Citrus Sinensis ID: 031527

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEccEEEEEEEcccccccccEEEEEEccEEEEEEEcccccccccccccccccccEEEEcccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHccccccccccccccEEEEEEEcccEEEEEEEccccccccEEEEEEEccEEEEEEccccccEcccccccccccccEEEEEccEEEEEEEEccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccHcccccccc
Coil and Loop (DISEMBL)
maeklapekrhrflhngqtvfewDQTLDEINIyinlppnvhskqFYCKIQSKHIElgikgnppylnheltcpvktdssfwtleddvMHITLtkrdkgqtwaspimgqgqldpyvtDQEQKRLMLQRFqeenpgfdfsqaqftgscpdprtfmggirsd
Flexible Loop (DISEMBL)
maeklapekrhrflhngqTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFdfsqaqftgscpdprtfmggirsd
Low Complexity Region (SEG)
MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD
Disordered region (IsUnstruct)
***********RFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQ***************************************************
Disordered Region (DISOPRED)
********************FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLD*****************EENPGFDFSQAQ*****PD****MGG****
Disordered Region (DISEMBL)
********KRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD
Disordered Region (DISPRO)
*********RHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGI***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q9CQ48	157	NudC domain-containing pr	yes	no	0.860	0.866	0.385	7e-22
Q8WVJ2	157	NudC domain-containing pr	yes	no	0.860	0.866	0.385	9e-22
Q5M823	157	NudC domain-containing pr	yes	no	0.772	0.777	0.404	2e-21
Q9STN7	293	Protein BOBBER 2 OS=Arabi	no	no	0.765	0.412	0.299	2e-13
Q9LV09	304	Protein BOBBER 1 OS=Arabi	no	no	0.765	0.398	0.286	9e-13
O35685	332	Nuclear migration protein	no	no	0.816	0.388	0.248	2e-09
Q9Y266	331	Nuclear migration protein	no	no	0.816	0.389	0.248	6e-09
Q17QG2	332	Nuclear migration protein	no	no	0.816	0.388	0.248	8e-09
Q63525	332	Nuclear migration protein	no	no	0.816	0.388	0.242	9e-09
Q5ZIN1	341	Nuclear migration protein	no	no	0.772	0.357	0.243	3e-08

>sp|Q9CQ48|NUDC2_MOUSE NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1 SV=1

 Score =  102 bits (255), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 4/140 (2%)

Query: 8   EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
           E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKG 64

Query: 68  ELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
           +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++L L
Sbjct: 65  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 124

Query: 125 QRFQEENPGFDFSQAQFTGS 144
           +RFQ+ENPGFDFS A+ +G+
Sbjct: 125 ERFQKENPGFDFSGAEISGN 144

Mus musculus (taxid: 10090)

>sp|Q8WVJ2|NUDC2_HUMAN NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1 SV=1

 Score =  102 bits (254), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 4/140 (2%)

Query: 8   EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
           E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE-ILKG 64

Query: 68  ELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
           +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++L L
Sbjct: 65  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 124

Query: 125 QRFQEENPGFDFSQAQFTGS 144
           +RFQ+ENPGFDFS A+ +G+
Sbjct: 125 ERFQKENPGFDFSGAEISGN 144

Homo sapiens (taxid: 9606)

>sp|Q5M823|NUDC2_RAT NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2 PE=2 SV=1

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 74/126 (58%), Gaps = 4/126 (3%)

Query: 22  EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWT 81
           +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  +L      D   WT
Sbjct: 20  QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADEGTWT 78

Query: 82  LEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQ 138
           LED  M    +T TKRD    W S +  +   DP+V DQ Q++L L+RFQ+ENPGFDFS 
Sbjct: 79  LEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSG 138

Query: 139 AQFTGS 144
           A+ +G+
Sbjct: 139 AEISGN 144

Rattus norvegicus (taxid: 10116)

>sp|Q9STN7|BOB2_ARATH Protein BOBBER 2 OS=Arabidopsis thaliana GN=BOB2 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 36/157 (22%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
           + W Q L E+ I I +P    S+   C+I+   +++G+KG    ++ E    VK D  FW
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  TLEDDVM-HITLTKRDKGQTWASPIMGQ---------------GQLDP--------YVTD 116
            +ED  M  + LTK+D+ + W   + G+               G LDP         + D
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFD 255

Query: 117 QEQKRL------------MLQRFQEENPGFDFSQAQF 141
           Q QK++            ML++F  +NPG DFS A+F
Sbjct: 256 QRQKQMGLPRSDEIEKKDMLKKFMAQNPGMDFSNAKF 292

Small heat shock protein required for the establishment of auxin gradients and for patterning of the apical domain of the embryo. Involved in the specification of the cotyledon primordia. Also required for normal inflorescence and floral meristem function, normal developmental patterning and thermotolerance. Acts as a molecular chaperone.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV09|BOB1_ARATH Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 36/157 (22%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
           + W Q L E+ + I +P    ++   C+I+   +++G+KG  P ++ EL   VK D  +W
Sbjct: 147 YSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYW 206

Query: 81  TLED-DVMHITLTKRDKGQTWASPIMGQ---------------GQLDP--------YVTD 116
            +ED  V+ I LTK D+ + W   + G+               G LDP         + D
Sbjct: 207 NIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTVEKMMFD 266

Query: 117 QEQKRL------------MLQRFQEENPGFDFSQAQF 141
           Q QK++            +L++F  E+P  DFS A+F
Sbjct: 267 QRQKQMGLPTSEELQKQEILKKFMSEHPEMDFSNAKF 303

Small heat shock protein required for the establishment of auxin gradients and for patterning of the apical domain of the embryo. Involved in the specification of the cotyledon primordia. Also required for normal inflorescence and floral meristem function, normal developmental patterning and thermotolerance. Acts as a molecular chaperone.

Arabidopsis thaliana (taxid: 3702)

>sp|O35685|NUDC_MOUSE Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 40/169 (23%)

Query: 14  LHNGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
           L NG  +  + W QTL E+++ +   +   +  K     IQ +H+ +G+KG PP ++ EL
Sbjct: 164 LGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGEL 223

Query: 70  TCPVKTDSSFWTLED-DVMHITLTKRDKGQTW-----ASPIMGQGQLDPY---------- 113
              VK + S W +ED  V+ + L K +K + W     + P +   +++P           
Sbjct: 224 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSE 283

Query: 114 --------------------VTDQEQKRLMLQRFQEENPGFDFSQAQFT 142
                                +D+++K+ +L++F +++P  DFS+A+F 
Sbjct: 284 TRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332

Plays a role in neurogenesis and neuronal migration. Necessary for correct formation of mitotic spindles and chromosome separation during mitosis.

Mus musculus (taxid: 10090)

>sp|Q9Y266|NUDC_HUMAN Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 40/169 (23%)

Query: 14  LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
           L NG  +  + W QTL E+++ +    N  +  K     IQ +H+ +G+KG P  ++ EL
Sbjct: 163 LGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGEL 222

Query: 70  TCPVKTDSSFWTLED-DVMHITLTKRDKGQTW-----ASPIMGQGQLDPY---------- 113
              VK + S W +ED  V+ + L K +K + W     + P +   +++P           
Sbjct: 223 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSE 282

Query: 114 --------------------VTDQEQKRLMLQRFQEENPGFDFSQAQFT 142
                                +D+++K+ +L++F +++P  DFS+A+F 
Sbjct: 283 TRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 331

Plays a role in neurogenesis and neuronal migration (By similarity). Necessary for correct formation of mitotic spindles and chromosome separation during mitosis. Necessary for cytokinesis and cell proliferation.

Homo sapiens (taxid: 9606)

>sp|Q17QG2|NUDC_BOVIN Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1

 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 40/169 (23%)

Query: 14  LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
           L NG  +  + W QTL E+++ +    N  +  K     IQ +H+ +G+KG P  ++ EL
Sbjct: 164 LGNGADLPSYRWTQTLSELDLAVPFCVNFRLKGKDVVVDIQRRHLRVGLKGQPAIVDGEL 223

Query: 70  TCPVKTDSSFWTLED-DVMHITLTKRDKGQTW-----ASPIMGQGQLDPY---------- 113
              VK + S W +ED  V+ + L K +K + W     + P +   +++P           
Sbjct: 224 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSE 283

Query: 114 --------------------VTDQEQKRLMLQRFQEENPGFDFSQAQFT 142
                                +D+++K+ +L++F +++P  DFS+A+F 
Sbjct: 284 TRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKARFN 332

Plays a role in neurogenesis and neuronal migration. Necessary for correct formation of mitotic spindles and chromosome separation during mitosis.

Bos taurus (taxid: 9913)

>sp|Q63525|NUDC_RAT Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1

 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 40/169 (23%)

Query: 14  LHNGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
           L NG  +  + W QTL E+++ +   +   +  K     IQ +H+ +G+KG  P ++ EL
Sbjct: 164 LGNGADLPNYRWTQTLSELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQAPVIDGEL 223

Query: 70  TCPVKTDSSFWTLED-DVMHITLTKRDKGQTW-----ASPIMGQGQLDPY---------- 113
              VK + S W +ED  V+ + L K +K + W     + P +   +++P           
Sbjct: 224 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSE 283

Query: 114 --------------------VTDQEQKRLMLQRFQEENPGFDFSQAQFT 142
                                +D+++K+ +L++F +++P  DFS+A+F 
Sbjct: 284 TRSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332

Plays a role in neurogenesis and neuronal migration. Necessary for correct formation of mitotic spindles and chromosome separation during mitosis.

Rattus norvegicus (taxid: 10116)

>sp|Q5ZIN1|NUDC_CHICK Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 38/160 (23%)

Query: 21  FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS 78
           + W QTL E+++ I   +   +  K     IQ + + +G+KG+PP ++ EL   VK + S
Sbjct: 182 YRWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGLKGHPPVIDGELFNEVKVEES 241

Query: 79  FWTLED-DVMHITLTKRDKGQTW-----ASPIMGQGQLDPY------------------- 113
            W +ED   + + L K +K + W       P +   +++P                    
Sbjct: 242 SWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMM 301

Query: 114 -----------VTDQEQKRLMLQRFQEENPGFDFSQAQFT 142
                       +D+++K+ +L++F E++P  DFS+A+F 
Sbjct: 302 YDQRQKSMGLPTSDEQKKQDILKKFMEQHPEMDFSKAKFN 341

Plays a role in neurogenesis and neuronal migration. Necessary for correct formation of mitotic spindles and chromosome separation during mitosis. Necessary for cytokinesis and cell proliferation.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
351723663	158	uncharacterized protein LOC100306544 [Gl	1.0	1.0	0.905	8e-83
388511927	158	unknown [Lotus japonicus]	1.0	1.0	0.911	2e-82
351723483	158	uncharacterized protein LOC100499970 [Gl	1.0	1.0	0.905	3e-82
449467493	156	PREDICTED: nudC domain-containing protei	0.987	1.0	0.903	8e-82
224059294	158	predicted protein [Populus trichocarpa]	1.0	1.0	0.867	3e-81
388522565	158	unknown [Lotus japonicus]	1.0	1.0	0.898	6e-81
388501914	158	unknown [Medicago truncatula]	1.0	1.0	0.892	2e-80
255569345	158	NudC domain-containing protein, putative	0.993	0.993	0.872	2e-80
297796809	158	nuclear movement family protein [Arabido	1.0	1.0	0.854	2e-78
15237742	158	nudC domain-containing protein [Arabidop	1.0	1.0	0.848	3e-78

>gi|351723663|ref|NP_001236519.1| uncharacterized protein LOC100306544 [Glycine max] gi|255628837|gb|ACU14763.1| unknown [Glycine max]

 Score =  311 bits (796), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 143/158 (90%), Positives = 151/158 (95%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH F+HNGQ VFEWDQTLDE+NIYI LPPNVHSKQFYCKIQSKH+ELGIKG
Sbjct: 1   MAEKLAPEKRHSFVHNGQKVFEWDQTLDEVNIYITLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+LT PVKTDSSFWTLEDD+MHITL KRDKGQTWASPI+GQGQLDPY TD EQK
Sbjct: 61  NPPYLNHDLTSPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD 158
           RLMLQRFQEENPGFDFSQAQF+G+CPDPRTFMGGIRSD
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIRSD 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511927|gb|AFK44025.1| unknown [Lotus japonicus]

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 144/158 (91%), Positives = 150/158 (94%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH FLHNGQ VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG
Sbjct: 1   MAEKLAPEKRHIFLHNGQKVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+ T PVKTDSSFWTLEDD+MH+TL KRDKGQTWASPI+GQGQLD Y TD EQK
Sbjct: 61  NPPYLNHDFTSPVKTDSSFWTLEDDIMHVTLQKRDKGQTWASPILGQGQLDAYTTDIEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD 158
           RLMLQRFQEENPGFDFSQAQF+G+CPDPRTFMGGIRSD
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIRSD 158

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723483|ref|NP_001234977.1| uncharacterized protein LOC100499970 [Glycine max] gi|255628127|gb|ACU14408.1| unknown [Glycine max]

 Score =  308 bits (790), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 143/158 (90%), Positives = 150/158 (94%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH F+HNGQ VFEWDQTLDE+NIYI LPPNVHSKQFYCKIQSKH+ELGIKG
Sbjct: 1   MAEKLAPEKRHGFVHNGQKVFEWDQTLDEVNIYIALPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+LT PVKTDSSFWTLEDD+MHITL KRDKGQTWASPI GQGQLDPY TD EQK
Sbjct: 61  NPPYLNHDLTSPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPISGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD 158
           RLMLQRFQEENPGFDFSQAQF+G+CPDPRTFMGGIRSD
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIRSD 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467493|ref|XP_004151457.1| PREDICTED: nudC domain-containing protein 2-like [Cucumis sativus]

 Score =  307 bits (787), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 141/156 (90%), Positives = 150/156 (96%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH FLHNGQ VFEWDQTL+E+NIYINLPPNV+SKQFYCKIQS+H+ELGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNHELTCPVKTDSSFWTLEDD+MHITL KRDKGQTWASPI GQGQLDPY +D EQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIR 156
           RLMLQRFQEENPGFDFSQAQF+G+CPDPRTFMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059294|ref|XP_002299811.1| predicted protein [Populus trichocarpa] gi|222847069|gb|EEE84616.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (783), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 137/158 (86%), Positives = 153/158 (96%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH F+H+G+T+FEWDQTL+E+NIYINLPPNVHSKQFYCKIQSKH+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFVHDGKTIFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSKHVEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+LTCPVKTDSSFWTLEDD+MHIT+ KRDKGQTWASPI+G+GQLD Y +D EQK
Sbjct: 61  NPPYLNHDLTCPVKTDSSFWTLEDDIMHITMQKRDKGQTWASPILGEGQLDAYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD 158
           RLMLQRFQEENPGFDFSQAQFTG+CPDPRTFMGGIR+D
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFTGNCPDPRTFMGGIRND 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522565|gb|AFK49344.1| unknown [Lotus japonicus]

 Score =  305 bits (780), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 142/158 (89%), Positives = 148/158 (93%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH FLHNGQ VFEWDQTLDEINIY NLPPNVHSKQFY KIQSKHIELGIKG
Sbjct: 1   MAEKLAPEKRHIFLHNGQKVFEWDQTLDEINIYTNLPPNVHSKQFYYKIQSKHIELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+ T PVKTDSSFWTLEDD+MH+TL KRDKGQTWASPI+GQGQLD Y TD EQK
Sbjct: 61  NPPYLNHDFTSPVKTDSSFWTLEDDIMHVTLQKRDKGQTWASPILGQGQLDAYTTDIEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD 158
           RLMLQRFQEENPGFDFSQAQF+G+CPDPRTFMGGIRSD
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIRSD 158

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501914|gb|AFK39023.1| unknown [Medicago truncatula]

 Score =  302 bits (774), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/158 (89%), Positives = 148/158 (93%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH FLHNGQ VFEWDQTLDE+NIYINLPPNVHSK FYC IQSKHIELGIKG
Sbjct: 1   MAEKLAPEKRHIFLHNGQKVFEWDQTLDEVNIYINLPPNVHSKLFYCTIQSKHIELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPP+LNH+LT PVKTDSSFWTLEDD+MHITL KRDKGQTW SPI+GQGQLD Y TD EQK
Sbjct: 61  NPPFLNHDLTSPVKTDSSFWTLEDDIMHITLNKRDKGQTWPSPILGQGQLDAYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD 158
           RLMLQRFQEENPGFDFSQAQF+G+CPDPRTFMGGIRSD
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIRSD 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569345|ref|XP_002525640.1| NudC domain-containing protein, putative [Ricinus communis] gi|223535076|gb|EEF36758.1| NudC domain-containing protein, putative [Ricinus communis]

 Score =  302 bits (774), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 137/157 (87%), Positives = 150/157 (95%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH F+HNGQTVFEWDQTLDE+N+YINLPPNVHSKQFYCKIQSKH+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFVHNGQTVFEWDQTLDEVNMYINLPPNVHSKQFYCKIQSKHLEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+L+CPVKTDSSFWTLED +MHITL KRDKG TW+SP+ GQGQLDPY TD EQK
Sbjct: 61  NPPYLNHDLSCPVKTDSSFWTLEDGIMHITLQKRDKGLTWSSPVFGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRS 157
           RLMLQRFQEENPGFDFSQAQFTG+CPDPRTF+GGIR+
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFTGNCPDPRTFLGGIRT 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796809|ref|XP_002866289.1| nuclear movement family protein [Arabidopsis lyrata subsp. lyrata] gi|297312124|gb|EFH42548.1| nuclear movement family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 135/158 (85%), Positives = 148/158 (93%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH F+HNGQ VFEWDQTL+E+N+YI LPPNVH K F+CKIQSKHIE+GIKG
Sbjct: 1   MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNLYITLPPNVHLKAFHCKIQSKHIEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+L+ PVKTD SFWTLEDD+MHITL KR+KGQTWASPI+GQGQLDPY TD EQK
Sbjct: 61  NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD 158
           RLMLQRFQEENPGFDFSQAQFTG+CPDPR+FMGGIRSD
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFTGNCPDPRSFMGGIRSD 158

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237742|ref|NP_200682.1| nudC domain-containing protein [Arabidopsis thaliana] gi|18389274|gb|AAL67080.1| unknown protein [Arabidopsis thaliana] gi|21436159|gb|AAM51326.1| unknown protein [Arabidopsis thaliana] gi|332009710|gb|AED97093.1| nudC domain-containing protein [Arabidopsis thaliana]

 Score =  295 bits (756), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 134/158 (84%), Positives = 148/158 (93%)

Query: 1   MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
           MAEKLAPEKRH F+HNGQ VFEWDQTL+E+N+YI LPPNVH K F+CKIQSKHIE+GIKG
Sbjct: 1   MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
           NPPYLNH+L+ PVKTD SFWTLEDD+MHITL KR+KGQTWASPI+GQGQLDPY TD EQK
Sbjct: 61  NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD 158
           RLMLQRFQEENPGFDFSQAQF+G+CPDPR+FMGGIRSD
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRSD 158

