Citrus Sinensis ID: 031499

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMVSSFRSVFYSYVI
Secondary Structure (PSIPRED)
cEEEcccccEEEEEEEEEEccccccEEEEEEEEcccccEEcccccEEEEEcccccEEEcccEEccccHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEEEEcccccccccccccccccccccEEc
Secondary Structure Prediction (SSPRO)
cEEccccccEEEEEEEEEcccccccEEEEEEEccccccEEEccccEEEEEEcccccEccccHccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHcccccEEEEEEEEEEEEccEEEEEccccHEHHHHcccccEEEEEEEc
Coil and Loop (DISEMBL)
msvdlkrgetlpihinmtfpalpcdvlsvdaidmsgkhevdldTNIWKLRLNSYghiigteylTDLVEKEHEehkhdhnkdhkddideklhafgfdedAENMIKKVKHALesgegcrvygVLDVQRVAGNFHISVHGLNIYVAQMVSSFRSVFYSYVI
Flexible Loop (DISEMBL)
MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYLTDLVEKEHEEHkhdhnkdhkddIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMVSSFRSVFYSYVI
Low Complexity Region (SEG)
MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYLTDLVekeheehkhdhnkdhkddidekLHAFGFDEDAENMIKKVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMvssfrsvfysyvI
Disordered region (IsUnstruct)
*********TLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYLTDLV***********************HAFGFDEDAENMIKKVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMVSSFRSVFYSYV*
Disordered Region (DISOPRED)
MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYLTDL***********HNKDHKDDIDEKLHAFGFDEDAENMI******LESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMVSSFRSVFYSYVI
Disordered Region (DISEMBL)
MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYLTDLVEK**************DDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMVSSFRSVFYSYVI
Disordered Region (DISPRO)
MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMVSSFRSVFYSYVI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMVSSFRSVFYSYVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q803I2	383	Endoplasmic reticulum-Gol	yes	no	0.848	0.349	0.312	1e-14
Q54DW2	383	Probable endoplasmic reti	yes	no	0.822	0.339	0.317	5e-14
Q5EAE0	383	Endoplasmic reticulum-Gol	yes	no	0.848	0.349	0.287	3e-13
Q4R8X1	382	Endoplasmic reticulum-Gol	N/A	no	0.810	0.335	0.290	6e-13
Q6NVS2	384	Endoplasmic reticulum-Gol	yes	no	0.835	0.343	0.295	8e-13
Q66KH2	389	Endoplasmic reticulum-Gol	N/A	no	0.835	0.339	0.295	9e-13
Q9CQE7	383	Endoplasmic reticulum-Gol	yes	no	0.848	0.349	0.287	1e-12
Q9Y282	383	Endoplasmic reticulum-Gol	yes	no	0.810	0.334	0.289	1e-12
Q5R8G3	383	Endoplasmic reticulum-Gol	yes	no	0.848	0.349	0.281	2e-12
Q09895	390	Uncharacterized protein C	yes	no	0.829	0.335	0.286	3e-09

>sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 26/160 (16%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           + VD  RG+ L I+I++ FP +PC  LS+DA+D++G+ ++D++ N++K RL+  G  + T
Sbjct: 58  LFVDTSRGDKLRINIDVIFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGQPVTT 117

Query: 61  EYLTDLVEKEHE-------------EHKHDHNKD------HKDDIDEKLHAFGFDEDAEN 101
           E     + KE E             E  +    D        DD+ E     G+     +
Sbjct: 118 EAEKHDLGKEEEGVFDPSTLDPDRCESCYGAETDDLKCCNTCDDVREAYRRRGWAFKTPD 177

Query: 102 MIKKVKH-------ALESGEGCRVYGVLDVQRVAGNFHIS 134
            I++ K          +  EGC+VYG L+V +VAGNFH +
Sbjct: 178 TIEQCKREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFA 217

Possible role in transport between endoplasmic reticulum and Golgi.
Danio rerio (taxid: 7955)

>sp|Q54DW2|ERGI3_DICDI Probable endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Dictyostelium discoideum GN=ergic3 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 34/164 (20%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           + VD  RGE L I++++TF  LPC  LS+DA+D+SG+H+ D+  NI+K RL+  G  I  
Sbjct: 57  LFVDTTRGEKLKINMDITFHHLPCAYLSLDAMDVSGEHQFDVAHNIFKKRLSPTGQPI-- 114

Query: 61  EYLTDLVEKEHEEHKHDHNKDHKDDI---------------------DEKLHAF---GFD 96
             +     +E E +K +  KD+ D +                     +E   A+   G+ 
Sbjct: 115 --IEAPPIREEEINKKESVKDNNDVVGCGSCYGAEDPSKGIGCCNTCEEVRVAYSKKGWG 172

Query: 97  EDAENMIKKVKHAL------ESGEGCRVYGVLDVQRVAGNFHIS 134
            D   + + ++         ++GEGC+VYG + V +VAGNFH +
Sbjct: 173 LDPSGIPQCIREGFTKNLVEQNGEGCQVYGFILVNKVAGNFHFA 216

