Citrus Sinensis ID: 031568

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEcccccHHHHHHHHHHccccccEEEEEccHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHccccccEEEEEccccccEEcccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccHHHHEEcccccEEEEEEccHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHcccccccEEEEEEEcccHcHHHHHHHHHHHHccccEEEEEcccccccEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHcc
Coil and Loop (DISEMBL)
mhlptklfmtgNKILQITAidvnretyeiGLPIIKKAGVDHKINFIESEALSVLDQLLKYsenegsfdyafvdadkdnyCNYHERLMKLLKVGGiavydntlwggtvavpeeqvpdhfrgsSRQAILDLNrsladdprvqlSHVALGDGITICRRIF
Flexible Loop (DISEMBL)
mhlptklfmtgnkILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSladdprvqlshvalgdgiticrrif
Low Complexity Region (SEG)
MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered region (IsUnstruct)
*****KLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV**********AILDLNRSLADDPRVQLSHVALGDGITICRR**
Disordered Region (DISOPRED)
MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered Region (DISEMBL)
MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered Region (DISPRO)
*HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q9C5D7	232	Probable caffeoyl-CoA O-m	yes	no	0.898	0.607	0.640	8e-50
Q43161	241	Caffeoyl-CoA O-methyltran	N/A	no	0.898	0.585	0.563	3e-44
Q40313	247	Caffeoyl-CoA O-methyltran	N/A	no	0.898	0.570	0.560	2e-43
Q9C9W3	232	Putative caffeoyl-CoA O-m	no	no	0.872	0.590	0.574	2e-43
O65162	254	Caffeoyl-CoA O-methyltran	N/A	no	0.898	0.555	0.546	1e-42
O04899	240	Caffeoyl-CoA O-methyltran	N/A	no	0.898	0.587	0.553	4e-42
Q9ZTT5	259	Caffeoyl-CoA O-methyltran	N/A	no	0.904	0.548	0.535	5e-42
Q43095	247	Caffeoyl-CoA O-methyltran	N/A	no	0.898	0.570	0.546	5e-42
O65862	247	Caffeoyl-CoA O-methyltran	no	no	0.898	0.570	0.546	5e-42
Q7F8T6	292	Tricin synthase 2 OS=Oryz	no	no	0.898	0.482	0.524	8e-42

>sp|Q9C5D7|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1

 Score =  195 bits (496), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 91/142 (64%), Positives = 116/142 (81%), Gaps = 1/142 (0%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           ++ AID+NR++YEIGLP+IKKAGV+HKI+F ESEAL  LD+LL    NEG FD+AFVDAD
Sbjct: 92  KVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDAD 151

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY NYHERL++L+KVGGI VYDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ 
Sbjct: 152 KLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSA 210

Query: 136 DPRVQLSHVALGDGITICRRIF 157
           D RVQ+S  ALGDGITICRR++
Sbjct: 211 DQRVQISQAALGDGITICRRLY 232

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 4

>sp|Q43161|CAMT_STELP Caffeoyl-CoA O-methyltransferase OS=Stellaria longipes PE=2 SV=1

 Score =  176 bits (447), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 110/142 (77%), Gaps = 1/142 (0%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +ITA+D++RE Y +GL +IKKAGV+ KI+FI S+A+++LD LL     +GS+D+AFVDAD
Sbjct: 101 KITAVDIDREAYNVGLALIKKAGVESKISFIVSDAMTLLDDLLADGRYQGSYDFAFVDAD 160

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY NYHERL++L+KVGGI  YDNTLWGGTVA+PE +VPD F  ++   +  LN  L  
Sbjct: 161 KTNYVNYHERLIELVKVGGIIAYDNTLWGGTVALPESEVPD-FMKNNWVCVTKLNEILGS 219

Query: 136 DPRVQLSHVALGDGITICRRIF 157
           D R+ ++H+ +GDGIT CRR++
Sbjct: 220 DARIDIAHLPVGDGITFCRRVY 241

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Stellaria longipes (taxid: 19744)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q40313|CAMT_MEDSA Caffeoyl-CoA O-methyltransferase OS=Medicago sativa GN=CCOMT PE=1 SV=1

 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 108/141 (76%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +I A+D+N+E YE+GLP+IKKAGVDHKI+F E  AL VLD+++K  +N GS+D+ FVDAD
Sbjct: 106 KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD 165

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           KDNY NYH+RL+ L+KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA 
Sbjct: 166 KDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAV 225

Query: 136 DPRVQLSHVALGDGITICRRI 156
           DPR+++  + +GDGITICRRI
Sbjct: 226 DPRIEICMLPVGDGITICRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W3|CAMT1_ARATH Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1

 Score =  174 bits (440), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 109/141 (77%), Gaps = 4/141 (2%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +ITAID+++E YE+GL  IKKAGVDHKINFI S+ L  LDQL+    ++  FD+AF DAD
Sbjct: 95  RITAIDIDKEAYEVGLEFIKKAGVDHKINFIHSDGLKALDQLVN---DKCEFDFAFADAD 151

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K +Y N+HERL+KL+KVGGI  +DNTLW G VA  E+ VP+H R   R A+++ N+ LA 
Sbjct: 152 KSSYVNFHERLLKLVKVGGIIAFDNTLWFGFVAEDEDGVPEHMR-EYRAALIEFNKKLAL 210

Query: 136 DPRVQLSHVALGDGITICRRI 156
           DPRV++S +++GDGIT+CRR+
Sbjct: 211 DPRVEVSQISIGDGITLCRRL 231

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65162|CAMT_MESCR Caffeoyl-CoA O-methyltransferase OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 108/141 (76%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +I A+D+NRE YE+GLP+I+KAGV HKI+F E  AL VLD L++ ++N GSFD+AFVDAD
Sbjct: 113 KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIEDAKNHGSFDFAFVDAD 172

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           KDNY NYH+RL+ L+K+GG+  YDNTLW G+VA P +     +    R  +++ N+++A 
Sbjct: 173 KDNYGNYHKRLIDLVKIGGVIGYDNTLWNGSVAAPADAPMRKYVRYYRDFVMEFNKAIAA 232

Query: 136 DPRVQLSHVALGDGITICRRI 156
           DPRV++  + +GDGIT+CRRI
Sbjct: 233 DPRVEICQLPVGDGITLCRRI 253

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O04899|CAMT5_TOBAC Caffeoyl-CoA O-methyltransferase 5 OS=Nicotiana tabacum GN=CCOAOMT5 PE=2 SV=1

 Score =  170 bits (430), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 106/141 (75%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +I A+D+NRE YEIGLPII+KAGV HKI F E  AL VLDQL++  +N G++D+ FVDAD
Sbjct: 99  KILAMDINRENYEIGLPIIEKAGVAHKIEFREGPALPVLDQLVEDKKNHGTYDFIFVDAD 158

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           KDNY NYH+R++ L+KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA 
Sbjct: 159 KDNYINYHKRIIDLVKVGGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAA 218

Query: 136 DPRVQLSHVALGDGITICRRI 156
           DPR+++  + +GDGIT+CRRI
Sbjct: 219 DPRIEICMLPVGDGITLCRRI 239

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates 5-hydroxyferulolyl-CoA more efficiently than caffeoyl-CoA.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9ZTT5|CAMT_PINTA Caffeoyl-CoA O-methyltransferase OS=Pinus taeda GN=CCOAOMT PE=2 SV=1

 Score =  169 bits (429), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 106/142 (74%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +I A+D+NRE Y+IGLPII+KAGV HKI+F E  AL VLD+LLK  +  GSFD+ FVD D
Sbjct: 118 KILAMDINRENYDIGLPIIEKAGVAHKIDFREGPALPVLDELLKNEDMHGSFDFVFVDRD 177

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           KDNY NYH+RL+ L+KVGG+  YDNTLW G+V  P +     +    R  +++LN++LA 
Sbjct: 178 KDNYLNYHKRLIDLVKVGGLIAYDNTLWNGSVVAPPDAPLRKYVRYYRDFVMELNKALAV 237

Query: 136 DPRVQLSHVALGDGITICRRIF 157
           DPR+++S + + DG+T+CRR++
Sbjct: 238 DPRIEISQIPVLDGVTLCRRVY 259

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Pinus taeda (taxid: 3352)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1

 Score =  169 bits (429), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 107/141 (75%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +I A+D+NRE YE+GLP+I+KAGV HKI+F E  AL VLDQ+++  +  GSFD+ FVDAD
Sbjct: 106 KILAMDINRENYELGLPVIQKAGVAHKIDFKEGPALPVLDQMIEDGKYHGSFDFIFVDAD 165

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           KDNY NYH+RL++L+KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA 
Sbjct: 166 KDNYINYHKRLIELVKVGGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAA 225

Query: 136 DPRVQLSHVALGDGITICRRI 156
           DPR+++  + +GDGIT+CRRI
Sbjct: 226 DPRIEICMLPVGDGITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65862|CAMT1_POPTR Caffeoyl-CoA O-methyltransferase 1 OS=Populus trichocarpa GN=CCOAOMT1 PE=2 SV=1

 Score =  169 bits (429), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 107/141 (75%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +I A+D+NRE YE+GLP+I+KAGV HKI+F E  AL VLDQ+++  +  GSFD+ FVDAD
Sbjct: 106 KILAMDINRENYELGLPVIQKAGVAHKIDFKEGPALPVLDQMIEDGKCHGSFDFIFVDAD 165

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           KDNY NYH+RL++L+KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA 
Sbjct: 166 KDNYINYHKRLIELVKVGGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAA 225

Query: 136 DPRVQLSHVALGDGITICRRI 156
           DPR+++  + +GDGIT+CRRI
Sbjct: 226 DPRIEICMLPVGDGITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q7F8T6|OMT17_ORYSJ Tricin synthase 2 OS=Oryza sativa subsp. japonica GN=ROMT-17 PE=1 SV=1

 Score =  169 bits (427), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 105/141 (74%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           ++ AIDV+RE +++GLP+IKKAGV HK++F E  A+ +LD LL   ENEG FD+AFVDAD
Sbjct: 151 KVVAIDVSREYFDLGLPVIKKAGVAHKVDFREGAAMPILDNLLANEENEGKFDFAFVDAD 210

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY  YHERL++L++ GG+  YDNTLWGG+VA+ ++ V + F    R++I+  N  +A 
Sbjct: 211 KGNYGEYHERLLRLVRAGGVLAYDNTLWGGSVALEDDSVLEEFDQDIRRSIVAFNAKIAG 270

Query: 136 DPRVQLSHVALGDGITICRRI 156
           DPRV+   + + DGIT+CRR+
Sbjct: 271 DPRVEAVQLPVSDGITLCRRL 291

Catalyzes the stepwise methylation of tricetin to its 3'-mono- and 3',5'-dimethyl ethers. No 3',4',5'-trimethylated ester derivatives are produced. Can use caffeoyl CoA, 5-hydroxyferulic acid, luteolin, tricetin, quercetin, myrcetin and 7,8-dihydroxyflavone as substrates, but not naringenin, apigenin or kaempferol. The 2,3-double bond and the O-dihydroxyl group of the substrate are both required for catalytic activity of the enzyme.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
255546215	228	o-methyltransferase, putative [Ricinus c	0.898	0.618	0.725	3e-55
224122628	236	predicted protein [Populus trichocarpa]	0.898	0.597	0.704	2e-52
255546213	228	o-methyltransferase, putative [Ricinus c	0.891	0.614	0.695	3e-51
171849075	237	Chain A, Crystal Structure Of Pfomt, Phe	0.898	0.594	0.654	7e-51
297738705	236	unnamed protein product [Vitis vinifera]	0.891	0.593	0.687	1e-49
225444995	282	PREDICTED: probable caffeoyl-CoA O-methy	0.891	0.496	0.687	2e-49
147799759	1625	hypothetical protein VITISV_020117 [Viti	0.891	0.086	0.687	3e-49
147840665	285	hypothetical protein VITISV_007881 [Viti	0.904	0.498	0.664	7e-49
225444997	242	PREDICTED: probable caffeoyl-CoA O-methy	0.904	0.586	0.664	8e-49
255638590	238	unknown [Glycine max]	0.891	0.588	0.617	2e-48

>gi|255546215|ref|XP_002514167.1| o-methyltransferase, putative [Ricinus communis] gi|223546623|gb|EEF48121.1| o-methyltransferase, putative [Ricinus communis]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 123/142 (86%), Gaps = 1/142 (0%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +ITAIDVNRETY+IGLPII+KAGV+HKI+F+ESEAL VLD+LLK   NEGSFD+AFVDAD
Sbjct: 88  KITAIDVNRETYDIGLPIIRKAGVEHKIDFMESEALPVLDKLLKDHGNEGSFDFAFVDAD 147

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY NYHERL+KLLKVGGI VYDNTLWGGTVA+PEE+ P+  R   RQ  ++LN+ LA 
Sbjct: 148 KINYWNYHERLLKLLKVGGIVVYDNTLWGGTVAIPEEEAPEAMR-MGRQLTIELNKLLAA 206

Query: 136 DPRVQLSHVALGDGITICRRIF 157
           D R+Q+SH +LGDGITICRR++
Sbjct: 207 DSRIQISHASLGDGITICRRLY 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122628|ref|XP_002330529.1| predicted protein [Populus trichocarpa] gi|222872463|gb|EEF09594.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/142 (70%), Positives = 117/142 (82%), Gaps = 1/142 (0%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +ITAIDVNRE YEIGLPII+ AGV+HKINFIESEA  +LD+LL+   NEGSFD+AFVDAD
Sbjct: 96  KITAIDVNREAYEIGLPIIRNAGVEHKINFIESEAQPILDKLLEDHGNEGSFDFAFVDAD 155

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY NYHERLMKLLKVGGI VYDNTLWGGTVA+ EE  P++ + + RQ  ++ N+ LA 
Sbjct: 156 KVNYWNYHERLMKLLKVGGIVVYDNTLWGGTVALSEESTPENMK-AGRQLTIEFNKLLAA 214

Query: 136 DPRVQLSHVALGDGITICRRIF 157
           D RVQ+SH   GDGITICRRI+
Sbjct: 215 DSRVQISHAPSGDGITICRRIY 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546213|ref|XP_002514166.1| o-methyltransferase, putative [Ricinus communis] gi|223546622|gb|EEF48120.1| o-methyltransferase, putative [Ricinus communis]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 98/141 (69%), Positives = 118/141 (83%), Gaps = 1/141 (0%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +I AIDV+RE YEIGLPII+KAGV+HKI+F+ESEAL VLD+LLK   NE SFD+AFVDAD
Sbjct: 88  KIVAIDVDREAYEIGLPIIRKAGVEHKIDFMESEALPVLDKLLKEHGNESSFDFAFVDAD 147

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY NYHERL+KL+KVGGI +YDN+LW G+VAVPEE+ P+H R   RQ  ++ N+ LA 
Sbjct: 148 KINYWNYHERLLKLVKVGGIVIYDNSLWRGSVAVPEEEAPEHLR-FCRQLTIEHNKFLAA 206

Query: 136 DPRVQLSHVALGDGITICRRI 156
           D RVQ+SH +LGDGITICRRI
Sbjct: 207 DSRVQISHASLGDGITICRRI 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171849075|pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum gi|171849076|pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum gi|37720881|gb|AAN61072.1| O-methyltransferase [Mesembryanthemum crystallinum]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 117/142 (82%), Gaps = 1/142 (0%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +ITAID +RE YEIGLP I+KAGV+HKINFIES+A+  LD LL+  E+EGS+D+ FVDAD
Sbjct: 97  KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY  YHERLMKL+KVGGI  YDNTLWGGTVA PE +VPD F   +R+A+++LN+ LA 
Sbjct: 157 KPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAA 215

Query: 136 DPRVQLSHVALGDGITICRRIF 157
           DPR+++ H+ LGDGIT CRR++
Sbjct: 216 DPRIEIVHLPLGDGITFCRRLY 237

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738705|emb|CBI27950.3| unnamed protein product [Vitis vinifera]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/141 (68%), Positives = 118/141 (83%), Gaps = 1/141 (0%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +ITAIDV+R+ YE+GLP+I+KAGV+HKINFIES+AL VLD+LL+  ENEG FD+AFVDAD
Sbjct: 96  KITAIDVDRQAYEMGLPVIRKAGVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDAD 155

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY NYHERLMKLLK+GGI VYDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA 
Sbjct: 156 KVNYKNYHERLMKLLKMGGIVVYDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAA 214

Query: 136 DPRVQLSHVALGDGITICRRI 156
           DPRVQ+    LGDGITICRR+
Sbjct: 215 DPRVQICLAPLGDGITICRRV 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444995|ref|XP_002279921.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Vitis vinifera]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/141 (68%), Positives = 118/141 (83%), Gaps = 1/141 (0%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +ITAIDV+R+ YE+GLP+I+KAGV+HKINFIES+AL VLD+LL+  ENEG FD+AFVDAD
Sbjct: 142 KITAIDVDRQAYEMGLPVIRKAGVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDAD 201

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY NYHERLMKLLK+GGI VYDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA 
Sbjct: 202 KVNYKNYHERLMKLLKMGGIVVYDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAA 260

Query: 136 DPRVQLSHVALGDGITICRRI 156
           DPRVQ+    LGDGITICRR+
Sbjct: 261 DPRVQICLAPLGDGITICRRV 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799759|emb|CAN75051.1| hypothetical protein VITISV_020117 [Vitis vinifera]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 97/141 (68%), Positives = 118/141 (83%), Gaps = 1/141 (0%)

Query: 16   QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
            +ITAIDV+R+ YE+GLP+I+KAGV+HKINFIES+AL VLD+LL+  ENEG FD+AFVDAD
Sbjct: 1485 KITAIDVDRQAYEMGLPVIRKAGVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDAD 1544

Query: 76   KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
            K NY NYHERLMKLLK+GGI VYDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA 
Sbjct: 1545 KXNYKNYHERLMKLLKMGGIVVYDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAA 1603

Query: 136  DPRVQLSHVALGDGITICRRI 156
            DPRVQ+    LGDGITICRR+
Sbjct: 1604 DPRVQICLAPLGDGITICRRV 1624

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840665|emb|CAN62003.1| hypothetical protein VITISV_007881 [Vitis vinifera]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 97/146 (66%), Positives = 117/146 (80%), Gaps = 4/146 (2%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +I AIDV+R+ YEIGLPII++AGV+HKINFIES+AL VLD+LL+  ENEGS D+AFVDAD
Sbjct: 140 KIIAIDVDRKNYEIGLPIIRRAGVEHKINFIESQALPVLDKLLEDHENEGSLDFAFVDAD 199

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVP----EEQVPDHFRGSSRQAILDLNR 131
           K NY NYHERLMKLLKVGG+ VYDNTLW GTVA+P    EE V   ++   R+ I++LN+
Sbjct: 200 KGNYKNYHERLMKLLKVGGVVVYDNTLWHGTVALPEDLVEELVDGEYKKEMRKHIMELNK 259

Query: 132 SLADDPRVQLSHVALGDGITICRRIF 157
            LA D RVQ+    LGDGITICRRI+
Sbjct: 260 YLATDSRVQICVAPLGDGITICRRIY 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444997|ref|XP_002279936.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Vitis vinifera]

 Score =  198 bits (503), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 97/146 (66%), Positives = 117/146 (80%), Gaps = 4/146 (2%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +I AIDV+R+ YEIGLPII++AGV+HKINFIES+AL VLD+LL+  ENEGS D+AFVDAD
Sbjct: 97  KIIAIDVDRKNYEIGLPIIRRAGVEHKINFIESQALPVLDKLLEDHENEGSLDFAFVDAD 156