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2178888	158	AT5G58740 "AT5G58740" [Arabido	1.0	1.0	0.848	1e-75
UNIPROTKB|E2RSY6	192	NUDCD2 "Uncharacterized protei	0.873	0.718	0.391	5.5e-22
UNIPROTKB|Q8WVJ2	157	NUDCD2 "NudC domain-containing	0.873	0.878	0.391	5.5e-22
UNIPROTKB|F1RR73	157	NUDCD2 "Uncharacterized protei	0.873	0.878	0.391	5.5e-22
MGI|MGI:1277103	157	Nudcd2 "NudC domain containing	0.873	0.878	0.391	5.5e-22
ZFIN|ZDB-GENE-040801-49	157	nudcd2 "NudC domain containing	0.765	0.770	0.424	5.5e-22
UNIPROTKB|Q32KU8	157	NUDCD2 "NudC domain containing	0.873	0.878	0.391	9e-22
RGD|1307203	157	Nudcd2 "NudC domain containing	0.772	0.777	0.404	1.1e-21
UNIPROTKB|E1BUG9	157	NUDCD2 "Uncharacterized protei	0.765	0.770	0.408	8e-21
TAIR|locus:2137345	293	AT4G27890 "AT4G27890" [Arabido	0.645	0.348	0.300	4.7e-18

TAIR|locus:2178888 AT5G58740 "AT5G58740" [Arabidopsis thaliana (taxid:3702)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 134/158 (84%), Positives = 148/158 (93%)

Query:     1 MAEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG 60
             MAEKLAPEKRH F+HNGQ VFEWDQTL+E+N+YI LPPNVH K F+CKIQSKHIE+GIKG
Sbjct:     1 MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query:    61 NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQK 120
             NPPYLNH+L+ PVKTD SFWTLEDD+MHITL KR+KGQTWASPI+GQGQLDPY TD EQK
Sbjct:    61 NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query:   121 RLMLQRFQEENPGFDFSQAQFTGSCPDPRTFMGGIRSD 158
             RLMLQRFQEENPGFDFSQAQF+G+CPDPR+FMGGIRSD
Sbjct:   121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRSD 158

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2RSY6 NUDCD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 56/143 (39%), Positives = 81/143 (56%)

Query:     6 AP-EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPY 64
             AP E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    
Sbjct:    38 APFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-I 96

Query:    65 LNHELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKR 121
             L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++
Sbjct:    97 LKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRK 156

Query:   122 LMLQRFQEENPGFDFSQAQFTGS 144
             L L+RFQ+ENPGFDFS A+ +G+
Sbjct:   157 LTLERFQKENPGFDFSGAEISGN 179

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q8WVJ2 NUDCD2 "NudC domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 56/143 (39%), Positives = 81/143 (56%)

Query:     6 AP-EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPY 64
             AP E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    
Sbjct:     3 APFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE-I 61

Query:    65 LNHELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKR 121
             L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++
Sbjct:    62 LKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRK 121

Query:   122 LMLQRFQEENPGFDFSQAQFTGS 144
             L L+RFQ+ENPGFDFS A+ +G+
Sbjct:   122 LTLERFQKENPGFDFSGAEISGN 144

GO:0005737 "cytoplasm" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005622 "intracellular" evidence=IDA

UNIPROTKB|F1RR73 NUDCD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 56/143 (39%), Positives = 81/143 (56%)

Query:     6 AP-EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPY 64
             AP E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    
Sbjct:     3 APFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-I 61

Query:    65 LNHELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKR 121
             L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++
Sbjct:    62 LKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRK 121

Query:   122 LMLQRFQEENPGFDFSQAQFTGS 144
             L L+RFQ+ENPGFDFS A+ +G+
Sbjct:   122 LTLERFQKENPGFDFSGAEISGN 144

GO:0005622 "intracellular" evidence=IEA

MGI|MGI:1277103 Nudcd2 "NudC domain containing 2" [Mus musculus (taxid:10090)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 56/143 (39%), Positives = 81/143 (56%)

Query:     6 AP-EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPY 64
             AP E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    
Sbjct:     3 APFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-I 61

Query:    65 LNHELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKR 121
             L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++
Sbjct:    62 LKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRK 121

Query:   122 LMLQRFQEENPGFDFSQAQFTGS 144
             L L+RFQ+ENPGFDFS A+ +G+
Sbjct:   122 LTLERFQKENPGFDFSGAEISGN 144

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040801-49 nudcd2 "NudC domain containing 2" [Danio rerio (taxid:7955)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 53/125 (42%), Positives = 76/125 (60%)

Query:    23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTL 82
             W QT++E+ I +N+PP   +K+  C I SK IEL +K    +   +L      D + WTL
Sbjct:    21 WYQTMEEVYIEVNVPPGTSAKEIKCNIGSKQIELRVKDQQIFKG-KLFGSTVCDEATWTL 79

Query:    83 EDD-VMHITL--TKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQA 139
             ED  ++ I L  T R+ G  W S + G+   DP+V DQ Q++L L+RFQ ENPGFDFS A
Sbjct:    80 EDKKLIRIVLMKTNREAGNCWQSLLEGEFMADPWVQDQMQRKLTLERFQRENPGFDFSGA 139

Query:   140 QFTGS 144
             + +G+
Sbjct:   140 EISGN 144

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q32KU8 NUDCD2 "NudC domain containing 2" [Bos taurus (taxid:9913)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 56/143 (39%), Positives = 80/143 (55%)

Query:     6 AP-EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPY 64
             AP E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    
Sbjct:     3 APFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-I 61

Query:    65 LNHELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKR 121
             L  +L      D   WTLED  M    +T TKRD    W S +      DP+V DQ Q++
Sbjct:    62 LKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESDYAADPWVQDQMQRK 121

Query:   122 LMLQRFQEENPGFDFSQAQFTGS 144
             L L+RFQ+ENPGFDFS A+ +G+
Sbjct:   122 LTLERFQKENPGFDFSGAEISGN 144

GO:0005622 "intracellular" evidence=IEA

RGD|1307203 Nudcd2 "NudC domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 51/126 (40%), Positives = 74/126 (58%)

Query:    22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWT 81
             +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  +L      D   WT
Sbjct:    20 QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADEGTWT 78

Query:    82 LEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQ 138
             LED  M    +T TKRD    W S +  +   DP+V DQ Q++L L+RFQ+ENPGFDFS 
Sbjct:    79 LEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSG 138

Query:   139 AQFTGS 144
             A+ +G+
Sbjct:   139 AEISGN 144

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB|E1BUG9 NUDCD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 51/125 (40%), Positives = 72/125 (57%)

Query:    23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTL 82
             W QTL+E+ I + +PP   +K   C +QS+ + L + G    L  +L      D   WTL
Sbjct:    21 WYQTLEEVFIEVQVPPGTRAKDVCCSLQSRRVALSVCGRE-VLQGKLFDSTIADEGTWTL 79

Query:    83 ED-DVMHITL--TKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQA 139
             ED  ++ I L  T RD G  W S +  +   DP+V DQ Q++L L+RFQ ENPGFDFS A
Sbjct:    80 EDRKLIRIVLMKTNRDAGNCWTSLLENEYAADPWVQDQMQRKLTLERFQRENPGFDFSGA 139

Query:   140 QFTGS 144
             + +G+
Sbjct:   140 EISGN 144

GO:0005622 "intracellular" evidence=IEA

TAIR|locus:2137345 AT4G27890 "AT4G27890" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
 Identities = 31/103 (30%), Positives = 54/103 (52%)

Query:    21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
             + W Q L E+ I I +P    S+   C+I+   +++G+KG    ++ E    VK D  FW
Sbjct:   136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query:    81 TLEDDVM-HITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
              +ED  M  + LTK+D+ + W   + G+ ++D    + E  +L
Sbjct:   196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKL 238

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CQ48	NUDC2_MOUSE	No assigned EC number	0.3857	0.8607	0.8662	yes	no
Q8WVJ2	NUDC2_HUMAN	No assigned EC number	0.3857	0.8607	0.8662	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
cd06467	85	cd06467, p23_NUDC_like, p23_like domain of NUD (nu	2e-35
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	4e-22
pfam04969	78	pfam04969, CS, CS domain	6e-22
cd06494	93	cd06494, p23_NUDCD2_like, p23-like NUD (nuclear di	8e-17
cd06492	87	cd06492, p23_mNUDC_like, p23-like NUD (nuclear dis	1e-13
cd06493	85	cd06493, p23_NUDCD1_like, p23_NUDCD1: p23-like NUD	4e-11
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	1e-08

>gnl|CDD|107224 cd06467, p23_NUDC_like, p23_like domain of NUD (nuclear distribution) C and similar proteins

 Score =  118 bits (297), Expect = 2e-35
 Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
           + W QTLDE+ + I LP    SK    +I  KH+++G+KG  P L+ EL   VK D S W
Sbjct: 1   YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTW 60

Query: 81  TLED-DVMHITLTKRDKGQTWASPI 104
           TLED  ++ ITL KR++G+ W S +
Sbjct: 61  TLEDGKLLEITLEKRNEGEWWPSLV 85

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation. This group also includes the human broadly immunogenic tumor associated antigen, CML66, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of CML66 is limited to testis and heart. Length = 85

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 83.9 bits (208), Expect = 4e-22
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 23  WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSF 79
           W QTLDE+ I I L  +V  K    +   K + + +K   G    L  EL  P+  + S 
Sbjct: 1   WYQTLDEVTITIPLK-DVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESK 59

Query: 80  WTLEDDVMHITLTKRDKGQTWAS 102
           WT+ED  + ITL K++ G+ W  
Sbjct: 60  WTVEDRKIEITLKKKEPGEWWPR 82

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|218355 pfam04969, CS, CS domain

 Score = 83.4 bits (207), Expect = 6e-22
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDS 77
          ++W QTLDE+ I I L      K    +I+ + +++ IKG       L+ EL  P+  + 
Sbjct: 3  YDWYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGGKEYLLDGELFGPIDPEE 62

Query: 78 SFWTLEDDVMHITLTK 93
          S W +ED  + ITL K
Sbjct: 63 SSWKIEDTKVEITLKK 78

The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans but are found in separate proteins in plants; this is thought to be indicative of an interaction between CS and CHORD. It has been suggested that the CS domain is a binding module for HSP90, implying that CS domain-containing proteins are involved in recruiting heat shock proteins to multiprotein assemblies. Length = 78

>gnl|CDD|107243 cd06494, p23_NUDCD2_like, p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

 Score = 70.6 bits (173), Expect = 8e-17
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 23  WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTL 82
           W QT+DE+ I +N+PP   +K   CK+ S+ I L +KG    L  +L   V  D   WTL
Sbjct: 10  WYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ-EVLKGKLFDSVVADECTWTL 68

Query: 83  ED-DVMHITLTK--RDKGQTWAS 102
           ED  ++ I LTK  RD G  W S
Sbjct: 69  EDRKLIRIVLTKSNRDAGNCWKS 91

Little is known about the function of the proteins in this subgroup. Length = 93

>gnl|CDD|107241 cd06492, p23_mNUDC_like, p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

 Score = 62.4 bits (152), Expect = 1e-13
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 21  FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS 78
           + W QTL E+ + +   +   +  K     IQ KH+++G+KG PP ++ EL   VK + S
Sbjct: 1   YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEES 60

Query: 79  FWTLED-DVMHITLTKRDKGQTWA 101
            W +ED  V+ + L K +K + W+
Sbjct: 61  SWLIEDGKVVTVNLEKINKMEWWS 84

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation. Length = 87

>gnl|CDD|107242 cd06493, p23_NUDCD1_like, p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

 Score = 55.6 bits (134), Expect = 4e-11
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
           + W QT +++ + I LP +   +    K    HI + +K   P L  +L   +  +SS W
Sbjct: 1   YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTW 60

Query: 81  TL-EDDVMHITLTKRDKGQTWA 101
            + E+  + ++L K+D+G TW 
Sbjct: 61  IIKENKSLEVSLIKKDEGPTWP 82

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart. Length = 85

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK----------GNPPYLNHELTCP 72
          W QT DE+ + ++LP  V  +    +++   + +  K                + EL   
Sbjct: 1  WYQTDDEVVVTVDLP-GVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPED 59

Query: 73 VKTDSSFWTLEDDVMHITLTK 93
          V  + S  +LE+ V+ ITL K
Sbjct: 60 VDPEKSKASLENGVLEITLPK 80

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
KOG2265	179	consensus Nuclear distribution protein NUDC [Signa	100.0
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	99.96
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	99.94
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	99.93
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	99.93
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	99.9
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	99.86
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	99.79
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	99.78
cd06463	84	p23_like Proteins containing this p23_like domain	99.76
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	99.74
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	99.74
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.73
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	99.7
cd06488	87	p23_melusin_like p23_like domain similar to the C-	99.69
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.68
KOG1309	196	consensus Suppressor of G2 allele of skp1 [Signal	99.67
KOG4379	596	consensus Uncharacterized conserved protein (tumor	99.54
KOG3158	180	consensus HSP90 co-chaperone p23 [Posttranslationa	99.48
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	99.42
cd00298	80	ACD_sHsps_p23-like This domain family includes the	99.13
KOG3260	224	consensus Calcyclin-binding protein CacyBP [Signal	98.74
KOG1667	320	consensus Zn2+-binding protein Melusin/RAR1, conta	98.64
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	98.43
COG0071	146	IbpA Molecular chaperone (small heat shock protein	98.06
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	97.79
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	97.62
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	97.49
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	97.48
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	97.02
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	96.99
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	96.98
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	96.9
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	96.85
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	96.82
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	96.8
PRK10743	137	heat shock protein IbpA; Provisional	96.79
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	96.52
PRK11597	142	heat shock chaperone IbpB; Provisional	96.5
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	96.15
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	95.77
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	94.84
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	94.57
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	91.13
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	87.6

>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-35  Score=222.07  Aligned_cols=151  Identities=34%  Similarity=0.510  Sum_probs=121.3

Q ss_pred             CCCCCcccccccccCCCCcEEEEeeCCEEEEEEEcCCCC-CCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCcee
Q 031527            2 AEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW   80 (158)
Q Consensus         2 ~~~~~~~~~~~~~~ng~~~Y~W~Qt~~~V~I~i~lp~~~-~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w   80 (158)
                      .+++.++.|+.++.++.+.|+|+||..+|.|.|+||+++ ++++|.|.|..++|+|+++|++++++|+|+++|++++|+|
T Consensus         2 ~~~~~eE~p~~~ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG~L~~~vk~des~W   81 (179)
T KOG2265|consen    2 DEKPKEEKPNSGNGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDGELSHSVKVDESTW   81 (179)
T ss_pred             CccccccCCcccCCccccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceecCccccccccccceE
Confidence            356666778888888899999999999999999999999 9999999999999999999988899999999999999999


Q ss_pred             EeeCCe-EEEEEEecCCCCCCCCCcCCCCCCCCCccHH-H-HHHHHHHHHHHhCCCCCCCCCCCCCC--CCCccccc
Q 031527           81 TLEDDV-MHITLTKRDKGQTWASPIMGQGQLDPYVTDQ-E-QKRLMLQRFQEENPGFDFSQAQFTGS--CPDPRTFM  152 (158)
Q Consensus        81 ~i~~~~-l~i~L~K~~~~~~W~~L~~~~~~id~~~~de-~-~~~~~l~~~~~~~~~~df~~~~~~g~--~~dp~~~~  152 (158)
                      +|++++ |.+.|+|.+.+.||.+|++|+++||+...+. . +..++.+++|+..+.|+|+++.+.++  .+|+..+|
T Consensus        82 tiEd~k~i~i~l~K~~~~eWW~~ll~gep~ID~~ki~~e~skl~dldeEtra~vekmmfdq~qk~~~~p~sde~~~~  158 (179)
T KOG2265|consen   82 TIEDGKMIVILLKKSNKMEWWDSLLEGEPEIDTKKIEPEESKLSDLDEETRATVEKMMFDQRQKSMGLPTSDELKKH  158 (179)
T ss_pred             EecCCEEEEEEeeccchHHHHHHHHcCCCCCCccccChhhhhhhhccHHHHHhhhccchhHHHhhcCCCCCchhhHH
Confidence            999986 6777888776799999999999999754333 1 23444455555555555555555555  44444443

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=99.96  E-value=2.4e-28  Score=174.00  Aligned_cols=94  Identities=21%  Similarity=0.531  Sum_probs=86.4

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCC-CCCCceEEEeeccEEEEEecC---CCceecCCCCCCcccCCceeEeeCCe-EEEEEE
Q 031527           18 QTVFEWDQTLDEINIYINLPPN-VHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDV-MHITLT   92 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~-~~~kdv~V~i~~~~l~v~v~g---~~~~l~g~L~~~I~~deS~w~i~~~~-l~i~L~   92 (158)
                      .+.|+|+||.++|+|+|+||++ +++||+.|+|++++|+|++++   +.++|+|+||++|++|+|+|+|++++ |+|+|.
T Consensus         4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~   83 (102)
T cd06495           4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLS   83 (102)
T ss_pred             CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEE
Confidence            4789999999999999999998 579999999999999999974   34799999999999999999999975 899999


Q ss_pred             ecCCCCCCCCCcCCCCCCCC
Q 031527           93 KRDKGQTWASPIMGQGQLDP  112 (158)
Q Consensus        93 K~~~~~~W~~L~~~~~~id~  112 (158)
                      |... .||++|++|+++||.
T Consensus        84 K~~~-~wW~~v~~g~~~iD~  102 (102)
T cd06495          84 KCSE-VWWNAVLKGEEEIDI  102 (102)
T ss_pred             ECCC-cccchhhCCCCcCCC
Confidence            9975 799999999999984

Little is known about the function of the proteins in this subgroup.

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=99.94  E-value=3.6e-26  Score=158.50  Aligned_cols=84  Identities=33%  Similarity=0.682  Sum_probs=79.4

Q ss_pred             EEEEeeCCEEEEEEEcCCC--CCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeCC-eEEEEEEecCCC
Q 031527           21 FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHITLTKRDKG   97 (158)
Q Consensus        21 Y~W~Qt~~~V~I~i~lp~~--~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~-~l~i~L~K~~~~   97 (158)
                      |+|+||.++|+|+|+||.+  ++++|++|+|++++|+|+++|++++++|+||++|++|+|+|+++++ .|+|+|.|++++
T Consensus         1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~~~~   80 (87)
T cd06492           1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKINKM   80 (87)
T ss_pred             CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccccEEEEeCCCEEEEEEEECCCC
Confidence            8999999999999999887  8999999999999999999997789999999999999999999996 699999999887


Q ss_pred             CCCCCCc
Q 031527           98 QTWASPI  104 (158)
Q Consensus        98 ~~W~~L~  104 (158)
                      .||++|+
T Consensus        81 ~wW~~l~   87 (87)
T cd06492          81 EWWSRLV   87 (87)
T ss_pred             ccccccC
Confidence            8999985

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=99.93  E-value=1.2e-25  Score=157.67  Aligned_cols=86  Identities=38%  Similarity=0.657  Sum_probs=80.5

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeCCe-EEEEEEecCC
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDV-MHITLTKRDK   96 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~~-l~i~L~K~~~   96 (158)
                      ++.|.|+||.++|+|+|+||++++++|+.|.|++++|+|+++|+ .+|+|+||++|++|+|+|++++++ |+|+|.|+++
T Consensus         5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~-~~l~G~L~~~I~~destWtled~k~l~I~L~K~~~   83 (93)
T cd06494           5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ-EVLKGKLFDSVVADECTWTLEDRKLIRIVLTKSNR   83 (93)
T ss_pred             CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE-EEEcCcccCccCcccCEEEEECCcEEEEEEEeCCC
Confidence            57899999999999999999999999999999999999999986 599999999999999999999998 6999999974


Q ss_pred             --CCCCCCCc
Q 031527           97 --GQTWASPI  104 (158)
Q Consensus        97 --~~~W~~L~  104 (158)
                        |.+|++|+
T Consensus        84 ~~~~~W~sl~   93 (93)
T cd06494          84 DAGNCWKSLL   93 (93)
T ss_pred             CCCccccccC
Confidence              36999985

Little is known about the function of the proteins in this subgroup.