Possible role in transport between endoplasmic reticulum and Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5EAE0|ERGI3_BOVIN Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus GN=ERGIC3 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 26/160 (16%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           + VD  RG+ L I+IN+ FP +PC  LS+DA+D++G+ ++D++ N++K RL+  G  + +
Sbjct: 58  LYVDKSRGDKLKININVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKKRLDKDGFPVSS 117

Query: 61  E-------------YLTDLVEKEHEEHKHDHNKD------HKDDIDEKLHAFGFDEDAEN 101
           E             +  D ++ +  E  +    +        +D+ E     G+     +
Sbjct: 118 EAERHELGKVEVKVFDPDSLDPDRCESCYGAEMEDIKCCNSCEDVREAYRRRGWAFKNPD 177

Query: 102 MIKKV-------KHALESGEGCRVYGVLDVQRVAGNFHIS 134
            I++        K   +  EGC+VYG L+V +VAGNFH +
Sbjct: 178 TIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFA 217

Possible role in transport between endoplasmic reticulum and Golgi.

Bos taurus (taxid: 9913)

>sp|Q4R8X1|ERGI3_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Macaca fascicularis GN=ERGIC3 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 37/165 (22%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           + VD  RG+ L I+I++ FP +PC  LS+DA+D++G+ ++D++ N++K RL+  G  + +
Sbjct: 58  LYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGTPVSS 117

Query: 61  EYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAE-----NMIKKVKHAL----- 110
           E       + HE  K +      D +D       +  +AE     N  + V+ A      
Sbjct: 118 E------AERHELGKVEVTVFGPDSLDPDRCESCYGAEAEDIKCCNTCEDVREAYRRRGA 171

Query: 111 ---------------------ESGEGCRVYGVLDVQRVAGNFHIS 134
                                +  EGC+VYG L+V +VAGNFH +
Sbjct: 172 FKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFA 216

Possible role in transport between endoplasmic reticulum and Golgi.

Macaca fascicularis (taxid: 9541)

>sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 27/159 (16%)

Query: 3   VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEY 62
           VD  RG+ L I+I++ FP +PC  LS+DA+D++G+ ++D++ N++K RL+     + +E 
Sbjct: 60  VDKSRGDKLKINIDVIFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDKKPVTSEA 119

Query: 63  LTDLVEKEHE-----EHKHDHNK---------------DHKDDIDEKLHAFGFDEDAENM 102
               + K  E         D N+               +  DD+ E     G+     + 
Sbjct: 120 DRHELGKSEEHVVFDPKSLDPNRCESCYGAETDDFSCCNTCDDVREAYRRRGWAFKTPDS 179

Query: 103 IKKVKH-------ALESGEGCRVYGVLDVQRVAGNFHIS 134
           I++ K          +  EGC+VYG L+V +VAGNFH +
Sbjct: 180 IEQCKREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFA 218

Possible role in transport between endoplasmic reticulum and Golgi.

Xenopus tropicalis (taxid: 8364)

>sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 27/159 (16%)

Query: 3   VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEY 62
           VD  RG+ L I+I++ FP +PC  LS+DA+D++G+ ++D++ N++K RL+     + +E 
Sbjct: 60  VDKSRGDKLKINIDVIFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDLDKKPVTSEA 119

Query: 63  LTDLVEKEHEE-----HKHDHNK---------------DHKDDIDEKLHAFGFDEDAENM 102
               + K  E+        D N+               +  DD+ E     G+     + 
Sbjct: 120 DRHELGKSEEQVVFDPKTLDPNRCESCYGAETDDFSCCNSCDDVREAYRRKGWAFKTPDS 179

Query: 103 IKKVKH-------ALESGEGCRVYGVLDVQRVAGNFHIS 134
           I++ K          +  EGC+VYG L+V +VAGNFH +
Sbjct: 180 IEQCKREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFA 218

Possible role in transport between endoplasmic reticulum and Golgi.

Xenopus laevis (taxid: 8355)

>sp|Q9CQE7|ERGI3_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Mus musculus GN=Ergic3 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 26/160 (16%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           + VD  RG+ L I+I++ FP +PC  LS+DA+D++G+ ++D++ N++K RL+  G  + +
Sbjct: 58  LYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKKRLDKDGVPVSS 117

Query: 61  EY----LTDLVEKEHEEHKHDHNK---------------DHKDDIDEKLHAFGFDEDAEN 101
           E     L  +     + +  D N+               +  +D+ E     G+     +
Sbjct: 118 EAERHELGKVEVTVFDPNSLDPNRCESCYGAESEDIKCCNSCEDVREAYRRRGWAFKNPD 177

Query: 102 MIKKV-------KHALESGEGCRVYGVLDVQRVAGNFHIS 134
            I++        K   +  EGC+VYG L+V +VAGNFH +
Sbjct: 178 TIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFA 217

Possible role in transport between endoplasmic reticulum and Golgi.

