4.3e-08  Score=62.77  Aligned_cols=82  Identities=22%  Similarity=0.335  Sum_probs=67.8

Q ss_pred             cCCCCeEEecHHHHH-HhHHHHHHHHhCC---CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchHHH
Q 031498           11 SSDGETFEVEETVAL-ESQTIKHMVEDDC---ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDA   86 (158)
Q Consensus        11 s~DG~~f~v~~~~a~-~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~wd~   86 (158)
                      ..+|+.|.+++.++. .|++++.++....   ....|++++++..+++.+++|++...-                     
T Consensus         5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~---------------------   63 (90)
T smart00225        5 VVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKL---------------------   63 (90)
T ss_pred             EECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCcee---------------------
Confidence            457799999999865 5899999998653   356788999999999999999997421                     


Q ss_pred             hhccCChHHHHHHHHhhhccCchhHHHHHH
Q 031498           87 DFVKVDQNTLFDLILAANYLNIKGLLDLTC  116 (158)
Q Consensus        87 ~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~  116 (158)
                         .++...+.+++.+|++++++.|.+.|+
T Consensus        64 ---~~~~~~~~~l~~~a~~~~~~~l~~~c~   90 (90)
T smart00225       64 ---DLPEENVEELLELADYLQIPGLVELCE   90 (90)
T ss_pred             ---ecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence               234457899999999999999999874

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.61  E-value=1.6e-07  Score=80.99  Aligned_cols=93  Identities=20%  Similarity=0.345  Sum_probs=78.5

Q ss_pred             EEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC---CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhc
Q 031498            7 ITLKSSDGETFEVEETV-ALESQTIKHMVEDDC---ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLK   82 (158)
Q Consensus         7 i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~   82 (158)
                      +.|.- +|+.|.+++.+ |.+|++++.|+...-   ....|.+.+|+..+|+.+++|++...                  
T Consensus        39 v~L~v-~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~------------------   99 (571)
T KOG4441|consen   39 VTLLV-GDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGK------------------   99 (571)
T ss_pred             EEEEE-CCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcce------------------
Confidence            44444 44999999998 677999999998532   46778999999999999999999864                  


Q ss_pred             hHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhc
Q 031498           83 TWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK  124 (158)
Q Consensus        83 ~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~  124 (158)
                            +.++.+++-+|+.||.+|+|+.+.+.||.++...+.
T Consensus       100 ------i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~  135 (571)
T KOG4441|consen  100 ------LEISEDNVQELLEAASLLQIPEVVDACCEFLESQLD  135 (571)
T ss_pred             ------EEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence                  357889999999999999999999999999876544

>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=97.24  E-value=0.00055  Score=56.20  Aligned_cols=104  Identities=16%  Similarity=0.274  Sum_probs=82.4

Q ss_pred             cCCCCeEEecHHHHHHhHHHHHHHHhCC---C----CCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhch
Q 031498           11 SSDGETFEVEETVALESQTIKHMVEDDC---A----DTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKT   83 (158)
Q Consensus        11 s~DG~~f~v~~~~a~~S~~l~~~l~~~~---~----~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (158)
                      ..=|.+.++++--+.||+++..|+.+.-   .    .-.||=|+|+...|..++-=+++-.                   
T Consensus        75 ~alg~eWrlHk~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dE-------------------  135 (488)
T KOG4682|consen   75 EALGFEWRLHKPYLFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDE-------------------  135 (488)
T ss_pred             hhccceeeeeeeeeeccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhh-------------------
Confidence            4558999999999999999999998652   1    2246668999999999988776621                   


Q ss_pred             HHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCC
Q 031498           84 WDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDF  141 (158)
Q Consensus        84 wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~  141 (158)
                           +.|+.+.+..++.||.+|..++|.+-|...+.+.|+-+|+   .+++....-+
T Consensus       136 -----veI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta---~~yYea~ckY  185 (488)
T KOG4682|consen  136 -----VEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTA---CGYYEAACKY  185 (488)
T ss_pred             -----eeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhh---hHhhhhhhhh
Confidence                 3588999999999999999999999999998887766663   4455444333

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=97.02  E-value=0.012  Score=45.25  Aligned_cols=101  Identities=19%  Similarity=0.350  Sum_probs=79.1

Q ss_pred             CCCCcEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-----CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCC
Q 031498            2 SSEKKITLKSSDGETFEVEETVA-LESQTIKHMVEDDC-----ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDK   75 (158)
Q Consensus         2 ~~~~~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~-----~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~   75 (158)
                      .++..++| --.|.+|.-++.-+ ++.+.++.|++..-     ..+.|=+ +=+..-+..|+.||+-....         
T Consensus         2 ~~~~~vkL-nvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~---------   70 (230)
T KOG2716|consen    2 SMSETVKL-NVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVD---------   70 (230)
T ss_pred             CccceEEE-ecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhccccc---------
Confidence            44566775 34688999988875 67999999998652     2455666 67899999999999864221         


Q ss_pred             CCcchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCC
Q 031498           76 STEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGK  126 (158)
Q Consensus        76 ~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~k  126 (158)
                           +|+        +...|-+|+.-|.|..+++|+++|...++..+++.
T Consensus        71 -----LPe--------~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~  108 (230)
T KOG2716|consen   71 -----LPE--------SEKELKELLREAEFYLLDGLVELCQSAIARLIRGY  108 (230)
T ss_pred             -----Ccc--------chHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCc
Confidence                 222        56789999999999999999999999999988775

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=96.58  E-value=0.023  Score=47.22  Aligned_cols=119  Identities=14%  Similarity=0.249  Sum_probs=86.1

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC---CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCC------C-
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDC---ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKD------D-   74 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~------~-   74 (158)
                      .++++-.| +.|..++-+ |..|.++|.|+=+.-   ....|||+.-++..++.+++|++..+-+-.-..++      + 
T Consensus        46 DVtfvve~-~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~Lsl  124 (620)
T KOG4350|consen   46 DVTFVVED-TRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSL  124 (620)
T ss_pred             ceEEEEec-cccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHHHH
Confidence            47777766 889999988 567999999986542   35679998888999999999999876543221111      1 


Q ss_pred             ------CCCcchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHH
Q 031498           75 ------KSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIR  132 (158)
Q Consensus        75 ------~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir  132 (158)
                            ......++++-.+.  +..++++-++.||.+.+.+.|.++||.++     ++.+.++.
T Consensus       125 Ah~Ygf~~Le~aiSeYl~~i--L~~~NvCmifdaA~ly~l~~Lt~~C~mfm-----DrnA~~lL  181 (620)
T KOG4350|consen  125 AHRYGFIQLETAISEYLKEI--LKNENVCMIFDAAYLYQLTDLTDYCMMFM-----DRNADQLL  181 (620)
T ss_pred             HHhcCcHHHHHHHHHHHHHH--HcccceeeeeeHHHHhcchHHHHHHHHHH-----hcCHHhhh
Confidence                  11223334443333  46678899999999999999999999887     56666663

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=96.34  E-value=0.0047  Score=49.51  Aligned_cols=87  Identities=13%  Similarity=0.253  Sum_probs=61.8

Q ss_pred             CCeEEecHHHH-HHhHHHHHHHHh---C-CCCCceecC-CCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchHHHh
Q 031498           14 GETFEVEETVA-LESQTIKHMVED---D-CADTVIPLP-NVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDAD   87 (158)
Q Consensus        14 G~~f~v~~~~a-~~S~~l~~~l~~---~-~~~~~Ipl~-~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~   87 (158)
                      .+.|..+++.+ ...++++..+..   . ...++|+|. .-+=.|++=+++|++.    ..+                  
T Consensus        13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~----~~p------------------   70 (317)
T PF11822_consen   13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKG----EPP------------------   70 (317)
T ss_pred             ceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhc----CCC------------------
Confidence            36799999985 669999999964   2 234456652 2344455555555544    222                  


Q ss_pred             hccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhc
Q 031498           88 FVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK  124 (158)
Q Consensus        88 Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~  124 (158)
                        .++++++..++.-|+||+|++|++.|-+|+...+.
T Consensus        71 --~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~  105 (317)
T PF11822_consen   71 --SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMS  105 (317)
T ss_pred             --cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHH
Confidence              36788899999999999999999999998865543

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=94.68  E-value=0.11  Score=46.90  Aligned_cols=107  Identities=18%  Similarity=0.240  Sum_probs=77.0

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-CCCcee--cCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhc
Q 031498            7 ITLKSSDGETFEVEETVA-LESQTIKHMVEDDC-ADTVIP--LPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLK   82 (158)
Q Consensus         7 i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~-~~~~Ip--l~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~   82 (158)
                      ..++..||++|..++.++ ..+.++..|+...- +...|.  +--++++.|+-|++|++.-  +..              
T Consensus       713 ~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~--d~~--------------  776 (1267)
T KOG0783|consen  713 TVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSD--DKV--------------  776 (1267)
T ss_pred             EEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHcc--chH--------------
Confidence            456667999999999984 56899999987532 111122  2235699999999998852  111              


Q ss_pred             hHHHhhcc--CChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHh
Q 031498           83 TWDADFVK--VDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRK  133 (158)
Q Consensus        83 ~wd~~Fl~--~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~  133 (158)
                          +|++  ...+-++++|..|+-|=|..|-++|-+.+-+++.=|+...+-+
T Consensus       777 ----~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~lle  825 (1267)
T KOG0783|consen  777 ----ELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLE  825 (1267)
T ss_pred             ----HHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHH
Confidence                1222  3456689999999999999999999999999888887655543

>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.85  E-value=0.13  Score=38.07  Aligned_cols=31  Identities=42%  Similarity=0.664  Sum_probs=27.0

Q ss_pred             CchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCC
Q 031498          107 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFS  142 (158)
Q Consensus       107 ~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t  142 (158)
                      +|--|.++||+..     |.-+.+||+.||||+||.
T Consensus       170 nI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d  200 (203)
T KOG3433|consen  170 NIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD  200 (203)
T ss_pred             hHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence            7778888888876     889999999999999874

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=93.33  E-value=0.091  Score=34.33  Aligned_cols=80  Identities=13%  Similarity=0.240  Sum_probs=54.6

Q ss_pred             CCCeEEecHHHHHH--hHHHHHHHHhC------CCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498           13 DGETFEVEETVALE--SQTIKHMVEDD------CADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW   84 (158)
Q Consensus        13 DG~~f~v~~~~a~~--S~~l~~~l~~~------~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w   84 (158)
                      .|+.|.++++.+..  ..++..++...      ...+++-+ +=++..++.|+.|++..  ...+               
T Consensus         6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~--~~l~---------------   67 (94)
T PF02214_consen    6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTG--GKLP---------------   67 (94)
T ss_dssp             TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHT--SSB----------------
T ss_pred             CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhc--CccC---------------
Confidence            58999999998763  45677777743      13455655 67999999999999995  1110               


Q ss_pred             HHhhccCChHHHHHHHHhhhccCchhH-HHHH
Q 031498           85 DADFVKVDQNTLFDLILAANYLNIKGL-LDLT  115 (158)
Q Consensus        85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L-~~~~  115 (158)
                           .-+...+..++..|.|.+|+.| ++.|
T Consensus        68 -----~~~~~~~~~l~~Ea~fy~l~~l~i~~c   94 (94)
T PF02214_consen   68 -----IPDEICLEELLEEAEFYGLDELFIEDC   94 (94)
T ss_dssp             -------TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred             -----CCCchhHHHHHHHHHHcCCCccccCCC
Confidence                 0123456788999999999999 6654

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]

Probab=91.27  E-value=0.2  Score=37.00  Aligned_cols=31  Identities=42%  Similarity=0.692  Sum_probs=24.8

Q ss_pred             CchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCC
Q 031498          107 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFS  142 (158)
Q Consensus       107 ~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t  142 (158)
                      +|.-|.++.|+..     +.-++|||+.||||.||.
T Consensus       174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld  204 (209)
T COG5124         174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLD  204 (209)
T ss_pred             hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchh
Confidence            5666777666665     788999999999999863

>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]

Probab=87.75  E-value=3  Score=35.56  Aligned_cols=48  Identities=17%  Similarity=0.200  Sum_probs=38.9