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=99.93  E-value=3.4e-25  Score=152.52  Aligned_cols=84  Identities=26%  Similarity=0.648  Sum_probs=78.8

Q ss_pred             EEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeCC-eEEEEEEecCCCCC
Q 031527           21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHITLTKRDKGQT   99 (158)
Q Consensus        21 Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~-~l~i~L~K~~~~~~   99 (158)
                      |.|+||.++|+|+|++|++++++|++|+|++++|+|.+++.+++++|+||+.|++++|+|+++++ +|+|+|.|++++.+
T Consensus         1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~~~~   80 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDEGPT   80 (85)
T ss_pred             CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCCCcc
Confidence            89999999999999999999999999999999999999865578999999999999999999876 69999999998789


Q ss_pred             CCCCc
Q 031527          100 WASPI  104 (158)
Q Consensus       100 W~~L~  104 (158)
                      |++|+
T Consensus        81 W~~L~   85 (85)
T cd06493          81 WPELV   85 (85)
T ss_pred             ccccC
Confidence            99985

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=99.90  E-value=6.5e-23  Score=140.06  Aligned_cols=84  Identities=45%  Similarity=0.830  Sum_probs=79.5

Q ss_pred             EEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeC-CeEEEEEEecCCCCC
Q 031527           21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED-DVMHITLTKRDKGQT   99 (158)
Q Consensus        21 Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~-~~l~i~L~K~~~~~~   99 (158)
                      |.|+||.++|+|+|++|++++++|+.|+|++++|+|++++..++++|.||++|++++|+|++++ ++|+|+|.|++++.+
T Consensus         1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~~~~   80 (85)
T cd06467           1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNEGEW   80 (85)
T ss_pred             CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCCCcc
Confidence            8999999999999999999999999999999999999986568899999999999999999999 899999999987679


Q ss_pred             CCCCc
Q 031527          100 WASPI  104 (158)
Q Consensus       100 W~~L~  104 (158)
                      |++|+
T Consensus        81 W~~L~   85 (85)
T cd06467          81 WPSLV   85 (85)
T ss_pred             ccccC
Confidence            99986

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=99.86  E-value=4.4e-21  Score=137.29  Aligned_cols=91  Identities=20%  Similarity=0.353  Sum_probs=80.7

Q ss_pred             CcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC----CceecCCCCCCcccCCceeEeeCCeEEEEEEec
Q 031527           19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN----PPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (158)
Q Consensus        19 ~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~----~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~   94 (158)
                      |.|.|+||.++|+|+|++|.   .+++.|.|++++|+|++.+.    .+.++++||++|++++|+|++.+++|+|+|+|+
T Consensus         1 p~~~W~Qt~~~V~i~i~~~~---~~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~   77 (108)
T cd06465           1 PPVLWAQRSDVVYLTIELPD---AKDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKK   77 (108)
T ss_pred             CceeeeECCCEEEEEEEeCC---CCCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEEC
Confidence            57999999999999999984   38999999999999988642    257899999999999999999999999999999


Q ss_pred             CCCCCCCCCcCCCCCCCC
Q 031527           95 DKGQTWASPIMGQGQLDP  112 (158)
Q Consensus        95 ~~~~~W~~L~~~~~~id~  112 (158)
                      +.+.+|++|.+++++++.
T Consensus        78 ~~~~~W~~L~~~~~k~~~   95 (108)
T cd06465          78 EAGEYWPRLTKEKGKLPW   95 (108)
T ss_pred             CCCCCCcccccCCCCCCc
Confidence            833699999999987763

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=99.79  E-value=7.8e-19  Score=121.77  Aligned_cols=84  Identities=21%  Similarity=0.413  Sum_probs=72.8

Q ss_pred             cEEEEeeCCEEEEEEEcCCCCC--CCceEEEeeccEEEEEecC---CCc-eecCCCCCCcccCCceeEeeCCeEEEEEEe
Q 031527           20 VFEWDQTLDEINIYINLPPNVH--SKQFYCKIQSKHIELGIKG---NPP-YLNHELTCPVKTDSSFWTLEDDVMHITLTK   93 (158)
Q Consensus        20 ~Y~W~Qt~~~V~I~i~lp~~~~--~kdv~V~i~~~~l~v~v~g---~~~-~l~g~L~~~I~~deS~w~i~~~~l~i~L~K   93 (158)
                      +|.|+||.++|+|+|.+|....  ++++.|.|++++|+|.+.+   .++ +..+.||++|++++|+|++.+++|+|+|+|
T Consensus         3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~K   82 (92)
T cd06468           3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLAK   82 (92)
T ss_pred             eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEEe
Confidence            6999999999999999985533  5999999999999998854   222 344579999999999999999999999999


Q ss_pred             cCCCCCCCCCc
Q 031527           94 RDKGQTWASPI  104 (158)
Q Consensus        94 ~~~~~~W~~L~  104 (158)
                      +++ .+|++|.
T Consensus        83 ~~~-~~W~~L~   92 (92)
T cd06468          83 KKE-KKWESLT   92 (92)
T ss_pred             CCC-CccCccC
Confidence            987 7999984

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=99.78  E-value=2.2e-18  Score=114.81  Aligned_cols=75  Identities=28%  Similarity=0.534  Sum_probs=66.4

Q ss_pred             CcEEEEeeCCEEEEEEEc-CCCCCCCceEEEeeccEEEEEec-C--CCceecCCCCCCcccCCceeEeeCCeEEEEEEe
Q 031527           19 TVFEWDQTLDEINIYINL-PPNVHSKQFYCKIQSKHIELGIK-G--NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTK   93 (158)
Q Consensus        19 ~~Y~W~Qt~~~V~I~i~l-p~~~~~kdv~V~i~~~~l~v~v~-g--~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K   93 (158)
                      |+|.|+||.++|+|+|++ +..++++|+.|.|++++|+|.++ +  ..++++++||++|++++|+|++.+++|+|+|+|
T Consensus         1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K   79 (79)
T PF04969_consen    1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK   79 (79)
T ss_dssp             SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred             CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence            689999999999999999 54578999999999999999986 2  346789999999999999999999999999998

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=99.76  E-value=4.6e-18  Score=114.02  Aligned_cols=81  Identities=35%  Similarity=0.581  Sum_probs=74.0

Q ss_pred             EEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC---CCceecCCCCCCcccCCceeEeeCCeEEEEEEecCCCCC
Q 031527           23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQT   99 (158)
Q Consensus        23 W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g---~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~~~~~   99 (158)
                      |+|+.++|+|+|.+|.. .++++.|.+++++|+|++.+   ..+.+++.|+++|++++|+|++.++.|+|+|.|+.++.+
T Consensus         1 W~Q~~~~v~i~v~~~~~-~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~   79 (84)
T cd06463           1 WYQTLDEVTITIPLKDV-TKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEW   79 (84)
T ss_pred             CcccccEEEEEEEcCCC-CccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCC
Confidence            99999999999999954 48999999999999999874   456799999999999999999999999999999988689


Q ss_pred             CCCCc
Q 031527          100 WASPI  104 (158)
Q Consensus       100 W~~L~  104 (158)
                      |++|+
T Consensus        80 W~~l~   84 (84)
T cd06463          80 WPRLE   84 (84)
T ss_pred             CcccC
Confidence            99984

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=99.74  E-value=7.8e-18  Score=114.33  Aligned_cols=80  Identities=23%  Similarity=0.372  Sum_probs=73.0

Q ss_pred             EEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCceecCCCCCCcccCCceeEeeCCeEEEEEEecCCCC
Q 031527           22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQ   98 (158)
Q Consensus        22 ~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~~~~   98 (158)
                      .|+||.++|+|+|.+| ++.++++.|.+++++|.|.+.   +..+.++.+||++|++++|+|++.+++|+|+|+|+.+ .
T Consensus         1 dW~Qt~~~v~i~v~~~-~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~-~   78 (84)
T cd06466           1 DWYQTDTSVTVTIYAK-NVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEP-G   78 (84)
T ss_pred             CccccCCEEEEEEEEC-CCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCC-C
Confidence            4999999999999987 788999999999999999875   2346789999999999999999999999999999987 6


Q ss_pred             CCCCC
Q 031527           99 TWASP  103 (158)
Q Consensus        99 ~W~~L  103 (158)
                      +|++|
T Consensus        79 ~W~~L   83 (84)
T cd06466          79 SWPSL   83 (84)
T ss_pred             CCccC
Confidence            99998

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=99.74  E-value=1.8e-17  Score=118.86  Aligned_cols=88  Identities=17%  Similarity=0.185  Sum_probs=78.5

Q ss_pred             CcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCceecCCCCCCcccCCceeEeeCCeEEEEEEecC
Q 031527           19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRD   95 (158)
Q Consensus        19 ~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~   95 (158)
                      |.+.|+|+.+.|+|+|.++.   ++|++|+|++++|+|...   |..+.++.+||++|++++|++++.+++|+|.|+|++
T Consensus         2 p~v~WaQr~~~V~ltI~v~d---~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~   78 (106)
T cd00237           2 AKTLWYDRRDYVFIEFCVED---SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGK   78 (106)
T ss_pred             CcceeeECCCEEEEEEEeCC---CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCC
Confidence            67999999999999999984   789999999999999864   344568889999999999999999999999999998


Q ss_pred             CCCCCCCCcCCCCC
Q 031527           96 KGQTWASPIMGQGQ  109 (158)
Q Consensus        96 ~~~~W~~L~~~~~~  109 (158)
                      ++.+|++|++...+
T Consensus        79 ~~~~WprL~k~~~k   92 (106)
T cd00237          79 EGVAWPRLTKEKAK   92 (106)
T ss_pred             CCCCCchhhcCCCC
Confidence            66689999997654

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.73  E-value=1.6e-17  Score=111.55  Aligned_cols=78  Identities=19%  Similarity=0.396  Sum_probs=71.4

Q ss_pred             EEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeCCeEEEEEEecCCCCCCCC
Q 031527           23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWAS  102 (158)
Q Consensus        23 W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~~~~~W~~  102 (158)
                      |+||.++|+|+|.+| +++++++.|.+++++|+|..  ..+.+.++|+++|++++|+|++++++|+|+|.|+++ .+|++
T Consensus         1 W~Qt~~~v~i~i~~p-~v~~~~v~v~~~~~~l~i~~--~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~-~~W~~   76 (78)
T cd06469           1 WSQTDEDVKISVPLK-GVKTSKVDIFCSDLYLKVNF--PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEP-GIWEA   76 (78)
T ss_pred             CcccCCEEEEEEEeC-CCccccceEEEecCEEEEcC--CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCC-Ccccc
Confidence            999999999999999 68999999999999888766  346789999999999999999999999999999987 69999


Q ss_pred             Cc
Q 031527          103 PI  104 (158)
Q Consensus       103 L~  104 (158)
                      |.
T Consensus        77 L~   78 (78)
T cd06469          77 LC   78 (78)
T ss_pred             cC
Confidence            83

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=99.70  E-value=6.7e-17  Score=110.55  Aligned_cols=81  Identities=21%  Similarity=0.351  Sum_probs=72.6

Q ss_pred             EEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC---CCceecCCCCCCcccCCceeEeeCCeEEEEEEecCCCC
Q 031527           22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQ   98 (158)
Q Consensus        22 ~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g---~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~~~~   98 (158)
                      .|+|+.+.|+|+|.++ ++..+++.|+|++++|+|++++   ..+.++.+||++|+|++|+|++.+++|+|.|+|+++ .
T Consensus         1 dW~Q~~~~V~iti~~k-~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-~   78 (84)
T cd06489           1 DWYQTESQVVITILIK-NVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEA-I   78 (84)
T ss_pred             CccccCCEEEEEEEEC-CCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCC-C
Confidence            4999999999999875 7888999999999999998753   346789999999999999999999999999999975 6


Q ss_pred             CCCCCc
Q 031527           99 TWASPI  104 (158)
Q Consensus        99 ~W~~L~  104 (158)
                      +|++|.
T Consensus        79 ~W~~Le   84 (84)
T cd06489          79 RWSKLE   84 (84)
T ss_pred             CCccCC
Confidence            999983

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=99.69  E-value=1.8e-16  Score=109.51  Aligned_cols=83  Identities=18%  Similarity=0.220  Sum_probs=72.9

Q ss_pred             cEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCceecCCCCCCcccCCceeEeeCCeEEEEEEecCC
Q 031527           20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDK   96 (158)
Q Consensus        20 ~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~~   96 (158)
                      +|.|+||.+.|+|+|.++ ++..+++.|.+++++|+|.+.   +..+.+..+||++|+|+.|+|++.+++|+|.|+|+++
T Consensus         2 R~dW~Qs~~~V~ItI~~k-~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~   80 (87)
T cd06488           2 RHDWHQTGSHVVVSVYAK-NSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP   80 (87)
T ss_pred             CccEeeCCCEEEEEEEEC-cCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence            699999999999999874 888999999999999887553   3345678899999999999999999999999999987


Q ss_pred             CCCCCCCc
Q 031527           97 GQTWASPI  104 (158)
Q Consensus        97 ~~~W~~L~  104 (158)
                       ..|++|.
T Consensus        81 -~~W~~Le   87 (87)
T cd06488          81 -GSWAKLE   87 (87)
T ss_pred             -CcCccCC
Confidence             5899983

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.68  E-value=4.5e-16  Score=131.98  Aligned_cols=131  Identities=21%  Similarity=0.310  Sum_probs=109.4

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCceecCCCCCCcccCCceeEeeCCeEEEEEEec
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~   94 (158)
                      ..+|.|+||.+.|+|+|.+. ++...++.|+|++++|+|.+.   +..+.+..+||++|+|+.|+++|...+|+|+|+|+
T Consensus       156 ~~r~dWyQs~~~V~i~i~~k-~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~  234 (356)
T PLN03088        156 KYRHEFYQKPEEVVVTVFAK-GVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKA  234 (356)
T ss_pred             ccccceeecCCEEEEEEEec-CCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEecceEEEEEecC
Confidence            46899999999999999875 889999999999999998874   33455778999999999999999999999999999


Q ss_pred             CCCCCCCCCcCCCC-------------------------CCCCC------------------------------ccHHHH
Q 031527           95 DKGQTWASPIMGQG-------------------------QLDPY------------------------------VTDQEQ  119 (158)
Q Consensus        95 ~~~~~W~~L~~~~~-------------------------~id~~------------------------------~~de~~  119 (158)
                      +. ..|++|...+.                         ..|+.                              ..|++.
T Consensus       235 ~~-~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~f~~iY~~~d~d~  313 (356)
T PLN03088        235 EP-ITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFFREIYQNADEDT  313 (356)
T ss_pred             CC-CCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHHHHHHHhcCCHHH
Confidence            86 68999974421                         01110                              368899


Q ss_pred             HHHHHHHHHHhCC-----CC-CCCCCCCCCCCCCccc
Q 031527          120 KRLMLQRFQEENP-----GF-DFSQAQFTGSCPDPRT  150 (158)
Q Consensus       120 ~~~~l~~~~~~~~-----~~-df~~~~~~g~~~dp~~  150 (158)
                      ||.|++.|++.++     +| |....++.+.||++-.
T Consensus       314 rram~KSf~eS~gt~lstnw~~v~~~~~e~~pp~g~e  350 (356)
T PLN03088        314 RRAMMKSFVESNGTVLSTNWKEVGSKKIEGSPPDGME  350 (356)
T ss_pred             HHHHHHHhhhcCCeEEeccHHHhcCCccccCCCCCCc
Confidence            9999999999877     77 7888999999998753

>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]

Probab=99.67  E-value=2.9e-16  Score=120.82  Aligned_cols=129  Identities=23%  Similarity=0.346  Sum_probs=105.3

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCceecCCCCCCcccCCceeEeeCCeEEEEEEec
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~   94 (158)
                      ..+|.|+||.++|+|+|. .+++..+||.|.|+.+.|++.++   |..+.+.+.||++|.|+.|++++...+|+|+|.|+
T Consensus         3 k~r~DwyQt~~~vvIti~-~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~   81 (196)
T KOG1309|consen    3 KIRHDWYQTETSVVITIF-AKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA   81 (196)
T ss_pred             cccceeecCCceEEEEEE-ecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence            468999999999999995 46899999999999998887665   34466888999999999999999999999999997


Q ss_pred             CCCCCCCCCcCCCCC---------------------CCCC-----------------------------ccHHHHHHHHH
Q 031527           95 DKGQTWASPIMGQGQ---------------------LDPY-----------------------------VTDQEQKRLML  124 (158)
Q Consensus        95 ~~~~~W~~L~~~~~~---------------------id~~-----------------------------~~de~~~~~~l  124 (158)
                      +. ..|..|.+|.+.                     .|+.                             .++++.||+|+
T Consensus        82 ~~-irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~e~l~dAAl~~lF~kiY~~addDvrRAM~  160 (196)
T KOG1309|consen   82 EI-IRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEEDEKLEDAALNKLFQKIYSDADDDVRRAMM  160 (196)
T ss_pred             cc-hhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            64 899999965431                     1110                             25888899999


Q ss_pred             HHHHHhCC-----CC-CCCCCCCCCCCCCc
Q 031527          125 QRFQEENP-----GF-DFSQAQFTGSCPDP  148 (158)
Q Consensus       125 ~~~~~~~~-----~~-df~~~~~~g~~~dp  148 (158)
                      +.|.+.++     +| |...-.+.-+|||.
T Consensus       161 KSf~ESnGTvLSTnW~eVg~kkve~~PP~g  190 (196)
T KOG1309|consen  161 KSFSESNGTVLSTNWSEVGKKKVETKPPDG  190 (196)
T ss_pred             hhhhhcCCeEEeccHHHhccceeeecCCCC
Confidence            99998877     66 56666688888875

>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]

Probab=99.54  E-value=1.4e-14  Score=124.59  Aligned_cols=126  Identities=21%  Similarity=0.349  Sum_probs=110.4

Q ss_pred             cccCCCCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeC-CeEEEEE
Q 031527           13 FLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED-DVMHITL   91 (158)
Q Consensus        13 ~~~ng~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~-~~l~i~L   91 (158)
                      +...|.|.|.|.||.+++.|++.+|...+++++.|.+..++|.+...++ .+|+|+||+.|..+.|.|.|.. ++|++.|
T Consensus       284 ~e~~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~dh-~~~~g~lyasv~he~s~~ii~ean~Le~sl  362 (596)
T KOG4379|consen  284 LENGGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHLDH-VIFDGELYASVGHELSAFIIAEANGLELSL  362 (596)
T ss_pred             hhccCCccceeeeccCcceEEEecccccccceEEEEecCceEEEEeeee-EEeccchhhhccccchhhhhhhhccceEEE
Confidence            3444568999999999999999999999999999999999999988765 8999999999999999999987 7999999


Q ss_pred             EecCCCCCCCCCcCCC--CCCC--CCccHHHHHHHHHHHHHHhCCCCCCCCC
Q 031527           92 TKRDKGQTWASPIMGQ--GQLD--PYVTDQEQKRLMLQRFQEENPGFDFSQA  139 (158)
Q Consensus        92 ~K~~~~~~W~~L~~~~--~~id--~~~~de~~~~~~l~~~~~~~~~~df~~~  139 (158)
                      .|++.+..|++|+.++  ++||  .+.++...+++|.-.+++-||.-|-+-.
T Consensus       363 ~K~de~~twprL~~~dksGEideDveiCad~aEkLisveyeel~p~ed~e~p  414 (596)
T KOG4379|consen  363 TKADEIQTWPRLFAQDKSGEIDEDVEICADVAEKLISVEYEELHPMEDPELP  414 (596)
T ss_pred             eecccccccchheeecccccchhhhHHHHHHHHHhhccchhhcCCCCCCCCC
Confidence            9998888999999887  4776  4567888899999999998997765533