Mus musculus (taxid: 10090)

>sp|Q9Y282|ERGI3_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens GN=ERGIC3 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 38/166 (22%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           + VD  RG+ L I+I++ FP +PC  LS+DA+D++G+ ++D++ N++K RL+  G  + +
Sbjct: 58  LYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGIPVSS 117

Query: 61  EYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAE-----NMIKKVKHAL----- 110
           E       + HE  K +      D +D       +  +AE     N  + V+ A      
Sbjct: 118 E------AERHELGKVEVTVFDPDSLDPDRCESCYGAEAEDIKCCNTCEDVREAYRRRGW 171

Query: 111 ----------------------ESGEGCRVYGVLDVQRVAGNFHIS 134
                                 +  EGC+VYG L+V +VAGNFH +
Sbjct: 172 AFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFA 217

Possible role in transport between endoplasmic reticulum and Golgi.

Homo sapiens (taxid: 9606)

>sp|Q5R8G3|ERGI3_PONAB Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii GN=ERGIC3 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 26/160 (16%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           + VD  RG+ L I+I++ FP +PC  LS+DA+D++G+ ++D++ N++K RL+  G  + +
Sbjct: 58  LYVDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGIPVSS 117

Query: 61  E-------------YLTDLVEKEHEEHKHDHNKD------HKDDIDEKLHAFGFDEDAEN 101
           E             +  D ++ +  E  +    +        +D+ E     G+     +
Sbjct: 118 EAERHELGKVEVTVFDPDSLDPDRCESCYGAEAEDIKCCNTCEDVRETYRRRGWAFKNPD 177

Query: 102 MIKKV-------KHALESGEGCRVYGVLDVQRVAGNFHIS 134
            I++        K   +  EGC+VYG L+V +VAGNFH +
Sbjct: 178 TIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFA 217

Possible role in transport between endoplasmic reticulum and Golgi.

Pongo abelii (taxid: 9601)

>sp|Q09895|YAI8_SCHPO Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 26/157 (16%)

Query: 3   VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEY 62
           V+   G+ + I+ N+TFP +PC +L+VD +D+SG+ + D+   + K RL+  G II  + 
Sbjct: 60  VNPSHGDRMEINFNITFPRIPCQILTVDVLDVSGEFQRDIHHTVSKTRLSPSGEIISVDD 119

Query: 63  LTDLVEKEH---------------EEHKHDHNKDHKDDIDEKLHAFG------FDEDAEN 101
           L D+  ++                 +   +      +  D    A+G       D DA  
Sbjct: 120 L-DIGNQQSISDDGAAECGDCYGAADFAPEDTPGCCNTCDAVRDAYGKAHWRIGDVDAFK 178

Query: 102 MIK----KVKHALESGEGCRVYGVLDVQRVAGNFHIS 134
             K    K  +  +  EGC + G L V R+AGNFHI+
Sbjct: 179 QCKDENFKELYEAQKVEGCNLAGQLSVNRMAGNFHIA 215

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
356575088	347	PREDICTED: endoplasmic reticulum-Golgi i	0.917	0.417	0.828	2e-65
255637400	347	unknown [Glycine max]	0.917	0.417	0.828	2e-65
297830940	354	hypothetical protein ARALYDRAFT_479742 [	0.924	0.412	0.794	1e-63
30686584	354	Endoplasmic reticulum vesicle transporte	0.924	0.412	0.794	2e-63
11036454	333	unnamed protein product [Arabidopsis tha	0.924	0.438	0.794	2e-63
225446891	351	PREDICTED: endoplasmic reticulum-Golgi i	0.924	0.415	0.863	3e-62
224086657	351	predicted protein [Populus trichocarpa]	0.924	0.415	0.828	2e-60
356547537	351	PREDICTED: probable endoplasmic reticulu	0.924	0.415	0.778	4e-60
224137484	351	predicted protein [Populus trichocarpa]	0.924	0.415	0.815	1e-59
449445069	388	PREDICTED: endoplasmic reticulum-Golgi i	0.905	0.368	0.808	3e-57

>gi|356575088|ref|XP_003555674.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Glycine max]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/146 (82%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           MSVDLKRGETLPIHINMTFP+LPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT
Sbjct: 58  MSVDLKRGETLPIHINMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 117

Query: 61  EYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYG 120
           EY++DLVEKEH  HKHD NK+H+   ++K+H    DE  EN+IKKVK AL++GEGCRVYG
Sbjct: 118 EYISDLVEKEHTHHKHDDNKNHEHS-EQKIHLQNLDESTENIIKKVKEALKNGEGCRVYG 176

Query: 121 VLDVQRVAGNFHISVHGLNIYVAQMV 146
           VLDVQRVAGNFHISVHGLNIYVAQM+
Sbjct: 177 VLDVQRVAGNFHISVHGLNIYVAQMI 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637400|gb|ACU19028.1| unknown [Glycine max]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/146 (82%), Positives = 133/146 (91%), Gaps = 1/146 (0%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           MSVDLKRGETLPIHINMTFP+LPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT
Sbjct: 58  MSVDLKRGETLPIHINMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 117