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVP----EEQVPDHFRGSSRQAILDLNR 131
           K NY NYHERLMKLLKVGG+ VYDNTLW GTVA+P    EE V   ++   R+ I++LN+
Sbjct: 157 KGNYKNYHERLMKLLKVGGVVVYDNTLWHGTVALPEDLVEELVDGEYKKEMRKHIMELNK 216

Query: 132 SLADDPRVQLSHVALGDGITICRRIF 157
            LA D RVQ+    LGDGITICRRI+
Sbjct: 217 YLATDSRVQICVAPLGDGITICRRIY 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638590|gb|ACU19602.1| unknown [Glycine max]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 118/141 (83%), Gaps = 1/141 (0%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +ITAID+NR+TYE+GLP+IKKAGV+HKI+FIES AL +LD+LL+   NEGSFD+AF+DAD
Sbjct: 98  KITAIDINRKTYEVGLPVIKKAGVEHKIDFIESPALPILDKLLEDPTNEGSFDFAFIDAD 157

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K+NY NYHERL+KL+K+GG+ VYDNTLWGG V  PE++VP H R S R A ++ N+++ +
Sbjct: 158 KENYVNYHERLIKLVKIGGLLVYDNTLWGGRVCWPEDKVPPHAR-SGRDAAIEFNKTITN 216

Query: 136 DPRVQLSHVALGDGITICRRI 156
           D RV+ +  ++GDG+ ICRR+
Sbjct: 217 DSRVEFALTSVGDGLNICRRV 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.898	0.607	0.640	3.8e-46
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.872	0.590	0.574	7.5e-41
TAIR|locus:2124286	259	CCoAOMT1 "caffeoyl coenzyme A	0.898	0.544	0.546	2.3e-39
UNIPROTKB|Q7F8T6	292	ROMT-17 "Tricin synthase 2" [O	0.898	0.482	0.524	2.9e-39
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.878	0.592	0.539	5.5e-38
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.891	0.555	0.531	1.3e-34
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.828	0.454	0.408	1e-22
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.828	0.486	0.416	2.6e-22
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.847	0.458	0.392	3.5e-20
DICTYBASE|DDB_G0271590	251	omt1 "O-methyltransferase fami	0.847	0.529	0.398	1.7e-18

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 91/142 (64%), Positives = 116/142 (81%)

Query:    16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
             ++ AID+NR++YEIGLP+IKKAGV+HKI+F ESEAL  LD+LL    NEG FD+AFVDAD
Sbjct:    92 KVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDAD 151

Query:    76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
             K NY NYHERL++L+KVGGI VYDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ 
Sbjct:   152 KLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSA 210

Query:   136 DPRVQLSHVALGDGITICRRIF 157
             D RVQ+S  ALGDGITICRR++
Sbjct:   211 DQRVQISQAALGDGITICRRLY 232

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 81/141 (57%), Positives = 109/141 (77%)

Query:    16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
             +ITAID+++E YE+GL  IKKAGVDHKINFI S+ L  LDQL+    ++  FD+AF DAD
Sbjct:    95 RITAIDIDKEAYEVGLEFIKKAGVDHKINFIHSDGLKALDQLVN---DKCEFDFAFADAD 151

Query:    76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
             K +Y N+HERL+KL+KVGGI  +DNTLW G VA  E+ VP+H R   R A+++ N+ LA 
Sbjct:   152 KSSYVNFHERLLKLVKVGGIIAFDNTLWFGFVAEDEDGVPEHMR-EYRAALIEFNKKLAL 210

Query:   136 DPRVQLSHVALGDGITICRRI 156
             DPRV++S +++GDGIT+CRR+
Sbjct:   211 DPRVEVSQISIGDGITLCRRL 231

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2124286 CCoAOMT1 "caffeoyl coenzyme A O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 77/141 (54%), Positives = 106/141 (75%)

Query:    16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
             +I A+DVNRE YE+GLPII+KAGV HKI+F E  AL VLD+++   +N G++D+ FVDAD
Sbjct:   118 KILAMDVNRENYELGLPIIEKAGVAHKIDFREGPALPVLDEIVADEKNHGTYDFIFVDAD 177

Query:    76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
             KDNY NYH+RL+ L+K+GG+  YDNTLW G+V  P +     +    R  +L+LN++LA 
Sbjct:   178 KDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAA 237

Query:   136 DPRVQLSHVALGDGITICRRI 156
             DPR+++  + +GDGITICRRI
Sbjct:   238 DPRIEICMLPVGDGITICRRI 258

GO:0005634 "nucleus" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q7F8T6 ROMT-17 "Tricin synthase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 74/141 (52%), Positives = 105/141 (74%)

Query:    16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
             ++ AIDV+RE +++GLP+IKKAGV HK++F E  A+ +LD LL   ENEG FD+AFVDAD
Sbjct:   151 KVVAIDVSREYFDLGLPVIKKAGVAHKVDFREGAAMPILDNLLANEENEGKFDFAFVDAD 210

Query:    76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
             K NY  YHERL++L++ GG+  YDNTLWGG+VA+ ++ V + F    R++I+  N  +A 
Sbjct:   211 KGNYGEYHERLLRLVRAGGVLAYDNTLWGGSVALEDDSVLEEFDQDIRRSIVAFNAKIAG 270

Query:   136 DPRVQLSHVALGDGITICRRI 156
             DPRV+   + + DGIT+CRR+
Sbjct:   271 DPRVEAVQLPVSDGITLCRRL 291

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 76/141 (53%), Positives = 109/141 (77%)

Query:    16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
             +ITAID+++  Y +GL  +KKAGVDHKINFI+S+A+  LDQLL   + E  +D+AFVDAD
Sbjct:    95 RITAIDIDQAGYNLGLEFMKKAGVDHKINFIQSDAVRGLDQLLNGEKQE--YDFAFVDAD 152

Query:    76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
             K NY  + E+L+KL+KVGGI  +DNTLW GT+   E +VP H R + R+A+L+ N+ LA 
Sbjct:   153 KTNYVYFLEKLLKLVKVGGIIAFDNTLWFGTLIQKENEVPGHMR-AYREALLEFNKILAR 211

Query:   136 DPRVQLSHVALGDGITICRRI 156
             DPRV+++ +++GDG+T+CRR+
Sbjct:   212 DPRVEIAQISIGDGLTLCRRL 232

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 77/145 (53%), Positives = 102/145 (70%)

Query:    16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE---NEGSFDYAFV 72
             ++ AID +RE+YEIG P ++KAGV HK++F E + L  LD+LL        E +FD+AFV
Sbjct:   108 KVVAIDPDRESYEIGRPFLEKAGVAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFV 167

Query:    73 DADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQ-VPDHFRGSSRQAILDLNR 131
             DADK NY  YHE+L++L++VGG  VYDNTLW GTVA+P +  + D  R  S  AI DLN 
Sbjct:   168 DADKPNYVKYHEQLLQLVRVGGHIVYDNTLWAGTVALPPDTPLSDLDRRFS-VAIRDLNS 226

Query:   132 SLADDPRVQLSHVALGDGITICRRI 156
              LA DPR+ +  +A+ DGITICRR+
Sbjct:   227 RLAADPRIDVCQLAIADGITICRRL 251

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 56/137 (40%), Positives = 83/137 (60%)

Query:    16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
             ++ A ++N +  +IG P   +AGV++KI+     A+  LD+LL   E  G +D+ F+DAD
Sbjct:   153 RVVACEINEDYVKIGKPFFAEAGVENKIDIRLKPAVETLDELLSAGE-AGMYDFVFIDAD 211

Query:    76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
             K NY  Y+E+ ++L++ GGI   DN LWGG V  P E   D     S QAI  LN+ L  
Sbjct:   212 KKNYETYYEKSLQLVRKGGIVAIDNVLWGGRVINPAE---DDL---SSQAIDKLNKKLHK 265

Query:   136 DPRVQLSHVALGDGITI 152
             D R+ LS + +GDG+T+
Sbjct:   266 DERIDLSMLTVGDGLTL 282

GO:0008171 "O-methyltransferase activity" evidence=IEA

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 57/137 (41%), Positives = 84/137 (61%)

Query:    16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
             ++ A D+N +  +IG P+ K+AGVDHKI+     A   LD+LL   E E +FD+AF+DAD
Sbjct:   134 RVIACDINEDYAKIGKPLWKEAGVDHKIDLRIKPATQTLDELLAGGEAE-TFDFAFIDAD 192

Query:    76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
             K++Y  Y+E+ ++L+K GGI   DN L  G V  P +   D     + Q+I  LN  L  
Sbjct:   193 KESYNEYYEKCLRLIKKGGIIAIDNVLRCGMVLKPRK---DDL---ATQSIHHLNEKLVR 246

Query:   136 DPRVQLSHVALGDGITI 152
             D RV +S + +GDG+T+
Sbjct:   247 DARVNISMIPMGDGVTL 263

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 55/140 (39%), Positives = 80/140 (57%)

Query:    16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
             ++ A D +    E+     + AGV HK+      A   L  +++  E E S+D+AF+DAD
Sbjct:   157 RLVACDKDANALEVAKRYYELAGVSHKVTVKHGLAAESLMSMIQNGE-ESSYDFAFLDAD 215

Query:    76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
             K  Y  Y E L++L++VGG+ V DN LW G VA  +  V D    S R    + N+ L D
Sbjct:   216 KAMYQEYFESLLRLVRVGGVIVIDNVLWHGWVA--DSTVNDERTISLR----NFNKKLMD 269

Query:   136 DPRVQLSHVALGDGITICRR 155
             D RV +S V++GDG+TICR+
Sbjct:   270 DQRVSISMVSIGDGMTICRK 289

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

DICTYBASE|DDB_G0271590 omt1 "O-methyltransferase family 3 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 59/148 (39%), Positives = 87/148 (58%)

Query:    16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
             ++T+ID  R+  E      KKA VDHKIN +   A + L +L+   E+ G+FD+ F+DAD
Sbjct:   104 KVTSIDCVRDYEECCHLHWKKANVDHKINLVIDNAKNHLQKLIDNGES-GTFDFIFIDAD 162

Query:    76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV------PEEQVPDHFRGS-SRQAILD 128
             KD+Y  Y+E  +KL++ GGI  +DN L+ G   V      PE+Q+   F G  S Q ++D
Sbjct:   163 KDSYDAYYELSLKLIRKGGIIAFDNILFFGATLVDHDSKKPEDQI---FLGCPSFQRMVD 219

Query:   129 ----LNRSLADDPRVQLSHVALGDGITI 152
                 LN  +A+D RV  + + L DGIT+
Sbjct:   220 ALKLLNEKIANDERVIKTMLPLSDGITL 247

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5D7	CAMT3_ARATH	2, ., 1, ., 1, ., 1, 0, 4	0.6408	0.8980	0.6077	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	2e-68
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	2e-65
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	2e-55
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	3e-29
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	2e-26
pfam13578	105	pfam13578, Methyltransf_24, Methyltransferase doma	5e-04

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  206 bits (527), Expect = 2e-68
 Identities = 84/142 (59%), Positives = 117/142 (82%), Gaps = 2/142 (1%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +ITAID+++E YE+GL  IKKAGVDHKINFI+S+ALS LDQLL  ++ +  FD+AFVDAD
Sbjct: 95  RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN-NDPKPEFDFAFVDAD 153

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY ++HE+L+KL+KVGGI  +DNTLW G VA  E++VP+H R + R+A+L+ N+ LA 
Sbjct: 154 KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMR-AYRKALLEFNKLLAS 212

Query: 136 DPRVQLSHVALGDGITICRRIF 157
           DPRV++S +++GDG+T+CRR+ 
Sbjct: 213 DPRVEISQISIGDGVTLCRRLV 234

Length = 234

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  197 bits (504), Expect = 2e-65
 Identities = 73/141 (51%), Positives = 100/141 (70%), Gaps = 7/141 (4%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +ITA D++ E YEIGLP I+KAGV  KI+F   +AL  L++L+K  +  G FD+ FVDAD
Sbjct: 71  KITACDIDPEAYEIGLPFIQKAGVADKISFRLGDALPTLEELVK-DKPLGEFDFIFVDAD 129

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY NY+ERL++L+KVGG+   DNTLW G VA P+++VP          + +LN+ LA 
Sbjct: 130 KSNYPNYYERLLELVKVGGLIAIDNTLWFGKVAEPDDEVPKT------VRVRELNKLLAS 183

Query: 136 DPRVQLSHVALGDGITICRRI 156
           D RV++S + +GDGIT+CRRI
Sbjct: 184 DERVEISMLPVGDGITLCRRI 204

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  174 bits (442), Expect = 2e-55
 Identities = 76/141 (53%), Positives = 106/141 (75%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +I A+D+NRE YE+GLP+I+KAGV HKI+F E  AL VLDQ+++  +  G+FD+ FVDAD
Sbjct: 106 KILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           KDNY NYH+RL+ L+KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA 
Sbjct: 166 KDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAA 225

Query: 136 DPRVQLSHVALGDGITICRRI 156
           DPR+++  + +GDGIT+CRRI
Sbjct: 226 DPRIEICMLPVGDGITLCRRI 246

Length = 247

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score =  105 bits (265), Expect = 3e-29
 Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 10/141 (7%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDA 74
           ++T I+ + E  EI    + +AGVD +I  +   +AL VL +LL     +GSFD  F+DA
Sbjct: 86  RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLL-----DGSFDLVFIDA 140

Query: 75  DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 134
           DK +Y  Y ER + LL+ GG+ V DN L+GG VA P  +       +  + + D N  L 
Sbjct: 141 DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDAR----TQVRGVRDFNDYLL 196

Query: 135 DDPRVQLSHVALGDGITICRR 155
           +DPR     + LGDG+ + R+
Sbjct: 197 EDPRYDTVLLPLGDGLLLSRK 217

Length = 219

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score =  100 bits (249), Expect = 2e-26
 Identities = 56/137 (40%), Positives = 80/137 (58%), Gaps = 14/137 (10%)

Query: 19  AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 78
           +++V +  YE        AGV HK+N     A   L  +++  E   S+D+AFVDADK  
Sbjct: 155 SLEVAKRYYE-------LAGVSHKVNVKHGLAAESLKSMIQNGE-GSSYDFAFVDADKRM 206

Query: 79  YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPR 138
           Y +Y E L++L++VGG+ V DN LW G VA P   V D    +   +I + N+ L DD R
Sbjct: 207 YQDYFELLLQLVRVGGVIVMDNVLWHGRVADP--LVND----AKTISIRNFNKKLMDDKR 260

Query: 139 VQLSHVALGDGITICRR 155
           V +S V +GDG+TICR+
Sbjct: 261 VSISMVPIGDGMTICRK 277

Length = 278

>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 12  NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF 71
           N + ++ +ID            ++KAG+  ++  +  ++L  L +L      +GS D  F
Sbjct: 21  NGLGRLYSIDPWPGAEAG--ANLRKAGLADRVRLLRGDSLEALARL-----PDGSIDLLF 73

Query: 72  VDADKDNYCNYH--ERLMKLLKVGGIAVYDNT 101
           +D D          E  + LL  GGI V+ + 
Sbjct: 74  IDGDHTYEAVLADLELWLPLLAPGGIIVFHDI 105