>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=6.1e-14  Score=107.37  Aligned_cols=91  Identities=13%  Similarity=0.235  Sum_probs=79.3

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC----CceecCCCCCCcccCCceeEeeCCeEEEEEEe
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN----PPYLNHELTCPVKTDSSFWTLEDDVMHITLTK   93 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~----~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K   93 (158)
                      .|...|+|+.+-|+++|.|+   .+++++|+++++.|.++.++.    .++++.+||+.|+|++|..++.++.|.+.|+|
T Consensus         7 ~p~v~Waqr~~~vyltv~Ve---d~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K   83 (180)
T KOG3158|consen    7 PPEVKWAQRRDLVYLTVCVE---DAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRK   83 (180)
T ss_pred             CCcchhhhhcCeEEEEEEec---cCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEc
Confidence            46799999999999999999   688999999999999987642    23466899999999999999998889999999


Q ss_pred             cCCCCCCCCCcCCCCCCC
Q 031527           94 RDKGQTWASPIMGQGQLD  111 (158)
Q Consensus        94 ~~~~~~W~~L~~~~~~id  111 (158)
                      ++.+.+|++|++...++.
T Consensus        84 ~e~~~~WprLtkeK~K~h  101 (180)
T KOG3158|consen   84 KELGEYWPRLTKEKAKLH  101 (180)
T ss_pred             cccccccchhhhcccccc
Confidence            887789999999887654

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=99.42  E-value=1.1e-12  Score=90.78  Aligned_cols=81  Identities=17%  Similarity=0.297  Sum_probs=66.1

Q ss_pred             EEEEeeCCEEEEEEEcCC-CCCCCceEEEeeccEEEEEec--CCCceecCCCCCCcccCCceeEee--CCeEEEEEEecC
Q 031527           21 FEWDQTLDEINIYINLPP-NVHSKQFYCKIQSKHIELGIK--GNPPYLNHELTCPVKTDSSFWTLE--DDVMHITLTKRD   95 (158)
Q Consensus        21 Y~W~Qt~~~V~I~i~lp~-~~~~kdv~V~i~~~~l~v~v~--g~~~~l~g~L~~~I~~deS~w~i~--~~~l~i~L~K~~   95 (158)
                      |.|+||.+.|+|+|..+. +.+..++.+.+..++|+|.+.  +....++.+|+++|+++ |+.++.  .++|+|.|+|++
T Consensus         1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~-~~~~~~~~~~KVEI~L~K~e   79 (87)
T cd06490           1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWP-CEVRISTETGKIELVLKKKE   79 (87)
T ss_pred             CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCC-cEEEEcccCceEEEEEEcCC
Confidence            689999999999998654 556777888888888888764  44456788999999755 488888  569999999998


Q ss_pred             CCCCCCCC
Q 031527           96 KGQTWASP  103 (158)
Q Consensus        96 ~~~~W~~L  103 (158)
                      + ..|++|
T Consensus        80 ~-~~W~~L   86 (87)
T cd06490          80 P-EKWTSL   86 (87)
T ss_pred             C-CccccC
Confidence            7 689987

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=99.13  E-value=1.7e-10  Score=75.21  Aligned_cols=70  Identities=29%  Similarity=0.402  Sum_probs=62.2

Q ss_pred             EEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC----------CCceecCCCCCCcccCCceeEeeCCeEEEEEE
Q 031527           23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG----------NPPYLNHELTCPVKTDSSFWTLEDDVMHITLT   92 (158)
Q Consensus        23 W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g----------~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~   92 (158)
                      |+|+.+.|+|+|.+| +..++++.|.++++.|.|....          ....+...|++.|+++.|+|++.++.|.|.|.
T Consensus         1 ~~q~~~~v~i~i~~~-~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~   79 (80)
T cd00298           1 WYQTDDEVVVTVDLP-GVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP   79 (80)
T ss_pred             CEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence            899999999999998 5678999999999999998652          23457788999999999999999999999998


Q ss_pred             e
Q 031527           93 K   93 (158)
Q Consensus        93 K   93 (158)
                      |
T Consensus        80 K   80 (80)
T cd00298          80 K   80 (80)
T ss_pred             C
Confidence            7

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]

Probab=98.74  E-value=1.4e-08  Score=78.77  Aligned_cols=85  Identities=20%  Similarity=0.401  Sum_probs=73.6

Q ss_pred             CcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCc-eecCCCCCCcccCCceeEeeCCeEEEEEEec
Q 031527           19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPP-YLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (158)
Q Consensus        19 ~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~-~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~   94 (158)
                      ..|.|.|+...|.++|.|. |+...+|.|.|++.+|.+.++   |..+ ++-.+|+++|.++.|+-.+....|.|.++|.
T Consensus        75 t~ygWDQs~kfVK~yItL~-GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkV  153 (224)
T KOG3260|consen   75 TLYGWDQSNKFVKMYITLE-GVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKV  153 (224)
T ss_pred             hhcCccccCCeeEEEEEee-cccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhh
Confidence            3599999999999999995 888999999999999999876   4432 4667899999999999999999999999887


Q ss_pred             CCCCCCCCCcC
Q 031527           95 DKGQTWASPIM  105 (158)
Q Consensus        95 ~~~~~W~~L~~  105 (158)
                      +. ..|..|..
T Consensus       154 e~-~rwd~Lt~  163 (224)
T KOG3260|consen  154 EN-TRWDYLTQ  163 (224)
T ss_pred             hc-ccchHHHH
Confidence            65 78998863

>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]

Probab=98.64  E-value=1e-07  Score=77.47  Aligned_cols=96  Identities=19%  Similarity=0.311  Sum_probs=72.9

Q ss_pred             ccccccccCCC---CcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCce-ecCCCCCCcccCCcee
Q 031527            8 EKRHRFLHNGQ---TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPY-LNHELTCPVKTDSSFW   80 (158)
Q Consensus         8 ~~~~~~~~ng~---~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~~-l~g~L~~~I~~deS~w   80 (158)
                      .++|+...+-.   -+|.|.||...|+|.|.-. +.....-.|......|.|.+.   |+..+ ++-+|++-|++++|+-
T Consensus       201 ~GeH~w~k~~~V~~cR~Dwhqt~~~Vti~VY~k-~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v  279 (320)
T KOG1667|consen  201 SGEHKWRKNEIVVKCRHDWHQTNGFVTINVYAK-GALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSV  279 (320)
T ss_pred             ccchhhhccCccccchhhhhhcCCeEEEEEEec-cCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceE
Confidence            45566555442   3899999999999999854 434445566777777776654   33222 5678999999999999


Q ss_pred             EeeCCeEEEEEEecCCCCCCCCCcC
Q 031527           81 TLEDDVMHITLTKRDKGQTWASPIM  105 (158)
Q Consensus        81 ~i~~~~l~i~L~K~~~~~~W~~L~~  105 (158)
                      .+...+|+|+|.|+++ ..|++|--
T Consensus       280 ~m~~tkVEIsl~k~ep-~sWa~Le~  303 (320)
T KOG1667|consen  280 VMGETKVEISLKKAEP-GSWARLEF  303 (320)
T ss_pred             EeecceEEEEEeccCC-CCcccccC
Confidence            9999999999999998 57999943

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=98.43  E-value=2.3e-07  Score=76.43  Aligned_cols=127  Identities=19%  Similarity=0.233  Sum_probs=97.1

Q ss_pred             CcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC---C-CceecCCCCCCcccCCceeEeeCCeEEEEEEec
Q 031527           19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---N-PPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (158)
Q Consensus        19 ~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g---~-~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~   94 (158)
                      -+|.|+||...+.|.|.-| .+...+|++.+.++.|+|.++-   . ...+...||+.|.|+-++.++-...++++|+|.
T Consensus       177 i~yd~s~Ts~t~~ifiy~~-pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV  255 (368)
T COG5091         177 IAYDFSETSDTAIIFIYRP-PVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKV  255 (368)
T ss_pred             eeeeccccceeEEEEEecC-CCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhh
Confidence            4799999999999998644 5678889999999999988752   1 123556899999999999999888899999998


Q ss_pred             CCCCCCCCCcCCCC-----------------------CCCCC-------------------------ccHHHHHHHHHHH
Q 031527           95 DKGQTWASPIMGQG-----------------------QLDPY-------------------------VTDQEQKRLMLQR  126 (158)
Q Consensus        95 ~~~~~W~~L~~~~~-----------------------~id~~-------------------------~~de~~~~~~l~~  126 (158)
                      +. ..|..|.....                       ++|+.                         -+|++-||.|++.
T Consensus       256 ~~-v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~dEe~ps~~dslFqklY~~addDtrRAMmKS  334 (368)
T COG5091         256 EM-VRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGDEENPSVMDSLFQKLYQRADDDTRRAMMKS  334 (368)
T ss_pred             hh-hhhcccccCccccccccccccccccccCCccccccccHHHhhhhhcccccCchHHHHHHHHHHhcCCchHHHHHHHH
Confidence            75 78998875321                       12211                         2588899999999


Q ss_pred             HHHhCC-----CC-CCCCCCCCCCCCC
Q 031527          127 FQEENP-----GF-DFSQAQFTGSCPD  147 (158)
Q Consensus       127 ~~~~~~-----~~-df~~~~~~g~~~d  147 (158)
                      |-+.++     +| |.+.-.|.-.||.
T Consensus       335 f~ESnGTaLSTdW~dVkskt~~t~pPe  361 (368)
T COG5091         335 FYESNGTALSTDWDDVKSKTITTEPPE  361 (368)
T ss_pred             HhhcCCceecccHHHhhcCceecCCCC
Confidence            998876     55 5666667666664

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=3.6e-05  Score=57.64  Aligned_cols=79  Identities=16%  Similarity=0.223  Sum_probs=66.6

Q ss_pred             CCCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCC------------------ceecCCCCCCcccCCc
Q 031527           17 GQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP------------------PYLNHELTCPVKTDSS   78 (158)
Q Consensus        17 g~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~------------------~~l~g~L~~~I~~deS   78 (158)
                      +.|.|...++.+++.|++.|| |++++||+|.+..+.|.|+..-..                  ..-.-.|...|+++..
T Consensus        39 ~~P~vdi~e~~~~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~  117 (146)
T COG0071          39 GTPPVDIEETDDEYRITAELP-GVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI  117 (146)
T ss_pred             CCCcEEEEEcCCEEEEEEEcC-CCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence            578999999999999999998 899999999999999888764210                  0122359999999988


Q ss_pred             eeEeeCCeEEEEEEecCC
Q 031527           79 FWTLEDDVMHITLTKRDK   96 (158)
Q Consensus        79 ~w~i~~~~l~i~L~K~~~   96 (158)
                      .-++.+|.|.|+|.|.++
T Consensus       118 ~A~~~nGvL~I~lpk~~~  135 (146)
T COG0071         118 KAKYKNGLLTVTLPKAEP  135 (146)
T ss_pred             eeEeeCcEEEEEEecccc
Confidence            899999999999999875

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=97.79  E-value=0.00012  Score=50.50  Aligned_cols=73  Identities=15%  Similarity=0.245  Sum_probs=58.0

Q ss_pred             cEEEEeeCCEEEEEEEcCCCCCCCceEEEeecc-EEEEEecC--------CC----------ceecCCCCCCcccCCcee
Q 031527           20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSK-HIELGIKG--------NP----------PYLNHELTCPVKTDSSFW   80 (158)
Q Consensus        20 ~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~-~l~v~v~g--------~~----------~~l~g~L~~~I~~deS~w   80 (158)
                      ++.|.++.+.+.|.+.|| |++++|+.|.+..+ .|.|+..-        ..          ..-.-.|...|+++.-+.
T Consensus         1 ~~dv~E~~~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A   79 (92)
T cd06472           1 RVDWKETPEAHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKA   79 (92)
T ss_pred             CccEEEcCCeEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEE
Confidence            367999999999999998 78999999999865 78886531        00          111235888999998899


Q ss_pred             EeeCCeEEEEEEe
Q 031527           81 TLEDDVMHITLTK   93 (158)
Q Consensus        81 ~i~~~~l~i~L~K   93 (158)
                      ++.+|.|.|+|-|
T Consensus        80 ~~~nGvL~I~lPK   92 (92)
T cd06472          80 FLENGVLTVTVPK   92 (92)
T ss_pred             EEECCEEEEEecC
Confidence            9999999999876

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=97.62  E-value=0.00035  Score=48.60  Aligned_cols=74  Identities=20%  Similarity=0.293  Sum_probs=56.1

Q ss_pred             EEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC------Cc--------ee--cCCCCCCcccCCceeEeeCC
Q 031527           22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN------PP--------YL--NHELTCPVKTDSSFWTLEDD   85 (158)
Q Consensus        22 ~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~------~~--------~l--~g~L~~~I~~deS~w~i~~~   85 (158)
                      .|.++.+.+.|.+.|| ++.+++++|.+..+.|.|...-.      ..        -|  .-.|...|+++.-+.++++|
T Consensus         1 di~e~~~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G   79 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG   79 (102)
T ss_dssp             EEEESSSEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred             CeEECCCEEEEEEECC-CCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence            4789999999999998 88999999999999988865311      11        11  23588899999989999999


Q ss_pred             eEEEEEEecCC
Q 031527           86 VMHITLTKRDK   96 (158)
Q Consensus        86 ~l~i~L~K~~~   96 (158)
                      .|.|++-|...
T Consensus        80 vL~I~~pk~~~   90 (102)
T PF00011_consen   80 VLTITIPKKEE   90 (102)
T ss_dssp             EEEEEEEBSSS
T ss_pred             EEEEEEEcccc
Confidence            99999999865

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=97.49  E-value=0.00059  Score=46.94  Aligned_cols=72  Identities=21%  Similarity=0.274  Sum_probs=56.6

Q ss_pred             cEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCC---------ce---------ec--CCCCCCcccCCce
Q 031527           20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP---------PY---------LN--HELTCPVKTDSSF   79 (158)
Q Consensus        20 ~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~---------~~---------l~--g~L~~~I~~deS~   79 (158)
                      +..+.++.+.+.|.+.|| |++++|++|.+..+.|.|+..-..         .+         |.  -.|. .|+++...
T Consensus         2 ~~di~e~~~~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~   79 (93)
T cd06471           2 KTDIKETDDEYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIK   79 (93)
T ss_pred             ceeEEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCE
Confidence            468899999999999998 899999999999999998653110         01         11  1354 68888888


Q ss_pred             eEeeCCeEEEEEEe
Q 031527           80 WTLEDDVMHITLTK   93 (158)
Q Consensus        80 w~i~~~~l~i~L~K   93 (158)
                      .++.+|.|.|+|-|
T Consensus        80 A~~~dGvL~I~lPK   93 (93)
T cd06471          80 AKYENGVLKITLPK   93 (93)
T ss_pred             EEEECCEEEEEEcC
Confidence            99999999999876

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=97.48  E-value=0.00057  Score=45.60  Aligned_cols=70  Identities=20%  Similarity=0.209  Sum_probs=57.0

Q ss_pred             EEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----------------CceecCCCCCCcccCCceeEeeCC
Q 031527           23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----------------PPYLNHELTCPVKTDSSFWTLEDD   85 (158)
Q Consensus        23 W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----------------~~~l~g~L~~~I~~deS~w~i~~~   85 (158)
                      +.++.+.+.|.+.|| ++.++++.|.+..+.|.|..+-.                 ...-.-.|...|+++..+.++.+|
T Consensus         2 i~e~~~~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G   80 (88)
T cd06464           2 VYETDDAYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG   80 (88)
T ss_pred             cEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence            568889999999998 68999999999999999874311                 012233599999999999999999


Q ss_pred             eEEEEEEe
Q 031527           86 VMHITLTK   93 (158)
Q Consensus        86 ~l~i~L~K   93 (158)
                      .|.|++.|
T Consensus        81 ~L~I~~pk   88 (88)
T cd06464          81 VLTITLPK   88 (88)
T ss_pred             EEEEEEcC
Confidence            99999865

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=97.02  E-value=0.0074  Score=50.16  Aligned_cols=67  Identities=18%  Similarity=0.267  Sum_probs=57.5

Q ss_pred             eeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeC--CeEEEEE
Q 031527           25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED--DVMHITL   91 (158)
Q Consensus        25 Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~--~~l~i~L   91 (158)
                      ...+.+.|+|.||.-.+.+++.++++++.|.|.+.+..+.|+..|..+|+.+.+.-++..  +.|.|+|
T Consensus       258 ~~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtl  326 (328)
T PF08190_consen  258 GSPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTL  326 (328)
T ss_pred             CCCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCCcccCCCceEEEccCCCEEEEEE
Confidence            346899999999965599999999999999999986447899999999999998877765  4788887

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=96.99  E-value=0.0068  Score=41.68  Aligned_cols=70  Identities=14%  Similarity=0.205  Sum_probs=52.0

Q ss_pred             EEEEee-CCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC------C-----------ceecCCCCCCcccCCceeEe
Q 031527           21 FEWDQT-LDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN------P-----------PYLNHELTCPVKTDSSFWTL   82 (158)
Q Consensus        21 Y~W~Qt-~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~------~-----------~~l~g~L~~~I~~deS~w~i   82 (158)
                      +.=.++ .+...|.+.|| ++++.|++|.+..+.|.|+..-.      .           ..-.-.|...|+.+  ..++
T Consensus         3 ~di~e~~~~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~   79 (90)
T cd06470           3 YNIEKTGENNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL   79 (90)
T ss_pred             eeeEEcCCCeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE
Confidence            344455 48999999998 89999999999999999974310      0           11123477888875  6789


Q ss_pred             eCCeEEEEEEe
Q 031527           83 EDDVMHITLTK   93 (158)
Q Consensus        83 ~~~~l~i~L~K   93 (158)
                      ++|.|.|+|.+
T Consensus        80 ~~GvL~I~l~~   90 (90)
T cd06470          80 ENGLLTIDLER   90 (90)
T ss_pred             eCCEEEEEEEC
Confidence            99999999864

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=96.98  E-value=0.0035  Score=42.97  Aligned_cols=69  Identities=17%  Similarity=0.300  Sum_probs=55.2

Q ss_pred             EeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Cce----e--cCCCCCCcccCCceeEe-eCCeEEEEE
Q 031527           24 DQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----L--NHELTCPVKTDSSFWTL-EDDVMHITL   91 (158)
Q Consensus        24 ~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~----l--~g~L~~~I~~deS~w~i-~~~~l~i~L   91 (158)
                      ..+.+.+.|.+.|| |++++|++|++..+.|.|+..-.     ..+    |  .-.|...|+++.-+-++ .+|.|.|+|
T Consensus         6 ~e~~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~   84 (86)
T cd06497           6 RSDRDKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSG   84 (86)
T ss_pred             EEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEe
Confidence            45788999999998 89999999999999998875311     112    2  23588899999999999 789999998


Q ss_pred             Ee
Q 031527           92 TK   93 (158)
Q Consensus        92 ~K   93 (158)
                      -|
T Consensus        85 PK   86 (86)
T cd06497          85 PK   86 (86)
T ss_pred             cC
Confidence            66

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=96.90  E-value=0.0044  Score=42.16  Aligned_cols=68  Identities=15%  Similarity=0.234  Sum_probs=53.4