Query: 61  EYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYG 120
           EY++DLVEKEH  HKHD NK+H+   ++K+H    DE  EN+IKKVK AL++GEGCRVYG
Sbjct: 118 EYVSDLVEKEHTHHKHDDNKNHEHS-EQKIHLQNLDESTENIIKKVKEALKNGEGCRVYG 176

Query: 121 VLDVQRVAGNFHISVHGLNIYVAQMV 146
           VLDVQRVAGNFHISVHGLNIYVAQM+
Sbjct: 177 VLDVQRVAGNFHISVHGLNIYVAQMI 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830940|ref|XP_002883352.1| hypothetical protein ARALYDRAFT_479742 [Arabidopsis lyrata subsp. lyrata] gi|297329192|gb|EFH59611.1| hypothetical protein ARALYDRAFT_479742 [Arabidopsis lyrata subsp. lyrata]

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 120/151 (79%), Positives = 133/151 (88%), Gaps = 5/151 (3%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           MSVDLKRGETLPIH+NMTFP+LPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNS+GHIIGT
Sbjct: 58  MSVDLKRGETLPIHVNMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSHGHIIGT 117

Query: 61  EYLTDLVEKEHE----EHKHDHNKDHKDDID-EKLHAFGFDEDAENMIKKVKHALESGEG 115
           EY++DLVEK HE     HKHD  ++HK++ + E L+  GFD+ AE MIKKVK AL  GEG
Sbjct: 118 EYISDLVEKGHEHGHSPHKHDGKEEHKNETETEALNILGFDQAAETMIKKVKQALADGEG 177

Query: 116 CRVYGVLDVQRVAGNFHISVHGLNIYVAQMV 146
           CRVYGVLDVQRVAGNFHISVHGLNIYVAQM+
Sbjct: 178 CRVYGVLDVQRVAGNFHISVHGLNIYVAQMI 208

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686584|ref|NP_188868.2| Endoplasmic reticulum vesicle transporter protein [Arabidopsis thaliana] gi|13877821|gb|AAK43988.1|AF370173_1 unknown protein [Arabidopsis thaliana] gi|51969000|dbj|BAD43192.1| unknown protein [Arabidopsis thaliana] gi|51970108|dbj|BAD43746.1| unknown protein [Arabidopsis thaliana] gi|51970556|dbj|BAD43970.1| unknown protein [Arabidopsis thaliana] gi|51970734|dbj|BAD44059.1| unknown protein [Arabidopsis thaliana] gi|62319967|dbj|BAD94071.1| hypothetical protein [Arabidopsis thaliana] gi|332643097|gb|AEE76618.1| Endoplasmic reticulum vesicle transporter protein [Arabidopsis thaliana]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/151 (79%), Positives = 133/151 (88%), Gaps = 5/151 (3%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           MSVDLKRGETLPIH+NMTFP+LPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNS+GHIIGT
Sbjct: 58  MSVDLKRGETLPIHVNMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSHGHIIGT 117

Query: 61  EYLTDLVEKEHE----EHKHDHNKDHKDDID-EKLHAFGFDEDAENMIKKVKHALESGEG 115
           EY++DLVEK HE     HKHD  ++HK++ + E L+  GFD+ AE MIKKVK AL  GEG
Sbjct: 118 EYISDLVEKGHEHGHSPHKHDGKEEHKNETETEALNILGFDQAAETMIKKVKQALADGEG 177

Query: 116 CRVYGVLDVQRVAGNFHISVHGLNIYVAQMV 146
           CRVYGVLDVQRVAGNFHISVHGLNIYVAQM+
Sbjct: 178 CRVYGVLDVQRVAGNFHISVHGLNIYVAQMI 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11036454|dbj|BAB17274.1| unnamed protein product [Arabidopsis thaliana]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/151 (79%), Positives = 133/151 (88%), Gaps = 5/151 (3%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           MSVDLKRGETLPIH+NMTFP+LPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNS+GHIIGT
Sbjct: 58  MSVDLKRGETLPIHVNMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSHGHIIGT 117

Query: 61  EYLTDLVEKEHE----EHKHDHNKDHKDDID-EKLHAFGFDEDAENMIKKVKHALESGEG 115
           EY++DLVEK HE     HKHD  ++HK++ + E L+  GFD+ AE MIKKVK AL  GEG
Sbjct: 118 EYISDLVEKGHEHGHSPHKHDGKEEHKNETETEALNILGFDQAAETMIKKVKQALADGEG 177

Query: 116 CRVYGVLDVQRVAGNFHISVHGLNIYVAQMV 146
           CRVYGVLDVQRVAGNFHISVHGLNIYVAQM+
Sbjct: 178 CRVYGVLDVQRVAGNFHISVHGLNIYVAQMI 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446891|ref|XP_002284045.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Vitis vinifera] gi|296086333|emb|CBI31774.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 126/146 (86%), Positives = 135/146 (92%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           MSVDLKRGETLPIHINMTFP+LPCDVLSVDAIDMSGKHEVDLDTNIWKLRLN  G IIGT
Sbjct: 58  MSVDLKRGETLPIHINMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNRDGFIIGT 117