This family appears to be a methyltransferase domain. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	100.0
PLN02589	247	caffeoyl-CoA O-methyltransferase	100.0
COG4122	219	Predicted O-methyltransferase [General function pr	100.0
PLN02476	278	O-methyltransferase	100.0
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	100.0
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	99.97
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.53
PRK04457	262	spermidine synthase; Provisional	99.53
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.51
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.44
PLN03075	296	nicotianamine synthase; Provisional	99.44
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.43
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	99.43
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.41
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.4
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.38
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.37
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.37
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.37
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.36
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.36
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.34
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.34
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.34
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.34
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.33
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.33
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.32
PRK00811	283	spermidine synthase; Provisional	99.32
PRK01581	374	speE spermidine synthase; Validated	99.31
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.3
PLN02366	308	spermidine synthase	99.29
COG4123	248	Predicted O-methyltransferase [General function pr	99.27
PLN02823	336	spermine synthase	99.27
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.27
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.25
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.25
PRK07402	196	precorrin-6B methylase; Provisional	99.25
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.24
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.24
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.23
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.21
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.21
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.21
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.2
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.19
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.19
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.19
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.18
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.18
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.17
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.17
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.16
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.15
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.14
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.13
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.12
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.1
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.09
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.08
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.07
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.06
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.05
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.04
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.04
PRK03612	521	spermidine synthase; Provisional	99.03
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.02
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.02
PLN02244	340	tocopherol O-methyltransferase	99.01
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.01
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.0
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.0
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.99
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.99
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.99
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.95
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.95
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.94
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.93
PRK14967	223	putative methyltransferase; Provisional	98.92
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.92
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.92
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.92
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.92
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.9
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.9
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.9
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.89
COG2890	280	HemK Methylase of polypeptide chain release factor	98.89
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.88
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.87
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.87
PRK14968	188	putative methyltransferase; Provisional	98.87
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.85
PRK11207	197	tellurite resistance protein TehB; Provisional	98.85
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.84
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.84
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.83
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.81
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.81
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.8
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.8
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.8
PRK04266	226	fibrillarin; Provisional	98.79
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.79
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.78
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.77
COG2521	287	Predicted archaeal methyltransferase [General func	98.76
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.76
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.75
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.74
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.72
COG2520	341	Predicted methyltransferase [General function pred	98.72
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.71
PRK06922	677	hypothetical protein; Provisional	98.71
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.71
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.7
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.69
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.69
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.68
PRK08317	241	hypothetical protein; Provisional	98.66
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.66
PRK00536	262	speE spermidine synthase; Provisional	98.66
PLN02336	475	phosphoethanolamine N-methyltransferase	98.65
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.64
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.64
PRK12335	287	tellurite resistance protein TehB; Provisional	98.63
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.62
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.62
PLN02672	1082	methionine S-methyltransferase	98.6
PLN02490	340	MPBQ/MSBQ methyltransferase	98.6
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.59
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.58
KOG4300	252	consensus Predicted methyltransferase [General fun	98.57
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.57
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.55
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.53
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.51
KOG2730	263	consensus Methylase [General function prediction o	98.5
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.49
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.48
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.43
PTZ00146	293	fibrillarin; Provisional	98.42
KOG2904	328	consensus Predicted methyltransferase [General fun	98.41
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.4
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.39
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.39
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.39
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.38
TIGR03438	301	probable methyltransferase. This model represents	98.36
KOG1271	227	consensus Methyltransferases [General function pre	98.33
PHA03411	279	putative methyltransferase; Provisional	98.33
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.32
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.31
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.3
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.3
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.29
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.29
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.28
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.28
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.25
PRK10742	250	putative methyltransferase; Provisional	98.24
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.24
PLN02336	475	phosphoethanolamine N-methyltransferase	98.24
PHA03412	241	putative methyltransferase; Provisional	98.23
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.21
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.19
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.17
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	98.14
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.13
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.12
KOG2899	288	consensus Predicted methyltransferase [General fun	98.11
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.1
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.1
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.08
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.07
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.07
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.04
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.03
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.0
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.0
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.99
TIGR00438	188	rrmJ cell division protein FtsJ.	97.94
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.94
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.91
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.9
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.87
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.84
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.83
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.81
PRK05785	226	hypothetical protein; Provisional	97.79
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.78
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.78
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.75
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.75
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	97.73
PRK06202	232	hypothetical protein; Provisional	97.71
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.66
COG4076	252	Predicted RNA methylase [General function predicti	97.65
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.61
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.59
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.57
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.57
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.56
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.5
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.46
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.45
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.45
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.42
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.37
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	97.36
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.36
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.3
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	97.3
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.25
PRK13699	227	putative methylase; Provisional	97.24
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.24
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.22
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.21
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.19
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.15
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.14
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.14
KOG3010	261	consensus Methyltransferase [General function pred	97.13
PRK11524	284	putative methyltransferase; Provisional	97.11
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.09
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.08
KOG2361	264	consensus Predicted methyltransferase [General fun	97.08
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.01
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.95
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.89
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.82
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.8
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	96.76
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.72
KOG3201	201	consensus Uncharacterized conserved protein [Funct	96.64
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.6
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.41
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	96.34
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.05
KOG1227	351	consensus Putative methyltransferase [General func	95.99
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	95.92
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	95.92
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.91
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.84
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	95.81
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	95.67
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.64
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	95.53
PRK04148	134	hypothetical protein; Provisional	95.52
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.34
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.34
COG1568	354	Predicted methyltransferases [General function pre	95.24
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.11
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	95.09
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	95.09
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	95.03
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	94.93
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	94.88
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	94.76
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.75
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	94.66
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	94.64
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	94.34
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	94.26
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	94.22
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.22
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.13
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	94.13
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.05
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	93.86
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	93.75
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	93.7
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	93.5
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	93.46
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.4
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	93.24
PF00072	112	Response_reg: Response regulator receiver domain;	93.1
KOG2671	421	consensus Putative RNA methylase [Replication, rec	93.04
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	92.99
PHA01634	156	hypothetical protein	92.82
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.81
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	92.77
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	92.73
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	92.72
COG2961	279	ComJ Protein involved in catabolism of external DN	92.66
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	92.49
COG2130	340	Putative NADP-dependent oxidoreductases [General f	92.47
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	92.47
KOG0781	587	consensus Signal recognition particle receptor, al	92.45
PLN02827	378	Alcohol dehydrogenase-like	92.34
PLN02740	381	Alcohol dehydrogenase-like	92.31
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	92.26
KOG3115	249	consensus Methyltransferase-like protein [General	92.06
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	92.04
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	92.0
COG4798	238	Predicted methyltransferase [General function pred	91.71
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	91.66
PLN02353	473	probable UDP-glucose 6-dehydrogenase	91.66
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	91.54
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	91.51
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	91.39
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	91.36
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	91.34
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	91.23
PTZ00357	1072	methyltransferase; Provisional	91.17
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	91.14
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	91.02
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	90.96
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	90.95
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	90.89
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	90.87
KOG2912	419	consensus Predicted DNA methylase [Function unknow	90.81
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	90.8
PF14740	289	DUF4471: Domain of unknown function (DUF4471)	90.68
PF13679	141	Methyltransf_32: Methyltransferase domain	90.58
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	90.47
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	90.34
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.31
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	90.12
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	89.79
KOG2360	413	consensus Proliferation-associated nucleolar prote	89.75
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	89.74
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	89.65
KOG0780	483	consensus Signal recognition particle, subunit Srp	89.6
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	89.5
PF08351	92	DUF1726: Domain of unknown function (DUF1726); Int	89.37
PRK11524	284	putative methyltransferase; Provisional	89.34
COG0286	489	HsdM Type I restriction-modification system methyl	89.19
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	89.03
KOG2078	495	consensus tRNA modification enzyme [RNA processing	89.03
PF03269	177	DUF268: Caenorhabditis protein of unknown function	88.95
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	88.77
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	88.63
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	88.4
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	88.21
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	88.06
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	87.98
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	87.96
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	87.96
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	87.9
KOG1501	636	consensus Arginine N-methyltransferase [General fu	87.89
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	87.35
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	87.33
PRK10840	216	transcriptional regulator RcsB; Provisional	87.2
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	87.19
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	87.15
COG3897	218	Predicted methyltransferase [General function pred	87.07
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	86.87
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.73
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	86.67
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	86.51
PRK09028	394	cystathionine beta-lyase; Provisional	86.27
PRK13699	227	putative methylase; Provisional	85.67
KOG2940	325	consensus Predicted methyltransferase [General fun	85.23
PRK08114	395	cystathionine beta-lyase; Provisional	84.74
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	84.72
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	84.47
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	84.23
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	83.97
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	83.81
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	83.65
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	83.59
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	83.47
KOG2456	477	consensus Aldehyde dehydrogenase [Energy productio	83.38
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	83.12
COG0745	229	OmpR Response regulators consisting of a CheY-like	83.09
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	82.81
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	82.18
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	82.18
PLN02586	360	probable cinnamyl alcohol dehydrogenase	82.06
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	81.72
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	81.51
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	81.4
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	81.3
PTZ00354	334	alcohol dehydrogenase; Provisional	81.18
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	81.17
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	81.13
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	81.04
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	80.89
PRK05967	395	cystathionine beta-lyase; Provisional	80.64
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	80.63
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	80.62
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	80.57
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	80.57
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	80.5
PRK07417	279	arogenate dehydrogenase; Reviewed	80.28
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	80.26

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=100.00  E-value=2.7e-35  Score=214.39  Aligned_cols=149  Identities=37%  Similarity=0.649  Sum_probs=131.2

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|+||+++|.+.| +++|+++|++|+.++.|+++++++|+.++|+++.||+.+.++++... .+.++||+||+|+++..|
T Consensus        56 ~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~-~~~~~fD~VFiDa~K~~y  134 (205)
T PF01596_consen   56 TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAND-GEEGQFDFVFIDADKRNY  134 (205)
T ss_dssp             TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHT-TTTTSEEEEEEESTGGGH
T ss_pred             cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhc-cCCCceeEEEEcccccch
Confidence            5999999999775 79999999999999999999999999999999999999999987531 012579999999999999


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      ..+|+.+.++|+|||+|++||++|+|.+..|...      ......+++|++.+.+||+|+++++|+|||+.|++|+
T Consensus       135 ~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~------~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~  205 (205)
T PF01596_consen  135 LEYFEKALPLLRPGGVIIADNVLWRGSVADPDDE------DPKTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR  205 (205)
T ss_dssp             HHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGG------SHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred             hhHHHHHhhhccCCeEEEEccccccceecCccch------hhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence            9999999999999999999999999999887421      1145569999999999999999999999999999996

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=6e-34  Score=212.31  Aligned_cols=156  Identities=49%  Similarity=0.852  Sum_probs=133.8

Q ss_pred             CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      +|+||+++|.+. ++++|+++|.+++.++.|+++++++|+.++|+++.|++.+.++++.......++||+||+|+++..|
T Consensus        90 ~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y  169 (247)
T PLN02589         90 TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNY  169 (247)
T ss_pred             hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHh
Confidence            599999999876 5899999999999999999999999999999999999999999874210002589999999999999


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      ..+|+.+.++|+|||+|++||++|+|.+..|....++.....+.+.+++|++.+.++|++.++++|+|||+.+++|+
T Consensus       170 ~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k~  246 (247)
T PLN02589        170 INYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI  246 (247)
T ss_pred             HHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence            99999999999999999999999999998875322211111133468999999999999999999999999999986

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=100.00  E-value=4.7e-34  Score=208.17  Aligned_cols=147  Identities=37%  Similarity=0.590  Sum_probs=133.3

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      .|+||++||...| ++++++||++|++++.|++|+++.|+.++|+++. +|+.+.+....     .++||+||+|++|..
T Consensus        70 ~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~-----~~~fDliFIDadK~~  144 (219)
T COG4122          70 IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLL-----DGSFDLVFIDADKAD  144 (219)
T ss_pred             cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhcc-----CCCccEEEEeCChhh
Confidence            5999999999888 9999999999999999999999999999999999 69999988632     589999999999999


Q ss_pred             cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      |+++|+.+.++|+|||+|++||++++|.+..|..   +..++ ..+.++.|++.+.++|+++++++|+|||+.+++|+
T Consensus       145 yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~  218 (219)
T COG4122         145 YPEYLERALPLLRPGGLIVADNVLFGGRVADPSI---RDART-QVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKR  218 (219)
T ss_pred             CHHHHHHHHHHhCCCcEEEEeecccCCccCCccc---hhHHH-HHHHHHHHHHHHhhCcCceeEEEecCCceEEEeec
Confidence            9999999999999999999999999999987742   22222 56679999999999999999999999999999986

>PLN02476 O-methyltransferase

Probab=100.00  E-value=1e-32  Score=208.11  Aligned_cols=149  Identities=35%  Similarity=0.555  Sum_probs=132.7

Q ss_pred             CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|+||++++... ++++|+++|.+++.++.|++|++++|+.++|+++.||+.+.++.+.+. ...++||+||+|++++.|
T Consensus       129 tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~-~~~~~FD~VFIDa~K~~Y  207 (278)
T PLN02476        129 TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN-GEGSSYDFAFVDADKRMY  207 (278)
T ss_pred             CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-ccCCCCCEEEECCCHHHH
Confidence            599999999866 488999999999999999999999999999999999999999876311 013589999999999999


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      .++++.+.++|+|||+|++||++|+|.+..|...-      ..+..+++|++.+.++|++.++++|+|||+++++|+
T Consensus       208 ~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d------~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~  278 (278)
T PLN02476        208 QDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVND------AKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR  278 (278)
T ss_pred             HHHHHHHHHhcCCCcEEEEecCccCCcccCcccCC------HHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence            99999999999999999999999999998775311      146689999999999999999999999999999985

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=6e-32  Score=201.05  Aligned_cols=155  Identities=54%  Similarity=0.917  Sum_probs=135.8

Q ss_pred             CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      +|+||+++++.. ++++|+++|+++++++.|++|++++|+.++++++.||+.+.++.+.+. .+.++||+||+|+.++.|
T Consensus        79 ~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~-~~~~~fD~VfiDa~k~~y  157 (234)
T PLN02781         79 TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN-DPKPEFDFAFVDADKPNY  157 (234)
T ss_pred             ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC-CCCCCCCEEEECCCHHHH
Confidence            488999999865 488999999999999999999999999989999999999998876321 013589999999999999


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEeC
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF  157 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~~  157 (157)
                      ..+++.+.++|+|||+|++||++|+|.+..|....+++.+. ..+.+++|++.+.++|++.++++|+|||+.+++|+.
T Consensus       158 ~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~-~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~~  234 (234)
T PLN02781        158 VHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRA-YRKALLEFNKLLASDPRVEISQISIGDGVTLCRRLV  234 (234)
T ss_pred             HHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhH-HHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEeC
Confidence            99999999999999999999999999998876443433333 568899999999999999999999999999999863

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=2.2e-29  Score=182.28  Aligned_cols=150  Identities=50%  Similarity=0.829  Sum_probs=134.5

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      +|+|.+.+|.+.| +++|+++|++++.++.+.+..+.+|..++|++++|++.+.+.++.+. .+.++||++|+|++|.+|
T Consensus        84 TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~-~~~~tfDfaFvDadK~nY  162 (237)
T KOG1663|consen   84 TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLAD-GESGTFDFAFVDADKDNY  162 (237)
T ss_pred             cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhc-CCCCceeEEEEccchHHH
Confidence            6999999999876 89999999999999999999999999999999999999999988653 245789999999999999


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHH---HHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL---DLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      ..+++++.+++++||+|++||++|+|.+..|....+.     ....++   +++..|..||++..+++|+|||+.+++|+
T Consensus       163 ~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~-----~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG~~i~~k~  237 (237)
T KOG1663|consen  163 SNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPV-----RGRSIREALNLNKKLARDPRVYISLLPIGDGITICRKR  237 (237)
T ss_pred             HHHHHHHHhhcccccEEEEeccccCCcccCcccCCCc-----chhhhhhhhhhhhHhccCcceeeEeeeccCceeeeccC
Confidence            9999999999999999999999999988777654432     334566   89999999999999999999999999985

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.53  E-value=4.7e-14  Score=93.05  Aligned_cols=92  Identities=20%  Similarity=0.253  Sum_probs=74.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-CCcc--
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-DKDN--   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~~~~--   78 (157)
                      |..+..+++..++.+|+++|++|++++.|++++...+..++++++++|+ ......      .++||+|++.. ....  
T Consensus        13 G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D~v~~~~~~~~~~~   85 (112)
T PF12847_consen   13 GRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFDLVICSGFTLHFLL   85 (112)
T ss_dssp             SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEEEEEECSGSGGGCC
T ss_pred             CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCCEEEECCCcccccc
Confidence            5566667776799999999999999999999998888888999999999 332222      46799999988 3222  


Q ss_pred             ----cHHHHHHHHhcccCCeEEEEec
Q 031568           79 ----YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ----~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                          ...+++.+.+.|+|||+++++.
T Consensus        86 ~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   86 PLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence                2456889999999999999864

...

>PRK04457 spermidine synthase; Provisional

Probab=99.53  E-value=4.2e-13  Score=101.54  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=76.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++...|+.+++++|++|++++.|++++...+..++++++.+|+.++++..      .++||+|++|....    
T Consensus        78 G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------~~~yD~I~~D~~~~~~~~  151 (262)
T PRK04457         78 GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------RHSTDVILVDGFDGEGII  151 (262)
T ss_pred             hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------CCCCCEEEEeCCCCCCCc
Confidence            44555566777999999999999999999999876655578999999999998754      46899999997322    


Q ss_pred             ---ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 ---NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 ---~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                         ...++++.+.+.|+|||+++++
T Consensus       152 ~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        152 DALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             cccCcHHHHHHHHHhcCCCcEEEEE
Confidence               1368999999999999999995

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.51  E-value=7.2e-13  Score=94.20  Aligned_cols=86  Identities=23%  Similarity=0.255  Sum_probs=77.9

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM   87 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~   87 (157)
                      ++...|.++|++||.++++++..++|++++|. ++++++.|++.+.++.+       .+||.||+.+. ..+..+++.+.
T Consensus        52 ~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~-------~~~daiFIGGg-~~i~~ile~~~  122 (187)
T COG2242          52 WALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDL-------PSPDAIFIGGG-GNIEEILEAAW  122 (187)
T ss_pred             HHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCC-------CCCCEEEECCC-CCHHHHHHHHH
Confidence            55567999999999999999999999999996 59999999999998743       37999999998 78899999999


Q ss_pred             hcccCCeEEEEeccc
Q 031568           88 KLLKVGGIAVYDNTL  102 (157)
Q Consensus        88 ~~L~~gG~iv~~~~~  102 (157)
                      ..|+|||.||++.+.
T Consensus       123 ~~l~~ggrlV~nait  137 (187)
T COG2242         123 ERLKPGGRLVANAIT  137 (187)
T ss_pred             HHcCcCCeEEEEeec
Confidence            999999999998664

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.44  E-value=2e-13  Score=89.57  Aligned_cols=95  Identities=25%  Similarity=0.396  Sum_probs=51.1

Q ss_pred             CcccHHHHHhhCC-C--cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-
Q 031568            1 MHLPTKLFMTGNK-I--LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-   76 (157)
Q Consensus         1 ~g~st~~l~~~~~-~--~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-   76 (157)
                      .|.||.++++..+ .  ++++++|..+. .+.+++++++.++.++++++.++..+.++.+.     .++||+||+|+++ 
T Consensus         7 ~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~iDg~H~   80 (106)
T PF13578_consen    7 SGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIFIDGDHS   80 (106)
T ss_dssp             --------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEEEES---
T ss_pred             cccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEEECCCCC
Confidence            3889999888543 3  38999999997 55666777777887899999999999998774     3689999999975 


Q ss_pred             -cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 -DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 -~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                       +.....++.+.++|+|||+|+++++
T Consensus        81 ~~~~~~dl~~~~~~l~~ggviv~dD~  106 (106)
T PF13578_consen   81 YEAVLRDLENALPRLAPGGVIVFDDY  106 (106)
T ss_dssp             HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence             3455678888999999999999874

>PLN03075 nicotianamine synthase; Provisional

Probab=99.44  E-value=6.7e-13  Score=101.30  Aligned_cols=92  Identities=14%  Similarity=0.294  Sum_probs=78.7

Q ss_pred             cccHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC----C
Q 031568            2 HLPTKLFMT-GNKILQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA----D   75 (157)
Q Consensus         2 g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~----~   75 (157)
                      |+|++++++ ..|+++++++|+|+++++.||++++. .++.++++|+.+|+.+..+.       .++||+||+++    +
T Consensus       136 pltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-------l~~FDlVF~~ALi~~d  208 (296)
T PLN03075        136 PLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-------LKEYDVVFLAALVGMD  208 (296)
T ss_pred             HHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-------cCCcCEEEEecccccc
Confidence            567777776 56999999999999999999999965 88888999999999885321       35799999986    3


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEec
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      +..+.++++.+.+.|+|||++++..
T Consensus       209 k~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        209 KEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cccHHHHHHHHHHhcCCCcEEEEec
Confidence            5678899999999999999999975

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.43  E-value=1.6e-12  Score=102.69  Aligned_cols=88  Identities=19%  Similarity=0.347  Sum_probs=75.1

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC------------ccc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK------------DNY   79 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~------------~~~   79 (157)
                      ...+|++||.+...++.|++|++.+|++ ++++++++|+.++++....   .+.+||+|++||+.            +.|
T Consensus       239 GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~---~g~~fDlIilDPPsF~r~k~~~~~~~rdy  315 (393)
T COG1092         239 GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER---RGEKFDLIILDPPSFARSKKQEFSAQRDY  315 (393)
T ss_pred             CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh---cCCcccEEEECCcccccCcccchhHHHHH
Confidence            3449999999999999999999999986 6799999999999998753   24589999999852            246


Q ss_pred             HHHHHHHHhcccCCeEEEEecccC
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ..+...+.++|+|||++++.++..
T Consensus       316 ~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         316 KDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             HHHHHHHHHHcCCCCEEEEEecCC
Confidence            778888999999999999977653

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=99.43  E-value=3.5e-12  Score=92.31  Aligned_cols=124  Identities=19%  Similarity=0.258  Sum_probs=94.7

Q ss_pred             HHHHHh--hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHhhcCCCCCceeEEEEcCCCcccH-
Q 031568            5 TKLFMT--GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENEGSFDYAFVDADKDNYC-   80 (157)
Q Consensus         5 t~~l~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~-   80 (157)
                      |+.|+.  +..+++++||-.+++.....++.+...+..+.++|+.|+. .+.++.+       ...|++++|+..+++. 
T Consensus        58 tiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-------~~iDF~vVDc~~~d~~~  130 (218)
T PF07279_consen   58 TIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-------KGIDFVVVDCKREDFAA  130 (218)
T ss_pred             HHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc-------cCCCEEEEeCCchhHHH
Confidence            444555  4589999999999999999999999999887889999985 5577665       4699999999877777 


Q ss_pred             HHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEE
Q 031568           81 NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICR  154 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~  154 (157)
                      .+|+.+ ++-+.|.++|+.|...++.-                  --.|...++..+.+.+++||+|.|++|++
T Consensus       131 ~vl~~~-~~~~~GaVVV~~Na~~r~~~------------------~~~w~~~~~~~r~Vrsv~LPIG~GleVt~  185 (218)
T PF07279_consen  131 RVLRAA-KLSPRGAVVVCYNAFSRSTN------------------GFSWRSVLRGRRVVRSVFLPIGKGLEVTR  185 (218)
T ss_pred             HHHHHh-ccCCCceEEEEeccccCCcC------------------CccHHHhcCCCCceeEEEeccCCCeEEEE
Confidence            777654 44456788888897643210                  01233445667789999999999999986