Q ss_pred             eeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Cce----e--cCCCCCCcccCCceeEe-eCCeEEEEEE
Q 031527           25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----L--NHELTCPVKTDSSFWTL-EDDVMHITLT   92 (158)
Q Consensus        25 Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~----l--~g~L~~~I~~deS~w~i-~~~~l~i~L~   92 (158)
                      .+.+.+.|.+.|| |++++||+|++..+.|.|..+-.     .-+    |  .-.|...|+++.-+-++ .+|.|.|+|-
T Consensus         4 ~~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P   82 (83)
T cd06478           4 LDKDRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP   82 (83)
T ss_pred             ecCceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence            5678999999998 89999999999999998865311     112    2  23588889988888898 5889999886


Q ss_pred             e
Q 031527           93 K   93 (158)
Q Consensus        93 K   93 (158)
                      |
T Consensus        83 K   83 (83)
T cd06478          83 R   83 (83)
T ss_pred             C
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=96.85  E-value=0.0049  Score=42.13  Aligned_cols=69  Identities=13%  Similarity=0.240  Sum_probs=54.7

Q ss_pred             eeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Cce----e--cCCCCCCcccCCceeEee-CCeEEEEEE
Q 031527           25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----L--NHELTCPVKTDSSFWTLE-DDVMHITLT   92 (158)
Q Consensus        25 Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~----l--~g~L~~~I~~deS~w~i~-~~~l~i~L~   92 (158)
                      -+.+...|.+.|| +++++|++|++..+.|.|..+-+     ..+    |  .-.|...|+++.-+-++. +|.|.|+|-
T Consensus         4 ~~~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lP   82 (84)
T cd06498           4 LEKDKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGP   82 (84)
T ss_pred             eCCceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEe
Confidence            3578899999997 89999999999999999876411     111    1  225888999999999995 899999997


Q ss_pred             ec
Q 031527           93 KR   94 (158)
Q Consensus        93 K~   94 (158)
                      |.
T Consensus        83 k~   84 (84)
T cd06498          83 RK   84 (84)
T ss_pred             CC
Confidence            74

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=96.82  E-value=0.0039  Score=42.47  Aligned_cols=69  Identities=14%  Similarity=0.225  Sum_probs=54.5

Q ss_pred             EeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec--CCC--c---e-ecCCCCCCcccCCceeEe-eCCeEEEEEEe
Q 031527           24 DQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK--GNP--P---Y-LNHELTCPVKTDSSFWTL-EDDVMHITLTK   93 (158)
Q Consensus        24 ~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~--g~~--~---~-l~g~L~~~I~~deS~w~i-~~~~l~i~L~K   93 (158)
                      ..+.+.+.|.+.|| +++++||+|++..+.|+|...  ...  .   + =.-.|+..|+++.-+-++ .+|.|.|+|.+
T Consensus         4 ~e~~~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479           4 KTLGDTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             cCcCCeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence            35788999999998 899999999999999998653  110  1   1 123589999999999998 88999999864

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=96.80  E-value=0.0077  Score=41.28  Aligned_cols=69  Identities=16%  Similarity=0.238  Sum_probs=54.5

Q ss_pred             EEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCC-----ce----e--cCCCCCCcccCCceeEee-CCeEEE
Q 031527           22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP-----PY----L--NHELTCPVKTDSSFWTLE-DDVMHI   89 (158)
Q Consensus        22 ~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~-----~~----l--~g~L~~~I~~deS~w~i~-~~~l~i   89 (158)
                      .+..+.+.+.|.+.|| |+++++++|++..+.|.|+.+-+.     .+    |  .-.|...|+++.-.-++. +|.|.|
T Consensus         4 ~i~e~~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I   82 (86)
T cd06475           4 EIRQTADRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV   82 (86)
T ss_pred             eEEEcCCeEEEEEECC-CCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence            5678999999999998 899999999999999998764211     11    1  224778888888888887 888888


Q ss_pred             EE
Q 031527           90 TL   91 (158)
Q Consensus        90 ~L   91 (158)
                      +|
T Consensus        83 ~l   84 (86)
T cd06475          83 EA   84 (86)
T ss_pred             Ee
Confidence            76

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>PRK10743 heat shock protein IbpA; Provisional

Probab=96.79  E-value=0.012  Score=43.96  Aligned_cols=74  Identities=9%  Similarity=0.097  Sum_probs=58.8

Q ss_pred             CcEEEEe-eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC------CCce--------e--cCCCCCCcccCCceeE
Q 031527           19 TVFEWDQ-TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG------NPPY--------L--NHELTCPVKTDSSFWT   81 (158)
Q Consensus        19 ~~Y~W~Q-t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g------~~~~--------l--~g~L~~~I~~deS~w~   81 (158)
                      |++.-.+ +.+.+.|.+.|| |++++||+|.+..+.|.|+..-      ..++        |  .-.|...|+.+.  -+
T Consensus        35 p~~di~ee~~~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~  111 (137)
T PRK10743         35 PPYNVELVDENHYRIAIAVA-GFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN  111 (137)
T ss_pred             CcEEEEEcCCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence            7788884 899999999998 8999999999999999987531      1111        1  124788898883  88


Q ss_pred             eeCCeEEEEEEecC
Q 031527           82 LEDDVMHITLTKRD   95 (158)
Q Consensus        82 i~~~~l~i~L~K~~   95 (158)
                      +++|.|.|+|-|+.
T Consensus       112 ~~dGVL~I~lPK~~  125 (137)
T PRK10743        112 LVNGLLYIDLERVI  125 (137)
T ss_pred             EeCCEEEEEEeCCC
Confidence            89999999999963

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=96.52  E-value=0.0069  Score=40.88  Aligned_cols=65  Identities=15%  Similarity=0.203  Sum_probs=51.9

Q ss_pred             CEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----------CceecCCCCCCcccCCceeEeeC-CeEEEEEEe
Q 031527           28 DEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----------PPYLNHELTCPVKTDSSFWTLED-DVMHITLTK   93 (158)
Q Consensus        28 ~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----------~~~l~g~L~~~I~~deS~w~i~~-~~l~i~L~K   93 (158)
                      +.+.|.+.|| +++++||+|.+..+.|.|..+-+           ...-.-.|...|+++.-+-++.+ |.|.|++.|
T Consensus         7 ~~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526           7 EKFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             eeEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence            5889999998 79999999999999999876411           01123358899999988889987 899998865

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=96.50  E-value=0.019  Score=43.12  Aligned_cols=74  Identities=9%  Similarity=0.152  Sum_probs=57.3

Q ss_pred             CCcEEEEe-eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC------CCce--------ec--CCCCCCcccCCcee
Q 031527           18 QTVFEWDQ-TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG------NPPY--------LN--HELTCPVKTDSSFW   80 (158)
Q Consensus        18 ~~~Y~W~Q-t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g------~~~~--------l~--g~L~~~I~~deS~w   80 (158)
                      .|.+.=.+ +.+.+.|++.|| |++++||+|.+..+.|+|+...      ..++        |.  -.|...|+++  .-
T Consensus        32 ~P~vdI~e~~~~~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A  108 (142)
T PRK11597         32 FPPYNIEKSDDNHYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GA  108 (142)
T ss_pred             CCcEEEEEcCCCEEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cC
Confidence            36677776 567899999998 8999999999999999997641      1111        11  2377888887  58


Q ss_pred             EeeCCeEEEEEEec
Q 031527           81 TLEDDVMHITLTKR   94 (158)
Q Consensus        81 ~i~~~~l~i~L~K~   94 (158)
                      ++++|.|.|+|-|.
T Consensus       109 ~~~nGVL~I~lPK~  122 (142)
T PRK11597        109 TFVNGLLHIDLIRN  122 (142)
T ss_pred             EEcCCEEEEEEecc
Confidence            89999999999986

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=96.15  E-value=0.031  Score=38.07  Aligned_cols=67  Identities=10%  Similarity=0.189  Sum_probs=51.8

Q ss_pred             eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Ccee------cCCCCCCcccCCceeEee-CCeEEEEEEe
Q 031527           26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPYL------NHELTCPVKTDSSFWTLE-DDVMHITLTK   93 (158)
Q Consensus        26 t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~l------~g~L~~~I~~deS~w~i~-~~~l~i~L~K   93 (158)
                      ..+...|.+.|| ++++.|++|++..+.|.|..+-.     .-+.      .-.|...|+++.-+-++. +|.|.|+|-|
T Consensus         5 ~~d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr   83 (83)
T cd06476           5 EDDKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR   83 (83)
T ss_pred             cCCeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence            456788999998 88999999999999999865411     0121      124888999999999996 8999998854

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=95.77  E-value=0.037  Score=37.92  Aligned_cols=65  Identities=11%  Similarity=0.258  Sum_probs=49.6

Q ss_pred             eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC---C----Cce------e--cCCCCCCcccCCceeEe-eCCeEEE
Q 031527           26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---N----PPY------L--NHELTCPVKTDSSFWTL-EDDVMHI   89 (158)
Q Consensus        26 t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g---~----~~~------l--~g~L~~~I~~deS~w~i-~~~~l~i   89 (158)
                      ..+.+.|.+.|| +++++||.|++..+.|.|..+-   .    ..+      |  .-.|...|+++.-.-.+ .+|.|.|
T Consensus         5 ~~d~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I   83 (87)
T cd06481           5 GKEGFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHI   83 (87)
T ss_pred             ccceEEEEEECC-CCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEE
Confidence            356789999998 8899999999999999986531   0    011      1  22488899999888888 7888888


Q ss_pred             EE
Q 031527           90 TL   91 (158)
Q Consensus        90 ~L   91 (158)
                      ++
T Consensus        84 ~~   85 (87)
T cd06481          84 RA   85 (87)
T ss_pred             Ec
Confidence            75

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=94.84  E-value=0.24  Score=38.59  Aligned_cols=71  Identities=13%  Similarity=0.279  Sum_probs=50.4

Q ss_pred             EEeeCC-EEEEEEEcCCCCCCCc-eEEEeecc--EEEEEecCCCceecCCCCCCcccCCceeEeeCCeEEEEEEecCC
Q 031527           23 WDQTLD-EINIYINLPPNVHSKQ-FYCKIQSK--HIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDK   96 (158)
Q Consensus        23 W~Qt~~-~V~I~i~lp~~~~~kd-v~V~i~~~--~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~~   96 (158)
                      =.+..+ ++.|...|| ++...+ +.|.+..+  .|.+.+.+. ++=...|..+ .++--.+++..+.|+|.|+|.++
T Consensus        96 tre~dDge~~VvAdLP-GVs~dd~idV~l~~d~~~L~i~~~~~-~~krv~L~~~-~~e~~~~t~nNgILEIri~~~~~  170 (177)
T PF05455_consen   96 TRERDDGELVVVADLP-GVSDDDAIDVTLDDDEGALTIRVGEK-YLKRVALPWP-DPEITSATFNNGILEIRIRRTEE  170 (177)
T ss_pred             eEecCCCcEEEEEeCC-CCCcccceeeEeecCCceEEEecCCc-eEeeEecCCC-ccceeeEEEeCceEEEEEeecCC
Confidence            334556 799999998 676666 88888754  555555443 4444467766 45655889999999999999875

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=94.57  E-value=0.26  Score=33.63  Aligned_cols=65  Identities=8%  Similarity=0.109  Sum_probs=49.1

Q ss_pred             eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Cce----e--cCCCCCCcccCCceeEe-eCCeEEEEE
Q 031527           26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----L--NHELTCPVKTDSSFWTL-EDDVMHITL   91 (158)
Q Consensus        26 t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~----l--~g~L~~~I~~deS~w~i-~~~~l~i~L   91 (158)
                      +.+...|.+.|| ++++.||+|++..+.|+|...-.     .-+    |  .-.|...|+++.-+-++ .+|.|.|.-
T Consensus         5 ~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~   81 (83)
T cd06477           5 GKPMFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVET   81 (83)
T ss_pred             CCceEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEe
Confidence            567889999998 89999999999999999976411     111    1  12488889999888887 677777753

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=91.13  E-value=0.46  Score=32.70  Aligned_cols=64  Identities=11%  Similarity=0.196  Sum_probs=47.4

Q ss_pred             eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC---C-----ce----ec--CCCCCCcccCCceeEeeCC-eEEEE
Q 031527           26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN---P-----PY----LN--HELTCPVKTDSSFWTLEDD-VMHIT   90 (158)
Q Consensus        26 t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~---~-----~~----l~--g~L~~~I~~deS~w~i~~~-~l~i~   90 (158)
                      ..+.+.|++.|| |++++||+|++..+.|+|...-+   +     .+    |.  -.|...|+.+.-+-++.++ .|.|.
T Consensus         6 ~~~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~   84 (87)
T cd06482           6 DSSNVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE   84 (87)
T ss_pred             cCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence            357899999998 89999999999999999976411   0     01    11  2477888888888888876 56653

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=87.60  E-value=3.4  Score=28.60  Aligned_cols=65  Identities=14%  Similarity=0.226  Sum_probs=46.5

Q ss_pred             eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Cceec------CCCCCCcccCCceeEee-CCeEEEEE
Q 031527           26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPYLN------HELTCPVKTDSSFWTLE-DDVMHITL   91 (158)
Q Consensus        26 t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~l~------g~L~~~I~~deS~w~i~-~~~l~i~L   91 (158)
                      +.+.-.|.+.+. +.+..||.|++..+.|.|..+-+     .-++.      -.|...|+++.-+-.+. +|.|.|.+
T Consensus        13 ~~~~f~v~ldv~-gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea   89 (91)
T cd06480          13 SSEPWKVCVNVH-SFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA   89 (91)
T ss_pred             CCCcEEEEEEeC-CCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence            344556777775 88999999999999999965411     01211      24888889998888888 67787764

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
2rh0_B	157	Crystal Structure Of Nudc Domain-containing Protein		2e-22
1wfi_A	131	Nuclear Move Domain Of Nuclear Distribution Gene C		6e-08
2cr0_A	121	Solution Structure Of Nuclear Move Domain Of Nuclea		9e-08
3qor_A	121	Crystal Structure Of Human Nuclear Migration Protei		4e-07
3qor_C	121	Crystal Structure Of Human Nuclear Migration Protei		7e-07
2o30_A	131	Nuclear Movement Protein From E. Cuniculi Gb-M1 Len		2e-04

>pdb|2RH0|B Chain B, Crystal Structure Of Nudc Domain-containing Protein 2 (13542905) From Mus Musculus At 1.95 A Resolution Length = 157

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 8   EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
           E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  
Sbjct: 3   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKG 61
Query: 68  ELTCPVKTDSSFWTLEDDV---MHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
           +L      D   WTLED     + +T TKRD    W S +  +   DP+V DQ Q++L L
Sbjct: 62  KLFDSTIADEGTWTLEDRKXVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQXQRKLTL 121
Query: 125 QRFQEENPGFDFSQAQFTGS 144
           +RFQ+ENPGFDFS A+ +G+
Sbjct: 122 ERFQKENPGFDFSGAEISGN 141

>pdb|1WFI|A Chain A, Nuclear Move Domain Of Nuclear Distribution Gene C Homolog Length = 131

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 21  FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS 78
           + W QTL E+++ +   +   +  K     IQ +H+ +G+KG PP ++ EL   VK + S
Sbjct: 10  YRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEES 69
Query: 79  FWTLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
            W +ED  V+ + L K +K + W   +    +++    + E  +L
Sbjct: 70  SWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKL 114

>pdb|2CR0|A Chain A, Solution Structure Of Nuclear Move Domain Of Nuclear Distribution Gene C Length = 121

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 14  LHNGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
           L NG  +  + W QTL E+++ +   +   +  K     IQ +H+ +G+KG PP ++ EL
Sbjct: 11  LGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGEL 70
Query: 70  TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTW 100
              VK + S W +ED  V+ + L K +K + W
Sbjct: 71  YNEVKVEESSWLIEDGKVVTVHLEKINKMEWW 102

>pdb|3QOR|A Chain A, Crystal Structure Of Human Nuclear Migration Protein Nudc Length = 121

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 14  LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
           L NG  +  + W QTL E+++ +    N  +  K     IQ +H+ +G+KG P  ++ EL
Sbjct: 10  LGNGADLPNYRWTQTLSELDLAVPFXVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGEL 69
Query: 70  TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWA 101
              VK + S W + D  V+ + L K +K + W+
Sbjct: 70  YNEVKVEESSWLIADGAVVTVHLEKINKMEWWS 102

>pdb|3QOR|C Chain C, Crystal Structure Of Human Nuclear Migration Protein Nudc Length = 121

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 14  LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
           L NG  +  + W QTL E+++ +    N  +  K     IQ +H+ +G+KG P  ++ EL
Sbjct: 10  LGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGEL 69
Query: 70  TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWA 101
              VK + S W + D  V+ + L K +K + W+
Sbjct: 70  YNEVKVEESSWLIADGAVVTVHLEKINKMEWWS 102

>pdb|2O30|A Chain A, Nuclear Movement Protein From E. Cuniculi Gb-M1 Length = 131

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
           + WDQ L+EINI   +  +  S     +   K I +  +G    ++ EL   V   S +W
Sbjct: 7   YTWDQELNEINIQFPVTGDADSSAIKIRXVGKKICVKNQG-EIVIDGELLHEVDVSSLWW 65
Query: 81  TLEDDVMHITLTKRDKGQTWASPIMGQGQLD 111
            +  DV+ + +TK+ + + W S ++G   +D
Sbjct: 66  VINGDVVDVNVTKK-RNEWWDSLLVGSESVD 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	3e-52
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	8e-32
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	6e-28
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	1e-25
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	7e-22
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	3e-15
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	2e-06
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	3e-05

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Length = 131

 Score =  109 bits (274), Expect = 8e-32
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 5/112 (4%)

Query: 16  NGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTC 71
           +G +   + W QTL E+++ +   +   +  K     IQ +H+ +G+KG PP ++ EL  
Sbjct: 3   SGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYN 62

Query: 72  PVKTDSSFWTLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
            VK + S W +ED  V+ + L K +K + W   +    +++    + E  +L
Sbjct: 63  EVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKL 114

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Length = 121

 Score = 99.6 bits (248), Expect = 6e-28
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 10/123 (8%)

Query: 1   MAEKLAPEKRHRFLHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIEL 56
            + KL P        NG  +  + W QTL E+++ +    N  +  K     IQ +H+ +
Sbjct: 2   SSSKLKPNL-----GNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRV 56

Query: 57  GIKGNPPYLNHELTCPVKTDSSFWTLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVT 115
           G+KG P  ++ EL   VK + S W + D  V+ + L K +K + W+  +    +++    
Sbjct: 57  GLKGQPAIIDGELYNEVKVEESSWLIADGAVVTVHLEKINKMEWWSRLVSSDPEINTKKI 116

Query: 116 DQE 118
           + E
Sbjct: 117 NPE 119

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131

 Score = 93.8 bits (233), Expect = 1e-25
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
           + WDQ L+EINI   +  +  S     ++  K I +  +G    ++ EL   V   S +W
Sbjct: 7   YTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQG-EIVIDGELLHEVDVSSLWW 65

Query: 81  TLEDDVMHITLTKRDKGQTWASPIMGQGQLD 111
            +  DV+ + +TK+ + + W S ++G   +D
Sbjct: 66  VINGDVVDVNVTKK-RNEWWDSLLVGSESVD 95

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Length = 124

 Score = 84.3 bits (208), Expect = 7e-22
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 15  HNGQTV--FEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGIK---GNPPYLNHE 68
           +NG     + W Q   ++ + + +P +V   KQ    + S  I + +    G    +  +
Sbjct: 14  YNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGK 73