Q ss_pred             CeEEecHHHH-HHhHHHHHHHHhCC---CCCceecCCCCHHHHHHHHHHHHH
Q 031498           15 ETFEVEETVA-LESQTIKHMVEDDC---ADTVIPLPNVTSTILSKVIEYCKK   62 (158)
Q Consensus        15 ~~f~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~   62 (158)
                      +.+..++-+. .-|.++..|+.+.-   ...+|.+|+|..+.+...++|++-
T Consensus       129 q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYs  180 (521)
T KOG2075|consen  129 QRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYS  180 (521)
T ss_pred             cccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhc
Confidence            6777888875 45999999997542   267899999999999999998876

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=86.51  E-value=1.2  Score=34.49  Aligned_cols=88  Identities=14%  Similarity=0.229  Sum_probs=60.4

Q ss_pred             CcEEEEcCCCCeEEecHH--HHHH-hHHHHHHHHhCCC------CCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCC
Q 031498            5 KKITLKSSDGETFEVEET--VALE-SQTIKHMVEDDCA------DTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDK   75 (158)
Q Consensus         5 ~~i~l~s~DG~~f~v~~~--~a~~-S~~l~~~l~~~~~------~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~   75 (158)
                      ++|+|- -.|+.|.-..+  +.+. -.++..|+.+.+.      .+.+-| +=++.-++-|+.|+.+..           
T Consensus         9 ~~vrln-igGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq-----------   75 (302)
T KOG1665|consen    9 SMVRLN-IGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQ-----------   75 (302)
T ss_pred             hhheee-cCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCc-----------
Confidence            345553 45777765444  3333 5677888887651      233444 678889999999998843           


Q ss_pred             CCcchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHH
Q 031498           76 STEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQ  117 (158)
Q Consensus        76 ~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~  117 (158)
                                  |...+...+++++.+|.|++|.+|.+..-.
T Consensus        76 ------------~~~~s~i~~lgvLeeArff~i~sL~~hle~  105 (302)
T KOG1665|consen   76 ------------IPSLSDIDCLGVLEEARFFQILSLKDHLED  105 (302)
T ss_pred             ------------eeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence                        122456678999999999999999987643

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=83.25  E-value=1.3  Score=33.09  Aligned_cols=41  Identities=37%  Similarity=0.363  Sum_probs=30.1

Q ss_pred             HHHHHhhhcc--CchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCC
Q 031498           97 FDLILAANYL--NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFS  142 (158)
Q Consensus        97 ~~Ll~AA~~L--~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t  142 (158)
                      .....|||.-  ||..|..+|+...     |.+.+++++.||||+||.
T Consensus       145 ~~~~~~anrwTDNI~~l~~~~~~k~-----~~~~~~i~k~f~Ip~d~d  187 (188)
T PF03962_consen  145 KIAKEAANRWTDNIFSLKSYLKKKF-----GMDEEDIRKEFGIPEDFD  187 (188)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhc-----CCCHHHHHHHcCCccccC
Confidence            3344466654  6677777776653     899999999999999873

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF05409 Peptidase_C30: Coronavirus endopeptidase C30; InterPro: IPR008740 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=83.14  E-value=3.7  Score=32.49  Aligned_cols=102  Identities=18%  Similarity=0.348  Sum_probs=59.5

Q ss_pred             ceecCCCCHHHHHHHHHHHHHhcccCCC-CCCCCCCCcchhchHHHh--hccCChHHHHHHHHhhhccCchhHHHHHHHH
Q 031498           42 VIPLPNVTSTILSKVIEYCKKHVEAGSG-DKKDDKSTEDDLKTWDAD--FVKVDQNTLFDLILAANYLNIKGLLDLTCQT  118 (158)
Q Consensus        42 ~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~--Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~  118 (158)
                      ...++..+.-.-.-|+.|++-|--...+ =..........+.+|-..  |-++..+..++.|.|..-..+.+|+...-+ 
T Consensus       162 ~~Q~~~~~~~~T~NVvA~LYAalln~~~w~l~~~~~svedFN~WA~~N~ft~~~~~~~~~~Laa~TgVsV~rlLaaI~~-  240 (293)
T PF05409_consen  162 VAQLEGADQYITDNVVAWLYAALLNGCPWWLSSQRISVEDFNEWAMNNGFTSFSSDDAFDMLAAKTGVSVERLLAAIQR-  240 (293)
T ss_dssp             SSTTTTS-SB-HHHHHHHHHHHHHTT--TTSSSS---HHHHHHHHHHTTB--SSHHHHHHHHHHHHT--HHHHHHHHHH-
T ss_pred             hhhhcCccceeehhHHHHHHHHHHcCCCeeeccceecHHHHHHHHHhCCCcccchhhHHHHHHHHhCCcHHHHHHHHHH-
Confidence            3445444555667799999988544221 011122455667888554  555788899999999999999999987766 


Q ss_pred             HHHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 031498          119 VADMIKGKTPEEIRKTFNIKNDFSPDEEE  147 (158)
Q Consensus       119 ia~~i~~ks~eeir~~f~i~~d~t~eee~  147 (158)
                      +..-..|++   |--...+++||||++--
T Consensus       241 L~~g~~G~~---IlG~~~ledE~Tp~~V~  266 (293)
T PF05409_consen  241 LHKGFGGRT---ILGSCSLEDEFTPEMVY  266 (293)
T ss_dssp             HHHTTTTT----BTTBSS--TSS-HHHHH
T ss_pred             HhcCCCCCc---ccccccccccCCHHHHh
Confidence            566556665   44455577889998753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C30 (clan PA(C)). These peptidases are related to serine endopeptidases of family S1 and are restricted to RNA viruses, where they are involved in viral polyprotein processing during replication [, , ]. This entry represents the CoV M-pro which comprises three domains. Domains I and II are six-stranded antiparallel beta barrels and together resemble the architecture of chymotrypsin and of picornaviruses 3C proteinases. The substrate-binding site is located in a cleft between these two domains. The catalytic site is situated at the centre of the cleft. A long loop connects domain II to the C-terminal domain (domain III). This latter domain, a globular cluster of five helices, has been implicated in the proteolytic activity of M-pro. In the active site of M-pro, Cys and His form a catalytic dyad. In contrast to serine proteinases and other cysteine proteinases, which have a catalytic triad, there is no third catalytic residue present [, , , ]. ; GO: 0019082 viral protein processing; PDB: 2VJ1_B 2K7X_A 2Q6D_B 2Q6F_A 1P9U_E 1LVO_B 2AMP_B 1P9S_A 2ZU2_A 3D23_A ....

>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT)

Probab=80.37  E-value=0.53  Score=33.30  Aligned_cols=46  Identities=24%  Similarity=0.356  Sum_probs=0.0

Q ss_pred             CCCeEEecHHHHHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHh
Q 031498           13 DGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH   63 (158)
Q Consensus        13 DG~~f~v~~~~a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~   63 (158)
                      ||+.|.|+..++...+.+.+.+.-     ...+|.+..+++.+++++++..
T Consensus         1 d~e~f~vv~s~l~ll~~l~~Y~~~-----~~~~P~~a~di~~~l~elLk~f   46 (135)
T PF07928_consen    1 DNEKFVVVGSALLLLKMLSDYLQL-----ASNFPSLAPDILSRLLELLKLF   46 (135)
T ss_dssp             ---------------------------------------------------
T ss_pred             CCCceecHHHHHHHHHHHHHHHHH-----HHHCchhHHHHHHHHHHHHHHH
Confidence            788888888888877777776542     1245668889999999998775

In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments []. All Vps54 homologues contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs []. ; GO: 0042147 retrograde transport, endosome to Golgi; PDB: 3N1E_B 3N1B_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
2p1m_A	160	Tir1-ask1 Complex Structure Length = 160		2e-63
3l2o_A	149	Structure-Based Mechanism Of Dimerization-Dependent		6e-47
1fqv_B	149	Insights Into Scf Ubiquitin Ligases From The Struct		8e-47
1p22_B	145	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-46
2e31_B	166	Structural Basis For Selection Of Glycosylated Subs		1e-44
2ast_A	159	Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len		1e-44
1fs1_B	141	Insights Into Scf Ubiquitin Ligases From The Struct		4e-40
3mks_A	169	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		5e-38
1ldk_D	133	Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu		8e-37
1nex_A	169	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-36
1hv2_A	99	Solution Structure Of Yeast Elongin C In Complex Wi		4e-04

>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160

Iteration: 1
 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/159 (77%), Positives = 137/159 (86%), Gaps = 3/159 (1%)
Query: 3   SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
           S KKI LKSSDGE+FEVEE VALESQTI HMVEDDC D  +PLPNVTS IL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61
Query: 63  HVEAGSGDKK---DDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119
           HVEA +   +      +++DDLK WDADF+K+DQ TLF+LILAANYLNIK LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121
Query: 120 ADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           ADMIKGKTPEEIR TFNIKNDF+P+EEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149

Iteration: 1
 Score =  182 bits (462), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 115/152 (75%), Gaps = 7/152 (4%)
Query: 7   ITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEA 66
           I L+SSDGE FEV+  +A +S TIK M+ED   D V PLPNV + IL KVI++C  H + 
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDD 62
Query: 67  GSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGK 126
             G      S  DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGK
Sbjct: 63  PGG------SGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGK 116
Query: 127 TPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           TPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct: 117 TPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 148

>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149

Iteration: 1
 Score =  182 bits (462), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 115/152 (75%), Gaps = 7/152 (4%)
Query: 7   ITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEA 66
           I L+SSDGE FEV+  +A +S TIK M+ED   D V PLPNV + IL KVI++C  H + 
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDD 62
Query: 67  GSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGK 126
             G      S  DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGK
Sbjct: 63  PGG------SGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGK 116
Query: 127 TPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           TPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct: 117 TPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 148

>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145

Iteration: 1
 Score =  181 bits (458), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/152 (62%), Positives = 115/152 (75%), Gaps = 11/152 (7%)
Query: 7   ITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEA 66
           I L+SSDGE FEV+  +A +S TIK M+ED   D V PLPNV + IL KVI++C  H   
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHH--- 59
Query: 67  GSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGK 126
                KDD    DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGK
Sbjct: 60  -----KDDPP--DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGK 112
Query: 127 TPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           TPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct: 113 TPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 144

>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166

Iteration: 1
 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/159 (57%), Positives = 117/159 (73%), Gaps = 7/159 (4%)
Query: 7   ITLKSSDGETFEVEETVALESQTIKHMVED-----DCADTVIPLPNVTSTILSKVIEYCK 61
           I L+SSDGE FEV+  +A +S TIK M+ED     +  D  +PLPNV + IL KVI++C 
Sbjct: 7   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 66
Query: 62  KH--VEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119
            H        D ++ +   DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TV
Sbjct: 67  HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 126
Query: 120 ADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           A+MIKGKTPEEIRKTFNIKNDF+ +EE +VR+ENQW  E
Sbjct: 127 ANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 165

>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141

Iteration: 1
 Score =  159 bits (403), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 84/138 (60%), Positives = 104/138 (75%), Gaps = 3/138 (2%)
Query: 7   ITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH--V 64
           I L+SSDGE FEV+  +A +S TIK M+ED   D V PLPNV + IL KVI++C  H   
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDD 62
Query: 65  EAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK 124
                D ++ +   DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIK
Sbjct: 63  PPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 122
Query: 125 GKTPEEIRKTFNIKNDFS 142
           GKTPEEIRKTFNIKNDF+
Sbjct: 123 GKTPEEIRKTFNIKNDFT 140

>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169

Iteration: 1
 Score =  152 bits (385), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 111/158 (70%), Gaps = 8/158 (5%)
Query: 7   ITLKSSDGETFEVEETVALESQTIKHMVED-------DCADTVIPLPNVTSTILSKVIEY 59
           + L S +GE F V++ +A  S  +K+ + D       D  + V+P+PNV S++L KVIE+
Sbjct: 9   VVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEW 68
Query: 60  CKKHVEAGSGDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQT 118
            + H ++   D+ DD S +   + +WD +F+KVDQ  L+++ILAANYLNIK LLD  C+ 
Sbjct: 69  AEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKV 128
Query: 119 VADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 156
           VA+MI+G++PEEIR+TFNI NDF+P+EE  +RREN+WA
Sbjct: 129 VAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166