The function of this family is unknown.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.41  E-value=7.9e-12  Score=100.83  Aligned_cols=132  Identities=23%  Similarity=0.257  Sum_probs=95.4

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |.-|+.++.. .+.++|+++|+++++++.+++|++++|+. +++++.+|+.+.......   ..++||.|++|+++..  
T Consensus       264 G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~---~~~~fD~Vl~DaPCSg~G  339 (434)
T PRK14901        264 GGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQ---WRGYFDRILLDAPCSGLG  339 (434)
T ss_pred             chhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccccccc---ccccCCEEEEeCCCCccc
Confidence            4556666664 35689999999999999999999999986 699999999875321100   1357999999975421  


Q ss_pred             -----------------------cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhc
Q 031568           79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD  135 (157)
Q Consensus        79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  135 (157)
                                             ..++++.+.++|+|||.+++.++...     |++         ....+..|+   ..
T Consensus       340 ~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~-----~~E---------ne~~v~~~l---~~  402 (434)
T PRK14901        340 TLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH-----PAE---------NEAQIEQFL---AR  402 (434)
T ss_pred             ccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-----hhh---------HHHHHHHHH---Hh
Confidence                                   13568888899999999999876542     221         445566664   56


Q ss_pred             CCCeeEE-----eeec---CCeeEEEE
Q 031568          136 DPRVQLS-----HVAL---GDGITICR  154 (157)
Q Consensus       136 ~~~~~~~-----~~p~---~~G~~v~~  154 (157)
                      +|+|...     ++|-   +||+++|+
T Consensus       403 ~~~~~~~~~~~~~~P~~~~~dGfF~a~  429 (434)
T PRK14901        403 HPDWKLEPPKQKIWPHRQDGDGFFMAV  429 (434)
T ss_pred             CCCcEecCCCCccCCCCCCCCcEEEEE
Confidence            7777533     4553   59999985

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.40  E-value=3e-12  Score=91.90  Aligned_cols=89  Identities=19%  Similarity=0.238  Sum_probs=75.9

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      .|..+..++...++++|+++|.++++++.+++++++.+++ +++++.+|+.+...        .++||+|++++ ...+.
T Consensus        53 tG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~--------~~~fD~I~s~~-~~~~~  122 (181)
T TIGR00138        53 AGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQH--------EEQFDVITSRA-LASLN  122 (181)
T ss_pred             CCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccc--------cCCccEEEehh-hhCHH
Confidence            3666777777778899999999999999999999999885 69999999987521        46899999987 45677


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      .+++.+.++|+|||.+++.
T Consensus       123 ~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       123 VLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             HHHHHHHHhcCCCCEEEEE
Confidence            8889999999999999974

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.38  E-value=2.3e-11  Score=98.04  Aligned_cols=95  Identities=22%  Similarity=0.235  Sum_probs=75.2

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |--|+.++... ++++|+++|+++++++.+++|+++.|+. +++++.+|+.+.....      .++||.|++|++...  
T Consensus       249 Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~------~~~fD~Vl~DaPCsg~G  321 (431)
T PRK14903        249 GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYV------QDTFDRILVDAPCTSLG  321 (431)
T ss_pred             cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhh------hccCCEEEECCCCCCCc
Confidence            44566666643 6789999999999999999999999986 6999999998753222      457999999986521  


Q ss_pred             -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                             ..++++.+.++|+|||.+++..+..
T Consensus       322 ~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        322 TARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             cccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence                                   1345778889999999999988764

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.37  E-value=5.8e-12  Score=90.84  Aligned_cols=89  Identities=18%  Similarity=0.187  Sum_probs=75.8

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      .|..+..++...|+++|+++|+++++++.|+++++..+++ +++++.+|+.+...        .++||+|+++.. ..+.
T Consensus        56 tG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~--------~~~fDlV~~~~~-~~~~  125 (187)
T PRK00107         56 AGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ--------EEKFDVVTSRAV-ASLS  125 (187)
T ss_pred             CCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC--------CCCccEEEEccc-cCHH
Confidence            3666777777778999999999999999999999999986 49999999987421        358999999863 4578


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      .+++.+.++|+|||.+++.
T Consensus       126 ~~l~~~~~~LkpGG~lv~~  144 (187)
T PRK00107        126 DLVELCLPLLKPGGRFLAL  144 (187)
T ss_pred             HHHHHHHHhcCCCeEEEEE
Confidence            8999999999999999975

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.37  E-value=2.9e-11  Score=87.03  Aligned_cols=90  Identities=22%  Similarity=0.183  Sum_probs=75.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..++...|+++|+++|+++++++.|++|+++.++. +++++.+|+...   +      .++||+||++.....+..
T Consensus        43 G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~---~------~~~~D~v~~~~~~~~~~~  112 (187)
T PRK08287         43 GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE---L------PGKADAIFIGGSGGNLTA  112 (187)
T ss_pred             CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh---c------CcCCCEEEECCCccCHHH
Confidence            656666777778899999999999999999999998875 799999997532   1      357999999876666788


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 031568           82 YHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +++.+.+.|+|||.+++..+
T Consensus       113 ~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287        113 IIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             HHHHHHHhcCCCeEEEEEEe
Confidence            89999999999999998654

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.37  E-value=3.4e-11  Score=95.92  Aligned_cols=86  Identities=21%  Similarity=0.358  Sum_probs=71.1

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC------------ccc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK------------DNY   79 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~------------~~~   79 (157)
                      +..+|+++|+++.+++.|++|++.+|++ ++++++++|+.++++.+..   ..++||+|++|++.            ..|
T Consensus       242 ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~---~~~~fDlVilDPP~f~~~k~~l~~~~~~y  318 (396)
T PRK15128        242 GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---RGEKFDVIVMDPPKFVENKSQLMGACRGY  318 (396)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh---cCCCCCEEEECCCCCCCChHHHHHHHHHH
Confidence            4569999999999999999999999986 5899999999999876531   14579999999863            236


Q ss_pred             HHHHHHHHhcccCCeEEEEecc
Q 031568           80 CNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .+++..+.++|+|||++++-.+
T Consensus       319 ~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        319 KDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             HHHHHHHHHHcCCCeEEEEEeC
Confidence            6677788899999999987543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.36  E-value=1.3e-11  Score=89.71  Aligned_cols=90  Identities=20%  Similarity=0.233  Sum_probs=75.2

Q ss_pred             HHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568            6 KLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE   84 (157)
Q Consensus         6 ~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~   84 (157)
                      ..++.. .+.++|+++|+++++++.|++|++.+++.++++++.+|+.+.++..      .++||+||++.....+..+++
T Consensus        56 ~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~~~~D~V~~~~~~~~~~~~l~  129 (198)
T PRK00377         56 VEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------NEKFDRIFIGGGSEKLKEIIS  129 (198)
T ss_pred             HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------CCCCCEEEECCCcccHHHHHH
Confidence            334433 3578999999999999999999999987678999999998877643      468999999876667788999


Q ss_pred             HHHhcccCCeEEEEecc
Q 031568           85 RLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        85 ~~~~~L~~gG~iv~~~~  101 (157)
                      .+.+.|+|||.++++.+
T Consensus       130 ~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        130 ASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             HHHHHcCCCcEEEEEee
Confidence            99999999999998654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.36  E-value=8.3e-12  Score=83.40  Aligned_cols=91  Identities=20%  Similarity=0.145  Sum_probs=75.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..++...|+.+|+++|+++.+++.++++++..+.. +++++.+|+.+.++..      .++||.|+++.....+..
T Consensus        31 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~D~v~~~~~~~~~~~  103 (124)
T TIGR02469        31 GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS------LPEPDRVFIGGSGGLLQE  103 (124)
T ss_pred             CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh------cCCCCEEEECCcchhHHH
Confidence            445556776778899999999999999999999998875 7999999987544332      358999999876666788


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      +++.+.+.|+|||.+++.
T Consensus       104 ~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469       104 ILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             HHHHHHHHcCCCCEEEEE
Confidence            999999999999999985

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.34  E-value=6.7e-11  Score=89.67  Aligned_cols=94  Identities=17%  Similarity=0.140  Sum_probs=73.2

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |--|+.++... +.++|+++|+++.+++.+++|++++|+. +++++.+|+..... .      .++||.|++|++...  
T Consensus        83 G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~-~------~~~fD~Vl~D~Pcsg~G  154 (264)
T TIGR00446        83 GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGA-A------VPKFDAILLDAPCSGEG  154 (264)
T ss_pred             hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhh-h------ccCCCEEEEcCCCCCCc
Confidence            44455566644 4679999999999999999999999985 69999999976532 1      356999999985432  


Q ss_pred             -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                             ..++++.+.++|+|||++++..+..
T Consensus       155 ~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       155 VIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             ccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence                                   1347778889999999999987654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.34  E-value=4e-11  Score=97.01  Aligned_cols=95  Identities=22%  Similarity=0.239  Sum_probs=75.6

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |..|+.++... ++++|+++|+++.+++.+++|+++.|+. +++++++|+.+..+.+      .++||+|++|++...  
T Consensus       262 G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~------~~~fD~Vl~D~Pcsg~G  334 (444)
T PRK14902        262 GGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKF------AEKFDKILVDAPCSGLG  334 (444)
T ss_pred             CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchh------cccCCEEEEcCCCCCCe
Confidence            55566667654 6889999999999999999999999986 5999999998764333      357999999985321  


Q ss_pred             -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                             ..++++.+.++|+|||.+++.++..
T Consensus       335 ~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        335 VIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             eeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence                                   1346788889999999999877654

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.34  E-value=1.6e-11  Score=81.53  Aligned_cols=91  Identities=24%  Similarity=0.450  Sum_probs=71.3

Q ss_pred             cccHHHHHh--hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--
Q 031568            2 HLPTKLFMT--GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--   77 (157)
Q Consensus         2 g~st~~l~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--   77 (157)
                      |..+..++.  .. ..+++++|++|..++.++++++..++.++++++++|+.+..+.+     ..++||+|+.|++..  
T Consensus        10 G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~Iv~npP~~~~   83 (117)
T PF13659_consen   10 GSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLIVTNPPYGPR   83 (117)
T ss_dssp             TTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEEEE--STTSB
T ss_pred             chHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEEEECCCCccc
Confidence            334444333  43 69999999999999999999999999889999999999887544     267899999998532  


Q ss_pred             ---------ccHHHHHHHHhcccCCeEEEE
Q 031568           78 ---------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 ---------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                               .+..+++.+.++|+|||++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   84 SGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             TT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence                     245778999999999999986

...

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.34  E-value=4.3e-11  Score=96.38  Aligned_cols=129  Identities=22%  Similarity=0.246  Sum_probs=92.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      |..|+.++...++++|+++|+++++++.+++|+++.|+.  ++++.+|+.+.....     ..++||.|++|++...   
T Consensus       256 G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~-----~~~~fD~Vl~D~Pcs~~G~  328 (427)
T PRK10901        256 GGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWW-----DGQPFDRILLDAPCSATGV  328 (427)
T ss_pred             ChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhc-----ccCCCCEEEECCCCCcccc
Confidence            556777777666689999999999999999999999874  789999997643222     1467999999986421   


Q ss_pred             ----------------------cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 031568           79 ----------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD  136 (157)
Q Consensus        79 ----------------------~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  136 (157)
                                            ...+++.+.++|+|||.+++..+...     +.+         ....++.|++   .+
T Consensus       329 ~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~-----~~E---------ne~~v~~~l~---~~  391 (427)
T PRK10901        329 IRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL-----PEE---------NEQQIKAFLA---RH  391 (427)
T ss_pred             cccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-----hhh---------CHHHHHHHHH---hC
Confidence                                  12567888899999999999876432     111         3345566643   34


Q ss_pred             CCee-----------EEeeec---CCeeEEEE
Q 031568          137 PRVQ-----------LSHVAL---GDGITICR  154 (157)
Q Consensus       137 ~~~~-----------~~~~p~---~~G~~v~~  154 (157)
                      +++.           ..++|-   +||+++|+
T Consensus       392 ~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~  423 (427)
T PRK10901        392 PDAELLDTGTPQQPGRQLLPGEEDGDGFFYAL  423 (427)
T ss_pred             CCCEEecCCCCCCCceEECCCCCCCCCeEEEE
Confidence            4432           345663   69999985

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.33  E-value=1.9e-11  Score=93.14  Aligned_cols=89  Identities=25%  Similarity=0.425  Sum_probs=68.4

Q ss_pred             HhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---------cc
Q 031568            9 MTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---------DN   78 (157)
Q Consensus         9 ~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---------~~   78 (157)
                      |+.....+|++||.+..+++.+++|++.+|++ ++++++.+|+.+++..+.+    .++||+|++||+.         ..
T Consensus       141 Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~----~~~fD~IIlDPPsF~k~~~~~~~~  216 (286)
T PF10672_consen  141 AAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK----GGRFDLIILDPPSFAKSKFDLERD  216 (286)
T ss_dssp             HHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH----TT-EEEEEE--SSEESSTCEHHHH
T ss_pred             HHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc----CCCCCEEEECCCCCCCCHHHHHHH
Confidence            33444568999999999999999999999986 6899999999999987643    4689999999863         24


Q ss_pred             cHHHHHHHHhcccCCeEEEEecc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      |..++..+.++|+|||++++-.+
T Consensus       217 y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  217 YKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             HHHHHHHHHHhcCCCCEEEEEcC
Confidence            77788889999999999887544

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.33  E-value=2.9e-11  Score=97.39  Aligned_cols=132  Identities=20%  Similarity=0.263  Sum_probs=92.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      |..|+.++...++++|+++|+++++++.+++|+++.|+..++.+..+|+.+.....     ..++||.|++|++...   
T Consensus       250 G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~-----~~~~fD~VllDaPcSg~G~  324 (426)
T TIGR00563       250 GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA-----ENEQFDRILLDAPCSATGV  324 (426)
T ss_pred             cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc-----cccccCEEEEcCCCCCCcc
Confidence            55667777766688999999999999999999999998644555777765432111     1467999999975321   


Q ss_pred             ----------------------cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 031568           79 ----------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD  136 (157)
Q Consensus        79 ----------------------~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  136 (157)
                                            ...+++.+.++|+|||.+++.++...     |++         ....++.|++   .+
T Consensus       325 ~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~-----~~E---------ne~~v~~~l~---~~  387 (426)
T TIGR00563       325 IRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL-----PEE---------NSEQIKAFLQ---EH  387 (426)
T ss_pred             cccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC-----hhh---------CHHHHHHHHH---hC
Confidence                                  13578888899999999999887542     211         4456666754   34


Q ss_pred             CCee--------------EEeeec---CCeeEEEEE
Q 031568          137 PRVQ--------------LSHVAL---GDGITICRR  155 (157)
Q Consensus       137 ~~~~--------------~~~~p~---~~G~~v~~~  155 (157)
                      |.+.              ..++|.   +||+++|+=
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l  423 (426)
T TIGR00563       388 PDFPFEKTGTPEQVRDGGLQILPHAEEGDGFFYAKL  423 (426)
T ss_pred             CCCeeccCCCccccCCCcEEECCCCCCCCCeEEEEE
Confidence            4332              245663   599998863

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.32  E-value=4.4e-11  Score=96.79  Aligned_cols=93  Identities=25%  Similarity=0.193  Sum_probs=74.3

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |-.|..++... ++++|+++|+++++++.+++|+++.|+. +|+++.+|+.+..+        .++||.|++|++...  
T Consensus       262 G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~--------~~~fD~Vl~D~Pcsg~g  332 (445)
T PRK14904        262 GGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSP--------EEQPDAILLDAPCTGTG  332 (445)
T ss_pred             CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccccc--------CCCCCEEEEcCCCCCcc
Confidence            55566666643 4679999999999999999999999985 79999999987532        467999999975321  


Q ss_pred             -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                             ...++..+.+.|+|||.+++..+..
T Consensus       333 ~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        333 VLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             hhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                                   1246788889999999999987754

>PRK00811 spermidine synthase; Provisional

Probab=99.32  E-value=9.1e-11  Score=89.78  Aligned_cols=86  Identities=19%  Similarity=0.333  Sum_probs=68.2

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--C--CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-----
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAG--V--DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----   78 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-----   78 (157)
                      +++..+..+|++||+|+++++.|++++...+  .  ++|++++.+|+.++++..      .++||+|++|...+.     
T Consensus        94 ~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~~~yDvIi~D~~dp~~~~~~  167 (283)
T PRK00811         94 VLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------ENSFDVIIVDSTDPVGPAEG  167 (283)
T ss_pred             HHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC------CCcccEEEECCCCCCCchhh
Confidence            4433346799999999999999999987642  2  468999999999988752      568999999963221     


Q ss_pred             --cHHHHHHHHhcccCCeEEEEe
Q 031568           79 --YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 --~~~~~~~~~~~L~~gG~iv~~   99 (157)
                        ..++++.+.+.|+|||+++..
T Consensus       168 l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        168 LFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             hhHHHHHHHHHHhcCCCcEEEEe
Confidence              256788999999999999974

>PRK01581 speE spermidine synthase; Validated

Probab=99.31  E-value=7.2e-11  Score=92.36  Aligned_cols=86  Identities=15%  Similarity=0.276  Sum_probs=66.4

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHH--H---HcCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPII--K---KAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~--~---~~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      +++..+..+|++||+|+++++.|+++.  .   +.++ ++|++++.+|+.++++..      .++||+|++|...+.   
T Consensus       168 lLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~------~~~YDVIIvDl~DP~~~~  241 (374)
T PRK01581        168 VLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP------SSLYDVIIIDFPDPATEL  241 (374)
T ss_pred             HHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc------CCCccEEEEcCCCccccc
Confidence            333335689999999999999999732  1   2222 479999999999998753      568999999964321   


Q ss_pred             -----cHHHHHHHHhcccCCeEEEEe
Q 031568           79 -----YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 -----~~~~~~~~~~~L~~gG~iv~~   99 (157)
                           ..++++.+.+.|+|||++++.
T Consensus       242 ~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        242 LSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             hhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence                 256889999999999999885

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.30  E-value=1.1e-10  Score=89.31  Aligned_cols=91  Identities=12%  Similarity=0.175  Sum_probs=72.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |.-+..++...|+.+|+++|+++.+++.|++|++.+++.++++++.+|+.+.++        .++||+|++|++.-    
T Consensus       133 G~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--------~~~fD~Iv~NPPy~~~~~  204 (284)
T TIGR03533       133 GCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--------GRKYDLIVSNPPYVDAED  204 (284)
T ss_pred             hHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--------CCCccEEEECCCCCCccc
Confidence            444555666778999999999999999999999999987789999999976542        45799999986420    


Q ss_pred             ------------------------ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 ------------------------NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 ------------------------~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                                              .+..++..+.++|+|||.++++.
T Consensus       205 ~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~  251 (284)
T TIGR03533       205 MADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV  251 (284)
T ss_pred             hhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                                    12455777788999999999864

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PLN02366 spermidine synthase

Probab=99.29  E-value=1.8e-10  Score=89.03  Aligned_cols=84  Identities=18%  Similarity=0.370  Sum_probs=67.8