Query: 69  LTCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLD 111
           LT  + T+SS W+LE    + + L+K  +   W + + G+  +D
Sbjct: 74  LTHKINTESSLWSLEPGKCVLVNLSKVGE-YWWNAILEGEEPID 116

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 67.0 bits (163), Expect = 3e-15
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 21  FEWDQTLDEINIYINLP--PNVHSKQFYCKIQSKHIELGIKG----NPPYLNHELTCPVK 74
           + WDQ+   + IYI L     V ++        +  +L +K     +   + + L  P+ 
Sbjct: 23  YGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPIS 82

Query: 75  TDSSFWTLEDDVMHITLTKRDKGQTWAS 102
            + S   ++ D + I   K+ +   W  
Sbjct: 83  VEGSSKKVKTDTVLILCRKKVENTRWDY 110

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 114

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDS 77
           ++W QT  ++ I + +  NV       +   K +   +K   G    L  EL  P+  + 
Sbjct: 12  YDWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ 70

Query: 78  SFWTLEDDVMHITLTKRDKGQTWAS 102
           S + +    + I L K +  + W  
Sbjct: 71  STFKVLSTKIEIKLKKPEAVR-WEK 94

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Length = 92

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDS 77
            E+ Q  +E+ + +     +  +        + + + I+    +  YL   L   +  D 
Sbjct: 5   HEYYQKPEEVVVTVFAK-GIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDK 63

Query: 78  SFWTLEDDVMHITLTKRDKGQTWAS 102
             + +    + I L K D    WAS
Sbjct: 64  CKYEVLSTKIEICLAKADIIT-WAS 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	100.0
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	99.96
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	99.95
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	99.95
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	99.94
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	99.89
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	99.87
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	99.84
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	99.82
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	99.8
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	99.76
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	99.74
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	98.75
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	98.63
4fei_A	102	Heat shock protein-related protein; stress respons	98.31
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	98.28
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	98.01
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	97.96
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	97.86
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	97.65
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	97.6
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	97.48
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	97.42
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	97.05
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	96.65
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	93.63

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=99.96  E-value=3e-29  Score=182.42  Aligned_cols=100  Identities=29%  Similarity=0.580  Sum_probs=93.2

Q ss_pred             ccCC--CCcEEEEeeCCEEEEEEEcCCC--CCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeCC-eEE
Q 031527           14 LHNG--QTVFEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMH   88 (158)
Q Consensus        14 ~~ng--~~~Y~W~Qt~~~V~I~i~lp~~--~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~-~l~   88 (158)
                      .+||  .++|.|+||.++|+|+|+||++  ++++||.|+|++++|+|+++|.+++++|+||++|++++|+|+++++ .|+
T Consensus        10 ~~nG~~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~~~g~L~~~I~~deS~w~i~~~~~i~   89 (121)
T 3qor_A           10 LGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIADGAVVT   89 (121)
T ss_dssp             TTSSCBCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETTSCCSEEEEBSSCBCGGGCEEEEETTTEEE
T ss_pred             CCCCCcCCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcCcceEEeccccccccccccEEEEcCCCEEE
Confidence            4566  4789999999999999999998  8999999999999999999997789999999999999999999996 899


Q ss_pred             EEEEecCCCCCCCCCcCCCCCCCCC
Q 031527           89 ITLTKRDKGQTWASPIMGQGQLDPY  113 (158)
Q Consensus        89 i~L~K~~~~~~W~~L~~~~~~id~~  113 (158)
                      |+|+|++++.||++|++++++||..
T Consensus        90 i~L~K~~~~~~W~~L~~~~~~id~~  114 (121)
T 3qor_A           90 VHLEKINKMEWWSRLVSSDPEINTK  114 (121)
T ss_dssp             EEEEBSSSSCCCSCSBTTSCCBCGG
T ss_pred             EEEEECCCCCCChhhhcCCCCCccc
Confidence            9999998878999999999998854

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=99.95  E-value=8.8e-28  Score=176.54  Aligned_cols=100  Identities=28%  Similarity=0.577  Sum_probs=92.8

Q ss_pred             cCC--CCcEEEEeeCCEEEEEEEcCCC--CCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeCC-eEEE
Q 031527           15 HNG--QTVFEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHI   89 (158)
Q Consensus        15 ~ng--~~~Y~W~Qt~~~V~I~i~lp~~--~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~-~l~i   89 (158)
                      +||  .++|.|+||.++|+|+|+||++  ++++||.|+|++++|+|+++|.+++++|+||++|++++|+|+++++ .|+|
T Consensus         2 ~ng~~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg~~~~~~~~L~~~I~~e~s~w~i~~~k~v~i   81 (131)
T 1wfi_A            2 SSGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTV   81 (131)
T ss_dssp             CCSSSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTTCEEEEETTTEEEE
T ss_pred             CCCCCCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEECCceEEEecccccccccccCEEEEcCCCEEEE
Confidence            677  4799999999999999999988  8999999999999999999987789999999999999999999997 6999


Q ss_pred             EEEecCCCCCCCCCcCCCCCCCCCc
Q 031527           90 TLTKRDKGQTWASPIMGQGQLDPYV  114 (158)
Q Consensus        90 ~L~K~~~~~~W~~L~~~~~~id~~~  114 (158)
                      +|+|++++.||++|++++++||+..
T Consensus        82 ~L~K~~~~~~W~~L~~~~~~id~~k  106 (131)
T 1wfi_A           82 HLEKINKMEWWNRLVTSDPEINTKK  106 (131)
T ss_dssp             EEEBSSSCCCCSCSBSSCCSCCCSS
T ss_pred             EEEECCCCCCChhhhcCCCCCCccE
Confidence            9999988779999999999888643

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=99.95  E-value=2.2e-27  Score=173.01  Aligned_cols=105  Identities=23%  Similarity=0.456  Sum_probs=94.2

Q ss_pred             cccccccCCC--CcEEEEeeCCEEEEEEEcCCCC-CCCceEEEeeccEEEEEec---CCCceecCCCCCCcccCCceeEe
Q 031527            9 KRHRFLHNGQ--TVFEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTL   82 (158)
Q Consensus         9 ~~~~~~~ng~--~~Y~W~Qt~~~V~I~i~lp~~~-~~kdv~V~i~~~~l~v~v~---g~~~~l~g~L~~~I~~deS~w~i   82 (158)
                      .++...|||.  ++|.|+||.++|+|+|+||+++ +++||.|+|++++|+|+++   +.+++++++||++|++++|+|++
T Consensus         8 ~~~~~~~nG~~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~~~L~~~I~~e~S~w~i   87 (124)
T 1wgv_A            8 QKNPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSL   87 (124)
T ss_dssp             CSCSSSSSSBCCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEE
T ss_pred             ccCCCccCCCcCCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccCCCceEEcccccCcCCCcCCEEEE
Confidence            3455678885  6999999999999999999998 9999999999999999995   44468999999999999999999


Q ss_pred             eCCe-EEEEEEecCCCCCCCCCcCCCCCCCCCc
Q 031527           83 EDDV-MHITLTKRDKGQTWASPIMGQGQLDPYV  114 (158)
Q Consensus        83 ~~~~-l~i~L~K~~~~~~W~~L~~~~~~id~~~  114 (158)
                      ++++ |+|+|+|++. .||++|++++++||+..
T Consensus        88 ~~~k~v~i~L~K~~~-~~W~~L~~~~~~id~~k  119 (124)
T 1wgv_A           88 EPGKCVLVNLSKVGE-YWWNAILEGEEPIDIDS  119 (124)
T ss_dssp             CTTSEEEEEECBSSS-CCCSCSBTTSCCCSCCC
T ss_pred             eCCCEEEEEEEECCC-CCCcCcccCCCccChhh
Confidence            9987 9999999975 79999999999999753

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=99.94  E-value=1.8e-27  Score=175.04  Aligned_cols=99  Identities=25%  Similarity=0.500  Sum_probs=78.9

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeCCeEEEEEEecCCC
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKG   97 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~~~   97 (158)
                      +++|.|+||.++|+|+|+||++++++|+.|+|++++|+|+++|.+ +++|+||++|++++|+|++++++|+|+|+|+ .+
T Consensus         4 ~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~g~~-~~~~~L~~~I~~e~S~w~i~~~kv~i~L~K~-~~   81 (131)
T 2o30_A            4 EAKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQGEI-VIDGELLHEVDVSSLWWVINGDVVDVNVTKK-RN   81 (131)
T ss_dssp             -CCCEEEEETTEEEEEEECC---CCSCEEEEEETTEEEEEETTEE-EEEEEBSSCEEEEEEEEEEETTEEEEEEEES-SC
T ss_pred             CCcEEEEecCCEEEEEEECCCCCCccceEEEEECCEEEEEECCEe-eEccccccccccccCEEEEeCCEEEEEEEEC-CC
Confidence            578999999999999999999999999999999999999999875 9999999999999999999999999999999 55


Q ss_pred             CCCCCCcCCCCCCCCCccHHH
Q 031527           98 QTWASPIMGQGQLDPYVTDQE  118 (158)
Q Consensus        98 ~~W~~L~~~~~~id~~~~de~  118 (158)
                      .||++|++++++||+...+..
T Consensus        82 ~~W~~L~~~~~~id~~k~~~e  102 (131)
T 2o30_A           82 EWWDSLLVGSESVDVQKLAEN  102 (131)
T ss_dssp             CCCSCSBC-------------
T ss_pred             CCCccccCCCCCCCHhHcCcc
Confidence            899999999999887654443

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.89  E-value=5.5e-23  Score=146.99  Aligned_cols=97  Identities=20%  Similarity=0.295  Sum_probs=82.2

Q ss_pred             CCCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec---CCCceecCCCCCCcccCCceeEeeCCeEEEEEEe
Q 031527           17 GQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTK   93 (158)
Q Consensus        17 g~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~---g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K   93 (158)
                      +.++|.|+||.++|+|+|.+| +++++++.|+|++++|+|.+.   +..+.++++||++|++++|+|++.+++|+|+|+|
T Consensus         8 ~~~~~~W~Qt~~~V~v~i~l~-~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~e~s~~~~~~~~l~i~L~K   86 (114)
T 1rl1_A            8 SKIKYDWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKK   86 (114)
T ss_dssp             CCCCEEEEECSSEEEEEECCC-SCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEEC
T ss_pred             CCCCccEEeCCCEEEEEEEeC-CCCHHHCEEEEEcCEEEEEEEeCCCcEEEEEeeCCCcCCccccEEEEECCEEEEEEEc
Confidence            467899999999999999998 788899999999999999886   3446799999999999999999999999999999


Q ss_pred             cCCCCCCCCCcCCCCCCCCCcc
Q 031527           94 RDKGQTWASPIMGQGQLDPYVT  115 (158)
Q Consensus        94 ~~~~~~W~~L~~~~~~id~~~~  115 (158)
                      ++++ ||++|.+++++||+...
T Consensus        87 ~~~~-~W~~L~~~~~~~~~~~i  107 (114)
T 1rl1_A           87 PEAV-RWEKLEGQGDVPTPKQF  107 (114)
T ss_dssp             SSCC-CCSSSBTTC--------
T ss_pred             CCCC-cCccccccCCccCCccc
Confidence            9885 99999999999987543

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=99.87  E-value=1.2e-21  Score=134.60  Aligned_cols=87  Identities=20%  Similarity=0.245  Sum_probs=79.3

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC---CCceecCCCCCCcccCCceeEeeCCeEEEEEEec
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g---~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~   94 (158)
                      .++|.|+||.++|+|+|.+| ++.++++.|+|++++|+|.+.+   ..+.++++||++|++++|+|++.+++|+|+|+|+
T Consensus         2 ~~~~~W~Qt~~~V~v~i~~~-~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~   80 (92)
T 2xcm_C            2 KYRHEYYQKPEEVVVTVFAK-GIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAKA   80 (92)
T ss_dssp             CSEEEEEEETTEEEEEEECC-SCCGGGEEEEECSSBEEEEECCTTSCCEEECCBBSSCBCGGGCEEEECSSCEEEEEEBS
T ss_pred             CccccEEeCCCEEEEEEEEC-CCChHHeEEEEECCEEEEEEEcCCCcEEEEeeEcCCccCchhEEEEEECCEEEEEEEcC
Confidence            57899999999999999986 7889999999999999999874   3467999999999999999999999999999999


Q ss_pred             CCCCCCCCCcCC
Q 031527           95 DKGQTWASPIMG  106 (158)
Q Consensus        95 ~~~~~W~~L~~~  106 (158)
                      +++ +|++|.+.
T Consensus        81 ~~~-~W~~L~~~   91 (92)
T 2xcm_C           81 DII-TWASLEHG   91 (92)
T ss_dssp             SSC-CCSCSBTT
T ss_pred             CCC-cchhcccC
Confidence            885 99999753

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=99.84  E-value=3.7e-21  Score=140.20  Aligned_cols=88  Identities=16%  Similarity=0.208  Sum_probs=79.7

Q ss_pred             cEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEec----CCCceecCCCCCCcccCCceeEeeCCeEEEEEEecC
Q 031527           20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK----GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRD   95 (158)
Q Consensus        20 ~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~----g~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~~   95 (158)
                      +|.|+||.+.|+|+|.+|.   ++++.|+|++++|+|++.    |..+.++++||++|++++|+|++.+++|+|+|+|++
T Consensus         5 ~~~W~Qt~~~V~ltI~~~~---~~~~~V~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~~e~S~~~v~~~kiei~L~K~~   81 (125)
T 1ejf_A            5 SAKWYDRRDYVFIEFCVED---SKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGE   81 (125)
T ss_dssp             CEEEEECSSEEEEEECCTT---EEEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEESS
T ss_pred             ceeEEeCCCEEEEEEEecC---CCceEEEEECCEEEEEEEeCCCCceEEEEEEccceeccccCEEEECCCEEEEEEEECC
Confidence            8999999999999999984   589999999999999875    334679999999999999999999999999999998


Q ss_pred             CCCCCCCCcCCCCCC
Q 031527           96 KGQTWASPIMGQGQL  110 (158)
Q Consensus        96 ~~~~W~~L~~~~~~i  110 (158)
                      ++.||++|+++++++
T Consensus        82 ~~~~W~rL~~~~~K~   96 (125)
T 1ejf_A           82 SGQSWPRLTKERAKL   96 (125)
T ss_dssp             TTCCCSSSBSSCCCC
T ss_pred             CCCCCCceecCCCcc
Confidence            767999999998764

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=8.4e-20  Score=133.26  Aligned_cols=90  Identities=19%  Similarity=0.311  Sum_probs=79.6

Q ss_pred             CCCcEEEEeeCCEEEEEEEcCCCC---CCCceEEEeeccEEEEEecC---CCceecC-CCCCCcccCCceeEeeCCeEEE
Q 031527           17 GQTVFEWDQTLDEINIYINLPPNV---HSKQFYCKIQSKHIELGIKG---NPPYLNH-ELTCPVKTDSSFWTLEDDVMHI   89 (158)
Q Consensus        17 g~~~Y~W~Qt~~~V~I~i~lp~~~---~~kdv~V~i~~~~l~v~v~g---~~~~l~g-~L~~~I~~deS~w~i~~~~l~i   89 (158)
                      ..++|.|+||.++|+|+|+++ ++   +++++.|+|++++|+|.+++   ..+.++. +||++|++++|+|++.+++|+|
T Consensus        19 ~~~~y~W~Qt~~~V~i~I~l~-~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVei   97 (127)
T 1x5m_A           19 KISNYGWDQSDKFVKIYITLT-GVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLI   97 (127)
T ss_dssp             ECCSCEEEEETTEEEEEEECT-TTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTEEEE
T ss_pred             CccEEEEEcCCCEEEEEEEeC-CCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCEEEE
Confidence            356899999999999999998 55   78999999999999999863   3456887 5999999999999999999999


Q ss_pred             EEEecCCCCCCCCCcCCC
Q 031527           90 TLTKRDKGQTWASPIMGQ  107 (158)
Q Consensus        90 ~L~K~~~~~~W~~L~~~~  107 (158)
                      +|+|++++.||++|.+++
T Consensus        98 ~L~K~~~~~~W~~L~~~~  115 (127)
T 1x5m_A           98 LCRKKVENTRWDYLTQVE  115 (127)
T ss_dssp             EEECSSSSCCCSSSBHHH
T ss_pred             EEEECCCCCCCCcccccc
Confidence            999998766999998654

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.80  E-value=2.2e-19  Score=132.60  Aligned_cols=100  Identities=9%  Similarity=0.123  Sum_probs=85.7

Q ss_pred             CcccccccccCCCCcEEEEee-CCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC---------------CceecCCC
Q 031527            6 APEKRHRFLHNGQTVFEWDQT-LDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN---------------PPYLNHEL   69 (158)
Q Consensus         6 ~~~~~~~~~~ng~~~Y~W~Qt-~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~---------------~~~l~g~L   69 (158)
                      .|+..........++|.|+|| .++|+|+|.++ ++.++++.|+|++++|+|.+++.               .+.++++|
T Consensus         7 ~~~~~~~~~~~~~~r~~W~Qt~~~~V~vtI~~k-~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L   85 (134)
T 1wh0_A            7 GVDEPESMVNLAFVKNDSYEKGPDSVVVHVYVK-EICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKL   85 (134)
T ss_dssp             SSCCGGGSEEESCCCEEEEEETTTEEEEEEECC-SBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEB
T ss_pred             CCcCCcccccccCCCeEEEcCCCCEEEEEEEeC-CCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccc
Confidence            455555555666789999999 99999999996 68889999999999999988632               35688899


Q ss_pred             CCCcccCCceeEeeCCeEEEEEEecCCCCCCCCCcCCC
Q 031527           70 TCPVKTDSSFWTLEDDVMHITLTKRDKGQTWASPIMGQ  107 (158)
Q Consensus        70 ~~~I~~deS~w~i~~~~l~i~L~K~~~~~~W~~L~~~~  107 (158)
                      |++|+|++|+|++.+++|+|+|+|++. .+|++|.+..
T Consensus        86 ~~~I~pe~S~~~v~~~kIeI~L~K~e~-~~W~~L~~~~  122 (134)
T 1wh0_A           86 RNLIEPEQCTFCFTASRIDICLRKRQS-QRWGGLEAPA  122 (134)
T ss_dssp             SSCEEEEEEEEEECSSEEEEEEEESSS-CCCSCSBCCC
T ss_pred             cccCCchhCEEEEeCCEEEEEEEECCC-CccccccccC
Confidence            999999999999999999999999975 7999998654

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.7e-19  Score=131.94  Aligned_cols=91  Identities=14%  Similarity=0.225  Sum_probs=74.5

Q ss_pred             CCcEEEEeeCCE-------EEEEEEcCCCCCCCceEEEeeccEEEEEecC---------CCceecCCCCCCcccCCceeE
Q 031527           18 QTVFEWDQTLDE-------INIYINLPPNVHSKQFYCKIQSKHIELGIKG---------NPPYLNHELTCPVKTDSSFWT   81 (158)
Q Consensus        18 ~~~Y~W~Qt~~~-------V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g---------~~~~l~g~L~~~I~~deS~w~   81 (158)
                      .|.|.|+||.++       |+|+|.+|.   .+++.|+|++++|+|.+.+         ..+.++++||++|+|++|+|+
T Consensus         6 ~p~~~W~Q~~~~~~~~k~~V~ltI~~~~---~~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~~   82 (134)
T 2cg9_X            6 NPQVAWAQRSSTTDPERNYVLITVSIAD---CDAPELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHK   82 (134)
T ss_dssp             -----CBCCCEEECCCSSEEEEECCCSS---EESCCCCBCSSEEEECCEEC-------CEEBCEEEECSSCCCSSSEEEE
T ss_pred             CCCEEEEeCCCCcCCcCCEEEEEEEecC---CCceEEEEECCEEEEEEecccccCCccCceEEEEEEChhhccccccEEE
Confidence            478999999988       999999984   4699999999999998653         236789999999999999999