>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133

Iteration: 1
 Score =  149 bits (375), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 98/132 (74%), Gaps = 3/132 (2%)
Query: 7   ITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKH--V 64
           I L+SSDGE FEV+  +A +S TIK M+ED   D V PLPNV + IL KVI++C  H   
Sbjct: 3   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDD 61
Query: 65  EAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK 124
                D ++ +   DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIK
Sbjct: 62  PPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 121
Query: 125 GKTPEEIRKTFN 136
           GKTPEEIRKTFN
Sbjct: 122 GKTPEEIRKTFN 133

>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169

Iteration: 1
 Score =  146 bits (368), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 108/158 (68%), Gaps = 8/158 (5%)
Query: 7   ITLKSSDGETFEVEETVALESQTIKHMVEDDCADT-------VIPLPNVTSTILSKVIEY 59
           + L S +GE F V++ +A  S  +K+ + D   D        V P+PNV S++L KVIE+
Sbjct: 9   VVLVSGEGERFTVDKKIAERSLLLKNYLNDXGDDDDEDDDEIVXPVPNVRSSVLQKVIEW 68
Query: 60  CKKHVEAGSGDKKDDKSTED-DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQT 118
            + H ++   D+ DD S +   + +WD +F+KVDQ  L+++ILAANYLNIK LLD  C+ 
Sbjct: 69  AEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEXLYEIILAANYLNIKPLLDAGCKV 128
Query: 119 VADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWA 156
           VA+ I+G++PEEIR+TFNI NDF+P+EE  +RREN+WA
Sbjct: 129 VAEXIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166

>pdb|1HV2|A Chain A, Solution Structure Of Yeast Elongin C In Complex With A Von Hippel-Lindau Peptide Length = 99

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 3   SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADT--VIPLPNVTSTILSKVIEYC 60
           S+  +TL S D + +E+  + A+ S T+K M+E    ++   I L    S IL K +EY 
Sbjct: 2   SQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYL 61
Query: 61  KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNI 108
             +++     + DD+  E ++ T              +L+LAA+YL+I
Sbjct: 62  NYNLKYSGVSEDDDEIPEFEIPT----------EMSLELLLAADYLSI 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	5e-59
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	7e-57
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	8e-54
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	9e-53
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	2e-36
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	8e-29
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	2e-28

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160

 Score =  180 bits (456), Expect = 5e-59
 Identities = 123/159 (77%), Positives = 137/159 (86%), Gaps = 3/159 (1%)

Query: 3   SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK 62
           S KKI LKSSDGE+FEVEE VALESQTI HMVEDDC D  +PLPNVTS IL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVEAGSGDKKDD---KSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV 119
           HVEA +   +      +++DDLK WDADF+K+DQ TLF+LILAANYLNIK LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 120 ADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
           ADMIKGKTPEEIR TFNIKNDF+P+EEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169

 Score =  174 bits (442), Expect = 7e-57
 Identities = 74/164 (45%), Positives = 112/164 (68%), Gaps = 8/164 (4%)

Query: 3   SEKKITLKSSDGETFEVEETVALESQTIKHMV-------EDDCADTVIPLPNVTSTILSK 55
               + L S +GE F V++ +A  S  +K+ +       ++D  + V+P+PNV S++L K
Sbjct: 5   VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQK 64

Query: 56  VIEYCKKHVEAGSGDKKDDKS-TEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDL 114
           VIE+ + H ++   D+ DD S     + +WD +F+KVDQ  L+++ILAANYLNIK LLD 
Sbjct: 65  VIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDA 124

Query: 115 TCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158
            C+ VA+MI+G++PEEIR+TFNI NDF+P+EE  +RREN+WA +
Sbjct: 125 GCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWAED 168

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141

 Score =  163 bits (413), Expect = 9e-53
 Identities = 83/139 (59%), Positives = 104/139 (74%), Gaps = 3/139 (2%)

Query: 6   KITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHV- 64
            I L+SSDGE FEV+  +A +S TIK M+ED   D  +PLPNV + IL KVI++C  H  
Sbjct: 3   SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-VPLPNVNAAILKKVIQWCTHHKD 61

Query: 65  -EAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 123
                 D ++ +   DD+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MI
Sbjct: 62  DPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMI 121

Query: 124 KGKTPEEIRKTFNIKNDFS 142
           KGKTPEEIRKTFNIKNDF+
Sbjct: 122 KGKTPEEIRKTFNIKNDFT 140

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99

 Score =  120 bits (302), Expect = 2e-36
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 12/108 (11%)

Query: 3   SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDC--ADTVIPLPNVTSTILSKVIEYC 60
           S+  +TL S D + +E+  + A+ S T+K M+E     +   I L    S IL K +EY 
Sbjct: 2   SQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYL 61

Query: 61  KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNI 108
             +++     + DD            +F ++      +L+LAA+YL+I
Sbjct: 62  NYNLKYSGVSEDDD---------EIPEF-EIPTEMSLELLLAADYLSI 99

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112

 Score =  101 bits (253), Expect = 8e-29
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 18/109 (16%)

Query: 4   EKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADT-----VIPLPNVTSTILSKVIE 58
              + L SSDG  F V+   AL S TIK M+             +    + S +LSKV  
Sbjct: 16  AMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCM 75

Query: 59  YCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLN 107
           Y    V       +   S+ +       +F  +      +L++AAN+L+
Sbjct: 76  YFTYKV-------RYTNSSTE-----IPEF-PIAPEIALELLMAANFLD 111

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Length = 96

 Score = 99.8 bits (249), Expect = 2e-28
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 18/106 (16%)

Query: 7   ITLKSSDGETFEVEETVALESQTIKHMVEDDCADT-----VIPLPNVTSTILSKVIEYCK 61
           + L SSDG  F V+   AL S TIK M+             +    + S +LSKV  Y  
Sbjct: 3   VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62

Query: 62  KHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLN 107
             V       +   S+ +       +F  +      +L++AAN+L+
Sbjct: 63  YKV-------RYTNSSTE-----IPEF-PIAPEIALELLMAANFLD 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	100.0
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	100.0
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	100.0
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	100.0
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	99.96
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	99.95
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	99.95
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.93
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.31
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.28
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.24
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.18
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.18
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.18
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.17
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.16
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.15
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.13
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.1
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.09
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.09
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.0
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	98.99
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	98.98
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	98.9
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	98.89
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	98.89
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	98.83
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	95.83
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	88.28
3tnt_A	306	SARS coronavirus main protease; 3C-like protease,	85.56
3tlo_A	303	3CL-Pro, 3CLP, 3C-like proteinase; hydrolysis, hyd	81.65
3d23_B	302	3C-like proteinase; main protease, ATP-binding, en	80.95
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	80.02

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=100.00  E-value=2.4e-57  Score=332.28  Aligned_cols=157  Identities=48%  Similarity=0.854  Sum_probs=134.0

Q ss_pred             CCCCCcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----C--CceecCCCCHHHHHHHHHHHHHhcccCCCCC-C
Q 031498            1 MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCA-----D--TVIPLPNVTSTILSKVIEYCKKHVEAGSGDK-K   72 (158)
Q Consensus         1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~~-----~--~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~-~   72 (158)
                      || +++|+|+|+||++|.|++.+|.+|++|++|+++.+.     +  .+||||+|++.+|++|++||+||+.++.+.. .
T Consensus         4 m~-~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~   82 (169)
T 3v7d_A            4 MV-TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDD   82 (169)
T ss_dssp             ---CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC---
T ss_pred             CC-CCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccc
Confidence            66 689999999999999999999999999999997653     3  7899999999999999999999998875432 1


Q ss_pred             CCCCCcchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHHh
Q 031498           73 DDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRE  152 (158)
Q Consensus        73 ~~~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~eee~~i~~e  152 (158)
                      ...+....+++||++|++++++.||+||.|||||+|++|+++||++||++|+||||+|||++|||++|||||||+++|+|
T Consensus        83 ~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~e  162 (169)
T 3v7d_A           83 DDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRE  162 (169)
T ss_dssp             -----CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTT
T ss_pred             ccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence            23345677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccC
Q 031498          153 NQWAFE  158 (158)
Q Consensus       153 ~~w~~~  158 (158)
                      |+|+||
T Consensus       163 n~W~~~  168 (169)
T 3v7d_A          163 NEWAED  168 (169)
T ss_dssp             C-----
T ss_pred             cccccc
Confidence            999996

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=100.00  E-value=1.4e-55  Score=320.65  Aligned_cols=157  Identities=79%  Similarity=1.201  Sum_probs=89.3

Q ss_pred             CCCCCcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCC---CCC
Q 031498            1 MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDD---KST   77 (158)
Q Consensus         1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~---~~~   77 (158)
                      |+ +++|+|+|+||+.|.|++.+|.+|++|++|+++.+...+||||+|++.+|++|++||+||+.++.+.....   ...
T Consensus         1 ~~-~~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~   79 (160)
T 2p1m_A            1 MS-AKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATS   79 (160)
T ss_dssp             --------CCC---------CHHHHTCTTTC------------CCTTSCHHHHHHHHHC---------------------
T ss_pred             CC-CCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence            44 67999999999999999999999999999999876677999999999999999999999998764322111   235


Q ss_pred             cchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHHhccccc
Q 031498           78 EDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAF  157 (158)
Q Consensus        78 ~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~eee~~i~~e~~w~~  157 (158)
                      ...+++||++|++++.+.|++|+.|||||+|++|+++||++||++|+|||++|||++|||++|||||||++||+||+|+|
T Consensus        80 ~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~en~w~~  159 (160)
T 2p1m_A           80 DDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAF  159 (160)
T ss_dssp             ---------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCcccc
Confidence            67799999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 031498          158 E  158 (158)
Q Consensus       158 ~  158 (158)
                      |
T Consensus       160 ~  160 (160)
T 2p1m_A          160 E  160 (160)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=100.00  E-value=6.8e-48  Score=274.81  Aligned_cols=137  Identities=60%  Similarity=0.949  Sum_probs=111.9

Q ss_pred             cEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCC--CCCCcchhch
Q 031498            6 KITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKD--DKSTEDDLKT   83 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~--~~~~~~~~~~   83 (158)
                      .|+|+|+||++|.|++.+|.+|++|++|+++.| .++||||+|++.+|++|++||+||+.++.+...+  .......+++
T Consensus         3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~   81 (141)
T 1fs1_B            3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPV   81 (141)
T ss_dssp             EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------H
T ss_pred             eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhH
Confidence            599999999999999999999999999999876 7799999999999999999999999876543221  1245677999


Q ss_pred             HHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCH
Q 031498           84 WDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSP  143 (158)
Q Consensus        84 wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~  143 (158)
                      ||++|++++.+.|++|+.|||||+|++|+++||++||++|+|||++|||++|||++||||
T Consensus        82 wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp  141 (141)
T 1fs1_B           82 WDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE  141 (141)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999997

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=99.96  E-value=8.3e-30  Score=171.03  Aligned_cols=97  Identities=30%  Similarity=0.501  Sum_probs=83.9

Q ss_pred             CCCCCcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC--CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCc
Q 031498            1 MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDC--ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE   78 (158)
Q Consensus         1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~--~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~   78 (158)
                      |+ +++|+|+|+||++|.|++.+|.+|++|++|+++..  ..++||||+|++.+|++|++||+||+.++.+.     ...
T Consensus         1 m~-~~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~-----~~~   74 (99)
T 1hv2_A            1 MS-QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVS-----EDD   74 (99)
T ss_dssp             CC-CSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHC-----SSC
T ss_pred             CC-CcEEEEEecCCCEEEECHHHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCc-----ccc
Confidence            67 77999999999999999999999999999999743  23789999999999999999999999765421     123


Q ss_pred             chhchHHHhhccCChHHHHHHHHhhhccCc
Q 031498           79 DDLKTWDADFVKVDQNTLFDLILAANYLNI  108 (158)
Q Consensus        79 ~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i  108 (158)
                      ..+++|     +++++.||+|+.|||||+|
T Consensus        75 ~~i~~w-----~vd~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           75 DEIPEF-----EIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             SSCCCC-----CCCHHHHHHHHHHHHHHCC
T ss_pred             ccCCCc-----cCCHHHHHHHHHHHHHhCc
Confidence            457777     6899999999999999997

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=99.95  E-value=2.8e-28  Score=166.80  Aligned_cols=93  Identities=28%  Similarity=0.417  Sum_probs=79.7