Query: 61  EYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYG 120
           EYL+DLVEKEH +HKHDHNKDH  D D+KLHA  FD+DAENM+KKVK AL +GEGCRVYG
Sbjct: 118 EYLSDLVEKEHADHKHDHNKDHHGDSDQKLHAHSFDQDAENMVKKVKQALANGEGCRVYG 177

Query: 121 VLDVQRVAGNFHISVHGLNIYVAQMV 146
           VLDVQRVAGNFHISVHGLNI+VAQM+
Sbjct: 178 VLDVQRVAGNFHISVHGLNIFVAQMI 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086657|ref|XP_002307923.1| predicted protein [Populus trichocarpa] gi|222853899|gb|EEE91446.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/146 (82%), Positives = 131/146 (89%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           MSVDL RGETLPIHIN+TFP+LPCDVLSVDAIDMSGKHEVDLDT+IWKLRLNSYGHI GT
Sbjct: 58  MSVDLTRGETLPIHINITFPSLPCDVLSVDAIDMSGKHEVDLDTSIWKLRLNSYGHITGT 117

Query: 61  EYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYG 120
           EYL+DLVEKEHE H HDHNKDH +D   K H  GFD+ AE M+KKVK AL +GEGCRVYG
Sbjct: 118 EYLSDLVEKEHEAHNHDHNKDHHEDSHAKQHTHGFDDAAETMVKKVKQALANGEGCRVYG 177

Query: 121 VLDVQRVAGNFHISVHGLNIYVAQMV 146
           VLDVQRVAGNFHISVHGLNI+VAQM+
Sbjct: 178 VLDVQRVAGNFHISVHGLNIFVAQMI 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547537|ref|XP_003542168.1| PREDICTED: probable endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Glycine max]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/149 (77%), Positives = 129/149 (86%), Gaps = 3/149 (2%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           MSVDLKRGETLPIHINMTFP+LPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT
Sbjct: 58  MSVDLKRGETLPIHINMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 117

Query: 61  EYLTDLVEKEH---EEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCR 117
           EY++DLVEKEH   E   +  +  H +  ++K+H    DE  EN+IKKVK AL++GEGCR
Sbjct: 118 EYISDLVEKEHTNQEHDDNKDHDHHHEHSEQKIHLQNLDESTENIIKKVKEALKNGEGCR 177

Query: 118 VYGVLDVQRVAGNFHISVHGLNIYVAQMV 146
           VYGVLDVQRVAGNFHISVHGLNIYVAQM+
Sbjct: 178 VYGVLDVQRVAGNFHISVHGLNIYVAQMI 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137484|ref|XP_002322569.1| predicted protein [Populus trichocarpa] gi|222867199|gb|EEF04330.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/146 (81%), Positives = 131/146 (89%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           MSVDL+RGE LPIH+N+TFP+LPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNS+GHI GT
Sbjct: 58  MSVDLQRGEILPIHVNITFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSHGHITGT 117

Query: 61  EYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYG 120
           EYL+DLVEKEHE H HDH+KDH  D  E+ H  GFD+ AE MIKKVK AL +GEGCRVYG
Sbjct: 118 EYLSDLVEKEHEAHNHDHDKDHHKDSHEEQHTHGFDDAAETMIKKVKQALANGEGCRVYG 177

Query: 121 VLDVQRVAGNFHISVHGLNIYVAQMV 146
           VLDVQRVAGNFHISVHGLNI+VAQM+
Sbjct: 178 VLDVQRVAGNFHISVHGLNIFVAQMI 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445069|ref|XP_004140296.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis sativus]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 130/146 (89%), Gaps = 3/146 (2%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
           MSVDLKRGETLPIHINMTFP+LPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNS+G IIGT
Sbjct: 100 MSVDLKRGETLPIHINMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSHGQIIGT 159

Query: 61  EYLTDLVEKEHEEHKHDHNKDHKDDIDEKLHAFGFDEDAENMIKKVKHALESGEGCRVYG 120
           EYL+DLVEKEH +HKHDH+ D + D     H  GFD+ AEN++KKVK ALE  +GCRVYG
Sbjct: 160 EYLSDLVEKEHVDHKHDHDHDKEKDHP---HIHGFDQAAENLVKKVKQALEEAQGCRVYG 216