Q ss_pred             hCC-CcEEEEEeCChhHHHHHHHHHHHc--CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------cc
Q 031568           11 GNK-ILQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NY   79 (157)
Q Consensus        11 ~~~-~~~v~~ve~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~   79 (157)
                      +.| ..+|+.||+|+.+++.|++++...  ++ ++|++++.+|+.+++....     .++||+|++|...+       ..
T Consensus       111 k~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-----~~~yDvIi~D~~dp~~~~~~L~t  185 (308)
T PLN02366        111 RHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-----EGTYDAIIVDSSDPVGPAQELFE  185 (308)
T ss_pred             hCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----CCCCCEEEEcCCCCCCchhhhhH
Confidence            445 579999999999999999998754  23 3689999999999987541     45799999997542       13


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~   99 (157)
                      .++++.+.+.|+|||+++..
T Consensus       186 ~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        186 KPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             HHHHHHHHHhcCCCcEEEEC
Confidence            57899999999999999874

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.27  E-value=3e-11  Score=89.93  Aligned_cols=92  Identities=20%  Similarity=0.286  Sum_probs=75.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |+-.++++++.+.++|++||+++++++.|++|++.+++++||+++++|..++.+...     ..+||+|+++++.     
T Consensus        56 G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-----~~~fD~Ii~NPPyf~~~~  130 (248)
T COG4123          56 GALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-----FASFDLIICNPPYFKQGS  130 (248)
T ss_pred             CHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-----ccccCEEEeCCCCCCCcc
Confidence            333344555657799999999999999999999999999999999999999987653     4579999998741     


Q ss_pred             c----------------ccHHHHHHHHhcccCCeEEEE
Q 031568           77 D----------------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        77 ~----------------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      .                ..+++++.+..+|++||.+.+
T Consensus       131 ~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~  168 (248)
T COG4123         131 RLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF  168 (248)
T ss_pred             ccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence            0                246788888899999999987

>PLN02823 spermine synthase

Probab=99.27  E-value=1.5e-10  Score=90.32  Aligned_cols=86  Identities=17%  Similarity=0.271  Sum_probs=68.2

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------   77 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------   77 (157)
                      +++..+..+|++||+|++.++.|++++...+  + ++|++++.+|+.++++..      .++||+||+|...+       
T Consensus       121 ~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------~~~yDvIi~D~~dp~~~~~~~  194 (336)
T PLN02823        121 VLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------DEKFDVIIGDLADPVEGGPCY  194 (336)
T ss_pred             HHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------CCCccEEEecCCCccccCcch
Confidence            4444457899999999999999999986532  2 478999999999999653      56899999995321       


Q ss_pred             --ccHHHHH-HHHhcccCCeEEEEe
Q 031568           78 --NYCNYHE-RLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 --~~~~~~~-~~~~~L~~gG~iv~~   99 (157)
                        ...++++ .+.+.|+|||++++.
T Consensus       195 ~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        195 QLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             hhccHHHHHHHHHHhcCCCcEEEEe
Confidence              1356787 889999999999875

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.27  E-value=2.7e-10  Score=82.60  Aligned_cols=93  Identities=15%  Similarity=0.232  Sum_probs=75.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++..+|+..++++|+++.+++.|++++.+.++. +++++++|+.+..+...    +.+++|.|+++.+.+    
T Consensus        28 G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~d~v~~~~pdpw~k~  102 (194)
T TIGR00091        28 GRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSLSKVFLNFPDPWPKK  102 (194)
T ss_pred             cHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCceeEEEEECCCcCCCC
Confidence            555666777889999999999999999999999998885 89999999998765432    245899999875321    


Q ss_pred             -------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 -------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 -------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                             ....+++.+.+.|+|||.+.+.
T Consensus       103 ~h~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091       103 RHNKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             CccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence                   1257899999999999999873

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.25  E-value=6e-11  Score=100.76  Aligned_cols=93  Identities=18%  Similarity=0.289  Sum_probs=75.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----   76 (157)
                      |..++.++.. +..+|+++|+++.+++.|++|++.+|++ ++++++++|+.++++.+      .++||+|++|++.    
T Consensus       550 G~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------~~~fDlIilDPP~f~~~  622 (702)
T PRK11783        550 GTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA------REQFDLIFIDPPTFSNS  622 (702)
T ss_pred             CHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc------CCCcCEEEECCCCCCCC
Confidence            4445444443 4557999999999999999999999986 68999999999988654      4689999999862    


Q ss_pred             ----------cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 ----------DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 ----------~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                                ..|.+++..+.++|+|||++++...
T Consensus       623 ~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        623 KRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             CccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence                      1256678888899999999988754

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.25  E-value=3.4e-11  Score=85.55  Aligned_cols=88  Identities=18%  Similarity=0.344  Sum_probs=70.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |+=++.++...|..+|+++|+++.+++.+++|++.+++++ ++++.+|..+.++        .++||+|+++++..    
T Consensus        43 G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~--------~~~fD~Iv~NPP~~~~~~  113 (170)
T PF05175_consen   43 GVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP--------DGKFDLIVSNPPFHAGGD  113 (170)
T ss_dssp             SHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC--------TTCEEEEEE---SBTTSH
T ss_pred             HHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc--------ccceeEEEEccchhcccc
Confidence            5556667777889899999999999999999999999976 9999999987543        47899999998532    


Q ss_pred             ----ccHHHHHHHHhcccCCeEEEE
Q 031568           78 ----NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 ----~~~~~~~~~~~~L~~gG~iv~   98 (157)
                          ....+++.+.++|+|||.+++
T Consensus       114 ~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen  114 DGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             CHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cchhhHHHHHHHHHHhccCCCEEEE
Confidence                245678888899999999854

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.25  E-value=1.3e-10  Score=84.28  Aligned_cols=92  Identities=18%  Similarity=0.119  Sum_probs=74.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..|..++...++++|+++|+++++++.+++|+++++.. +++++.+|+.+.++.+      ...+|.++++.. .....
T Consensus        52 G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~------~~~~d~v~~~~~-~~~~~  123 (196)
T PRK07402         52 GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQL------APAPDRVCIEGG-RPIKE  123 (196)
T ss_pred             CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhC------CCCCCEEEEECC-cCHHH
Confidence            555556665668899999999999999999999999884 7999999998765543      345789999864 34578


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 031568           82 YHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +++.+.++|+|||.+++...
T Consensus       124 ~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        124 ILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             HHHHHHHhcCCCeEEEEEee
Confidence            89999999999999998754

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.24  E-value=6.4e-11  Score=91.57  Aligned_cols=90  Identities=13%  Similarity=0.184  Sum_probs=72.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++...|+.+|+++|+++.+++.|++|++.+++.++++++++|+.+.++        .++||+|+++++.-    
T Consensus       145 G~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--------~~~fDlIvsNPPyi~~~~  216 (307)
T PRK11805        145 GCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--------GRRYDLIVSNPPYVDAED  216 (307)
T ss_pred             hHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--------CCCccEEEECCCCCCccc
Confidence            444455666778999999999999999999999999987789999999876542        35799999986310    


Q ss_pred             ------------------------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 ------------------------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 ------------------------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                                              .|..+++.+.++|+|||.++++
T Consensus       217 ~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        217 MADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             hhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                                    1345677788899999999986

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.24  E-value=5.5e-11  Score=86.92  Aligned_cols=88  Identities=16%  Similarity=0.210  Sum_probs=71.8

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..|..++... +.++|+++|+++++++.|++|+++.+..++++++.+|+.+.++.       .++||.|+++...... 
T Consensus        84 G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-------~~~fD~Ii~~~~~~~~-  155 (205)
T PRK13944         84 GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-------HAPFDAIIVTAAASTI-  155 (205)
T ss_pred             cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-------CCCccEEEEccCcchh-
Confidence            66777777654 47899999999999999999999999877899999999875432       4589999999765443 


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                        .+.+.+.|+|||.+++.
T Consensus       156 --~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        156 --PSALVRQLKDGGVLVIP  172 (205)
T ss_pred             --hHHHHHhcCcCcEEEEE
Confidence              35677899999999885

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.23  E-value=2.2e-10  Score=83.61  Aligned_cols=94  Identities=17%  Similarity=0.243  Sum_probs=74.9

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---   77 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---   77 (157)
                      .|..|..++...|+.+|+++|+++++++.|+++++..++ ++++++++|+.+.++...    ..++||.|++....+   
T Consensus        51 tG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~----~~~~~D~V~~~~~~p~~~  125 (202)
T PRK00121         51 KGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMF----PDGSLDRIYLNFPDPWPK  125 (202)
T ss_pred             CCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHc----CccccceEEEECCCCCCC
Confidence            366777787777889999999999999999999999887 479999999955554321    256899999853211   


Q ss_pred             --------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 --------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 --------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                              ....+++.+.+.|+|||.+++.
T Consensus       126 ~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121        126 KRHHKRRLVQPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             ccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence                    1467899999999999999874

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=9.2e-11  Score=87.00  Aligned_cols=84  Identities=18%  Similarity=0.254  Sum_probs=73.4

Q ss_pred             HHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568            5 TKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH   83 (157)
Q Consensus         5 t~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~   83 (157)
                      |++|+. -.|.++|+++|+.++.++.|++|+++.++.+++++..+|+.+...        ++.||.||+|-+  ...+++
T Consensus       109 t~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--------~~~vDav~LDmp--~PW~~l  178 (256)
T COG2519         109 TAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--------EEDVDAVFLDLP--DPWNVL  178 (256)
T ss_pred             HHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--------ccccCEEEEcCC--ChHHHH
Confidence            445554 458899999999999999999999999999889999999998754        458999999975  568899


Q ss_pred             HHHHhcccCCeEEEE
Q 031568           84 ERLMKLLKVGGIAVY   98 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~   98 (157)
                      +.+.+.|+|||.+++
T Consensus       179 e~~~~~Lkpgg~~~~  193 (256)
T COG2519         179 EHVSDALKPGGVVVV  193 (256)
T ss_pred             HHHHHHhCCCcEEEE
Confidence            999999999999987

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.21  E-value=9.9e-11  Score=87.00  Aligned_cols=94  Identities=17%  Similarity=0.249  Sum_probs=78.9

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---c
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---D   77 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~   77 (157)
                      +|-.|..++...+.++|+++|+++.|++.|++.+...+... +++++|||.+. | +     ++++||+|.+....   .
T Consensus        62 TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f-----~D~sFD~vt~~fglrnv~  133 (238)
T COG2226          62 TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-F-----PDNSFDAVTISFGLRNVT  133 (238)
T ss_pred             ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-C-----CCCccCEEEeeehhhcCC
Confidence            35567778887789999999999999999999999988875 99999999864 5 3     37899999987643   3


Q ss_pred             ccHHHHHHHHhcccCCeEEEEeccc
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      +++..++++.|.|+|||.+++-+..
T Consensus       134 d~~~aL~E~~RVlKpgG~~~vle~~  158 (238)
T COG2226         134 DIDKALKEMYRVLKPGGRLLVLEFS  158 (238)
T ss_pred             CHHHHHHHHHHhhcCCeEEEEEEcC
Confidence            5788899999999999999886543

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.21  E-value=7.7e-11  Score=86.61  Aligned_cols=88  Identities=22%  Similarity=0.243  Sum_probs=70.8

Q ss_pred             CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|+.|..++... ++++|+++|+++++++.|+++++..+.. +++++.+|+.+..+       ..++||+|++++.....
T Consensus        87 sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~-------~~~~fD~I~~~~~~~~~  158 (212)
T PRK13942         87 SGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYE-------ENAPYDRIYVTAAGPDI  158 (212)
T ss_pred             ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC-------cCCCcCEEEECCCcccc
Confidence            367777777653 5689999999999999999999999874 89999999876532       14689999998865544


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~   99 (157)
                      +   +.+.+.|+|||.+++.
T Consensus       159 ~---~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        159 P---KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             h---HHHHHhhCCCcEEEEE
Confidence            3   4567789999999884

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.20  E-value=1e-10  Score=81.39  Aligned_cols=94  Identities=24%  Similarity=0.299  Sum_probs=76.1

Q ss_pred             cccHHHHH-hhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---c
Q 031568            2 HLPTKLFM-TGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---D   77 (157)
Q Consensus         2 g~st~~l~-~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~   77 (157)
                      |..+..++ ..+|+++++++|+++++++.|++++++.+.. +++++++|+.+ ++...     .++||+|++.+..   .
T Consensus        15 G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~D~I~~~~~l~~~~   87 (152)
T PF13847_consen   15 GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKFDIIISNGVLHHFP   87 (152)
T ss_dssp             SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTEEEEEEESTGGGTS
T ss_pred             cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCeeEEEEcCchhhcc
Confidence            55555666 3568999999999999999999999999987 89999999998 54210     2689999998642   3


Q ss_pred             ccHHHHHHHHhcccCCeEEEEeccc
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      .....++.+.++|+++|++++....
T Consensus        88 ~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   88 DPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHcCCCcEEEEEECC
Confidence            3456789999999999999987654

...

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.19  E-value=6.7e-11  Score=85.76  Aligned_cols=86  Identities=20%  Similarity=0.137  Sum_probs=73.5

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD   77 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~   77 (157)
                      .|.||.+|+.++|++.|+++|.|++|++.|++.+      .+++|..+|+.++-+        +.+.|++|.++.   .+
T Consensus        41 pGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p--------~~~~dllfaNAvlqWlp  106 (257)
T COG4106          41 PGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP--------EQPTDLLFANAVLQWLP  106 (257)
T ss_pred             CCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------CCccchhhhhhhhhhcc
Confidence            3889999999999999999999999999996643      468999999999854        568999999874   34


Q ss_pred             ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      .-.+.|..+...|.|||++.+..
T Consensus       107 dH~~ll~rL~~~L~Pgg~LAVQm  129 (257)
T COG4106         107 DHPELLPRLVSQLAPGGVLAVQM  129 (257)
T ss_pred             ccHHHHHHHHHhhCCCceEEEEC
Confidence            45678899999999999999853

>TIGR00417 speE spermidine synthase

Probab=99.19  E-value=1.1e-09  Score=83.39  Aligned_cols=86  Identities=20%  Similarity=0.338  Sum_probs=68.3

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----c-
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----N-   78 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----~-   78 (157)
                      +++..+..+++++|+++++++.|++++...+  . .++++++.+|+.++++..      .++||+|++|...+     . 
T Consensus        90 ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------~~~yDvIi~D~~~~~~~~~~l  163 (270)
T TIGR00417        90 VLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------ENTFDVIIVDSTDPVGPAETL  163 (270)
T ss_pred             HHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------CCCccEEEEeCCCCCCcccch
Confidence            3333346799999999999999999986643  1 357999999999998754      56899999997421     1 


Q ss_pred             -cHHHHHHHHhcccCCeEEEEe
Q 031568           79 -YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 -~~~~~~~~~~~L~~gG~iv~~   99 (157)
                       ..++++.+.++|+|||++++.
T Consensus       164 ~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       164 FTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             hHHHHHHHHHHHhCCCcEEEEc
Confidence             357788999999999999985

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=5.9e-10  Score=87.77  Aligned_cols=95  Identities=22%  Similarity=0.252  Sum_probs=73.1

Q ss_pred             cHHHHHhhC--CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568            4 PTKLFMTGN--KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         4 st~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      =|+.+++..  ++..|+++|+++..++..++|+++.|+. ++.+++.|+........    ..++||.|++|++++.   
T Consensus       170 KTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~----~~~~fD~iLlDaPCSg~G~  244 (355)
T COG0144         170 KTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLP----GGEKFDRILLDAPCSGTGV  244 (355)
T ss_pred             HHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccccccccc----ccCcCcEEEECCCCCCCcc
Confidence            356666643  3577799999999999999999999997 58888888875543321    1236999999986432   


Q ss_pred             ----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 ----------------------YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 ----------------------~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                            -.++++.+.++|+|||+||+.+|..
T Consensus       245 irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         245 IRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             cccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence                                  1357788889999999999998865

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.18  E-value=5.2e-10  Score=90.80  Aligned_cols=93  Identities=19%  Similarity=0.182  Sum_probs=74.4

Q ss_pred             cHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc----
Q 031568            4 PTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----   78 (157)
Q Consensus         4 st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~----   78 (157)
                      -|+.+++.. ..+.|+++|+++..++.+++|+++.|+. ++.+...|+.+..+.+      .+.||.|++|++++.    
T Consensus       127 KTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~------~~~fD~ILvDaPCSG~G~~  199 (470)
T PRK11933        127 KTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAAL------PETFDAILLDAPCSGEGTV  199 (470)
T ss_pred             HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhc------hhhcCeEEEcCCCCCCccc
Confidence            355556543 5689999999999999999999999996 7999999998754433      457999999986541    


Q ss_pred             ---------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 ---------------------YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 ---------------------~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                           -.++++.+.++|+|||+||+.+|..
T Consensus       200 rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        200 RKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             ccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence                                 1356778889999999999988865

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.18  E-value=7.4e-11  Score=86.44  Aligned_cols=88  Identities=19%  Similarity=0.255  Sum_probs=71.2

Q ss_pred             CcccHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|+.|++++. ..+.++|++||+++..++.|+++++..+.. +|+++++|...-.+.       ..+||.|++.+..+..
T Consensus        83 sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~-------~apfD~I~v~~a~~~i  154 (209)
T PF01135_consen   83 SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPE-------EAPFDRIIVTAAVPEI  154 (209)
T ss_dssp             TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGG-------G-SEEEEEESSBBSS-
T ss_pred             CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhcccc-------CCCcCEEEEeeccchH
Confidence            4888999888 456789999999999999999999999986 899999999876543       4689999999876554


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~   99 (157)
                      +   ....+.|++||++|+-
T Consensus       155 p---~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  155 P---EALLEQLKPGGRLVAP  171 (209)
T ss_dssp             ----HHHHHTEEEEEEEEEE
T ss_pred             H---HHHHHhcCCCcEEEEE
Confidence            4   4456789999999983

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.17  E-value=6.5e-10  Score=79.91  Aligned_cols=88  Identities=25%  Similarity=0.402  Sum_probs=68.4

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---cHHHHHHHH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---YCNYHERLM   87 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---~~~~~~~~~   87 (157)
                      .+...+|++||.+++.++.+++|++..+..++++++.+|+...++++..   ...+||+||+||+...   +.+.++.+.
T Consensus        62 SRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---~~~~fDiIflDPPY~~~~~~~~~l~~l~  138 (183)
T PF03602_consen   62 SRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---KGEKFDIIFLDPPYAKGLYYEELLELLA  138 (183)
T ss_dssp             HTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH---CTS-EEEEEE--STTSCHHHHHHHHHHH
T ss_pred             hcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc---cCCCceEEEECCCcccchHHHHHHHHHH
Confidence            4567899999999999999999999999988899999999999877632   2578999999997432   356777766


Q ss_pred             --hcccCCeEEEEecc
Q 031568           88 --KLLKVGGIAVYDNT  101 (157)
Q Consensus        88 --~~L~~gG~iv~~~~  101 (157)
                        .+|+++|+|+++..
T Consensus       139 ~~~~l~~~~~ii~E~~  154 (183)
T PF03602_consen  139 ENNLLNEDGLIIIEHS  154 (183)
T ss_dssp             HTTSEEEEEEEEEEEE
T ss_pred             HCCCCCCCEEEEEEec
Confidence              69999999999764

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.17  E-value=1.7e-10  Score=84.91  Aligned_cols=88  Identities=19%  Similarity=0.205  Sum_probs=71.1

Q ss_pred             CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|..|..++... +.++|+++|+++++++.|++++++.++ ++++++.+|+.+..+.       .++||+|++++.....
T Consensus        88 sG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~-------~~~fD~Ii~~~~~~~~  159 (215)
T TIGR00080        88 SGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP-------LAPYDRIYVTAAGPKI  159 (215)
T ss_pred             ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc-------cCCCCEEEEcCCcccc
Confidence            367777777754 468999999999999999999999998 4899999999765432       3589999999865444