Q ss_pred             CCCcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----CCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 031498            3 SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDCA-----DTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKST   77 (158)
Q Consensus         3 ~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~~-----~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~   77 (158)
                      ++++|+|+|+||++|.|++.+|.+|++|++|+++.+.     ..+||||+|++.+|++|++||+||+.++..        
T Consensus        15 ~~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~--------   86 (112)
T 1vcb_B           15 DAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNS--------   86 (112)
T ss_dssp             --CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSC--------
T ss_pred             CCCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCC--------
Confidence            4678999999999999999999999999999987542     358999999999999999999999976432        


Q ss_pred             cchhchHHHhhccCChHHHHHHHHhhhccCc
Q 031498           78 EDDLKTWDADFVKVDQNTLFDLILAANYLNI  108 (158)
Q Consensus        78 ~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i  108 (158)
                      ...+++|     +++++.||+||.|||||+|
T Consensus        87 ~~~i~~w-----~vd~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           87 STEIPEF-----PIAPEIALELLMAANFLDC  112 (112)
T ss_dssp             SSCCCCC-----CCCHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCc-----ccCHHHHHHHHHHHHHhCc
Confidence            2346777     6899999999999999997

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=99.95  E-value=2.8e-28  Score=162.73  Aligned_cols=91  Identities=29%  Similarity=0.425  Sum_probs=78.9

Q ss_pred             CcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----CCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 031498            5 KKITLKSSDGETFEVEETVALESQTIKHMVEDDCA-----DTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTED   79 (158)
Q Consensus         5 ~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~~-----~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~   79 (158)
                      ++|+|+|+||++|.|++.+|.+|++|++|+++.|.     .++||||+|++.+|++|++||+||+.++.+        ..
T Consensus         1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~--------~~   72 (96)
T 2fnj_C            1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNS--------ST   72 (96)
T ss_dssp             CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSC--------CS
T ss_pred             CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCC--------cc
Confidence            47999999999999999999999999999997542     358999999999999999999999876432        23


Q ss_pred             hhchHHHhhccCChHHHHHHHHhhhccCc
Q 031498           80 DLKTWDADFVKVDQNTLFDLILAANYLNI  108 (158)
Q Consensus        80 ~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i  108 (158)
                      .+++|     +++++.||+|+.|||||+|
T Consensus        73 ~i~~w-----~vd~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           73 EIPEF-----PIAPEIALELLMAANFLDC   96 (96)
T ss_dssp             CCCCC-----CCCTTTHHHHHHHHHHHTC
T ss_pred             cCCCc-----ccCHHHHHHHHHHHHHhCc
Confidence            46777     6899999999999999997

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.93  E-value=5.5e-26  Score=151.87  Aligned_cols=90  Identities=29%  Similarity=0.435  Sum_probs=78.2

Q ss_pred             cEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-----CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcch
Q 031498            6 KITLKSSDGETFEVEETVALESQTIKHMVEDDC-----ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDD   80 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~-----~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~   80 (158)
                      +|+|+|+||++|.|++.+|.+|++|++|+++.|     ...+||||+|++.+|++|++||+||+.++..        ...
T Consensus         3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~--------~~~   74 (97)
T 4ajy_C            3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNS--------STE   74 (97)
T ss_dssp             EEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTC--------CSC
T ss_pred             EEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCC--------cCC
Confidence            799999999999999999999999999998754     2678999999999999999999999876532        245


Q ss_pred             hchHHHhhccCChHHHHHHHHhhhccCc
Q 031498           81 LKTWDADFVKVDQNTLFDLILAANYLNI  108 (158)
Q Consensus        81 ~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i  108 (158)
                      +++|     +++++.+++|+.||+||+.
T Consensus        75 i~~~-----~i~~~~l~eLl~AAnyL~~   97 (97)
T 4ajy_C           75 IPEF-----PIAPEIALELLMAANFLDC   97 (97)
T ss_dssp             CCCC-----CCCGGGHHHHHHHHHHHTC
T ss_pred             CCcC-----cCCHHHHHHHHHHHhhhCC
Confidence            6788     5899999999999999983

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.31  E-value=2.4e-12  Score=89.98  Aligned_cols=97  Identities=18%  Similarity=0.226  Sum_probs=74.6

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW   84 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w   84 (158)
                      .|+|+. +|+.|.+++.+ +..|+++++|+.... ...|.|++++..+++.+++|++...                    
T Consensus        27 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~-~~~i~l~~~~~~~f~~lL~fiYtg~--------------------   84 (135)
T 2yy9_A           27 DATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGT-GGSVVLPAGFAEIFGLLLDFFYTGH--------------------   84 (135)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHTCC-----CCEEECGGGHHHHHHHHHHHHHSC--------------------
T ss_pred             ceEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCC-CCeEEeCCCCHHHHHHHHHHHhCCC--------------------
Confidence            466765 68999999998 567999999997643 5679999999999999999999853                    


Q ss_pred             HHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCH
Q 031498           85 DADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP  128 (158)
Q Consensus        85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~  128 (158)
                          +.++.+.+.+|+.||++|+|+.|.+.|++++...+.++++
T Consensus        85 ----~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~  124 (135)
T 2yy9_A           85 ----LALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQ  124 (135)
T ss_dssp             ----CCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC--------
T ss_pred             ----CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCC
Confidence                1345677999999999999999999999999998888765

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.28  E-value=3.5e-11  Score=80.54  Aligned_cols=93  Identities=14%  Similarity=0.195  Sum_probs=77.5

Q ss_pred             cEEEEcCCC---CeEEecHHHH-HHhHHHHHHHHhCC--CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 031498            6 KITLKSSDG---ETFEVEETVA-LESQTIKHMVEDDC--ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTED   79 (158)
Q Consensus         6 ~i~l~s~DG---~~f~v~~~~a-~~S~~l~~~l~~~~--~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~   79 (158)
                      .++|+..+|   +.|.+++.++ ..|+++++|+....  ....|.+|+++..+++.+++|++...-              
T Consensus        10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~--------------   75 (109)
T 2vkp_A           10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEI--------------   75 (109)
T ss_dssp             CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCC--------------
T ss_pred             cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCc--------------
Confidence            588888886   9999999995 68999999998542  127899999999999999999998421              


Q ss_pred             hhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 031498           80 DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADM  122 (158)
Q Consensus        80 ~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~  122 (158)
                                .++.+.+.+|+.||++++++.|.+.|.+++...
T Consensus        76 ----------~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~  108 (109)
T 2vkp_A           76 ----------DLEADTVLATLYAAKKYIVPALAKACVNFLETS  108 (109)
T ss_dssp             ----------CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----------cCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence                      245678899999999999999999999999765

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.24  E-value=8.2e-11  Score=80.47  Aligned_cols=91  Identities=19%  Similarity=0.293  Sum_probs=77.6

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW   84 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w   84 (158)
                      .++|+. +|+.|.+++.+ +..|+++++|+...  ...|.+++++..+++.+++|++...-                   
T Consensus        30 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~~-------------------   87 (121)
T 1buo_A           30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN--SQHYTLDFLSPKTFQQILEYAYTATL-------------------   87 (121)
T ss_dssp             CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHHHSCC-------------------
T ss_pred             CEEEEE-CCEEEehhHHHHhhcCHHHHHHHcCC--CcEEEeCCCCHHHHHHHHHhhcCCCc-------------------
Confidence            467765 68999999998 57899999999753  56799999999999999999998431                   


Q ss_pred             HHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHh
Q 031498           85 DADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI  123 (158)
Q Consensus        85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i  123 (158)
                           .++.+.+.+|+.||++|+++.|.+.|+.++...|
T Consensus        88 -----~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I  121 (121)
T 1buo_A           88 -----QAKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ  121 (121)
T ss_dssp             -----CCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             -----CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence                 2456779999999999999999999999997654

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.18  E-value=3e-10  Score=77.32  Aligned_cols=89  Identities=17%  Similarity=0.308  Sum_probs=74.3

Q ss_pred             cEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchh
Q 031498            6 KITLKSSDGETFEVEETVA-LESQTIKHMVEDDC---ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDL   81 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (158)
                      .++|+. +|+.|.+++.++ ..|+++++|+....   ....|.+++++..+++.+++|++...                 
T Consensus        27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~-----------------   88 (120)
T 2if5_A           27 DVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTAT-----------------   88 (120)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSC-----------------
T ss_pred             CeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCC-----------------
Confidence            466765 689999999994 67999999998542   35679999999999999999999742                 


Q ss_pred             chHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHH
Q 031498           82 KTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV  119 (158)
Q Consensus        82 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~i  119 (158)
                             +.++.+.+.+|+.||++|++++|.+.|.+++
T Consensus        89 -------~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           89 -------LTVSTANVGDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             -------CCCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence                   1245678999999999999999999999876

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.18  E-value=2.9e-10  Score=77.05  Aligned_cols=89  Identities=16%  Similarity=0.214  Sum_probs=74.0

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecC--CCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhc
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLP--NVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLK   82 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~--~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~   82 (158)
                      .++|+. +|+.|.+++.+ +..|++++.|+... ....|.|+  +++..+++.+++|++...                  
T Consensus        24 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~-~~~~i~l~~~~~~~~~f~~ll~~~Yt~~------------------   83 (116)
T 2vpk_A           24 DCTIVI-GEFQFKAHRNVLASFSEYFGAIYRST-SENNVFLDQSQVKADGFQKLLEFIYTGT------------------   83 (116)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTC-CCSCEECCTTTCCHHHHHHHHHHHHHSC------------------
T ss_pred             cEEEEE-CCEEEeccHHHHhhcCHHHHHHHcCC-CCCeEEeecCCCCHHHHHHHHHHHcCCC------------------
Confidence            466665 58999999999 47899999999865 35566666  999999999999999842                  


Q ss_pred             hHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHH
Q 031498           83 TWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA  120 (158)
Q Consensus        83 ~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia  120 (158)
                            +.++.+.+.+|+.||++|+++.|.+.|++++.
T Consensus        84 ------~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~  115 (116)
T 2vpk_A           84 ------LNLDSWNVKEIHQAADYLKVEEVVTKCKIKME  115 (116)
T ss_dssp             ------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             ------cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence                  12456789999999999999999999999874

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.18  E-value=8.1e-11  Score=80.32  Aligned_cols=90  Identities=18%  Similarity=0.206  Sum_probs=74.7

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW   84 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w   84 (158)
                      .++|+. +|+.|.+++.+ +..|++++.|+.... ...|.+++++..+++.+++|++...-                   
T Consensus        26 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~-~~~i~l~~~~~~~f~~ll~~iYtg~~-------------------   84 (119)
T 3b84_A           26 DATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGS-GGSVVLPAGFAEIFGLLLDFFYTGHL-------------------   84 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTT-CCCEEECGGGHHHHHHHHHHHHHSCC-------------------
T ss_pred             ceEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCC-CCeEEeCCCCHHHHHHHHHHHcCCCC-------------------
Confidence            466665 68999999998 567999999998653 67899999999999999999998431                   


Q ss_pred             HHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 031498           85 DADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD  121 (158)
Q Consensus        85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~  121 (158)
                           .++.+.+.+|+.||++|+++.|.+.|++++..
T Consensus        85 -----~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~  116 (119)
T 3b84_A           85 -----ALTSGNRDQVLLAARELRVPEAVELCQSFKPK  116 (119)
T ss_dssp             -----CCCTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred             -----ccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence                 24556789999999999999999999998753

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.17  E-value=3.5e-10  Score=81.27  Aligned_cols=103  Identities=14%  Similarity=0.192  Sum_probs=85.1

Q ss_pred             cEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchh
Q 031498            6 KITLKSSDGETFEVEETVA-LESQTIKHMVEDDC---ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDL   81 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (158)
                      .++|+. +|+.|.+++.++ ..|+++++|+....   ....|.+++++..+++.+++|++...-                
T Consensus        36 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~----------------   98 (172)
T 3htm_A           36 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA----------------   98 (172)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC----------------
T ss_pred             ceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC----------------
Confidence            467766 689999999984 67999999998642   346899999999999999999998531                


Q ss_pred             chHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHh
Q 031498           82 KTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRK  133 (158)
Q Consensus        82 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~  133 (158)
                              .++.+.+.+|+.+|++|+++.|.+.|.+++...+...++-++..
T Consensus        99 --------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~  142 (172)
T 3htm_A           99 --------PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI  142 (172)
T ss_dssp             --------TTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHH
T ss_pred             --------CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                    23456788999999999999999999999998888777666543