Query: 121 VLDVQRVAGNFHISVHGLNIYVAQMV 146
           VLDVQRVAGNFHISVHGLNI+VAQM+
Sbjct: 217 VLDVQRVAGNFHISVHGLNIFVAQMI 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2087817	354	AT3G22290 "AT3G22290" [Arabido	0.917	0.409	0.726	1.7e-52
TAIR|locus:2034330	489	AT1G36050 "AT1G36050" [Arabido	0.354	0.114	0.535	1.4e-17
TAIR|locus:2015056	386	AT1G22200 "AT1G22200" [Arabido	0.367	0.150	0.448	4.3e-17
UNIPROTKB|Q5EAE0	383	ERGIC3 "Endoplasmic reticulum-	0.373	0.154	0.423	5.6e-16
ZFIN|ZDB-GENE-040426-795	383	ergic3 "ERGIC and golgi 3" [Da	0.373	0.154	0.423	9.3e-16
DICTYBASE|DDB_G0292002	383	ergic3 "endoplasmic reticulum-	0.354	0.146	0.5	2.5e-15
UNIPROTKB|Q9Y282	383	ERGIC3 "Endoplasmic reticulum-	0.373	0.154	0.406	3.3e-15
MGI|MGI:1913616	383	Ergic3 "ERGIC and golgi 3" [Mu	0.373	0.154	0.406	3.3e-15
ASPGD|ASPL0000037804	437	AN2738 [Emericella nidulans (t	0.310	0.112	0.448	4.2e-13
POMBASE|SPAC24B11.08c	390	SPAC24B11.08c "COPII-coated ve	0.386	0.156	0.377	4.7e-13

TAIR|locus:2087817 AT3G22290 "AT3G22290" [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 109/150 (72%), Positives = 116/150 (77%)

Query:     1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGT 60
             MSVDLKRGETLPIH+NMTFP+LPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNS+GHIIGT
Sbjct:    58 MSVDLKRGETLPIHVNMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSHGHIIGT 117

Query:    61 EYLTDLVXXXXXXXXX-----XXXXXXXXXXXXXLHAFGFDEDAENMIKKVKHALESGEG 115
             EY++DLV                           L+  GFD+ AE MIKKVK AL  GEG
Sbjct:   118 EYISDLVEKGHEHGHSPHKHDGKEEHKNETETEALNILGFDQAAETMIKKVKQALADGEG 177

Query:   116 CRVYGVLDVQRVAGNFHISVHGLNIYVAQM 145
             CRVYGVLDVQRVAGNFHISVHGLNIYVAQM
Sbjct:   178 CRVYGVLDVQRVAGNFHISVHGLNIYVAQM 207

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2034330 AT1G36050 "AT1G36050" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
 Identities = 30/56 (53%), Positives = 42/56 (75%)

Query:     3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHII 58
             VD  RGETL I+ ++TFPAL C +LSVDA+D+SG+  +D+  +I K RL+S G+ I
Sbjct:    61 VDTSRGETLRINFDITFPALACSILSVDAMDISGELHLDVKHDIIKRRLDSNGNTI 116

GO:0003674 "molecular_function" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2015056 AT1G22200 "AT1G22200" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
 Identities = 26/58 (44%), Positives = 43/58 (74%)

Query:     1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHII 58
             + VD  RGE L I+ ++TFPAL C ++S+D++D+SG+  +D+  +I K RL+S G++I
Sbjct:    59 LRVDTSRGEKLRINFDVTFPALQCSIISLDSMDISGERHLDVRHDIIKRRLDSSGNVI 116

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

UNIPROTKB|Q5EAE0 ERGIC3 "Endoplasmic reticulum-Golgi intermediate compartment protein 3" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
 Identities = 25/59 (42%), Positives = 43/59 (72%)

Query:     3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTE 61
             VD  RG+ L I+IN+ FP +PC  LS+DA+D++G+ ++D++ N++K RL+  G  + +E
Sbjct:    60 VDKSRGDKLKININVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKKRLDKDGFPVSSE 118

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-795 ergic3 "ERGIC and golgi 3" [Danio rerio (taxid:7955)]

 Score = 139 (54.0 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
 Identities = 25/59 (42%), Positives = 43/59 (72%)

Query:     3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTE 61
             VD  RG+ L I+I++ FP +PC  LS+DA+D++G+ ++D++ N++K RL+  G  + TE
Sbjct:    60 VDTSRGDKLRINIDVIFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGQPVTTE 118

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

DICTYBASE|DDB_G0292002 ergic3 "endoplasmic reticulum-golgi intermediate compartment protein 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 136 (52.9 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
 Identities = 28/56 (50%), Positives = 40/56 (71%)

Query:     3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHII 58
             VD  RGE L I++++TF  LPC  LS+DA+D+SG+H+ D+  NI+K RL+  G  I
Sbjct:    59 VDTTRGEKLKINMDITFHHLPCAYLSLDAMDVSGEHQFDVAHNIFKKRLSPTGQPI 114

GO:0003674 "molecular_function" evidence=ND

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q9Y282 ERGIC3 "Endoplasmic reticulum-Golgi intermediate compartment protein 3" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
 Identities = 24/59 (40%), Positives = 43/59 (72%)

Query:     3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTE 61
             VD  RG+ L I+I++ FP +PC  LS+DA+D++G+ ++D++ N++K RL+  G  + +E
Sbjct:    60 VDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKQRLDKDGIPVSSE 118

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

MGI|MGI:1913616 Ergic3 "ERGIC and golgi 3" [Mus musculus (taxid:10090)]

 Score = 134 (52.2 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
 Identities = 24/59 (40%), Positives = 43/59 (72%)

Query:     3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTE 61
             VD  RG+ L I+I++ FP +PC  LS+DA+D++G+ ++D++ N++K RL+  G  + +E
Sbjct:    60 VDKSRGDKLKINIDVLFPHMPCAYLSIDAMDVAGEQQLDVEHNLFKKRLDKDGVPVSSE 118