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~   99 (157)
                         .+.+.+.|+|||++++.
T Consensus       160 ---~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       160 ---PEALIDQLKEGGILVMP  176 (215)
T ss_pred             ---cHHHHHhcCcCcEEEEE
Confidence               35567889999999884

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.16  E-value=1.3e-10  Score=86.48  Aligned_cols=92  Identities=17%  Similarity=0.227  Sum_probs=67.1

Q ss_pred             CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---
Q 031568            1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---   76 (157)
Q Consensus         1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---   76 (157)
                      +|..|..++... |.++|+++|+++.|++.|++.++..+.. +|+++++|+.+. +.      ++++||.|++-...   
T Consensus        58 tG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p~------~d~sfD~v~~~fglrn~  129 (233)
T PF01209_consen   58 TGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-PF------PDNSFDAVTCSFGLRNF  129 (233)
T ss_dssp             TSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S-------TT-EEEEEEES-GGG-
T ss_pred             hHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-cC------CCCceeEEEHHhhHHhh
Confidence            466666677654 6899999999999999999999998876 899999999874 42      26899999986533   


Q ss_pred             cccHHHHHHHHhcccCCeEEEEec
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ++....++++.+.|+|||.+++-+
T Consensus       130 ~d~~~~l~E~~RVLkPGG~l~ile  153 (233)
T PF01209_consen  130 PDRERALREMYRVLKPGGRLVILE  153 (233)
T ss_dssp             SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHcCCCeEEEEee
Confidence            346778999999999999988743

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.15  E-value=4.7e-10  Score=84.54  Aligned_cols=89  Identities=18%  Similarity=0.191  Sum_probs=71.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++..  +.+|+++|+++++++.|+++++..|+.++++++++|+.+..+..      .++||+|++...   ...
T Consensus        56 G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~fD~V~~~~vl~~~~~  127 (255)
T PRK11036         56 GQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPVDLILFHAVLEWVAD  127 (255)
T ss_pred             hHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCCCEEEehhHHHhhCC
Confidence            4444455543  68999999999999999999999998788999999998864322      568999998753   234


Q ss_pred             cHHHHHHHHhcccCCeEEEE
Q 031568           79 YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~   98 (157)
                      ...+++.+.++|+|||++++
T Consensus       128 ~~~~l~~~~~~LkpgG~l~i  147 (255)
T PRK11036        128 PKSVLQTLWSVLRPGGALSL  147 (255)
T ss_pred             HHHHHHHHHHHcCCCeEEEE
Confidence            56789999999999999976

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.14  E-value=2.8e-09  Score=80.06  Aligned_cols=82  Identities=17%  Similarity=0.275  Sum_probs=66.3

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCC---CCcEEEEEccHHHHHHHHhhcCCCCC-ceeEEEEcCCCc-------ccHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYSENEG-SFDYAFVDADKD-------NYCN   81 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~l~~~~~~~~~~~-~fD~I~iD~~~~-------~~~~   81 (157)
                      +..+|++||+||..++.|++++.....   ++|++++.+|+..++.+.      .+ +||+|++|...+       ...+
T Consensus        99 ~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------~~~~yDvIi~D~~dp~~~~~~l~t~e  172 (246)
T PF01564_consen   99 PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------QEEKYDVIIVDLTDPDGPAPNLFTRE  172 (246)
T ss_dssp             T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------SST-EEEEEEESSSTTSCGGGGSSHH
T ss_pred             CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------cCCcccEEEEeCCCCCCCcccccCHH
Confidence            478999999999999999999876432   479999999999999864      34 899999997432       1368


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      +++.+.+.|+|+|+++...
T Consensus       173 f~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  173 FYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             HHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhhcCCCcEEEEEc
Confidence            9999999999999999864

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.13  E-value=2.1e-09  Score=82.01  Aligned_cols=90  Identities=20%  Similarity=0.296  Sum_probs=73.5

Q ss_pred             cHHH-HHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-c
Q 031568            4 PTKL-FMTGNKILQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-N   78 (157)
Q Consensus         4 st~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-~   78 (157)
                      +|+. +++..+-.+++.||+|++.++.+++.+....  . ++|++++.+|+.++++..      .++||+|++|...+ .
T Consensus        89 ~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------~~~fDvIi~D~tdp~g  162 (282)
T COG0421          89 GTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------EEKFDVIIVDSTDPVG  162 (282)
T ss_pred             HHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------CCcCCEEEEcCCCCCC
Confidence            3444 3334568899999999999999999997643  3 479999999999999865      34899999997433 2


Q ss_pred             ------cHHHHHHHHhcccCCeEEEEe
Q 031568           79 ------YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ------~~~~~~~~~~~L~~gG~iv~~   99 (157)
                            ..++++.|.+.|+++|++++.
T Consensus       163 p~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         163 PAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             cccccCCHHHHHHHHHhcCCCcEEEEe
Confidence                  378999999999999999997

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.8e-10  Score=83.58  Aligned_cols=85  Identities=18%  Similarity=0.205  Sum_probs=71.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.|+.|+.-  .++|+++|+.++.++.|++|++..|+. +|.+++||...-.+.       ..+||.|++.+..+..+ 
T Consensus        84 GY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~-------~aPyD~I~Vtaaa~~vP-  152 (209)
T COG2518          84 GYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPE-------EAPYDRIIVTAAAPEVP-  152 (209)
T ss_pred             hHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCC-------CCCcCEEEEeeccCCCC-
Confidence            6888888874  339999999999999999999999997 599999999887653       57899999998765554 


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                        +.+.+.|++||++++-
T Consensus       153 --~~Ll~QL~~gGrlv~P  168 (209)
T COG2518         153 --EALLDQLKPGGRLVIP  168 (209)
T ss_pred             --HHHHHhcccCCEEEEE
Confidence              3557889999999983

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.10  E-value=7.5e-10  Score=84.76  Aligned_cols=92  Identities=15%  Similarity=0.153  Sum_probs=72.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |.-+..++...|+.+|+++|+++++++.|++|++..++.++++++.+|+.+.++        ..+||+|+++++.-    
T Consensus       126 G~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--------~~~fDlIvsNPPyi~~~~  197 (284)
T TIGR00536       126 GCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--------GQKIDIIVSNPPYIDEED  197 (284)
T ss_pred             hHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--------CCCccEEEECCCCCCcch
Confidence            333445666678899999999999999999999999987679999999876432        34799999985310    


Q ss_pred             ------------------------ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 ------------------------NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 ------------------------~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                                              .+..+++.+.++|+|||+++++..
T Consensus       198 ~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g  245 (284)
T TIGR00536       198 LADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG  245 (284)
T ss_pred             hhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence                                    134567777889999999998754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.09  E-value=3e-09  Score=77.42  Aligned_cols=82  Identities=15%  Similarity=0.156  Sum_probs=64.6

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-Ccc-cHHHHHHHHh--
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-KDN-YCNYHERLMK--   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-~~~-~~~~~~~~~~--   88 (157)
                      ...+|+++|+++++++.+++|++.++.+ +++++.+|+.+.++..      .++||+||+|++ ... +...++.+..  
T Consensus        75 ~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~  147 (199)
T PRK10909         75 YAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQP------GTPHNVVFVDPPFRKGLLEETINLLEDNG  147 (199)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhc------CCCceEEEECCCCCCChHHHHHHHHHHCC
Confidence            3579999999999999999999999875 7999999999877532      346999999998 333 3344454443  


Q ss_pred             cccCCeEEEEecc
Q 031568           89 LLKVGGIAVYDNT  101 (157)
Q Consensus        89 ~L~~gG~iv~~~~  101 (157)
                      +|+|+++++++..
T Consensus       148 ~l~~~~iv~ve~~  160 (199)
T PRK10909        148 WLADEALIYVESE  160 (199)
T ss_pred             CcCCCcEEEEEec
Confidence            5789999988743

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.08  E-value=1.9e-10  Score=72.97  Aligned_cols=85  Identities=20%  Similarity=0.262  Sum_probs=66.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++.. ++.+++++|+++++++.+++.....    ++.++.+|+.+. + +     ++++||+|++...   .+.
T Consensus         8 G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~-~-----~~~sfD~v~~~~~~~~~~~   75 (95)
T PF08241_consen    8 GRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-P-F-----PDNSFDVVFSNSVLHHLED   75 (95)
T ss_dssp             SHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-S-S------TT-EEEEEEESHGGGSSH
T ss_pred             CHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-c-c-----ccccccccccccceeeccC
Confidence            5566667766 8999999999999999999977543    456999998776 3 2     2689999998652   245


Q ss_pred             cHHHHHHHHhcccCCeEEEE
Q 031568           79 YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~   98 (157)
                      ...+++++.+.|||||.+++
T Consensus        76 ~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   76 PEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCcCeEEeC
Confidence            67889999999999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.07  E-value=2.7e-09  Score=76.30  Aligned_cols=87  Identities=21%  Similarity=0.282  Sum_probs=68.6

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHH--
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERL--   86 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~--   86 (157)
                      .+...+++.||.|.+.+.++++|++..+...+.+++..|+..+++++.    ..++||+||+|++..  .+.......  
T Consensus        63 SRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~----~~~~FDlVflDPPy~~~l~~~~~~~~~~  138 (187)
T COG0742          63 SRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG----TREPFDLVFLDPPYAKGLLDKELALLLL  138 (187)
T ss_pred             hCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC----CCCcccEEEeCCCCccchhhHHHHHHHH
Confidence            446789999999999999999999999988899999999998887763    123599999999744  221122222  


Q ss_pred             --HhcccCCeEEEEecc
Q 031568           87 --MKLLKVGGIAVYDNT  101 (157)
Q Consensus        87 --~~~L~~gG~iv~~~~  101 (157)
                        ..+|+|+|+++++.-
T Consensus       139 ~~~~~L~~~~~iv~E~~  155 (187)
T COG0742         139 EENGWLKPGALIVVEHD  155 (187)
T ss_pred             HhcCCcCCCcEEEEEeC
Confidence              268999999999754

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.06  E-value=1.5e-09  Score=85.91  Aligned_cols=90  Identities=11%  Similarity=0.084  Sum_probs=72.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--   77 (157)
                      |.-+..++..+|+.+|+++|.++.+++.|++|++.++..  .+++++.+|+.+.++        .++||+|+++++..  
T Consensus       240 Gvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~~fDlIlsNPPfh~~  311 (378)
T PRK15001        240 GVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRFNAVLCNPPFHQQ  311 (378)
T ss_pred             cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CCCEEEEEECcCcccC
Confidence            556667777889999999999999999999999988753  378999999865432        45799999987532  


Q ss_pred             ------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 ------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 ------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                            ....++..+.+.|+|||.+.+.
T Consensus       312 ~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        312 HALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             ccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence                  1245788888999999998875

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.05  E-value=6.1e-09  Score=75.27  Aligned_cols=87  Identities=11%  Similarity=-0.005  Sum_probs=68.1

Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHH--
Q 031568           12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM--   87 (157)
Q Consensus        12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~--   87 (157)
                      ....+|+++|.++.+++.+++|++.++..++++++.+|+.+.++.+.+   ....||+||.||+..  .+.+.++.+.  
T Consensus        70 rga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~---~~~~~dvv~~DPPy~~~~~~~~l~~l~~~  146 (189)
T TIGR00095        70 RGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK---KPTFDNVIYLDPPFFNGALQALLELCENN  146 (189)
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc---cCCCceEEEECcCCCCCcHHHHHHHHHHC
Confidence            344589999999999999999999999877899999999988765421   123489999999643  3455565554  


Q ss_pred             hcccCCeEEEEecc
Q 031568           88 KLLKVGGIAVYDNT  101 (157)
Q Consensus        88 ~~L~~gG~iv~~~~  101 (157)
                      .+|+++|+++++..
T Consensus       147 ~~l~~~~iiv~E~~  160 (189)
T TIGR00095       147 WILEDTVLIVVEED  160 (189)
T ss_pred             CCCCCCeEEEEEec
Confidence            47999999999754

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.04  E-value=1.6e-09  Score=81.27  Aligned_cols=91  Identities=14%  Similarity=0.102  Sum_probs=71.2

Q ss_pred             cccHHHHHh--hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC----
Q 031568            2 HLPTKLFMT--GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD----   75 (157)
Q Consensus         2 g~st~~l~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~----   75 (157)
                      |..+..++.  ..|+.+++++|+++.+++.|+++++..+...+++++.+|+.+..         .+.+|+|++...    
T Consensus        68 G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D~vv~~~~l~~l  138 (247)
T PRK15451         68 GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IENASMVVLNFTLQFL  138 (247)
T ss_pred             CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCCCCEEehhhHHHhC
Confidence            444555555  35899999999999999999999999888778999999987641         345999887532    


Q ss_pred             -CcccHHHHHHHHhcccCCeEEEEecc
Q 031568           76 -KDNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        76 -~~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                       ......+++.+.+.|+|||.+++.+.
T Consensus       139 ~~~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        139 EPSERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence             11235688999999999999988653

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.04  E-value=1.1e-09  Score=89.97  Aligned_cols=90  Identities=17%  Similarity=0.210  Sum_probs=71.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++...|+++|+++|+|+.+++.|++|++.+++.++++++.+|+.+.++        .++||+|+++++.-    
T Consensus       150 G~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDlIvsNPPYi~~~~  221 (506)
T PRK01544        150 GCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDFIVSNPPYISHSE  221 (506)
T ss_pred             hHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccEEEECCCCCCchh
Confidence            444555666778999999999999999999999999988889999999876432        45799999976310    


Q ss_pred             -------------------------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 -------------------------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 -------------------------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                                               .|..+++.+.++|+|||.++++
T Consensus       222 ~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        222 KSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             hhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence                                     1334566677899999999986

>PRK03612 spermidine synthase; Provisional

Probab=99.03  E-value=2.9e-09  Score=87.83  Aligned_cols=92  Identities=18%  Similarity=0.306  Sum_probs=69.0

Q ss_pred             cccHHHHHhhCCC-cEEEEEeCChhHHHHHHHH--HHHc---CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKI-LQITAIDVNRETYEIGLPI--IKKA---GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~-~~v~~ve~~~~~~~~a~~~--~~~~---~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |..+..+++ .+. .+|++||+|+++++.++++  +...   .. +++++++.+|+.++++..      .++||+|++|.
T Consensus       309 G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~------~~~fDvIi~D~  381 (521)
T PRK03612        309 GLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL------AEKFDVIIVDL  381 (521)
T ss_pred             cHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC------CCCCCEEEEeC
Confidence            433434443 455 8999999999999999994  3321   12 368999999999988753      46899999997


Q ss_pred             CCcc--------cHHHHHHHHhcccCCeEEEEec
Q 031568           75 DKDN--------YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        75 ~~~~--------~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ..+.        ..++++.+.++|+|||++++..
T Consensus       382 ~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        382 PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             CCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            4321        2468889999999999999864

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.02  E-value=2.1e-09  Score=79.61  Aligned_cols=91  Identities=18%  Similarity=0.350  Sum_probs=71.7

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD   77 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~   77 (157)
                      |..+..++... ++++|+++|+++++++.|+++++..+. ++++++.+|+.+. + +     +.++||+|++...   .+
T Consensus        57 G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~-----~~~~fD~V~~~~~l~~~~  128 (231)
T TIGR02752        57 ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL-P-F-----DDNSFDYVTIGFGLRNVP  128 (231)
T ss_pred             CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC-C-C-----CCCCccEEEEecccccCC
Confidence            44455566554 678999999999999999999988877 4899999999764 2 1     2568999998643   34


Q ss_pred             ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      .+...++.+.+.|+|||.+++-+
T Consensus       129 ~~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       129 DYMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             CHHHHHHHHHHHcCcCeEEEEEE
Confidence            56778899999999999998743

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.02  E-value=4.4e-09  Score=83.28  Aligned_cols=91  Identities=18%  Similarity=0.167  Sum_probs=75.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      |..+..+|..+|+..++++|+++.+++.|.+++...++. ++.++.+|+.+.+..+     +.+++|.|++..+.+.   
T Consensus       134 G~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~D~I~lnFPdPW~Kk  207 (390)
T PRK14121        134 GRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSVEKIFVHFPVPWDKK  207 (390)
T ss_pred             cHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCceeEEEEeCCCCcccc
Confidence            556677888889999999999999999999999999986 7999999998876544     2678999998643221   


Q ss_pred             ------cHHHHHHHHhcccCCeEEEE
Q 031568           79 ------YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 ------~~~~~~~~~~~L~~gG~iv~   98 (157)
                            ...+++.+.+.|+|||.+.+
T Consensus       208 rHRRlv~~~fL~e~~RvLkpGG~l~l  233 (390)
T PRK14121        208 PHRRVISEDFLNEALRVLKPGGTLEL  233 (390)
T ss_pred             chhhccHHHHHHHHHHHcCCCcEEEE
Confidence                  25789999999999999887

>PLN02244 tocopherol O-methyltransferase

Probab=99.01  E-value=1.8e-09  Score=84.63  Aligned_cols=92  Identities=13%  Similarity=0.218  Sum_probs=73.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++... +.+|+++|+++.+++.|+++.+..++.++++++.+|+.+. + +     ++++||+|++...   ...
T Consensus       130 G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~-~-----~~~~FD~V~s~~~~~h~~d  201 (340)
T PLN02244        130 GGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P-F-----EDGQFDLVWSMESGEHMPD  201 (340)
T ss_pred             CHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C-C-----CCCCccEEEECCchhccCC
Confidence            55566666655 7899999999999999999999988877899999999764 2 1     2578999998532   234


Q ss_pred             cHHHHHHHHhcccCCeEEEEecc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ...+++++.+.|+|||.+++.+.
T Consensus       202 ~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        202 KRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEe
Confidence            56789999999999999988543

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.01  E-value=1.9e-09  Score=79.49  Aligned_cols=93  Identities=16%  Similarity=0.224  Sum_probs=74.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~   78 (157)
                      |..+..++...|+.+++++|+++++++.++++++..|+.++++++.+|+.+. + .      .++||+|++..   ....
T Consensus        11 G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I~~~~~l~~~~~   82 (224)
T smart00828       11 GSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLVFGFEVIHHIKD   82 (224)
T ss_pred             CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEeehHHHHHhCCC
Confidence            4445556666788999999999999999999999999988999999998653 1 1      35799999643   1234


Q ss_pred             cHHHHHHHHhcccCCeEEEEeccc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ...+++.+.++|+|||.+++.+..
T Consensus        83 ~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       83 KMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEEcc
Confidence            678999999999999999987653

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.00  E-value=4.8e-09  Score=78.40  Aligned_cols=90  Identities=20%  Similarity=0.298  Sum_probs=71.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      |..+..++...|+.+++++|+++.+++.|+++++..++. +++++.+|+.+.++        .++||+|+++++...   
T Consensus        99 G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~--------~~~fD~Vi~npPy~~~~~  169 (251)
T TIGR03534        99 GAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLP--------GGKFDLIVSNPPYIPEAD  169 (251)
T ss_pred             hHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCc--------CCceeEEEECCCCCchhh
Confidence            444555666778899999999999999999999998885 79999999977432        468999999764210   


Q ss_pred             --------------------------cHHHHHHHHhcccCCeEEEEec
Q 031568           79 --------------------------YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 --------------------------~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                                                +..+++.+.++|+|||.+++..
T Consensus       170 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       170 IHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             hhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence                                      2356778889999999999853