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.16  E-value=2.1e-10  Score=78.23  Aligned_cols=88  Identities=19%  Similarity=0.289  Sum_probs=74.6

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW   84 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w   84 (158)
                      .++|+. +|+.|.+++.+ +..|+++++|+...  ...|.+++++..+++.+++|++...-                   
T Consensus        29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~~-------------------   86 (119)
T 2q81_A           29 DCTFVV-DGVHFKAHKAVLAACSEYFKMLFVDQ--KDVVHLDISNAAGLGQVLEFMYTAKL-------------------   86 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHC--CSGGGGGGCCHHHHHHHHHHHHHSCC-------------------
T ss_pred             ceEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHHHcCCCC-------------------
Confidence            466765 68999999998 46799999999874  56788889999999999999998431                   


Q ss_pred             HHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHH
Q 031498           85 DADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA  120 (158)
Q Consensus        85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia  120 (158)
                           .++.+.+.+|+.||++|+++.|.+.|+++++
T Consensus        87 -----~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~  117 (119)
T 2q81_A           87 -----SLSPENVDDVLAVATFLQMQDIITACHALKS  117 (119)
T ss_dssp             -----CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             -----ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence                 2456678999999999999999999999874

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.15  E-value=9.3e-11  Score=81.06  Aligned_cols=90  Identities=16%  Similarity=0.376  Sum_probs=71.5

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecC-CCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhch
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLP-NVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKT   83 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~-~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (158)
                      .++|+. +|+.|.+++.+ +..|++++.|+... ....|.+| +++..+++.+++|++...                   
T Consensus        35 Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~-~~~~i~l~~~~~~~~f~~ll~~iYtg~-------------------   93 (129)
T 3ga1_A           35 DVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS-RSAVVELPAAVQPQSFQQILSFCYTGR-------------------   93 (129)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC-CCSEEECCTTCCHHHHHHHHHHHHHSE-------------------
T ss_pred             ceEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC-CCCEEEECCCCCHHHHHHHHHHHhCCc-------------------
Confidence            466765 79999999998 46799999999876 46789998 899999999999999853                   


Q ss_pred             HHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 031498           84 WDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD  121 (158)
Q Consensus        84 wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~  121 (158)
                           +.++.+.+.+|+.||++|+++.|.+.|++++..
T Consensus        94 -----~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~  126 (129)
T 3ga1_A           94 -----LSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK  126 (129)
T ss_dssp             -----EECCTTTHHHHHHHHHHTTBTTSSCC-------
T ss_pred             -----cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                 135667789999999999999999999998864

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.13  E-value=5.3e-10  Score=76.89  Aligned_cols=91  Identities=15%  Similarity=0.297  Sum_probs=76.1

Q ss_pred             cEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC--CCCceec-CCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchh
Q 031498            6 KITLKSSDGETFEVEETVA-LESQTIKHMVEDDC--ADTVIPL-PNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDL   81 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~--~~~~Ipl-~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (158)
                      .++|+. +|+.|.+++.++ ..|+++++|+....  ....|.| ++++..+++.+++|++...                 
T Consensus        31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~-----------------   92 (127)
T 1r29_A           31 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSR-----------------   92 (127)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSC-----------------
T ss_pred             CEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCC-----------------
Confidence            467765 589999999985 68999999998643  2567899 8999999999999999842                 


Q ss_pred             chHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 031498           82 KTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD  121 (158)
Q Consensus        82 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~  121 (158)
                             +.++.+.+.+|+.||++|+++.|.+.|..++..
T Consensus        93 -------~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~  125 (127)
T 1r29_A           93 -------LNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA  125 (127)
T ss_dssp             -------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -------cCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence                   124567899999999999999999999998853

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.10  E-value=2.1e-10  Score=80.28  Aligned_cols=100  Identities=13%  Similarity=0.199  Sum_probs=74.0

Q ss_pred             cEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchh
Q 031498            6 KITLKSSDGETFEVEETVA-LESQTIKHMVEDDC---ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDL   81 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (158)
                      .++|+. +|+.|.+++.++ ..|+++++|+....   ....|.+++++..+++.+++|++...-                
T Consensus        27 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~----------------   89 (145)
T 4eoz_A           27 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA----------------   89 (145)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC----------------
T ss_pred             ceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc----------------
Confidence            467765 689999999995 77999999998542   246799999999999999999998531                


Q ss_pred             chHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHH
Q 031498           82 KTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEE  130 (158)
Q Consensus        82 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~ee  130 (158)
                              .++.+.+.+|+.+|++++++.|.+.|+.++...+...++-+
T Consensus        90 --------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~  130 (145)
T 4eoz_A           90 --------PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAE  130 (145)
T ss_dssp             --------TTGGGTHHHHHHHHHHTTCHHHHHHHHCC------------
T ss_pred             --------CCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHH
Confidence                    13456788999999999999999999999987776555433

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.09  E-value=3.8e-10  Score=79.59  Aligned_cols=89  Identities=21%  Similarity=0.405  Sum_probs=74.3

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC-----CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDC-----ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTED   79 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~-----~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~   79 (158)
                      .|+|+. +|+.|.+++.+ +..|+++++|+....     ....|.|++++..+++.+++|++...               
T Consensus        49 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~---------------  112 (144)
T 2ppi_A           49 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ---------------  112 (144)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSC---------------
T ss_pred             ceEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCC---------------
Confidence            466665 68999999998 467999999998642     35679999999999999999998632               


Q ss_pred             hhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHH
Q 031498           80 DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV  119 (158)
Q Consensus        80 ~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~i  119 (158)
                               +.++.+.+.+|+.||++|+++.|.+.|++++
T Consensus       113 ---------~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L  143 (144)
T 2ppi_A          113 ---------IRLNEDTIQDVVQAADLLLLTDLKTLCCEFL  143 (144)
T ss_dssp             ---------CCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             ---------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence                     1245678999999999999999999999764

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.09  E-value=3.8e-10  Score=78.86  Aligned_cols=95  Identities=14%  Similarity=0.248  Sum_probs=78.2

Q ss_pred             cEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-CCCceecC-CCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhc
Q 031498            6 KITLKSSDGETFEVEETVA-LESQTIKHMVEDDC-ADTVIPLP-NVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLK   82 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~-~~~~Ipl~-~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~   82 (158)
                      .|+|+. +|+.|.+++.++ ..|++++.|+.... ....|.+| +++...++.+++|++...                  
T Consensus        38 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~------------------   98 (138)
T 2z8h_A           38 DVTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAK------------------   98 (138)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSC------------------
T ss_pred             CeEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCC------------------
Confidence            466665 589999999994 67999999998653 23568886 899999999999999842                  


Q ss_pred             hHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcC
Q 031498           83 TWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKG  125 (158)
Q Consensus        83 ~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~  125 (158)
                            +.++.+.+.+|+.||++|+++.|.+.|++++...+..
T Consensus        99 ------~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~  135 (138)
T 2z8h_A           99 ------LILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD  135 (138)
T ss_dssp             ------CCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred             ------cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence                  1245677999999999999999999999998766543

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.00  E-value=1.3e-10  Score=79.71  Aligned_cols=88  Identities=19%  Similarity=0.315  Sum_probs=73.1

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC-CCCceecCC-CCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhc
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDC-ADTVIPLPN-VTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLK   82 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~-~~~~Ipl~~-i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~   82 (158)
                      .++|+. +|+.|.+++.+ +..|+++++|+.... ....|.+++ ++..+++.+++|++...                  
T Consensus        34 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~------------------   94 (125)
T 3ohu_A           34 DVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAK------------------   94 (125)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSE------------------
T ss_pred             ceEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCc------------------
Confidence            467775 68999999999 567999999998653 356789998 99999999999998742                  


Q ss_pred             hHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHH
Q 031498           83 TWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQT  118 (158)
Q Consensus        83 ~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~  118 (158)
                            +.++.+.+.+|+.||++|+++.|.+.|+++
T Consensus        95 ------~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~  124 (125)
T 3ohu_A           95 ------LLLSRENIREVIRCAEFLRMHNLEDSCFSF  124 (125)
T ss_dssp             ------EEECTTTHHHHHHHHHHHTBSSCTTSSCCC
T ss_pred             ------eEECHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence                  135667789999999999999999988754

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=98.99  E-value=1.4e-09  Score=83.21  Aligned_cols=100  Identities=19%  Similarity=0.324  Sum_probs=76.5

Q ss_pred             cEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-----CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 031498            6 KITLKSSDGETFEVEETVA-LESQTIKHMVEDDC-----ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTED   79 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~-----~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~   79 (158)
                      .++|+. +|+.|.+++.++ ..|++++.|+....     ....|++++++..+++.+++|++...-              
T Consensus        33 Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~--------------   97 (256)
T 3hve_A           33 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI--------------   97 (256)
T ss_dssp             CEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCC--------------
T ss_pred             ceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCC--------------
Confidence            466665 689999999995 56999999997532     345799999999999999999998431              


Q ss_pred             hhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHH
Q 031498           80 DLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEE  130 (158)
Q Consensus        80 ~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~ee  130 (158)
                                .++.+.+.+|+.||++|+++.|.+.|+.++...+.-.+.-.
T Consensus        98 ----------~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~  138 (256)
T 3hve_A           98 ----------RLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIG  138 (256)
T ss_dssp             ----------CCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHH
T ss_pred             ----------cccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHH
Confidence                      24556788999999999999999999998887766555333

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=98.98  E-value=1e-09  Score=84.97  Aligned_cols=102  Identities=14%  Similarity=0.193  Sum_probs=79.7

Q ss_pred             cEEEEcC--CCCeEEecHHHH-HHhHHHHHHHHhCC---CCCceecC------CCCHHHHHHHHHHHHHhcccCCCCCCC
Q 031498            6 KITLKSS--DGETFEVEETVA-LESQTIKHMVEDDC---ADTVIPLP------NVTSTILSKVIEYCKKHVEAGSGDKKD   73 (158)
Q Consensus         6 ~i~l~s~--DG~~f~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~------~i~~~~L~~Ii~~~~~~~~~~~~~~~~   73 (158)
                      .|+|+..  ||+.|.+++.++ ..|++++.|+.+..   ....|.++      +++..+++.+++|++...-        
T Consensus        34 Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~--------  105 (279)
T 3i3n_A           34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRI--------  105 (279)
T ss_dssp             CEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEE--------
T ss_pred             CeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCc--------
Confidence            4777766  799999999995 57999999997542   34578887      8999999999999998531        


Q ss_pred             CCCCcchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHH
Q 031498           74 DKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEI  131 (158)
Q Consensus        74 ~~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eei  131 (158)
                                      .++.+.+.+|+.||++|+++.|.+.|+.++...+...+.-.+
T Consensus       106 ----------------~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i  147 (279)
T 3i3n_A          106 ----------------RVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAI  147 (279)
T ss_dssp             ----------------EEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHH
T ss_pred             ----------------ccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHH
Confidence                            245567899999999999999999999999888877665554

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=98.90  E-value=9e-10  Score=75.35  Aligned_cols=85  Identities=15%  Similarity=0.188  Sum_probs=70.3

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW   84 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w   84 (158)
                      .++|+. +|+.|.+++.+ +..|++++.      ....|.+++++..+++.+++|++...                    
T Consensus        32 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~------~~~~i~l~~v~~~~f~~ll~fiYtg~--------------------   84 (119)
T 3m5b_A           32 DTLITV-GSQEFPAHSLVLAGVSQQLGR------RGQWALGEGISPSTFAQLLNFVYGES--------------------   84 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHTTCGGGCC------CEEEECCSSCCHHHHHHHHHHHTTCC--------------------
T ss_pred             ceEEEE-CCEEEeeEHHHHHHcCHHHhc------CCCEEEeCCCCHHHHHHHHHHHcCCC--------------------
Confidence            466665 79999999998 456999874      24578899999999999999998742                    


Q ss_pred             HHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 031498           85 DADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD  121 (158)
Q Consensus        85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~  121 (158)
                          +.++.+.+.+|+.||++|+|+.|.+.|++++.+
T Consensus        85 ----~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           85 ----VELQPGELRPLQEAARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             ----EEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             ----cCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence                235778899999999999999999999998754

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=98.89  E-value=1.1e-08  Score=80.34  Aligned_cols=103  Identities=15%  Similarity=0.203  Sum_probs=83.4