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

ASPGD|ASPL0000037804 AN2738 [Emericella nidulans (taxid:162425)]

 Score = 127 (49.8 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
 Identities = 22/49 (44%), Positives = 36/49 (73%)

Query:     3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRL 51
             VD  RGE + IH+N+TFP LPC++ ++D +D+SG+ +V +   + K+RL
Sbjct:    60 VDKSRGEKMEIHLNITFPRLPCELTTLDVMDVSGEQQVGVAHGVNKVRL 108

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

POMBASE|SPAC24B11.08c SPAC24B11.08c "COPII-coated vesicle component Erv46 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 126 (49.4 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
 Identities = 23/61 (37%), Positives = 39/61 (63%)

Query:     3 VDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEY 62
             V+   G+ + I+ N+TFP +PC +L+VD +D+SG+ + D+   + K RL+  G II  + 
Sbjct:    60 VNPSHGDRMEINFNITFPRIPCQILTVDVLDVSGEFQRDIHHTVSKTRLSPSGEIISVDD 119

Query:    63 L 63
             L
Sbjct:   120 L 120

GO:0000139 "Golgi membrane" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030134 "ER to Golgi transport vesicle" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
pfam13850	105	pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi In	5e-22
pfam07970	222	pfam07970, COPIIcoated_ERV, Endoplasmic reticulum	2e-06

>gnl|CDD|206021 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)

 Score = 84.5 bits (210), Expect = 5e-22
 Identities = 28/53 (52%), Positives = 43/53 (81%)

Query: 1   MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNS 53
           + VD  RGE L I++++TFP LPCD+LS+D +D+SG+H++D++ NI K RL+S
Sbjct: 53  LVVDTSRGEKLRINLDITFPRLPCDLLSLDVMDVSGEHQLDVEHNIKKTRLDS 105

This family is the N-terminal of ERGIC proteins, ER-Golgi intermediate compartment clusters, otherwise known as Ervs, and is associated with family COPIIcoated_ERV, pfam07970. Length = 105

>gnl|CDD|219673 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle transporter

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query: 104 KKVKHALESGEGCRVYGVLDVQRVAGNFHIS 134
           +K+K    S EGCRV G L+V RVAGNFHI+
Sbjct: 44  EKLKAQKNSNEGCRVKGTLEVNRVAGNFHIA 74

This family is conserved from plants and fungi to humans. Erv46 works in close conjunction with Erv41 and together they form a complex which cycles between the endoplasmic reticulum and Golgi complex. Erv46-41 interacts strongly with the endoplasmic reticulum glucosidase II. Mammalian glucosidase II comprises a catalytic alpha-subunit and a 58 kDa beta subunit, which is required for ER localisation. All proteins identified biochemically as Erv41p-Erv46p interactors are localised to the early secretory pathway and are involved in protein maturation and processing in the ER and/or sorting into COPII vesicles for transport to the Golgi. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
KOG2667	379	consensus COPII vesicle protein [Intracellular tra	100.0
PF07970	222	COPIIcoated_ERV: Endoplasmic reticulum vesicle tra	99.7
PF13850	96	ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate	99.61

>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-33  Score=235.91  Aligned_cols=148  Identities=34%  Similarity=0.489  Sum_probs=104.6

Q ss_pred             CeecCCCCCeeeEEEEEEECcccCCeeeeeeeecCCCeeeccCCCeEEEeecCCCeeeccee---------cc-hhh-hh
Q 031499            1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSYGHIIGTEY---------LT-DLV-EK   69 (158)
Q Consensus         1 ~~VD~~~~~~l~In~DItfP~~PC~~LslDv~D~~G~~~~dv~~~i~k~RLd~~G~~i~~~~---------~~-~~~-~~   69 (158)
                      ++||.+++++|+||||||||+|||++|+|||||.+|+.+++++++|+|.|||.  ++|+.+.         .. +.. ..
T Consensus        58 ~~vd~s~~e~l~in~DItfp~lpC~~lsVDv~D~sg~~~l~i~~~i~k~rl~~--~~i~~~~~~~~~~~~k~~~p~~~~~  135 (379)
T KOG2667|consen   58 LFVDDSRDEKLQINFDITFPALPCSILSVDVMDVSGEMVLDIDHLIYKLRLDP--EPIPLTIRRFDIFQHKQTIPTTDPI  135 (379)
T ss_pred             EEEeCCCCceeeeeeeEEeccCccceEEEEeeccccccccchhhhhhhcccCc--cccccchhhhcccccccccCCCCcc
Confidence            47999999999999999999999999999999999999999999999999999  4443211         00 100 13