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.00  E-value=2.6e-09  Score=79.99  Aligned_cols=87  Identities=16%  Similarity=0.195  Sum_probs=69.0

Q ss_pred             HHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-HHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568            5 TKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNY   82 (157)
Q Consensus         5 t~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~   82 (157)
                      |..|+. -.|.++|+++|.+++.++.|++|++..|+.+++++.+.|+.+ .++.-     .+..+|.||+|-+.  ..+.
T Consensus        55 t~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~-----~~~~~DavfLDlp~--Pw~~  127 (247)
T PF08704_consen   55 THALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE-----LESDFDAVFLDLPD--PWEA  127 (247)
T ss_dssp             HHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT------TTSEEEEEEESSS--GGGG
T ss_pred             HHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc-----ccCcccEEEEeCCC--HHHH
Confidence            445554 558999999999999999999999999998899999999964 22110     13679999999763  4567


Q ss_pred             HHHHHhcc-cCCeEEEE
Q 031568           83 HERLMKLL-KVGGIAVY   98 (157)
Q Consensus        83 ~~~~~~~L-~~gG~iv~   98 (157)
                      +..+.+.| ++||.+++
T Consensus       128 i~~~~~~L~~~gG~i~~  144 (247)
T PF08704_consen  128 IPHAKRALKKPGGRICC  144 (247)
T ss_dssp             HHHHHHHE-EEEEEEEE
T ss_pred             HHHHHHHHhcCCceEEE
Confidence            88888999 89999987

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.99  E-value=4.3e-09  Score=79.93  Aligned_cols=94  Identities=15%  Similarity=0.186  Sum_probs=72.8

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD   77 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~   77 (157)
                      |..+..++.. .+.++|+++|+++.+++.|+++.+..++. +++++.+|+.+. + +     ++++||+|+.+..   ..
T Consensus        89 G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~-~-----~~~~fD~Vi~~~v~~~~~  160 (272)
T PRK11873         89 GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P-V-----ADNSVDVIISNCVINLSP  160 (272)
T ss_pred             CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-C-C-----CCCceeEEEEcCcccCCC
Confidence            4444444443 36779999999999999999999998875 899999998653 2 1     2468999998753   23


Q ss_pred             ccHHHHHHHHhcccCCeEEEEecccC
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      .....++++.++|+|||.+++.++..
T Consensus       161 d~~~~l~~~~r~LkpGG~l~i~~~~~  186 (272)
T PRK11873        161 DKERVFKEAFRVLKPGGRFAISDVVL  186 (272)
T ss_pred             CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence            45678999999999999999876543

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.99  E-value=5.2e-09  Score=78.83  Aligned_cols=87  Identities=15%  Similarity=0.133  Sum_probs=66.2

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc------
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------   78 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~------   78 (157)
                      ++.++...++.+|+++|+|+.+++.|++|++.++    ++++.+|+.+.++...     .++||+|++|++.-.      
T Consensus       101 ~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~-----~~~fDlVv~NPPy~~~~~~~~  171 (251)
T TIGR03704       101 GAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL-----RGRVDILAANAPYVPTDAIAL  171 (251)
T ss_pred             HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc-----CCCEeEEEECCCCCCchhhhc
Confidence            3445556678899999999999999999998875    3689999987664321     357999999974210      


Q ss_pred             -----------------------cHHHHHHHHhcccCCeEEEEec
Q 031568           79 -----------------------YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 -----------------------~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                                             +..+++.+.++|+|||.+++..
T Consensus       172 ~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~  216 (251)
T TIGR03704       172 MPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET  216 (251)
T ss_pred             CCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                                   2356666778999999999864

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.99  E-value=4.8e-09  Score=76.29  Aligned_cols=88  Identities=25%  Similarity=0.365  Sum_probs=65.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.-++.+|+..+..+|+++|++|.+++..++|++.+++.+++..+++|+.++++        .+.||.|+++.+... .+
T Consensus       113 G~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~~drvim~lp~~~-~~  183 (200)
T PF02475_consen  113 GPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGKFDRVIMNLPESS-LE  183 (200)
T ss_dssp             TTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-EEEEEE--TSSG-GG
T ss_pred             cHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccccCEEEECChHHH-HH
Confidence            444555555557889999999999999999999999999999999999999875        468999999876543 46


Q ss_pred             HHHHHHhcccCCeEEEE
Q 031568           82 YHERLMKLLKVGGIAVY   98 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~   98 (157)
                      +++.+..++++||++.+
T Consensus       184 fl~~~~~~~~~~g~ihy  200 (200)
T PF02475_consen  184 FLDAALSLLKEGGIIHY  200 (200)
T ss_dssp             GHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHhcCCcEEEC
Confidence            88899999999999863

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.95  E-value=6.5e-09  Score=79.76  Aligned_cols=83  Identities=14%  Similarity=0.111  Sum_probs=67.9

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL   90 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L   90 (157)
                      ..+..+|+++|+++.+++.|++|++.+++.+++.+..++....         ..++||+|+.+.....+..++..+.+.|
T Consensus       179 ~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---------~~~~fDlVvan~~~~~l~~ll~~~~~~L  249 (288)
T TIGR00406       179 KLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---------IEGKADVIVANILAEVIKELYPQFSRLV  249 (288)
T ss_pred             HcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---------cCCCceEEEEecCHHHHHHHHHHHHHHc
Confidence            3456799999999999999999999999887888888773221         1468999999876555677888899999


Q ss_pred             cCCeEEEEeccc
Q 031568           91 KVGGIAVYDNTL  102 (157)
Q Consensus        91 ~~gG~iv~~~~~  102 (157)
                      +|||.+++..+.
T Consensus       250 kpgG~li~sgi~  261 (288)
T TIGR00406       250 KPGGWLILSGIL  261 (288)
T ss_pred             CCCcEEEEEeCc
Confidence            999999987653

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.95  E-value=3.8e-09  Score=77.42  Aligned_cols=85  Identities=15%  Similarity=0.166  Sum_probs=67.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..|.+++...  .+++++|+++++++.|++++++.++. +++++.+|+.+.++.       .++||+|++++....+  
T Consensus        90 G~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~~fD~I~~~~~~~~~--  157 (212)
T PRK00312         90 GYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPA-------YAPFDRILVTAAAPEI--  157 (212)
T ss_pred             cHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCc-------CCCcCEEEEccCchhh--
Confidence            66677666543  58999999999999999999999886 699999998654321       3689999999865443  


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                       .+.+.+.|+|||.+++.
T Consensus       158 -~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        158 -PRALLEQLKEGGILVAP  174 (212)
T ss_pred             -hHHHHHhcCCCcEEEEE
Confidence             45677899999999884

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.94  E-value=6.6e-09  Score=79.12  Aligned_cols=85  Identities=21%  Similarity=0.324  Sum_probs=66.2

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCcccHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNY   82 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~~~~   82 (157)
                      ++... +++|++|.++++..+.+++.+++.|+.+++++..+|..+.          .++||.|+.-.     ..+++..+
T Consensus        80 ~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----------~~~fD~IvSi~~~Ehvg~~~~~~~  148 (273)
T PF02353_consen   80 AAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----------PGKFDRIVSIEMFEHVGRKNYPAF  148 (273)
T ss_dssp             HHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------------S-SEEEEESEGGGTCGGGHHHH
T ss_pred             HHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------CCCCCEEEEEechhhcChhHHHHH
Confidence            33344 8999999999999999999999999999999999998764          34899998642     34678999


Q ss_pred             HHHHHhcccCCeEEEEecccC
Q 031568           83 HERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        83 ~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      |+.+.++|+|||.++++.+..
T Consensus       149 f~~~~~~LkpgG~~~lq~i~~  169 (273)
T PF02353_consen  149 FRKISRLLKPGGRLVLQTITH  169 (273)
T ss_dssp             HHHHHHHSETTEEEEEEEEEE
T ss_pred             HHHHHHhcCCCcEEEEEeccc
Confidence            999999999999999876543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.93  E-value=6.3e-08  Score=74.15  Aligned_cols=113  Identities=23%  Similarity=0.259  Sum_probs=84.9

Q ss_pred             HHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-----
Q 031568            5 TKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----   78 (157)
Q Consensus         5 t~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-----   78 (157)
                      |..++... ..+.|++.|+++..+...++|+++.|.. ++.++..|+.+..+...     ...||.|++|++...     
T Consensus       100 t~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~-----~~~fd~VlvDaPCSg~G~i~  173 (283)
T PF01189_consen  100 TTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKP-----ESKFDRVLVDAPCSGLGTIR  173 (283)
T ss_dssp             HHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHH-----TTTEEEEEEECSCCCGGGTT
T ss_pred             eeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccccccc-----ccccchhhcCCCccchhhhh
Confidence            55666644 4899999999999999999999999986 78888899998866543     346999999985431     


Q ss_pred             --------------------cHHHHHHHHhcc----cCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 031568           79 --------------------YCNYHERLMKLL----KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA  134 (157)
Q Consensus        79 --------------------~~~~~~~~~~~L----~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  134 (157)
                                          -.++++.+.+++    +|||.+|+..+...     |+         +....++.|++   
T Consensus       174 r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~-----~e---------ENE~vV~~fl~---  236 (283)
T PF01189_consen  174 RNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS-----PE---------ENEEVVEKFLK---  236 (283)
T ss_dssp             TCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH-----GG---------GTHHHHHHHHH---
T ss_pred             hccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH-----HH---------HHHHHHHHHHH---
Confidence                                135677888999    99999999887542     22         15667888854   


Q ss_pred             cCCCee
Q 031568          135 DDPRVQ  140 (157)
Q Consensus       135 ~~~~~~  140 (157)
                      .+|++.
T Consensus       237 ~~~~~~  242 (283)
T PF01189_consen  237 RHPDFE  242 (283)
T ss_dssp             HSTSEE
T ss_pred             hCCCcE
Confidence            455554

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=98.92  E-value=1.3e-08  Score=75.34  Aligned_cols=76  Identities=17%  Similarity=0.159  Sum_probs=61.2

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---------------
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---------------   77 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---------------   77 (157)
                      +..+++++|+++.+++.+++|++..+.  +++++.+|+.+.++        .++||+|+++++..               
T Consensus        58 ~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~  127 (223)
T PRK14967         58 GAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRPFDVVVSNPPYVPAPPDAPPSRGPARA  127 (223)
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCCeeEEEECCCCCCCCcccccccChhHh
Confidence            446999999999999999999998876  58899999877532        46899999986311               


Q ss_pred             ---------ccHHHHHHHHhcccCCeEEEE
Q 031568           78 ---------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 ---------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                               .+..+++.+.++|++||.+++
T Consensus       128 ~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~  157 (223)
T PRK14967        128 WDAGPDGRAVLDRLCDAAPALLAPGGSLLL  157 (223)
T ss_pred             hhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence                     034467778899999999986

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.92  E-value=2.1e-08  Score=77.92  Aligned_cols=79  Identities=11%  Similarity=0.101  Sum_probs=62.4

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV   92 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~   92 (157)
                      ++.+|+++|+++.+++.|++|++.+++ ++++++.+|+.++....      .++||+|++|++.......+......++|
T Consensus       194 ~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~  266 (315)
T PRK03522        194 PGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVPDLVLVNPPRRGIGKELCDYLSQMAP  266 (315)
T ss_pred             cCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCCeEEEECCCCCCccHHHHHHHHHcCC
Confidence            568999999999999999999999998 48999999998876532      35799999999876544434344455677


Q ss_pred             CeEEEE
Q 031568           93 GGIAVY   98 (157)
Q Consensus        93 gG~iv~   98 (157)
                      ++++.+
T Consensus       267 ~~ivyv  272 (315)
T PRK03522        267 RFILYS  272 (315)
T ss_pred             CeEEEE
Confidence            776665

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.92  E-value=2e-08  Score=79.76  Aligned_cols=90  Identities=11%  Similarity=0.093  Sum_probs=68.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc-H
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY-C   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~-~   80 (157)
                      |..+..+..+.++.+|+++|+++.+++.|++|++.++++ +++++.+|+.++++..      .++||+|++|++.... .
T Consensus       243 G~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D~vi~DPPr~G~~~  315 (374)
T TIGR02085       243 GVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQ------MSAPELVLVNPPRRGIGK  315 (374)
T ss_pred             CccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhc------CCCCCEEEECCCCCCCcH
Confidence            444444444445789999999999999999999999985 8999999998887542      3469999999986653 3


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++.+. .++|++++.+.
T Consensus       316 ~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       316 ELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             HHHHHHH-hcCCCeEEEEE
Confidence            4445554 57888887764

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.92  E-value=8.3e-09  Score=78.12  Aligned_cols=93  Identities=13%  Similarity=0.124  Sum_probs=68.9

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHH--cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKK--AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---   75 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~--~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---   75 (157)
                      |..+..++.. .+.++|+++|++++|++.|+++...  .+..++++++++|+.+. + +     ++++||+|++...   
T Consensus        85 G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~-----~~~sfD~V~~~~~l~~  157 (261)
T PLN02233         85 GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-F-----DDCYFDAITMGYGLRN  157 (261)
T ss_pred             CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-C-----CCCCEeEEEEeccccc
Confidence            5445555554 3678999999999999999887542  22335799999998764 3 2     2568999998642   


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEecc
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .++....++++.+.|+|||.+++-+.
T Consensus       158 ~~d~~~~l~ei~rvLkpGG~l~i~d~  183 (261)
T PLN02233        158 VVDRLKAMQEMYRVLKPGSRVSILDF  183 (261)
T ss_pred             CCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            23557789999999999999987554

>TIGR00740 methyltransferase, putative

Probab=98.92  E-value=1.8e-08  Score=75.18  Aligned_cols=92  Identities=11%  Similarity=0.070  Sum_probs=70.6

Q ss_pred             cccHHHHHhh--CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---
Q 031568            2 HLPTKLFMTG--NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---   76 (157)
Q Consensus         2 g~st~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---   76 (157)
                      |..+..++..  .|+.+++++|+++++++.|++++...+...+++++++|+.+..         .+.+|+|++....   
T Consensus        65 G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~d~v~~~~~l~~~  135 (239)
T TIGR00740        65 GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKNASMVILNFTLQFL  135 (239)
T ss_pred             CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCCCCEEeeecchhhC
Confidence            4444445554  3789999999999999999999988776668999999997641         2458988775421   


Q ss_pred             --cccHHHHHHHHhcccCCeEEEEeccc
Q 031568           77 --DNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        77 --~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                        .....+++.+.+.|+|||.+++.+..
T Consensus       136 ~~~~~~~~l~~i~~~LkpgG~l~i~d~~  163 (239)
T TIGR00740       136 PPEDRIALLTKIYEGLNPNGVLVLSEKF  163 (239)
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence              12356889999999999999987643

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.90  E-value=7.1e-09  Score=67.24  Aligned_cols=84  Identities=19%  Similarity=0.341  Sum_probs=63.0

Q ss_pred             cccHHHHHhhC---CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---
Q 031568            2 HLPTKLFMTGN---KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---   75 (157)
Q Consensus         2 g~st~~l~~~~---~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---   75 (157)
                      |-.|..++...   |..+++++|+++++++.++++....+.  +++++++|+.++ +..      .++||+|++-..   
T Consensus         9 G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~~~D~v~~~~~~~~   79 (101)
T PF13649_consen    9 GRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DGKFDLVVCSGLSLH   79 (101)
T ss_dssp             SHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SSSEEEEEE-TTGGG
T ss_pred             cHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CCCeeEEEEcCCccC
Confidence            44455555543   458999999999999999999988666  799999999885 433      579999999322   


Q ss_pred             ---CcccHHHHHHHHhcccCCe
Q 031568           76 ---KDNYCNYHERLMKLLKVGG   94 (157)
Q Consensus        76 ---~~~~~~~~~~~~~~L~~gG   94 (157)
                         .+....+++.+.++|+|||
T Consensus        80 ~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   80 HLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCC
Confidence               2235678899999999998

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.90  E-value=1.9e-08  Score=78.30  Aligned_cols=91  Identities=15%  Similarity=0.142  Sum_probs=70.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |.-+..++.  .+.+|++||.++++++.|+++.+..+...+++++++|+.+. +.      ..++||+|++-..   ...
T Consensus       143 G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~------~~~~FD~Vi~~~vLeHv~d  213 (322)
T PLN02396        143 GLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-AD------EGRKFDAVLSLEVIEHVAN  213 (322)
T ss_pred             CHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-hh------ccCCCCEEEEhhHHHhcCC
Confidence            443444443  57899999999999999999887766656899999999765 22      1568999997542   234


Q ss_pred             cHHHHHHHHhcccCCeEEEEecc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ...+++.+.++|+|||.+++..+
T Consensus       214 ~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        214 PAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEC
Confidence            57889999999999999998754

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.90  E-value=8.7e-09  Score=77.61  Aligned_cols=84  Identities=21%  Similarity=0.274  Sum_probs=68.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~   78 (157)
                      |..|..++...|+.+|+++|+++.+++.|++++      ++++++.+|+.++.+        .++||+|++....   ..
T Consensus        43 G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~~fD~v~~~~~l~~~~d  108 (258)
T PRK01683         43 GNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQALDLIFANASLQWLPD  108 (258)
T ss_pred             CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CCCccEEEEccChhhCCC
Confidence            556777777778999999999999999999864      368899999976532        4589999987642   34


Q ss_pred             cHHHHHHHHhcccCCeEEEEe
Q 031568           79 YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ...+++.+.+.|+|||.+++.
T Consensus       109 ~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683        109 HLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             HHHHHHHHHHhcCCCcEEEEE
Confidence            567899999999999999884

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.89  E-value=8.7e-09  Score=80.44  Aligned_cols=90  Identities=17%  Similarity=0.139  Sum_probs=71.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |-.+..+.++..+.+++++|+++.+++.|++|++..|+.+ ++++.+|+.+. +.      ..++||.|++|++..    
T Consensus       192 GtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l-~~------~~~~~D~Iv~dPPyg~~~~  263 (329)
T TIGR01177       192 GTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL-PL------SSESVDAIATDPPYGRSTT  263 (329)
T ss_pred             CCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC-Cc------ccCCCCEEEECCCCcCccc
Confidence            4445555555568899999999999999999999999875 89999999864 31      146899999997421    


Q ss_pred             --------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 --------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 --------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                              .+.++++.+.+.|+|||.+++-
T Consensus       264 ~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       264 AAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             ccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence                    1567888889999999999874

This family is found exclusively in the Archaea.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=1.6e-08  Score=77.28  Aligned_cols=88  Identities=15%  Similarity=0.289  Sum_probs=68.9

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---c---
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---D---   77 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~---   77 (157)
                      -++.++..+|..+|+++|+|+.+++.|++|++.+|+ .++.++.+|..+.+         .++||+|+++++.   +   
T Consensus       124 iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~---------~~~fDlIVsNPPYip~~~~~  193 (280)
T COG2890         124 IAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL---------RGKFDLIVSNPPYIPAEDPE  193 (280)
T ss_pred             HHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccccc---------CCceeEEEeCCCCCCCcccc
Confidence            344566677899999999999999999999999998 57878887776654         3589999998731   1   


Q ss_pred             ----------------------ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 ----------------------NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 ----------------------~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                                            .+..++..+...|+|||+++++--
T Consensus       194 ~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g  239 (280)
T COG2890         194 LLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG  239 (280)
T ss_pred             cChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence                                  134556667789999999998643