Q ss_pred             eeCCe-EEEEEEecCC-CCCCCCCcCCCCCCC
Q 031527           82 LEDDV-MHITLTKRDK-GQTWASPIMGQGQLD  111 (158)
Q Consensus        82 i~~~~-l~i~L~K~~~-~~~W~~L~~~~~~id  111 (158)
                      +.+++ |+|+|+|+++ +.||++|++++.++.
T Consensus        83 v~~~~~vei~L~K~~~~~~~W~rL~k~~~K~~  114 (134)
T 2cg9_X           83 VANGQHYFLKLYKKDLESEYWPRLTKEKVKYP  114 (134)
T ss_dssp             ECCC--CEEEEEECSSSSCCCSCSSSSCCCCS
T ss_pred             ECCCEEEEEEEEECCCCCCCCCceecCCCccC
Confidence            99998 9999999984 579999999887643

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.74  E-value=3.5e-18  Score=128.30  Aligned_cols=87  Identities=15%  Similarity=0.247  Sum_probs=77.0

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEee-ccEEEEEecC---CCceecCCCCCCcccCCceeEeeCCeEEEEEEe
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQ-SKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTK   93 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~-~~~l~v~v~g---~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K   93 (158)
                      +|+|.|+||.+.|+|+|.++.   .+++.|+|+ +++|+|.+.+   ..+.++++||++|+|+ |+|++.+++|+|+|+|
T Consensus         4 ~P~~~W~Qt~~~V~ltI~l~~---~~~v~V~~~~~~~l~~~~~~~~~~~y~~~l~L~~~Idpe-S~~~v~~~kIei~L~K   79 (150)
T 2kmw_A            4 NPEVLWAQRSDKVYLTVALPD---AKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTE-YRKNVGLRNIIFSIQK   79 (150)
T ss_dssp             CCCEEEEECSSEEEEEECCSS---EEEEEECCCTTEEEEEEEETTTTEEEEEEEEBSSCEEEE-EEEEEESSSEEEEEEE
T ss_pred             CCcEEEEeCCCEEEEEEEeCC---CCceEEEEecCCEEEEEEEcCCCceEEEEeEhhhccccc-ceEEecCCEEEEEEEE
Confidence            478999999999999999984   478999999 7899998763   3367889999999999 9999999999999999


Q ss_pred             cCCCCCCCCCcCCCCC
Q 031527           94 RDKGQTWASPIMGQGQ  109 (158)
Q Consensus        94 ~~~~~~W~~L~~~~~~  109 (158)
                      +++ .+|++|.+...+
T Consensus        80 ~e~-~~W~rL~k~~~K   94 (150)
T 2kmw_A           80 EER-SWWTRLLKSEEK   94 (150)
T ss_dssp             CCS-SCCSCSBSCCSS
T ss_pred             CCC-CcCcccccCCcc
Confidence            986 699999988765

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=98.75  E-value=4.8e-08  Score=71.61  Aligned_cols=83  Identities=18%  Similarity=0.279  Sum_probs=72.0

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCC--CCceEEEeeccEEEEEecCCCceecCCCCCCc-ccCCc--eeEeeCCeEEEEEE
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVH--SKQFYCKIQSKHIELGIKGNPPYLNHELTCPV-KTDSS--FWTLEDDVMHITLT   92 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~--~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I-~~deS--~w~i~~~~l~i~L~   92 (158)
                      +|+|+=+|+++.|.|.|.+| .++  ++++.+.+..+.+.+..+  +++|...|.++| +.+.|  +|-.+.+.+.|+|.
T Consensus         3 TP~F~itQd~e~viV~Ik~P-~~~~~~sdiei~v~~~~F~F~~~--PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLp   79 (134)
T 2k8q_A            3 TPRFSITQDEEFIFLKIFIS-NIRFSAVGLEIIIQENMIIFHLS--PYYLRLRFPHELIDDERSTAQYDSKDECINVKVA   79 (134)
T ss_dssp             CSEEEEEECSSEEEEEEECC-SSCCCSSSCCCEECSSSEEECSS--SSCEEECCSSCEECCSSCEEEEETTTTEEEEEEE
T ss_pred             CceEEEEECCCEEEEEEEcC-ccccCccccEEEEeCCEEEEecC--CeEEEecCCCeeecCCCcceeEeccCCEEEEEEe
Confidence            58899999999999999998 556  789999999999888876  688999999999 55544  56666789999999


Q ss_pred             ecCCCCCCCCC
Q 031527           93 KRDKGQTWASP  103 (158)
Q Consensus        93 K~~~~~~W~~L  103 (158)
                      |.++|+.++.|
T Consensus        80 K~~~Ge~F~dL   90 (134)
T 2k8q_A           80 KLNKNEYFEDL   90 (134)
T ss_dssp             ESSTTCCCSST
T ss_pred             CCCCCCCCCCc
Confidence            99999889877

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=98.63  E-value=5e-07  Score=64.38  Aligned_cols=84  Identities=17%  Similarity=0.221  Sum_probs=72.1

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCC-CCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCc---eeEeeCCeEEEEEEe
Q 031527           18 QTVFEWDQTLDEINIYINLPPN-VHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS---FWTLEDDVMHITLTK   93 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~-~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS---~w~i~~~~l~i~L~K   93 (158)
                      +|+|+=+|+++.|.|.|.+|.. ++++++.+.+..+.+.+.++  +++|...|.++|..++.   +|..+.+.+.|+|.|
T Consensus        17 TP~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~~--PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~lpK   94 (115)
T 3eud_A           17 TPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS--PYYLRLRFPHELIDDERSTAQYDSKDECINVKVAK   94 (115)
T ss_dssp             CCCEEEEECSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEET--TEEEEEECSSCEECSTTCEEEEETTTTEEEEEEEE
T ss_pred             CCcEEEEECCCEEEEEEEcCceecccCccEEEEeCCEEEEecC--CeEEEEecCcceecCCCcceEEeCCCcEEEEEEcC
Confidence            6899999999999999999842 23789999999999999886  68899999999955443   677778899999999


Q ss_pred             cCCCCCCCCC
Q 031527           94 RDKGQTWASP  103 (158)
Q Consensus        94 ~~~~~~W~~L  103 (158)
                      .++|+..+.|
T Consensus        95 ~~~GE~F~dL  104 (115)
T 3eud_A           95 LNKNEYFEDL  104 (115)
T ss_dssp             SSTTCCCCCT
T ss_pred             CcCCCcCCCc
Confidence            9998877766

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=98.31  E-value=5.9e-06  Score=57.21  Aligned_cols=78  Identities=12%  Similarity=0.245  Sum_probs=65.3

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC---CCc----------eecCCCCCCcccCCceeEeeC
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPP----------YLNHELTCPVKTDSSFWTLED   84 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g---~~~----------~l~g~L~~~I~~deS~w~i~~   84 (158)
                      .|.+.+.++.+.+.|.+.|| +++++||+|.+..+.|.|...-   ...          .-.-.|...|+++..+.++.+
T Consensus         6 ~P~~di~e~~~~~~v~~~lP-G~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~   84 (102)
T 4fei_A            6 TPAADWRDAGTHLDLLLDVP-GVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAG   84 (102)
T ss_dssp             CCCEEEEEETTEEEEEEECT-TCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEET
T ss_pred             cCcEEEEEcCCEEEEEEECC-CCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEEC
Confidence            48899999999999999998 8999999999999999986431   001          112358999999999999999


Q ss_pred             CeEEEEEEecCC
Q 031527           85 DVMHITLTKRDK   96 (158)
Q Consensus        85 ~~l~i~L~K~~~   96 (158)
                      |.|.|+|.|+++
T Consensus        85 GvL~I~lpK~~~   96 (102)
T 4fei_A           85 GVLTVRFEKLRP   96 (102)
T ss_dssp             TEEEEEEEBSSC
T ss_pred             CEEEEEEEccCc
Confidence            999999999865

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=98.28  E-value=6.2e-06  Score=56.63  Aligned_cols=77  Identities=13%  Similarity=0.266  Sum_probs=64.0

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCC-------ce---------e--cCCCCCCcccCCce
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP-------PY---------L--NHELTCPVKTDSSF   79 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~-------~~---------l--~g~L~~~I~~deS~   79 (158)
                      .|.+.+.++.+.+.|.+.|| |++++||+|.+..+.|.|...-..       .+         |  .-.|...|+++..+
T Consensus         4 ~P~~di~e~~~~~~v~~~lP-G~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~   82 (100)
T 3gla_A            4 VPRVDIKEEVNHFVLYADLP-GIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGIT   82 (100)
T ss_dssp             CCCEEEEECSSEEEEEEECT-TSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCE
T ss_pred             cCcEEEEECCCEEEEEEECC-CCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeE
Confidence            47899999999999999998 899999999999999999753110       01         1  23588999999999


Q ss_pred             eEeeCCeEEEEEEecC
Q 031527           80 WTLEDDVMHITLTKRD   95 (158)
Q Consensus        80 w~i~~~~l~i~L~K~~   95 (158)
                      .++.+|.|.|+|-|+.
T Consensus        83 A~~~~GvL~I~~pK~~   98 (100)
T 3gla_A           83 AAGRNGVLEIRIPKRP   98 (100)
T ss_dssp             EEEETTEEEEEEEBC-
T ss_pred             EEEeCCEEEEEEecCC
Confidence            9999999999999975

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=98.01  E-value=3.7e-05  Score=54.80  Aligned_cols=78  Identities=10%  Similarity=0.155  Sum_probs=65.3

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeec-cEEEEEecCCC-----c-------ee--cCCCCCCcccCCc-eeE
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQS-KHIELGIKGNP-----P-------YL--NHELTCPVKTDSS-FWT   81 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~-~~l~v~v~g~~-----~-------~l--~g~L~~~I~~deS-~w~   81 (158)
                      .|.+.+.++.+.+.|.+.|| |++++||+|.+.. +.|.|...-..     .       -|  .-.|...|+++.- +-+
T Consensus        24 ~P~~di~e~~~~~~v~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~  102 (123)
T 3aab_A           24 YPPVDMYEEGGYLVVVADLA-GFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGK  102 (123)
T ss_dssp             CSCEEEEEETTEEEEEEECC-SCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEE
T ss_pred             CCcEEEEEcCCEEEEEEECC-CCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeE
Confidence            48899999999999999998 8899999999999 99999765211     1       12  2368889999998 899


Q ss_pred             eeCCeEEEEEEecCC
Q 031527           82 LEDDVMHITLTKRDK   96 (158)
Q Consensus        82 i~~~~l~i~L~K~~~   96 (158)
                      +.+|.|.|+|-|+..
T Consensus       103 ~~~GvL~I~lPK~~~  117 (123)
T 3aab_A          103 YENGVLTIRIPIAGT  117 (123)
T ss_dssp             EETTEEEEEEEGGGE
T ss_pred             EcCCEEEEEEEcCCC
Confidence            999999999999764

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=97.96  E-value=7.3e-05  Score=55.70  Aligned_cols=78  Identities=18%  Similarity=0.239  Sum_probs=64.2

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCCC--------ce-----------ecCCCCCCcccCCc
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP--------PY-----------LNHELTCPVKTDSS   78 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~--------~~-----------l~g~L~~~I~~deS   78 (158)
                      .+++.+.++.+.+.|.+.|| |++++||+|.+..+.|.|...-..        .+           -.-.|...|+++.-
T Consensus        56 ~~pvdi~e~~~~~~v~~dlP-G~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i  134 (161)
T 4eld_A           56 FMPISIIEGDQHIKVIAWLP-GVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENA  134 (161)
T ss_dssp             CCCEEEEECSSEEEEEEECT-TCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGC
T ss_pred             ccceeEEEeCCEEEEEEECC-CCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccE
Confidence            34599999999999999998 889999999999999999653211        00           12258889999999


Q ss_pred             eeEeeCCeEEEEEEecCC
Q 031527           79 FWTLEDDVMHITLTKRDK   96 (158)
Q Consensus        79 ~w~i~~~~l~i~L~K~~~   96 (158)
                      +.++++|.|.|+|-|++.
T Consensus       135 ~A~~~nGvL~I~lpK~~~  152 (161)
T 4eld_A          135 SAKFENGVLSVILPKAES  152 (161)
T ss_dssp             EEEEETTEEEEEEEBCGG
T ss_pred             EEEEECCEEEEEEEcCCC
Confidence            999999999999999764

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=97.86  E-value=0.00011  Score=54.26  Aligned_cols=78  Identities=15%  Similarity=0.296  Sum_probs=63.9

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEee-ccEEEEEecCC-------Cce---------e--cCCCCCCcccCCc
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQ-SKHIELGIKGN-------PPY---------L--NHELTCPVKTDSS   78 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~-~~~l~v~v~g~-------~~~---------l--~g~L~~~I~~deS   78 (158)
                      .|.+.|.++.+.+.|.+.|| |++++||+|.+. .+.|.|...-.       ..+         |  .-.|...|+++.-
T Consensus        43 ~p~~di~e~~d~~~v~~dlP-Gv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i  121 (151)
T 1gme_A           43 NARMDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEV  121 (151)
T ss_dssp             GGCEEEEECSSEEEEEEECT-TCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGC
T ss_pred             CCceEEEEcCCEEEEEEECC-CCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccce
Confidence            57899999999999999998 899999999995 67999876311       011         1  2358889999988


Q ss_pred             eeEeeCCeEEEEEEecCC
Q 031527           79 FWTLEDDVMHITLTKRDK   96 (158)
Q Consensus        79 ~w~i~~~~l~i~L~K~~~   96 (158)
                      +-++.+|.|.|+|.|...
T Consensus       122 ~A~~~nGvL~I~lPK~~~  139 (151)
T 1gme_A          122 KAGLENGVLTVTVPKAEV  139 (151)
T ss_dssp             EEEEETTEEEEEEECCCC
T ss_pred             EEEEECCEEEEEEEccCc
Confidence            899999999999999764

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=97.65  E-value=0.00039  Score=48.40  Aligned_cols=76  Identities=17%  Similarity=0.270  Sum_probs=62.4

Q ss_pred             cEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC-----CCce----e--cCCCCCCcccCCceeEe-eCCeE
Q 031527           20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG-----NPPY----L--NHELTCPVKTDSSFWTL-EDDVM   87 (158)
Q Consensus        20 ~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g-----~~~~----l--~g~L~~~I~~deS~w~i-~~~~l   87 (158)
                      .-.+.++.+.+.|.+.|| |++++||+|.+..+.|.|...-     ..-+    |  .-.|...|+++.-+-++ .+|.|
T Consensus         4 ~~~i~e~~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL   82 (106)
T 3l1e_A            4 ISEVRSDRDKFVIFLDVK-HFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGML   82 (106)
T ss_dssp             SEEEEECSSEEEEEEECT-TSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEE
T ss_pred             ceEEEEcCCEEEEEEECC-CCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEE
Confidence            357889999999999998 8999999999999999987531     1111    2  23588899999999999 79999


Q ss_pred             EEEEEecCC
Q 031527           88 HITLTKRDK   96 (158)
Q Consensus        88 ~i~L~K~~~   96 (158)
                      .|+|-|..+
T Consensus        83 ~I~~PK~~~   91 (106)
T 3l1e_A           83 TFSGPKIPS   91 (106)
T ss_dssp             EEEEEBCCC
T ss_pred             EEEEEccCc
Confidence            999999865

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=97.60  E-value=0.00011  Score=50.66  Aligned_cols=75  Identities=12%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             EEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC------CCce---e--cCCCCCCcccCCceeEe-eCCeEE
Q 031527           21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG------NPPY---L--NHELTCPVKTDSSFWTL-EDDVMH   88 (158)
Q Consensus        21 Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g------~~~~---l--~g~L~~~I~~deS~w~i-~~~~l~   88 (158)
                      ..+.++.+.+.|.+.|| |++++|++|.+..+.|.|...-      ...+   |  .-.|...|+++.-+-++ .+|.|.
T Consensus         4 vdi~e~~~~~~v~~dlP-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~   82 (101)
T 2wj5_A            4 AQVPTDPGYFSVLLDVK-HFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLS   82 (101)
T ss_dssp             CCCCCCSSCEEEEEECT-TSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEE
T ss_pred             EEEEEeCCEEEEEEECC-CCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEE
Confidence            56789999999999998 8999999999999999886531      1111   2  23688999999999999 799999


Q ss_pred             EEEEecCC
Q 031527           89 ITLTKRDK   96 (158)
Q Consensus        89 i~L~K~~~   96 (158)
                      |+|-|...
T Consensus        83 I~lPK~~~   90 (101)
T 2wj5_A           83 IQATPASA   90 (101)
T ss_dssp             EEECBCCC
T ss_pred             EEEECCCc
Confidence            99999764

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=97.48  E-value=0.00051  Score=45.85  Aligned_cols=70  Identities=13%  Similarity=0.174  Sum_probs=56.6

Q ss_pred             EeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Cce----ec--CCCCCCcccCCceeEee-CCeEEEEE
Q 031527           24 DQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----LN--HELTCPVKTDSSFWTLE-DDVMHITL   91 (158)
Q Consensus        24 ~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~----l~--g~L~~~I~~deS~w~i~-~~~l~i~L   91 (158)
                      +++.+.+.|.+.|| +++++||+|.+..+.|.|...-.     .-+    |.  -.|...|+++.-+-++. +|.|.|+|
T Consensus         3 ~E~~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~l   81 (85)
T 3q9p_A            3 SHTADRWRVSLDVN-HFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEA   81 (85)
T ss_dssp             CCCCCEEEEEEECT-TTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEE
T ss_pred             cCcCCEEEEEEECC-CCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEE
Confidence            46889999999998 89999999999999999876411     011    22  25888999999999998 89999999


Q ss_pred             Eec
Q 031527           92 TKR   94 (158)
Q Consensus        92 ~K~   94 (158)
                      -|.
T Consensus        82 PK~   84 (85)
T 3q9p_A           82 PMP   84 (85)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            885

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=97.42  E-value=0.00029  Score=47.49  Aligned_cols=71  Identities=11%  Similarity=0.214  Sum_probs=54.1

Q ss_pred             eeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC-----CCce----e--cCCCCCCcccCCceeEe-eCCeEEEEEE
Q 031527           25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG-----NPPY----L--NHELTCPVKTDSSFWTL-EDDVMHITLT   92 (158)
Q Consensus        25 Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g-----~~~~----l--~g~L~~~I~~deS~w~i-~~~~l~i~L~   92 (158)
                      ++.+.+.|.+.|| |++++||+|.+..+.|.|...-     ...+    |  .-.|...|+++.-+-++ .+|.|.|+|.
T Consensus         3 ~~~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~p   81 (90)
T 2y1y_A            3 MEKDRFSVNLDVK-HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGP   81 (90)
T ss_dssp             ---CCEEEEEECT-TSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEEC
T ss_pred             cCCCEEEEEEECC-CCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEE
Confidence            4678899999998 8999999999999999887641     1111    2  23588899999889999 7999999999


Q ss_pred             ecCC
Q 031527           93 KRDK   96 (158)
Q Consensus        93 K~~~   96 (158)
                      |...
T Consensus        82 K~~~   85 (90)
T 2y1y_A           82 RKQV   85 (90)
T ss_dssp             BC--
T ss_pred             cCCC
Confidence            9753

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=97.05  E-value=0.0013  Score=49.78  Aligned_cols=75  Identities=13%  Similarity=0.203  Sum_probs=58.3