Q ss_pred             hhccccC--------CCCCCchHHHHHH----hhhcCCCCchhHHHH---HHHHhhcCCCcceEEEEEEEeeeeeeEEEe
Q 031499           70 EHEEHKH--------DHNKDHKDDIDEK----LHAFGFDEDAENMIK---KVKHALESGEGCRVYGVLDVQRVAGNFHIS  134 (158)
Q Consensus        70 ~~~~~~~--------~~~~~~~~~v~~~----~~~~~~~~~~~~~~~---~~~~~~~~~EGCrI~G~l~VnKV~GnfHia  134 (158)
                      .|..|++        ..||++|+++.+.    +|++.......++-.   ....+.+.+|||||||+|+|||||||||||
T Consensus       136 ~c~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~g~~~~~~~~~~q~~~~~~~~~~~~~~geGCRi~G~l~VNKVaGnfHia  215 (379)
T KOG2667|consen  136 LCGLCYGAEDFNDGDIDCCNLCEDVREAYRKAGWDFADEDLIDQCKNEGFTNKAAEQKGEGCRIYGQLEVNKVAGNFHIA  215 (379)
T ss_pred             chhhhhhhhccccccchhhhcchHHHHHhhhccccccCccchhhhcccccccccCCCCCCceEEEEEEEEeeecceEEEc
Confidence            3444432        2367788887664    333332222222111   001133579999999999999999999999


Q ss_pred             cCCchhHHHHHhhccc
Q 031499          135 VHGLNIYVAQMVSSFR  150 (158)
Q Consensus       135 ~g~~~~~~~~~~~~~~  150 (158)
                      ||+....-..+.|++.
T Consensus       216 ~g~~~~~~~~h~hd~~  231 (379)
T KOG2667|consen  216 PGKSSQHSNAHVHDLS  231 (379)
T ss_pred             cCCCccccccccchhh
Confidence            9976655555555553

>PF07970 COPIIcoated_ERV: Endoplasmic reticulum vesicle transporter ; InterPro: IPR012936 This domain occurs in many hypothetical proteins, and also two partially characterised proteins

Probab=99.70  E-value=9.7e-18  Score=133.63  Aligned_cols=74  Identities=28%  Similarity=0.485  Sum_probs=51.0

Q ss_pred             CCCCCchHHHHHHhhhcCCCC-chhHHHHHHHH-------hhcCCCcceEEEEEEEeeeeeeEEEecCCchhHHHHHhhc
Q 031499           77 DHNKDHKDDIDEKLHAFGFDE-DAENMIKKVKH-------ALESGEGCRVYGVLDVQRVAGNFHISVHGLNIYVAQMVSS  148 (158)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~EGCrI~G~l~VnKV~GnfHia~g~~~~~~~~~~~~  148 (158)
                      ..||+||++|+++++.-.|.- +++.+.||.++       ..+.+|||||+|+|.||||+||||||||++......++|+
T Consensus         9 ~~CCnTC~~V~~ay~~~~w~~~~~~~~eQC~~~~~~~~~~~~~~~egCri~G~l~VnkV~Gnfhi~~g~~~~~~~~h~hd   88 (222)
T PF07970_consen    9 GKCCNTCEDVREAYRKKGWAFPDLENIEQCRREYVKKIKEQVNEGEGCRIYGSLEVNKVPGNFHIAPGRSFQQDGGHIHD   88 (222)
T ss_pred             CCcCcCHHHHHHHHHHhCCCCCCccccccccchhhhhhhhhccCCCCCEEEEEEEEEEEEEEEEEEecchhccCCcceee
Confidence            468999999987653332221 22333444432       3446799999999999999999999999976554555454


Q ss_pred             cc
Q 031499          149 FR  150 (158)
Q Consensus       149 ~~  150 (158)
                      +.
T Consensus        89 ~~   90 (222)
T PF07970_consen   89 LS   90 (222)
T ss_pred             hh
Confidence            43

One of these proteins, PTX1 Q96RQ1 from SWISSPROT, is a homeodomain-containing transcription factor involved in regulating all pituitary hormone genes []. This protein is down regulated in prostate carcinoma []. The other protein, ERGIC-32 Q969X5 from SWISSPROT, is involved in protein transport from the ER to the Golgi [].

>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)

Probab=99.61  E-value=6.5e-16  Score=108.35  Aligned_cols=44  Identities=48%  Similarity=0.881  Sum_probs=42.1

Q ss_pred             CeecCCCCCeeeEEEEEEECcccCCeeeeeeeecCCCeeeccCC
Q 031499            1 MSVDLKRGETLPIHINMTFPALPCDVLSVDAIDMSGKHEVDLDT   44 (158)
Q Consensus         1 ~~VD~~~~~~l~In~DItfP~~PC~~LslDv~D~~G~~~~dv~~   44 (158)
                      |.||++++++|+||||||||+|||++|++|++|++|++++|++|
T Consensus        53 ~~VD~~~~~~l~in~ditf~~~pC~~l~vDv~D~~G~~~~dv~h   96 (96)
T PF13850_consen   53 LVVDTSRDEKLQINFDITFPHMPCDFLSVDVQDASGDHQLDVTH   96 (96)
T ss_pred             EEEcCCCCceEEEEEEEEECCCccCeeeeEeEccCCCeeccccC
Confidence            57999999999999999999999999999999999999999876

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00