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC---CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchh
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDC---ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDL   81 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (158)
                      .++|+. +|+.|.+++.+ +.+|+++++|+....   ....|.|++++..+++.+++|++...-                
T Consensus       176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~----------------  238 (312)
T 3hqi_A          176 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA----------------  238 (312)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCC----------------
T ss_pred             ceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCC----------------
Confidence            466666 78999999998 578999999997532   356899999999999999999998421                


Q ss_pred             chHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHh
Q 031498           82 KTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRK  133 (158)
Q Consensus        82 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~  133 (158)
                              .++.+.+.+|+.||++++++.|...|..++...+...++-++..
T Consensus       239 --------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~  282 (312)
T 3hqi_A          239 --------PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI  282 (312)
T ss_dssp             --------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHH
T ss_pred             --------CChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence                    12347889999999999999999999999988777777655533

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=98.89  E-value=1.1e-09  Score=75.20  Aligned_cols=89  Identities=16%  Similarity=0.274  Sum_probs=72.6

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC-CCCceecC-CCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhc
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDC-ADTVIPLP-NVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLK   82 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~-~~~~Ipl~-~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~   82 (158)
                      .++|+. +|+.|.+++.+ +..|+++++|+.+.. ....|.+| +++...++.+++|++...-                 
T Consensus        31 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~-----------------   92 (124)
T 2ihc_A           31 DVTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKL-----------------   92 (124)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEE-----------------
T ss_pred             CEEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCc-----------------
Confidence            466665 58999999998 568999999998653 23568886 8999999999999998531                 


Q ss_pred             hHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHH
Q 031498           83 TWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV  119 (158)
Q Consensus        83 ~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~i  119 (158)
                             .++.+.+.+|+.||++|+++.|.+.|++++
T Consensus        93 -------~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l  122 (124)
T 2ihc_A           93 -------ILSKENVDEVCKCVEFLSVHNIEESCFQFL  122 (124)
T ss_dssp             -------EEETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred             -------ccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence                   245667999999999999999999998765

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=98.83  E-value=9.6e-09  Score=69.71  Aligned_cols=82  Identities=16%  Similarity=0.291  Sum_probs=68.6

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW   84 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w   84 (158)
                      .++|+. +|+.|.+++.+ +..|+++++++...  ...|.+++++..+++.+++|++...-   +               
T Consensus        33 Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~--~~~i~l~~~~~~~f~~~l~~~Ytg~~---~---------------   91 (116)
T 3fkc_A           33 DVTVIV-EDRKFRAHKNILSASSTYFHQLFSVA--GQVVELSFIRAEIFAEILNYIYSSKI---V---------------   91 (116)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHTTSCC---C---------------
T ss_pred             eEEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHhhcCCCc---C---------------
Confidence            466665 68999999998 57899999999764  56899999999999999999987421   0               


Q ss_pred             HHhhccCChHHHHHHHHhhhccCchhHHH
Q 031498           85 DADFVKVDQNTLFDLILAANYLNIKGLLD  113 (158)
Q Consensus        85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~  113 (158)
                           .++.+.+.+|+.||++|+|+.|.+
T Consensus        92 -----~~~~~~~~~ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A           92 -----RVRSDLLDELIKSGQLLGVKFIAA  115 (116)
T ss_dssp             -----SCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred             -----CCCHHHHHHHHHHHHHhCccccCc
Confidence                 257788999999999999999875

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=95.83  E-value=0.072  Score=35.01  Aligned_cols=94  Identities=14%  Similarity=0.200  Sum_probs=65.4

Q ss_pred             CCCcEEEEcCCCCeEEecHHHHHHh--HHHHHHHHhC-------CCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCC
Q 031498            3 SEKKITLKSSDGETFEVEETVALES--QTIKHMVEDD-------CADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKD   73 (158)
Q Consensus         3 ~~~~i~l~s~DG~~f~v~~~~a~~S--~~l~~~l~~~-------~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~   73 (158)
                      +++.|+|-- .|+.|.+++..+..-  ..|..|+...       ...+.+-+ +-++..++.|+.|++..+-.-+.    
T Consensus         4 ~~~~v~LNV-GG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~----   77 (107)
T 3drz_A            4 VSKWVRLNV-GGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINK----   77 (107)
T ss_dssp             -CCEEEEEE-TTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCT----
T ss_pred             CCCEEEEEE-CCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCC----
Confidence            345566654 499999999987652  4677777532       12345555 78999999999999985321110    


Q ss_pred             CCCCcchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHH
Q 031498           74 DKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVAD  121 (158)
Q Consensus        74 ~~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~  121 (158)
                                      ++.   ...++..|.|.+|++|++.|-..|..
T Consensus        78 ----------------~~~---~~~l~~Ea~fy~l~~L~~~l~~~i~~  106 (107)
T 3drz_A           78 ----------------DLA---EEGVLEEAEFYNITSLIKLVKDKIRE  106 (107)
T ss_dssp             ----------------TSC---HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ----------------CCC---HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence                            122   24678999999999999999887753

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=88.28  E-value=0.61  Score=34.25  Aligned_cols=94  Identities=14%  Similarity=0.226  Sum_probs=63.9

Q ss_pred             CCcEEEEcCCCCeEEecHHHHHHh--HHHHHHHHhCC-------CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCC
Q 031498            4 EKKITLKSSDGETFEVEETVALES--QTIKHMVEDDC-------ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDD   74 (158)
Q Consensus         4 ~~~i~l~s~DG~~f~v~~~~a~~S--~~l~~~l~~~~-------~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~   74 (158)
                      ++.|+|-- .|+.|.+.+..+..-  .+|..|+....       ..+.+-+ +-++..++.|+.|++..+-. .+     
T Consensus        11 ~~~V~LNV-GG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~-lP-----   82 (202)
T 3drx_A           11 SKWVRLNV-GGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLV-IN-----   82 (202)
T ss_dssp             CCEEEEEE-TTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCC-CC-----
T ss_pred             CCEEEEEE-CCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccC-CC-----
Confidence            34555543 599999998876542  35666765321       2344555 67899999999999985321 11     


Q ss_pred             CCCcchhchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q 031498           75 KSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADM  122 (158)
Q Consensus        75 ~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~  122 (158)
                              +      ++..   ..++..|.|.+|.+|++.|-..+..+
T Consensus        83 --------~------~~~~---~~l~eEA~FygL~~Lv~~l~~~i~er  113 (202)
T 3drx_A           83 --------K------DLAE---EGVLEEAEFYNITSLIKLVKDKIRER  113 (202)
T ss_dssp             --------T------TSCH---HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --------C------CCCH---HHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence                    0      1222   35889999999999999999888644

>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...

Probab=85.56  E-value=2.7  Score=32.29  Aligned_cols=102  Identities=14%  Similarity=0.172  Sum_probs=69.1

Q ss_pred             eecCCCCHHHHHHHHHHHHHhcccCC-CCCCCCCCCcchhchHHHh--hccCChH--HHHHHHHhhhccCchhHHHHHHH
Q 031498           43 IPLPNVTSTILSKVIEYCKKHVEAGS-GDKKDDKSTEDDLKTWDAD--FVKVDQN--TLFDLILAANYLNIKGLLDLTCQ  117 (158)
Q Consensus        43 Ipl~~i~~~~L~~Ii~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~--Fl~~~~~--~l~~Ll~AA~~L~i~~L~~~~~~  117 (158)
                      ..++.-+--.-.-|+.|++-+--... .--.......+.+.+|-..  |-.+..+  ..+..|.|..=-.+.+|+...-+
T Consensus       191 ~Q~~~~d~~~T~NVvAwLYAAilng~~Wfl~~~~~sv~dfN~WA~~ngft~~~~~~~~~~~~Laa~TGVsVe~lL~aI~~  270 (306)
T 3tnt_A          191 AQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKE  270 (306)
T ss_dssp             CCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHHHTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHHHH
T ss_pred             hhccCccceeehhHHHHHHHHHhcCCeEEeeccEecHHHHHHHHHhcCCccccccHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            34444444455678999998754322 1111123456667888444  5446654  35999999999999999998888


Q ss_pred             HHHHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 031498          118 TVADMIKGKTPEEIRKTFNIKNDFSPDEEE  147 (158)
Q Consensus       118 ~ia~~i~~ks~eeir~~f~i~~d~t~eee~  147 (158)
                      .+.+=+.|++   |--...++++|||+|.-
T Consensus       271 ll~~g~~G~~---IlG~~~leDE~Tp~~V~  297 (306)
T 3tnt_A          271 LLQNGMNGRT---ILGSTILEDEFTPFDVV  297 (306)
T ss_dssp             HHHHCCTTCC---BTTBSSCCCSCCHHHHH
T ss_pred             HHhcCcCCce---eeccccccccCCHHHHH
Confidence            7777677887   66667788889998753

>3tlo_A 3CL-Pro, 3CLP, 3C-like proteinase; hydrolysis, hydrolase, protein binding; 1.60A {Human coronavirus} PDB: 2zu2_A 1p9s_A

Probab=81.65  E-value=1.7  Score=33.36  Aligned_cols=101  Identities=13%  Similarity=0.229  Sum_probs=67.0

Q ss_pred             eecCCCCHHHHHHHHHHHHHhcccCCC-CCCCCCCCcchhchHHHh--hccCChHHHHHHHHhhhccCchhHHHHHHHHH
Q 031498           43 IPLPNVTSTILSKVIEYCKKHVEAGSG-DKKDDKSTEDDLKTWDAD--FVKVDQNTLFDLILAANYLNIKGLLDLTCQTV  119 (158)
Q Consensus        43 Ipl~~i~~~~L~~Ii~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~--Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~i  119 (158)
                      ..++.-+--.-.-|+.|++-+--+..+ =-.......+.+.+|-..  |-.+.....+++|.|..=.++.+|+...-+ +
T Consensus       191 ~Q~~~~d~~~T~NVvAwLYAAilng~~wfl~~~~~sv~dfN~WA~~ngft~~~~~~~~~~Laa~TGVsV~~lL~aI~~-L  269 (303)
T 3tlo_A          191 LQVESANLMLSDNVVAFLYAALLNGCRWWLCSTRVNVDGFNEWAMANGYTSVSSVECYSILAAKTGVSVEQLLASIQH-L  269 (303)
T ss_dssp             CCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCCCCCCHHHHHHHHHHHTBCCCCCSGGGHHHHHHHTCCHHHHHHHHHH-H
T ss_pred             hcccCccceeehhHHHHHHHHHHcCCCeeeccceecHHHHHHHHHhcCccccccchHHHHHHHHhCCcHHHHHHHHHH-H
Confidence            344444444556789999988654321 111223456677888443  555777788999999999999999887664 5


Q ss_pred             HHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 031498          120 ADMIKGKTPEEIRKTFNIKNDFSPDEEE  147 (158)
Q Consensus       120 a~~i~~ks~eeir~~f~i~~d~t~eee~  147 (158)
                      +.-+.|++   |--...++++|||+|.-
T Consensus       270 ~~g~~G~~---IlG~~~leDE~Tp~~V~  294 (303)
T 3tlo_A          270 HEGFGGKN---ILGYSSLCDEFTLAEVV  294 (303)
T ss_dssp             TTCCTTCC---BTTBSSCCCCCCHHHHH
T ss_pred             hcCCCCce---ecccccccccCCHHHHH
Confidence            55555555   55566688889998754

>3d23_B 3C-like proteinase; main protease, ATP-binding, endonuclease, exonuclease, helic hydrolase, membrane, metal-binding, nuclease; HET: 3IH; 2.50A {Human coronavirus}

Probab=80.95  E-value=2.9  Score=32.01  Aligned_cols=101  Identities=16%  Similarity=0.276  Sum_probs=67.2

Q ss_pred             eecCCCCHHHHHHHHHHHHHhcccCC-CCCCCCCCCcchhchHHHh--hccCChHHHHHHHHhhhccCchhHHHHHHHHH
Q 031498           43 IPLPNVTSTILSKVIEYCKKHVEAGS-GDKKDDKSTEDDLKTWDAD--FVKVDQNTLFDLILAANYLNIKGLLDLTCQTV  119 (158)
Q Consensus        43 Ipl~~i~~~~L~~Ii~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~--Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~i  119 (158)
                      ..++..+.-.-..|+.|++-+--... .-........+.+.+|-..  |-++.....++.|.|..=..+.+|+...-+. 
T Consensus       193 ~Q~~~~d~~~T~NVvA~LYAAilng~~Wf~~~~~~s~~~fN~WA~~ngft~~~~~~~~~~Laa~TgVsVe~lLaaI~~L-  271 (302)
T 3d23_B          193 VQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFSQVKADLVLDALASMTGVSIETLLAAIKRL-  271 (302)
T ss_dssp             CCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHHHHTBCCCCCCHHHHHHHHHHSCCHHHHHHHHHHH-
T ss_pred             hhccCccceeehhHHHHHHHHHHcCCceeeccceecHHHHHHHHHhCCcccccchhHHHHHHHHhCCcHHHHHHHHHHH-
Confidence            44544455556779999998854432 1111223456677888444  5557777889999999999999998765444 