Q ss_pred             EEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-----Cce----e--cCCCCCCcccCCceeEe-eCCeEE
Q 031527           21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----L--NHELTCPVKTDSSFWTL-EDDVMH   88 (158)
Q Consensus        21 Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-----~~~----l--~g~L~~~I~~deS~w~i-~~~~l~   88 (158)
                      ..+.++.+.+.|.+.|| |++++||+|++..+.|.|..+-+     .-+    |  .-.|...|+++.-+-++ .+|.|.
T Consensus        66 ~dv~e~~d~~~v~~dlP-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~  144 (175)
T 2klr_A           66 SEMRLEKDRFSVNLDVK-HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLT  144 (175)
T ss_dssp             ---CCCCSEEEEEECCS-SCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEE
T ss_pred             eEEEEcCCeEEEEEECC-CCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEE
Confidence            57889999999999998 89999999999999998865311     011    2  23588999999999999 689999


Q ss_pred             EEEEecCC
Q 031527           89 ITLTKRDK   96 (158)
Q Consensus        89 i~L~K~~~   96 (158)
                      |+|-|+..
T Consensus       145 I~lPK~~~  152 (175)
T 2klr_A          145 VNGPRKQV  152 (175)
T ss_dssp             EEEECC--
T ss_pred             EEEECCCC
Confidence            99999754

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=96.65  E-value=0.0068  Score=49.91  Aligned_cols=78  Identities=14%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             CCcEEEEeeCC----EEEEEEEcCCCCCCCceEEEeeccEEEEEecCCC----------ceecCCCCCCcccCCceeEee
Q 031527           18 QTVFEWDQTLD----EINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP----------PYLNHELTCPVKTDSSFWTLE   83 (158)
Q Consensus        18 ~~~Y~W~Qt~~----~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~~----------~~l~g~L~~~I~~deS~w~i~   83 (158)
                      .|....+++.+    .+.|.+.|| |++++||+|.+..+.|.|..+-+.          ..-.-.|...|+++.-+-++.
T Consensus        98 ~p~vDi~E~~~dgk~~~~v~~dlP-G~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~  176 (314)
T 2bol_A           98 DFLKDAYEVGKDGRLHFKVYFNVK-NFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATIT  176 (314)
T ss_dssp             GGGGGCEEECTTSSEEEEEEEECT-TCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEEC
T ss_pred             CCccceEEcCCCCceEEEEEEECC-CCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEe
Confidence            35667778888    899999998 899999999999999999764210          111235889999999999999


Q ss_pred             -CCeEEEEEEecCC
Q 031527           84 -DDVMHITLTKRDK   96 (158)
Q Consensus        84 -~~~l~i~L~K~~~   96 (158)
                       +|.|.|+|-|..+
T Consensus       177 ~nGVL~I~lPK~~~  190 (314)
T 2bol_A          177 TDDVLVIEAPVNEP  190 (314)
T ss_dssp             SSSEEEEEEEBSSC
T ss_pred             CCCEEEEEEeccCc
Confidence             8999999999764

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=93.63  E-value=0.2  Score=41.13  Aligned_cols=69  Identities=9%  Similarity=0.048  Sum_probs=52.5

Q ss_pred             eCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC----CCc----e----ec--CCCCCCcccCCceeEeeCCeEEEEE
Q 031527           26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG----NPP----Y----LN--HELTCPVKTDSSFWTLEDDVMHITL   91 (158)
Q Consensus        26 t~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g----~~~----~----l~--g~L~~~I~~deS~w~i~~~~l~i~L   91 (158)
                      +.+.+.|.+.|.++++++||+|++..+.|+|...-    +..    .    |.  -.|...|+++.-+-++.+|.|.|+|
T Consensus       231 ~~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~dGvL~i~~  310 (314)
T 2bol_A          231 GSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEA  310 (314)
T ss_dssp             SCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEEETTEEEEEE
T ss_pred             CCcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEEeCCEEEEEE
Confidence            44578899998338999999999999999986531    010    0    11  2488889999988899999999999


Q ss_pred             Eec
Q 031527           92 TKR   94 (158)
Q Consensus        92 ~K~   94 (158)
                      -|.
T Consensus       311 Pk~  313 (314)
T 2bol_A          311 PLF  313 (314)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d1wfia_	131	b.15.1.4 (A:) Nuclear migration protein nudC {Mous	6e-30
d1wgva_	124	b.15.1.4 (A:) NudC domain containing protein 3, NU	7e-23
d1rl1a_	92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	3e-16
d1ejfa_	110	b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien	7e-11
d1wh0a_	134	b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolas	0.003

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Length = 131

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (259), Expect = 6e-30
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 5/112 (4%)

Query: 16  NGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTC 71
           +G +   + W QTL E+++ +   +   +  K     IQ +H+ +G+KG PP ++ EL  
Sbjct: 3   SGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYN 62

Query: 72  PVKTDSSFWTLED-DVMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
            VK + S W +ED  V+ + L K +K + W   +    +++    + E  +L
Sbjct: 63  EVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKL 114

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (211), Expect = 7e-23
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 21  FEWDQTLDEINIYINLPPN-VHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTD 76
           + W Q   ++ + + +P + V  KQ    + S  I + +         +  +LT  + T+
Sbjct: 22  YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 81

Query: 77  SSFWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDP 112
           SS W+LE     +    +     W + + G+  +D 
Sbjct: 82  SSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDI 117

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (165), Expect = 3e-16
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDS 77
           ++W QT  ++ I + +  NV       +   K +   +K   G    L  EL  P+  + 
Sbjct: 5   YDWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQ 63

Query: 78  SFWTLEDDVMHITLTKRDKGQTWAS 102
           S + +    + I L K +    W  
Sbjct: 64  STFKVLSTKIEIKLKKPE-AVRWEK 87

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 7e-11
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 3/98 (3%)

Query: 21  FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIEL--GIKGNPPYLNHELTCPVKTDSS 78
            +W    D + I   +  +        +          G          +L   +  + S
Sbjct: 6   AKWYDRRDYVFIEFCVE-DSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDS 64

Query: 79  FWTLEDDVMHITLTKRDKGQTWASPIMGQGQLDPYVTD 116
                D  +   L K + GQ+W      + +L+    D
Sbjct: 65  KHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVD 102

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 9/95 (9%), Positives = 28/95 (29%), Gaps = 17/95 (17%)

Query: 23  WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG--NPPYLNH------------- 67
           +++  D + +++ +   +         + +   L  +         H             
Sbjct: 25  YEKGPDSVVVHVYVK-EICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQV 83

Query: 68  ELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWAS 102
           +L   ++ +   +      + I L KR   + W  
Sbjct: 84  KLRNLIEPEQCTFCFTASRIDICLRKRQSQR-WGG 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	99.94
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	99.93
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	99.86
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	99.84
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	99.66
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	97.87
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	97.6

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.7e-27  Score=171.81  Aligned_cols=102  Identities=27%  Similarity=0.567  Sum_probs=92.5

Q ss_pred             CC--CCcEEEEeeCCEEEEEEEc--CCCCCCCceEEEeeccEEEEEecCCCceecCCCCCCcccCCceeEeeCC-eEEEE
Q 031527           16 NG--QTVFEWDQTLDEINIYINL--PPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHIT   90 (158)
Q Consensus        16 ng--~~~Y~W~Qt~~~V~I~i~l--p~~~~~kdv~V~i~~~~l~v~v~g~~~~l~g~L~~~I~~deS~w~i~~~-~l~i~   90 (158)
                      ||  +++|+|+||.++|.|+|++  |.+++++||.|.|++++|+|.+++.+++++|+||++|++++|+|+++++ .|+|+
T Consensus         3 ~G~~~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~~~~~ll~g~L~~~I~~des~W~ied~~~l~i~   82 (131)
T d1wfia_           3 SGSSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKVVTVH   82 (131)
T ss_dssp             CSSSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETTSCCSBCSCBSSCBCSTTCEEEEETTTEEEEE
T ss_pred             CCCCCCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEcCCceeecccccCcccccccEEEEeCCCEEEEE
Confidence            55  5899999999999999876  5678999999999999999999987789999999999999999999986 57999


Q ss_pred             EEecCCCCCCCCCcCCCCCCCCCccHH
Q 031527           91 LTKRDKGQTWASPIMGQGQLDPYVTDQ  117 (158)
Q Consensus        91 L~K~~~~~~W~~L~~~~~~id~~~~de  117 (158)
                      |+|+.++.||++|++|+++||+...++
T Consensus        83 L~K~~~~~~W~~l~~gd~~id~~~~~~  109 (131)
T d1wfia_          83 LEKINKMEWWNRLVTSDPEINTKKINP  109 (131)
T ss_dssp             EEBSSSCCCCSCSBSSCCSCCCSSSSC
T ss_pred             EEECCCCccCHHHcCCCCCCCHhHcCc
Confidence            999988889999999999999876544

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.7e-26  Score=165.23  Aligned_cols=100  Identities=21%  Similarity=0.404  Sum_probs=85.8

Q ss_pred             ccCC--CCcEEEEeeCCEEEEEEEcCCC-CCCCceEEEeeccEEEEEecC---CCceecCCCCCCcccCCceeEeeCCeE
Q 031527           14 LHNG--QTVFEWDQTLDEINIYINLPPN-VHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVM   87 (158)
Q Consensus        14 ~~ng--~~~Y~W~Qt~~~V~I~i~lp~~-~~~kdv~V~i~~~~l~v~v~g---~~~~l~g~L~~~I~~deS~w~i~~~~l   87 (158)
                      +|||  .++|.|+||.++|+|+|+||++ ++++||.|+|++++|+|.+++   ..++++++||++|++++|+|+++++++
T Consensus        13 ~~nG~~~~~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~~~l~v~v~~~~~~~~~l~g~L~~~I~~deS~w~i~~~~~   92 (124)
T d1wgva_          13 SYNGAVRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKC   92 (124)
T ss_dssp             SSSSBCCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSE
T ss_pred             CcCCcCCCCeEEEeECCEEEEEEEeCCCCcchhhEEEEEEeCEEEEEEeccCCcceEEeCcccCcccccccEEEEeCCCE
Confidence            4677  4689999999999999999987 578999999999999999875   246899999999999999999999876


Q ss_pred             EEEEEecCCCCCCCCCcCCCCCCCCC
Q 031527           88 HITLTKRDKGQTWASPIMGQGQLDPY  113 (158)
Q Consensus        88 ~i~L~K~~~~~~W~~L~~~~~~id~~  113 (158)
                      ++.|.|+..+.||++|++|+++||..
T Consensus        93 ~i~~lkK~~~~~W~~L~~ge~~id~~  118 (124)
T d1wgva_          93 VLVNLSKVGEYWWNAILEGEEPIDID  118 (124)
T ss_dssp             EEEEECBSSSCCCSCSBTTSCCCSCC
T ss_pred             EEEEEEecCCCcChhhccCCccccCC
Confidence            55444444558999999999999864

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.4e-22  Score=134.80  Aligned_cols=86  Identities=20%  Similarity=0.310  Sum_probs=77.9

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecC---CCceecCCCCCCcccCCceeEeeCCeEEEEEEec
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g---~~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~   94 (158)
                      ..+|.|+||.++|+|+|++| ++.++++.|.|++++|+|.+.+   ..+.++++||++|+|++|+|++.+++|+|+|+|+
T Consensus         2 k~ry~W~Qt~~~V~i~i~~~-~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~~~~~kiei~L~K~   80 (92)
T d1rl1a_           2 KIKYDWYQTESQVVITLMIK-NVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKP   80 (92)
T ss_dssp             CCCEEEEECSSEEEEEECCC-SCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEECS
T ss_pred             CCceeEEeCCCEEEEEEEeC-CCChHheEEEEecCEEEEEEEcCCCcEEEEEEEcCcccCchhcEEEEeCCEEEEEEEEC
Confidence            46899999999999999996 7889999999999999998763   3467999999999999999999999999999999


Q ss_pred             CCCCCCCCCcC
Q 031527           95 DKGQTWASPIM  105 (158)
Q Consensus        95 ~~~~~W~~L~~  105 (158)
                      ++ .+|++|.+
T Consensus        81 ~~-~~W~~L~~   90 (92)
T d1rl1a_          81 EA-VRWEKLEG   90 (92)
T ss_dssp             SC-CCCSSSBT
T ss_pred             CC-CcCcCccc
Confidence            86 68999864

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.5e-21  Score=136.17  Aligned_cols=90  Identities=17%  Similarity=0.254  Sum_probs=80.8

Q ss_pred             CcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC----CceecCCCCCCcccCCceeEeeCCeEEEEEEec
Q 031527           19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN----PPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR   94 (158)
Q Consensus        19 ~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~----~~~l~g~L~~~I~~deS~w~i~~~~l~i~L~K~   94 (158)
                      ++|.|+||.++|+|+|++|   ..+++.|+|+.+++.|++.+.    .++++++||++|++++|+|++++++|+|+|+|+
T Consensus         4 ~~~~W~Qt~~~V~i~I~v~---~~~~~~v~i~~~~l~~~~~~~~~~~~y~l~~~L~~~I~~~~s~~~v~~~kiei~L~K~   80 (110)
T d1ejfa_           4 ASAKWYDRRDYVFIEFCVE---DSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKG   80 (110)
T ss_dssp             CCEEEEECSSEEEEEECCT---TEEEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEES
T ss_pred             CCcEEEECCCEEEEEEEeC---CCCCceEEEEeceEEEEEEecCCCceEEEEEEcccCcccCccEEEEeCCEEEEEEEEc
Confidence            5699999999999999998   467999999999999987532    357999999999999999999999999999999


Q ss_pred             CCCCCCCCCcCCCCCCC
Q 031527           95 DKGQTWASPIMGQGQLD  111 (158)
Q Consensus        95 ~~~~~W~~L~~~~~~id  111 (158)
                      +++.+|++|++++++++
T Consensus        81 ~~~~~W~~L~~~~~K~~   97 (110)
T d1ejfa_          81 ESGQSWPRLTKERAKLN   97 (110)
T ss_dssp             STTCCCSSSBSSCCCCT
T ss_pred             CCCCCCCceecCCCCcC
Confidence            98889999999987654

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.6e-16  Score=113.54  Aligned_cols=91  Identities=10%  Similarity=0.127  Sum_probs=78.1

Q ss_pred             CCcEEEEeeC-CEEEEEEEcCCCCCCCceEEEeeccEEEEEecC---------------CCceecCCCCCCcccCCceeE
Q 031527           18 QTVFEWDQTL-DEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---------------NPPYLNHELTCPVKTDSSFWT   81 (158)
Q Consensus        18 ~~~Y~W~Qt~-~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g---------------~~~~l~g~L~~~I~~deS~w~   81 (158)
                      ..++.|+|+. +.|+|+|.+. ++.++++.|.|++++|+|.++.               ..+.++.+||++|+|++|+|+
T Consensus        19 ~ir~dwyq~~~~~V~VtI~~K-~v~ke~~~V~f~~~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~S~~~   97 (134)
T d1wh0a_          19 FVKNDSYEKGPDSVVVHVYVK-EICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFC   97 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECC-SBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEE
T ss_pred             ccccceeecCCCEEEEEEEeC-CCchhheEEEEeCCEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhHcEEE
Confidence            4589999985 7899999875 8999999999999999998852               124577899999999999999


Q ss_pred             eeCCeEEEEEEecCCCCCCCCCcCCCCCC
Q 031527           82 LEDDVMHITLTKRDKGQTWASPIMGQGQL  110 (158)
Q Consensus        82 i~~~~l~i~L~K~~~~~~W~~L~~~~~~i  110 (158)
                      +.+++|+|+|+|++. .+|++|......+
T Consensus        98 v~~~kiei~L~K~~~-~~W~~Le~~~~~~  125 (134)
T d1wh0a_          98 FTASRIDICLRKRQS-QRWGGLEAPAARV  125 (134)
T ss_dssp             ECSSEEEEEEEESSS-CCCSCSBCCCSCC
T ss_pred             eCCCEEEEEEEeCCC-CcCcCcccccccc
Confidence            999999999999987 6899998665444

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.87  E-value=7e-05  Score=50.86  Aligned_cols=83  Identities=17%  Similarity=0.232  Sum_probs=66.5

Q ss_pred             cccCCCCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccEEEEEecCC-------C-ce---------e--cCCCCCCc
Q 031527           13 FLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-------P-PY---------L--NHELTCPV   73 (158)
Q Consensus        13 ~~~ng~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~l~v~v~g~-------~-~~---------l--~g~L~~~I   73 (158)
                      +...|.+++...++.+.+.|.+.|| |++++|+.|.+..+.|.|...-.       . .+         |  .-.|...|
T Consensus         5 ~~~~~~~pvdi~e~~~~~~i~~~lP-G~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~v   83 (115)
T d1shsa_           5 ISGKGFMPISIIEGDQHIKVIAWLP-GVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATV   83 (115)
T ss_dssp             EEEESCCCEEEEECSSEEEEEEECT-TCCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCB
T ss_pred             cCCCCcCceEEEEcCCEEEEEEECC-CCCHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCce
Confidence            3445567799999999999999998 89999999999999998875311       0 01         1  23477889


Q ss_pred             ccCCceeEeeCCeEEEEEEecCC
Q 031527           74 KTDSSFWTLEDDVMHITLTKRDK   96 (158)
Q Consensus        74 ~~deS~w~i~~~~l~i~L~K~~~   96 (158)
                      +.+.-..++.+|.|.|+|-|.+.
T Consensus        84 d~~~i~A~~~nGvL~I~lpK~~~  106 (115)
T d1shsa_          84 KEENASAKFENGVLSVILPKAES  106 (115)
T ss_dssp             CGGGCEEEEETTEEEEEEEBCGG
T ss_pred             eecceEEEEECCEEEEEEEeCCC
Confidence            99988999999999999999754

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=97.60  E-value=0.00035  Score=49.54  Aligned_cols=78  Identities=15%  Similarity=0.302  Sum_probs=60.9

Q ss_pred             CCcEEEEeeCCEEEEEEEcCCCCCCCceEEEeeccE-EEEEecCC-------Cce---------e--cCCCCCCcccCCc
Q 031527           18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKH-IELGIKGN-------PPY---------L--NHELTCPVKTDSS   78 (158)
Q Consensus        18 ~~~Y~W~Qt~~~V~I~i~lp~~~~~kdv~V~i~~~~-l~v~v~g~-------~~~---------l--~g~L~~~I~~deS   78 (158)
                      .+++.|.++.+.+.|.+.|| |++++||+|.++... |.++....       ..+         |  .-.|...|+++.-
T Consensus        42 ~p~~dv~e~~~~~~i~~~lP-G~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i  120 (150)
T d1gmea_          42 NARMDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEV  120 (150)
T ss_dssp             GGCEEEEECSSEEEEEEECT-TCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGC
T ss_pred             CCceeEEECCCEEEEEEEeC-CCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeecee
Confidence            47899999999999999998 899999999998654 55543210       011         1  1347889999888


Q ss_pred             eeEeeCCeEEEEEEecCC
Q 031527           79 FWTLEDDVMHITLTKRDK   96 (158)
Q Consensus        79 ~w~i~~~~l~i~L~K~~~   96 (158)
                      .-++.+|.|.|+|.|++.
T Consensus       121 ~A~~~nGvL~I~lpK~~~  138 (150)
T d1gmea_         121 KAGLENGVLTVTVPKAEV  138 (150)
T ss_dssp             EEEEETTEEEEEEECCCC
T ss_pred             EEEEECCEEEEEEEcCCc
Confidence            889999999999999764