Q ss_pred             HHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 031498          120 ADMIKGKTPEEIRKTFNIKNDFSPDEEE  147 (158)
Q Consensus       120 a~~i~~ks~eeir~~f~i~~d~t~eee~  147 (158)
                      +.-+.||+   |--...++++|||++--
T Consensus       272 ~~gf~G~~---IlG~~~leDE~Tp~~V~  296 (302)
T 3d23_B          272 YMGFQGRQ---ILGSCTFEDELAPSDVY  296 (302)
T ss_dssp             HTCCTTCC---BTTBSSCCCSSCHHHHH
T ss_pred             hcCCCCce---eeccccccccCCHHHHH
Confidence            55455555   45556688889999754

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=80.02  E-value=0.86  Score=30.26  Aligned_cols=92  Identities=10%  Similarity=0.108  Sum_probs=57.7

Q ss_pred             CCCCCcEEEEcCCCCeEEecHHHHHHh--HHHHHHHHhCC----CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCC
Q 031498            1 MSSEKKITLKSSDGETFEVEETVALES--QTIKHMVEDDC----ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDD   74 (158)
Q Consensus         1 m~~~~~i~l~s~DG~~f~v~~~~a~~S--~~l~~~l~~~~----~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~   74 (158)
                      |++++.|+|--. |+.|..++..+..-  ..|..|+....    ..+.+-+ +-++..++.|+.|++..+-.-+.     
T Consensus         1 m~~~~~V~LNVG-G~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~-----   73 (115)
T 3kvt_A            1 MDAENRVIINVG-GIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPT-----   73 (115)
T ss_dssp             ---CCEEEEEET-TEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCS-----
T ss_pred             CCCCCEEEEEEC-CEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCC-----
Confidence            887888887654 99999999887542  23444443221    2445555 67899999999999985321111     


Q ss_pred             CCCcchhchHHHhhccCChHHHHHHHHhhhccCchhHH-HHHHH
Q 031498           75 KSTEDDLKTWDADFVKVDQNTLFDLILAANYLNIKGLL-DLTCQ  117 (158)
Q Consensus        75 ~~~~~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~-~~~~~  117 (158)
                                     ++.   ...++..|.|.+|.++. +-||.
T Consensus        74 ---------------~~~---~~~~~~Ea~fy~i~~~~l~~CC~   99 (115)
T 3kvt_A           74 ---------------DVC---GPLFEEELEFWGLDSNQVEPCCW   99 (115)
T ss_dssp             ---------------SSC---HHHHHHHHHHHTCCGGGBCGGGS
T ss_pred             ---------------ccc---HHHHHHHHHHhCCChHHHHHHHH
Confidence                           122   34678889999998764 33554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d1nexa1	70	a.157.1.1 (A:116-185) Centromere DNA-binding prote	4e-39
d1fs1b1	55	a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45,	7e-33
d1hv2a_	99	d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy	1e-30
d2c9wc1	96	d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens	2e-29
d1fs1b2	61	d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk	9e-24
d1nexa2	72	d.42.1.1 (A:4-103) Centromere DNA-binding protein	2e-22

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  125 bits (315), Expect = 4e-39
 Identities = 43/70 (61%), Positives = 59/70 (84%)

Query: 81  LKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKND 140
           + +WD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI ND
Sbjct: 1   VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVND 60

Query: 141 FSPDEEEEVR 150
           F+P+EE  +R
Sbjct: 61  FTPEEEAAIR 70

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (273), Expect = 7e-33
 Identities = 44/53 (83%), Positives = 51/53 (96%)

Query: 84  WDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFN 136
           WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFN
Sbjct: 3   WDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 55

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (261), Expect = 1e-30
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 12/108 (11%)

Query: 3   SEKKITLKSSDGETFEVEETVALESQTIKHMVEDDC--ADTVIPLPNVTSTILSKVIEYC 60
           S+  +TL S D + +E+  + A+ S T+K M+E     +   I L    S IL K +EY 
Sbjct: 2   SQDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYL 61

Query: 61  KKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLNI 108
             +++            +D++  ++     +      +L+LAA+YL+I
Sbjct: 62  NYNLKY-----SGVSEDDDEIPEFE-----IPTEMSLELLLAADYLSI 99

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 2e-29
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 18/106 (16%)

Query: 7   ITLKSSDGETFEVEETVALESQTIKHMVEDDCADT-----VIPLPNVTSTILSKVIEYCK 61
           + L SSDG  F V+   AL S TIK M+             +    + S +LSKV  Y  
Sbjct: 3   VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62

Query: 62  KHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTLFDLILAANYLN 107
             V           ++  ++  +      +      +L++AAN+L+
Sbjct: 63  YKV--------RYTNSSTEIPEFP-----IAPEIALELLMAANFLD 95

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.9 bits (213), Expect = 9e-24
 Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 6  KITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVE 65
           I L+SSDGE FEV+  +A +S TIK M+ED   D  +PLPNV + IL KVI++C  H +
Sbjct: 2  SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-VPLPNVNAAILKKVIQWCTHHKD 60

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.6 bits (204), Expect = 2e-22
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 7/67 (10%)

Query: 6  KITLKSSDGETFEVEETVALESQTIKHMVED-------DCADTVIPLPNVTSTILSKVIE 58
           + L S +GE F V++ +A  S  +K+ + D       D  + V+P+PNV S++L KVIE
Sbjct: 2  NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIE 61

Query: 59 YCKKHVE 65
          + + H +
Sbjct: 62 WAEHHRD 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	99.96
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	99.95
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.91
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	99.87
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.86
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.28
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.15
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	89.61
d2duca1	300	Coronavirus main proteinase (3Cl-pro, putative cor	88.65
d1lvoa_	299	Coronavirus main proteinase (3Cl-pro, putative cor	82.33
d1p9sa_	300	Coronavirus main proteinase (3Cl-pro, putative cor	80.46

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.5e-31  Score=163.67  Aligned_cols=70  Identities=61%  Similarity=1.132  Sum_probs=67.4

Q ss_pred             hchHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHH
Q 031498           81 LKTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVR  150 (158)
Q Consensus        81 ~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~eee~~i~  150 (158)
                      +++||.+|++++.+.|++|+.|||||+|++|+++||++||.+|+||||+|||++|||++|+||||++++|
T Consensus         1 i~~wD~~F~~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I~~D~t~eEe~~ir   70 (70)
T d1nexa1           1 VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR   70 (70)
T ss_dssp             CCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHhcC
Confidence            4689999999999999999999999999999999999999999999999999999999999999998764

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.2e-29  Score=168.70  Aligned_cols=97  Identities=30%  Similarity=0.505  Sum_probs=83.1

Q ss_pred             CCCCCcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC--CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCc
Q 031498            1 MSSEKKITLKSSDGETFEVEETVALESQTIKHMVEDDC--ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTE   78 (158)
Q Consensus         1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~--~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~   78 (158)
                      || +++|+|+|+||+.|.|++++|++|++|++|+++.+  ...+||+|+|+|.+|++|++||+||+.++....     ..
T Consensus         1 m~-~~~v~L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~~e~~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~-----~~   74 (99)
T d1hv2a_           1 MS-QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSE-----DD   74 (99)
T ss_dssp             CC-CSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCS-----SC
T ss_pred             CC-CCeEEEEcCCCCEEEeeHHHHHHhHHHHHHHHccCCCCcCccccCCCChHHHHHHHHHHHHhhhCcCccc-----cc
Confidence            67 67999999999999999999999999999999765  466899999999999999999999988754221     12


Q ss_pred             chhchHHHhhccCChHHHHHHHHhhhccCc
Q 031498           79 DDLKTWDADFVKVDQNTLFDLILAANYLNI  108 (158)
Q Consensus        79 ~~~~~wd~~Fl~~~~~~l~~Ll~AA~~L~i  108 (158)
                      ..+++|     +++++.||+|+.|||||+|
T Consensus        75 ~~~~ef-----dvd~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          75 DEIPEF-----EIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             SSCCCC-----CCCHHHHHHHHHHHHHHCC
T ss_pred             ccCCCC-----CCCHHHHHHHHHHHhhhCC
Confidence            234555     5899999999999999997

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-27  Score=157.35  Aligned_cols=89  Identities=29%  Similarity=0.444  Sum_probs=72.2

Q ss_pred             cEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-----CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcch
Q 031498            6 KITLKSSDGETFEVEETVALESQTIKHMVEDDC-----ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDD   80 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~-----~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~   80 (158)
                      +|+|+|+||..|.|++++|++|++|++|+++.+     ...+||||+|+|.+|++|++||+||..++..        ...
T Consensus         2 ~i~L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~--------~~~   73 (96)
T d2c9wc1           2 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNS--------STE   73 (96)
T ss_dssp             EEEEECTTCCEEEEEHHHHTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC------------C
T ss_pred             EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCC--------cCC
Confidence            699999999999999999999999999998653     3568999999999999999999999877653        233


Q ss_pred             hchHHHhhccCChHHHHHHHHhhhccC
Q 031498           81 LKTWDADFVKVDQNTLFDLILAANYLN  107 (158)
Q Consensus        81 ~~~wd~~Fl~~~~~~l~~Ll~AA~~L~  107 (158)
                      +++|     +++++.+|+|+.|||||+
T Consensus        74 ~~~f-----di~~~~l~eLi~AAnyLd   95 (96)
T d2c9wc1          74 IPEF-----PIAPEIALELLMAANFLD   95 (96)
T ss_dssp             CCCC-----CCCHHHHHHHHHHHHHHT
T ss_pred             CCCC-----cCCHHHHHHHHHHHhhhc
Confidence            4555     589999999999999997

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4e-25  Score=130.50  Aligned_cols=55  Identities=80%  Similarity=1.288  Sum_probs=53.9

Q ss_pred             chHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHHHHhcCCCHHHHHhHcC
Q 031498           82 KTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFN  136 (158)
Q Consensus        82 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia~~i~~ks~eeir~~f~  136 (158)
                      |+||.+|++++.+.|++|+.|||||+|++|+++||++||++|+||||+|||++|+
T Consensus         1 p~wD~~F~~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikgKt~eeiR~~fn   55 (55)
T d1fs1b1           1 PVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN   55 (55)
T ss_dssp             CHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred             ChHhHHHHHcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence            6899999999999999999999999999999999999999999999999999996

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=8.4e-23  Score=127.62  Aligned_cols=64  Identities=34%  Similarity=0.598  Sum_probs=55.2

Q ss_pred             cEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-------CCCceecCCCCHHHHHHHHHHHHHhcccCCC
Q 031498            6 KITLKSSDGETFEVEETVALESQTIKHMVEDDC-------ADTVIPLPNVTSTILSKVIEYCKKHVEAGSG   69 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~-------~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~   69 (158)
                      +|+|+|+||++|.|++++|++|++|++|+++.+       ...+||||+|+|.+|++|++||+||+++|+|
T Consensus         2 ~I~L~SsDg~~F~v~~~~a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~H~~dp~P   72 (72)
T d1nexa2           2 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFP   72 (72)
T ss_dssp             EEEEECTTSCEEEEEHHHHTTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHHHTTTCCCC
T ss_pred             eeEEEeCCCCEEEecHHHHHHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHHccCCCCC
Confidence            699999999999999999999999999998764       1357999999999999999999999988764

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.5e-22  Score=121.35  Aligned_cols=61  Identities=49%  Similarity=0.745  Sum_probs=56.7

Q ss_pred             CcEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhccc
Q 031498            5 KKITLKSSDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEA   66 (158)
Q Consensus         5 ~~i~l~s~DG~~f~v~~~~a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~   66 (158)
                      +.|+|+|+||++|.|++++|++|++|++|+++.+ .++||||+|+|.+|++|++||+||+++
T Consensus         1 p~I~L~SsDg~~f~v~~~~a~~S~tI~~ml~~~~-~~~Ipl~~V~s~iL~kVieyc~~H~~d   61 (61)
T d1fs1b2           1 PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDD   61 (61)
T ss_dssp             CEEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEecCCCEEEecHHHHHHhHHHHHHHhcCC-CCCcccCCcCHHHHHHHHHHHHHccCC
Confidence            3699999999999999999999999999999876 568999999999999999999999753

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.5e-11  Score=83.04  Aligned_cols=88  Identities=19%  Similarity=0.318  Sum_probs=75.4

Q ss_pred             cEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchH
Q 031498            6 KITLKSSDGETFEVEETV-ALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTW   84 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~w   84 (158)
                      .++|+. +|+.|.+++.+ +..|+++++++...  ...+.++++++.+++.+++|++..+                    
T Consensus        30 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~lf~~~--~~~i~~~~v~~~~f~~ll~~~Ytg~--------------------   86 (121)
T d1buoa_          30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN--SQHYTLDFLSPKTFQQILEYAYTAT--------------------   86 (121)
T ss_dssp             CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHHHSC--------------------
T ss_pred             eEEEEE-CCEEEEEEHHHhcccChhhhhhccCc--cceeecCCCCHHHHHHHHHheEccc--------------------
Confidence            467775 78899999998 57899999999754  5678999999999999999999742                    


Q ss_pred             HHhhccCChHHHHHHHHhhhccCchhHHHHHHHHHH
Q 031498           85 DADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA  120 (158)
Q Consensus        85 d~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia  120 (158)
                          +.++.+.+.+|+.||++|+++.|.+.|++++-
T Consensus        87 ----i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~  118 (121)
T d1buoa_          87 ----LQAKAEDLDDLLYAAEILEIEYLEEQCLKMLE  118 (121)
T ss_dssp             ----CCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ----cCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                23577889999999999999999999999883

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.6e-10  Score=77.71  Aligned_cols=89  Identities=12%  Similarity=0.253  Sum_probs=72.3

Q ss_pred             cEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchh
Q 031498            6 KITLKSSDGETFEVEETVA-LESQTIKHMVEDDC---ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDL   81 (158)
Q Consensus         6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~   81 (158)
                      .++|+. +|+.|.+++.++ ..|+++++|+.+..   ....+-++++++..++.+++|++...                 
T Consensus        27 Dv~l~v-~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~-----------------   88 (122)
T d1r29a_          27 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSR-----------------   88 (122)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSC-----------------
T ss_pred             EEEEEE-CCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCe-----------------
Confidence            467774 788999999995 68999999997543   12234457899999999999999742                 


Q ss_pred             chHHHhhccCChHHHHHHHHhhhccCchhHHHHHHHHH
Q 031498           82 KTWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTV  119 (158)
Q Consensus        82 ~~wd~~Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~i  119 (158)
                             +.++.+.+.+|+.||++|+|+.|.+.|.+++
T Consensus        89 -------~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L  119 (122)
T d1r29a_          89 -------LNLREGNIMAVMATAMYLQMEHVVDTCRKFI  119 (122)
T ss_dssp             -------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -------ecCchhhHHHHHHHHHHHCcHHHHHHHHHHH
Confidence                   1356677999999999999999999999987

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=89.61  E-value=0.017  Score=36.37  Aligned_cols=82  Identities=9%  Similarity=0.085  Sum_probs=55.2

Q ss_pred             CCCCeEEecHHHHHH--hHHHHHHHHhCC----CCCceecCCCCHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhchHH
Q 031498           12 SDGETFEVEETVALE--SQTIKHMVEDDC----ADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWD   85 (158)
Q Consensus        12 ~DG~~f~v~~~~a~~--S~~l~~~l~~~~----~~~~Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~~~~~~~~~~~~~~wd   85 (158)
                      -.|+.|.+.+..+..  ..++..++....    ..+.+-+ +=++..++.|+.|++...-..++                
T Consensus         8 VGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylR~g~l~~p~----------------   70 (103)
T d3kvta_           8 VGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPT----------------   70 (103)
T ss_dssp             ETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCS----------------
T ss_pred             ECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEe-cCCHHHHHHHHHHHccCCccccc----------------
Confidence            468999999998765  235555544332    2445555 78899999999999975422221                


Q ss_pred             HhhccCChHHHHHHHHhhhccCch-hHHHHHHH
Q 031498           86 ADFVKVDQNTLFDLILAANYLNIK-GLLDLTCQ  117 (158)
Q Consensus        86 ~~Fl~~~~~~l~~Ll~AA~~L~i~-~L~~~~~~  117 (158)
                          ++   .+..|+.-|.|.+|+ .+++.||.
T Consensus        71 ----~~---~~~~l~~Ea~yygi~~~~l~~Cc~   96 (103)
T d3kvta_          71 ----DV---CGPLFEEELEFWGLDSNQVEPCCW   96 (103)
T ss_dssp             ----SS---CHHHHHHHHHHHTCCGGGBCGGGS
T ss_pred             ----cc---CHHHHHHHHHHcCCCHHHHHHHhH
Confidence                11   245678889999997 46888875

>d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {SARS coronavirus [TaxId: 227859]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)
species: SARS coronavirus [TaxId: 227859]

Probab=88.65  E-value=0.54  Score=34.24  Aligned_cols=101  Identities=14%  Similarity=0.178  Sum_probs=69.0

Q ss_pred             eecCCCCHHHHHHHHHHHHHhcccCC-CCCCCCCCCcchhchHHHh--hccCChHH--HHHHHHhhhccCchhHHHHHHH
Q 031498           43 IPLPNVTSTILSKVIEYCKKHVEAGS-GDKKDDKSTEDDLKTWDAD--FVKVDQNT--LFDLILAANYLNIKGLLDLTCQ  117 (158)
Q Consensus        43 Ipl~~i~~~~L~~Ii~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~--Fl~~~~~~--l~~Ll~AA~~L~i~~L~~~~~~  117 (158)
                      ..++.-+.-.-.-|+.|++-+--... .--.......+.+.+|-..  |-.+..+.  .+..|.|..=-.+.+|+...-+
T Consensus       190 ~Q~~~~d~~~T~NVvAwLYAAiln~~~Wfl~~~~~sv~dfN~WA~~ngft~~~~~~~~~~~~Laa~TGVsVe~lL~aI~~  269 (300)
T d2duca1         190 AQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKE  269 (300)
T ss_dssp             SCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHHHTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHHHH
T ss_pred             hcccCccceeehhHHHHHHHHHhcCceeEecccEecHHHhhHHHHhcCCcccccchHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            34444444455678999988754322 1011223456677888554  54466654  5999999999999999988887


Q ss_pred             HHHHHhcCCCHHHHHhHcCCCCCCCHHHH
Q 031498          118 TVADMIKGKTPEEIRKTFNIKNDFSPDEE  146 (158)
Q Consensus       118 ~ia~~i~~ks~eeir~~f~i~~d~t~eee  146 (158)
                      .+++-..|++   |--...++++|||++-
T Consensus       270 ll~~gf~g~~---IlG~~~leDE~Tp~~V  295 (300)
T d2duca1         270 LLQNGMNGRT---ILGSTILEDEFTPFDV  295 (300)
T ss_dssp             HHHHCCTTCC---BTTBSSCCCSCCHHHH
T ss_pred             HHhcCcCCce---eeccccccccCCHHHH
Confidence            7777677777   6667778889999974

>d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Transmissible gastroenteritis virus [TaxId: 11149]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)
species: Transmissible gastroenteritis virus [TaxId: 11149]

Probab=82.33  E-value=0.59  Score=33.99  Aligned_cols=99  Identities=17%  Similarity=0.282  Sum_probs=65.9

Q ss_pred             ecCCCCHHHHHHHHHHHHHhcccCC-CCCCCCCCCcchhchHHHh--hccCChHHHHHHHHhhhccCchhHHHHHHHHHH
Q 031498           44 PLPNVTSTILSKVIEYCKKHVEAGS-GDKKDDKSTEDDLKTWDAD--FVKVDQNTLFDLILAANYLNIKGLLDLTCQTVA  120 (158)
Q Consensus        44 pl~~i~~~~L~~Ii~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~--Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~ia  120 (158)
                      .++.-+.-+-.-|+.|++-+--... .-........+.+.+|-..  |-.+.....+..|.|..=-++.+|+...- .++
T Consensus       191 Q~~~~d~~~T~NVvAwLYAAiln~~~Wfl~~~~~sv~dfN~WA~~Ngft~~~~~~~~~~Laa~TGVsV~rlL~aI~-~L~  269 (299)
T d1lvoa_         191 QLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSSTDAFSMLAAKTGQSVEKLLDSIV-RLN  269 (299)
T ss_dssp             CCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHTTTTBCCCCCSGGGHHHHHHHCCCHHHHHHHHH-HHT
T ss_pred             cccCccceeehhHHHHHHHHHhcCCceEeecceecHHHHhHHHhhCCccccccchHHHHHHHHhCCcHHHHHHHHH-HHh
Confidence            4444444455678999998754332 2111223456677888433  55567778899999999999999998773 355


Q ss_pred             HHhcCCCHHHHHhHcCCCCCCCHHHH
Q 031498          121 DMIKGKTPEEIRKTFNIKNDFSPDEE  146 (158)
Q Consensus       121 ~~i~~ks~eeir~~f~i~~d~t~eee  146 (158)
                      .-..|++   |--...++++|||++-
T Consensus       270 ~gf~g~~---IlG~~~leDE~Tp~~V  292 (299)
T d1lvoa_         270 KGFGGRT---ILSYGSLCDEFTPTEV  292 (299)
T ss_dssp             TCCTTCC---BTTBSSCCCCSCHHHH
T ss_pred             cCCCCce---ecccccccccCCHHHH
Confidence            5555555   4556668888999974

>d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Human coronavirus 229E [TaxId: 11137]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)
species: Human coronavirus 229E [TaxId: 11137]

Probab=80.46  E-value=0.72  Score=33.55  Aligned_cols=101  Identities=16%  Similarity=0.269  Sum_probs=67.3

Q ss_pred             eecCCCCHHHHHHHHHHHHHhcccCCCC-CCCCCCCcchhchHHHh--hccCChHHHHHHHHhhhccCchhHHHHHHHHH
Q 031498           43 IPLPNVTSTILSKVIEYCKKHVEAGSGD-KKDDKSTEDDLKTWDAD--FVKVDQNTLFDLILAANYLNIKGLLDLTCQTV  119 (158)
Q Consensus        43 Ipl~~i~~~~L~~Ii~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~--Fl~~~~~~l~~Ll~AA~~L~i~~L~~~~~~~i  119 (158)
                      ..++.-+.-.-.-|+.|++-+--+..+- -.......+.+.+|-..  |-.+..+..+.+|.|..=-++.+|+...-+ +
T Consensus       190 ~Q~~~~d~~~T~NVVAwLYAAiln~~~w~l~~~~~svedfN~WA~~Ngft~~~~~~~~~~Laa~TGV~V~~lL~aI~~-L  268 (300)
T d1p9sa_         190 LQVESANQMLTVNVVAFLYAAILNGCTWWLKGEKLFVEHYNEWAQANGFTAMNGEDAFSILAAKTGVCVERLLHAIQV-L  268 (300)
T ss_dssp             CCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHTTTTBCCCCCGGGCSHHHHTTTCCHHHHHHHHHH-H
T ss_pred             hhccCccceeehhHHHHHHHHHHcCCcceeccceecHHHHhHHHhhCCccccchhhHHHHHHHHhCCCHHHHHHHHHH-H
Confidence            3444444445567899999886543221 11223456667888433  555777788999999999999999887655 5


Q ss_pred             HHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 031498          120 ADMIKGKTPEEIRKTFNIKNDFSPDEEE  147 (158)
Q Consensus       120 a~~i~~ks~eeir~~f~i~~d~t~eee~  147 (158)
                      +.-..|++   |--...++++|||++--
T Consensus       269 ~~gf~g~~---IlG~~~leDE~Tp~~V~  293 (300)
T d1p9sa_         269 NNGFGGKQ---ILGYSSLNDEFSINEVV  293 (300)
T ss_dssp             HTCCTTCC---BTTBSSCCCCCCHHHHH
T ss_pred             hcCCCCce---ecccccccccCCHHHHH
Confidence            55555555   55566688889999753