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.88  E-value=1e-08  Score=77.26  Aligned_cols=82  Identities=12%  Similarity=0.009  Sum_probs=65.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++...|+.+|+++|+++.+++.|++.        +++++.+|+.+..+        .++||+|++...   .+.
T Consensus        41 G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--------~~~fD~v~~~~~l~~~~d  104 (255)
T PRK14103         41 GNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP--------KPDTDVVVSNAALQWVPE  104 (255)
T ss_pred             CHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC--------CCCceEEEEehhhhhCCC
Confidence            55556677777889999999999999999762        47889999976521        468999999753   234


Q ss_pred             cHHHHHHHHhcccCCeEEEEe
Q 031568           79 YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ....++.+.+.|+|||.+++.
T Consensus       105 ~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103        105 HADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             HHHHHHHHHHhCCCCcEEEEE
Confidence            577889999999999999884

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.87  E-value=1.9e-08  Score=71.85  Aligned_cols=86  Identities=16%  Similarity=0.115  Sum_probs=64.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++..  +.+|+++|+++++++.+++|++.++.  +++++.+|+.+..         .++||+|+++++..    
T Consensus        31 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---------~~~fD~Vi~n~p~~~~~~   97 (179)
T TIGR00537        31 GLVAIRLKGK--GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---------RGKFDVILFNPPYLPLED   97 (179)
T ss_pred             hHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc---------CCcccEEEECCCCCCCcc
Confidence            3333344443  33999999999999999999998876  5899999987642         35899999986421    


Q ss_pred             --------------------ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 --------------------NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 --------------------~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                                          .+..+++.+.++|+|||.+++-.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence                                03457888889999999988743

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.87  E-value=2.1e-08  Score=77.94  Aligned_cols=87  Identities=16%  Similarity=0.264  Sum_probs=68.7

Q ss_pred             cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..|+.++...+ .++|+++|+++++++.|+++++..|.+ ++.++.+|+.+..+.       .++||+|+++.....  
T Consensus        92 G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~-------~~~fD~Ii~~~g~~~--  161 (322)
T PRK13943         92 GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPE-------FAPYDVIFVTVGVDE--  161 (322)
T ss_pred             cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccc-------cCCccEEEECCchHH--
Confidence            666777776554 468999999999999999999999884 799999998776442       357999999876443  


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                       ..+.+.+.|+|||.+++.
T Consensus       162 -ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        162 -VPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             -hHHHHHHhcCCCCEEEEE
Confidence             334567899999998873

>PRK14968 putative methyltransferase; Provisional

Probab=98.87  E-value=2.2e-08  Score=71.55  Aligned_cols=88  Identities=14%  Similarity=0.164  Sum_probs=66.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCc-EEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---   77 (157)
                      |..+..++..  +.+++++|+++++++.+++++...+..++ +.++.+|+.+.+.        .++||+|+.+++..   
T Consensus        35 G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~d~vi~n~p~~~~~  104 (188)
T PRK14968         35 GIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--------GDKFDVILFNPPYLPTE  104 (188)
T ss_pred             CHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--------ccCceEEEECCCcCCCC
Confidence            4444445444  78999999999999999999998887644 8999999876432        34799999875311   


Q ss_pred             ---------------------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 ---------------------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 ---------------------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                                           .+..+++.+.+.|+|||.+++-
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~  147 (188)
T PRK14968        105 EEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL  147 (188)
T ss_pred             chhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                                 1345688888999999988763

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.85  E-value=2e-08  Score=80.19  Aligned_cols=88  Identities=13%  Similarity=0.118  Sum_probs=66.2

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------   77 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------   77 (157)
                      +..++...|+.+|+++|+|+++++.|++|++..+.  +++++++|+.+....      ..++||+|+++++.-       
T Consensus       266 aiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~------~~~~FDLIVSNPPYI~~~e~~l  337 (423)
T PRK14966        266 AVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMP------SEGKWDIIVSNPPYIENGDKHL  337 (423)
T ss_pred             HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccc------cCCCccEEEECCCCCCcchhhh
Confidence            33455567899999999999999999999998874  799999998764210      135799999987420       


Q ss_pred             ---------------------ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 ---------------------NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 ---------------------~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                                           .|..+++.+.++|+|||.++++-
T Consensus       338 ~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi  381 (423)
T PRK14966        338 LQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH  381 (423)
T ss_pred             cchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                                 12345556667999999998753

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.85  E-value=1.7e-08  Score=73.32  Aligned_cols=86  Identities=13%  Similarity=0.142  Sum_probs=65.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..|+..  +.+|+++|+++.+++.++++++..++. +++++.+|+.+.-  +      .++||+|++....     
T Consensus        42 G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~--~------~~~fD~I~~~~~~~~~~~  110 (197)
T PRK11207         42 GRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT--F------DGEYDFILSTVVLMFLEA  110 (197)
T ss_pred             CHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC--c------CCCcCEEEEecchhhCCH
Confidence            4445555543  679999999999999999999988874 6899999986541  1      4579999975421     


Q ss_pred             cccHHHHHHHHhcccCCeEEEE
Q 031568           77 DNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      .....+++.+.++|+|||.+++
T Consensus       111 ~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        111 KTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             HHHHHHHHHHHHHcCCCcEEEE
Confidence            2346788999999999998654

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.84  E-value=2.5e-08  Score=78.21  Aligned_cols=86  Identities=15%  Similarity=0.209  Sum_probs=68.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |.-+..++...|+.+|+++|+++.+++.|++|++.+++.  .+++.+|..+.+         .++||+|+++++..    
T Consensus       208 G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~---------~~~fDlIvsNPPFH~g~~  276 (342)
T PRK09489        208 GVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDI---------KGRFDMIISNPPFHDGIQ  276 (342)
T ss_pred             CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccccc---------CCCccEEEECCCccCCcc
Confidence            444556666778899999999999999999999998874  567888876532         46799999987532    


Q ss_pred             ----ccHHHHHHHHhcccCCeEEEE
Q 031568           78 ----NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 ----~~~~~~~~~~~~L~~gG~iv~   98 (157)
                          ....++..+.++|+|||.+++
T Consensus       277 ~~~~~~~~~i~~a~~~LkpgG~L~i  301 (342)
T PRK09489        277 TSLDAAQTLIRGAVRHLNSGGELRI  301 (342)
T ss_pred             ccHHHHHHHHHHHHHhcCcCCEEEE
Confidence                235678888999999999865

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.84  E-value=2.8e-08  Score=75.37  Aligned_cols=89  Identities=19%  Similarity=0.287  Sum_probs=67.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++...|..+++++|+++.+++.|++|++ .+...+++++.+|+.+.++        .++||+|+++++..    
T Consensus       120 G~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~--------~~~fD~Iv~npPy~~~~~  190 (275)
T PRK09328        120 GAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLP--------GGRFDLIVSNPPYIPEAD  190 (275)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCC--------CCceeEEEECCCcCCcch
Confidence            3344556666788999999999999999999998 3344589999999855321        36899999975311    


Q ss_pred             -------------------------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 -------------------------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 -------------------------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                                               .+..+++.+.++|+|||.++++
T Consensus       191 ~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        191 IHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             hhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence                                     1345666777999999999985

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.83  E-value=7.2e-08  Score=77.88  Aligned_cols=90  Identities=16%  Similarity=0.132  Sum_probs=68.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-cH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-YC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-~~   80 (157)
                      |..++.++.  ...+|+++|+++++++.|++|++.+++. +++++.+|+.+.++.+..   ..++||+|++|++... ..
T Consensus       304 G~~sl~la~--~~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~---~~~~~D~vi~dPPr~G~~~  377 (431)
T TIGR00479       304 GTFTLPLAK--QAKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPW---AGQIPDVLLLDPPRKGCAA  377 (431)
T ss_pred             CHHHHHHHH--hCCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHh---cCCCCCEEEECcCCCCCCH
Confidence            333444443  3568999999999999999999999985 899999999987765421   1357999999998655 56


Q ss_pred             HHHHHHHhcccCCeEEEE
Q 031568           81 NYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~   98 (157)
                      .+++.+. .++|++++.+
T Consensus       378 ~~l~~l~-~l~~~~ivyv  394 (431)
T TIGR00479       378 EVLRTII-ELKPERIVYV  394 (431)
T ss_pred             HHHHHHH-hcCCCEEEEE
Confidence            6666654 4888887655

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.81  E-value=3.8e-08  Score=74.74  Aligned_cols=89  Identities=16%  Similarity=0.279  Sum_probs=75.0

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCccc
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNY   79 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~   79 (157)
                      +++.|+..=+.+|+++++|++..+.+++.++..|++++++++..|..+.          .++||.|+.-.     .+.++
T Consensus        86 l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~----------~e~fDrIvSvgmfEhvg~~~~  155 (283)
T COG2230          86 LAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF----------EEPFDRIVSVGMFEHVGKENY  155 (283)
T ss_pred             HHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc----------ccccceeeehhhHHHhCcccH
Confidence            3444443239999999999999999999999999998999999999875          45699999743     45679


Q ss_pred             HHHHHHHHhcccCCeEEEEecccC
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      +.+|+.+.+.|+|||.++...+..
T Consensus       156 ~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         156 DDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             HHHHHHHHhhcCCCceEEEEEecC
Confidence            999999999999999999877654

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.81  E-value=3.2e-08  Score=76.45  Aligned_cols=92  Identities=9%  Similarity=0.028  Sum_probs=71.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~   76 (157)
                      |.-+..+++++|+.+++++|. |.+++.+++++++.|+.++++++.+|+.+.  .       .+.+|+|++...     .
T Consensus       161 G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~-------~~~~D~v~~~~~lh~~~~  230 (306)
T TIGR02716       161 GDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--S-------YPEADAVLFCRILYSANE  230 (306)
T ss_pred             hHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--C-------CCCCCEEEeEhhhhcCCh
Confidence            444455677889999999998 899999999999999988999999998753  1       234799886542     1


Q ss_pred             cccHHHHHHHHhcccCCeEEEEecccC
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      .....+++.+.+.|+|||.+++.+..+
T Consensus       231 ~~~~~il~~~~~~L~pgG~l~i~d~~~  257 (306)
T TIGR02716       231 QLSTIMCKKAFDAMRSGGRLLILDMVI  257 (306)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence            223468999999999999998876654

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.80  E-value=1e-07  Score=70.63  Aligned_cols=94  Identities=21%  Similarity=0.305  Sum_probs=79.9

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEE---cCCCc
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV---DADKD   77 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~i---D~~~~   77 (157)
                      ||-+++-+|..+|...+++||+....+..|.+.+.+.++. ++.++++||.+.+..+.    ++++.|-|++   |++..
T Consensus        59 ~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~----~~~sl~~I~i~FPDPWpK  133 (227)
T COG0220          59 MGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLI----PDGSLDKIYINFPDPWPK  133 (227)
T ss_pred             CCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcC----CCCCeeEEEEECCCCCCC
Confidence            4666777888999999999999999999999999999996 89999999999999875    2458999987   44321


Q ss_pred             --------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 --------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 --------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                              -++.+++.+.+.|+|||.|.+.
T Consensus       134 kRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         134 KRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             ccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence                    2578899999999999999873

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.80  E-value=7e-08  Score=76.74  Aligned_cols=122  Identities=16%  Similarity=0.173  Sum_probs=84.0

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE   84 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~   84 (157)
                      ++.++...+..+|+++|+++.+++.+++|++.+++. +++++.+|+.+.+..       .++||+|++|+. .....+++
T Consensus        72 ~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~~fD~V~lDP~-Gs~~~~l~  142 (382)
T PRK04338         72 GIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ERKFDVVDIDPF-GSPAPFLD  142 (382)
T ss_pred             HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cCCCCEEEECCC-CCcHHHHH
Confidence            344455545569999999999999999999999986 678999999887652       246999999985 33467788


Q ss_pred             HHHhcccCCeEEEEe---cccCCcccc----CCCCCCCCCcccchHHHHHHHHHHhhc
Q 031568           85 RLMKLLKVGGIAVYD---NTLWGGTVA----VPEEQVPDHFRGSSRQAILDLNRSLAD  135 (157)
Q Consensus        85 ~~~~~L~~gG~iv~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~  135 (157)
                      .+...+++||++.+.   ...+.|...    .+.+..|.+..-.+.-.+|-++..+..
T Consensus       143 ~al~~~~~~gilyvSAtD~~~L~g~y~~~~~~~yd~fP~~~~~~~E~glRill~~i~r  200 (382)
T PRK04338        143 SAIRSVKRGGLLCVTATDTAPLCGAYPKSCLRKYGAVPLKTEFYHEMGLRILIGYIAR  200 (382)
T ss_pred             HHHHHhcCCCEEEEEecCchhhcCCChHHHHHHhcCcccCCcchhHHHHHHHHHHHHH
Confidence            888889999999873   222323210    112223433322245567777766554

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.80  E-value=1.1e-09  Score=70.75  Aligned_cols=89  Identities=18%  Similarity=0.221  Sum_probs=54.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |.-+..++..+|..+++++|+++.+++.|++.+...+.. +......+..+.....     ..++||+|++-..   .+.
T Consensus         8 G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~fD~V~~~~vl~~l~~   81 (99)
T PF08242_consen    8 GRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYD-----PPESFDLVVASNVLHHLED   81 (99)
T ss_dssp             S-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE-TTS--S-
T ss_pred             hHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcc-----cccccceehhhhhHhhhhh
Confidence            445556777779999999999999999999999887653 3344444433333211     1258999997642   245


Q ss_pred             cHHHHHHHHhcccCCeEE
Q 031568           79 YCNYHERLMKLLKVGGIA   96 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~i   96 (157)
                      ...+++.+.++|+|||+|
T Consensus        82 ~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   82 IEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             HHHHHHHHTTT-TSS-EE
T ss_pred             HHHHHHHHHHHcCCCCCC
Confidence            678899999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK04266 fibrillarin; Provisional

Probab=98.79  E-value=4.7e-08  Score=72.54  Aligned_cols=91  Identities=13%  Similarity=-0.004  Sum_probs=66.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-cH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-YC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-~~   80 (157)
                      |..|..++...+.++|+++|+++++++.++++++..   .++.++.+|+.+......    ..++||+||.|...+. ..
T Consensus        84 G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~----l~~~~D~i~~d~~~p~~~~  156 (226)
T PRK04266         84 GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAH----VVEKVDVIYQDVAQPNQAE  156 (226)
T ss_pred             CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhh----ccccCCEEEECCCChhHHH
Confidence            666777777666789999999999999888877653   478999999865211110    1356999999865322 23


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++.+.+.|+|||.+++.
T Consensus       157 ~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        157 IAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             HHHHHHHHhcCCCcEEEEE
Confidence            3578889999999999984

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.79  E-value=4.2e-08  Score=71.17  Aligned_cols=85  Identities=11%  Similarity=0.107  Sum_probs=63.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~   76 (157)
                      |..+.+++..  +.+|+++|+++.+++.++++++..++.  +++..+|+... + +      .++||+|++...     .
T Consensus        42 G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~------~~~fD~I~~~~~~~~~~~  109 (195)
T TIGR00477        42 GRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-L------NEDYDFIFSTVVFMFLQA  109 (195)
T ss_pred             CHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-c------cCCCCEEEEecccccCCH
Confidence            5555556553  679999999999999999999888773  77777887542 1 2      357999987532     1


Q ss_pred             cccHHHHHHHHhcccCCeEEEE
Q 031568           77 DNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      .....+++.+.++|+|||.+++
T Consensus       110 ~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477       110 GRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEE
Confidence            2346789999999999998554

Part of a tellurite-reducing operon tehA and tehB

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.78  E-value=9e-08  Score=75.87  Aligned_cols=114  Identities=14%  Similarity=0.113  Sum_probs=81.8

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccCC
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG   93 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~g   93 (157)
                      ..+|+++|++|++++.+++|++.++.. +++++++|+...+...      ..+||+|++|+. ....++++.+.+.+++|
T Consensus        69 a~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDvIdlDPf-Gs~~~fld~al~~~~~~  140 (374)
T TIGR00308        69 VREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHVIDIDPF-GTPAPFVDSAIQASAER  140 (374)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCEEEeCCC-CCcHHHHHHHHHhcccC
Confidence            468999999999999999999999875 7999999999998754      457999999994 34457899999999999


Q ss_pred             eEEEEe---cccCCccccCC----CCCCCCCcccchHHHHHHHHHHhhc
Q 031568           94 GIAVYD---NTLWGGTVAVP----EEQVPDHFRGSSRQAILDLNRSLAD  135 (157)
Q Consensus        94 G~iv~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~  135 (157)
                      |++.+-   ...+.|.....    ....|.+..-.+.-.+|-++..+..
T Consensus       141 glL~vTaTD~~~L~G~~~~~~~rkYga~~~~~~~~~E~glRiLlg~i~r  189 (374)
T TIGR00308       141 GLLLVTATDTSALCGNYPKSCLRKYGANPVKTESCHESALRLLLGFVKR  189 (374)
T ss_pred             CEEEEEecccHHhcCCChHHHHHHhCCcccCCcchHHHHHHHHHHHHHH
Confidence            998773   44444432110    0111222221244567777766654

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.77  E-value=2.6e-08  Score=70.05  Aligned_cols=69  Identities=25%  Similarity=0.303  Sum_probs=49.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      |-.|..+|..  ..+|++||+||..++.|+.|++-.|+.++|++++||+.+.++.+..    ...||.||++++.
T Consensus        11 GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~vFlSPPW   79 (163)
T PF09445_consen   11 GGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVVFLSPPW   79 (163)
T ss_dssp             SHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEEEE---B
T ss_pred             CHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEEEECCCC
Confidence            4456667765  5789999999999999999999999999999999999998776531    1228999999854

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.76  E-value=8.9e-09  Score=75.66  Aligned_cols=93  Identities=17%  Similarity=0.179  Sum_probs=70.5

Q ss_pred             Cccc-HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568            1 MHLP-TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-   77 (157)
Q Consensus         1 ~g~s-t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-   77 (157)
                      |||. |++-|......+|+++|.||..+++|.-|=..-++. .+|+++.||+.+.++.+.     +++||.|+-|++.- 
T Consensus       143 ~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-----D~sfDaIiHDPPRfS  217 (287)
T COG2521         143 TGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-----DESFDAIIHDPPRFS  217 (287)
T ss_pred             cCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC-----ccccceEeeCCCccc
Confidence            4554 333444544459999999999999998765444442 358999999999999884     67899999998632 


Q ss_pred             -----ccHHHHHHHHhcccCCeEEEE
Q 031568           78 -----NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 -----~~~~~~~~~~~~L~~gG~iv~   98 (157)
                           .-.++++++.+.|+|||.+.-
T Consensus       218 ~AgeLYseefY~El~RiLkrgGrlFH  243 (287)
T COG2521         218 LAGELYSEEFYRELYRILKRGGRLFH  243 (287)
T ss_pred             hhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence                 135788999999999999864

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.76  E-value=3.5e-07  Score=68.81  Aligned_cols=77  Identities=17%  Similarity=0.215  Sum_probs=60.3

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL   90 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L   90 (157)
                      .....+|+++|+++.+++.|++|++.+++.+++.+..++               .+||+|+.+.....+..+++.+.+.|
T Consensus       139 ~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~---------------~~fD~Vvani~~~~~~~l~~~~~~~L  203 (250)
T PRK00517        139 KLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD---------------LKADVIVANILANPLLELAPDLARLL  203 (250)
T ss_pred             HcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC---------------CCcCEEEEcCcHHHHHHHHHHHHHhc
Confidence            334457999999999999999999998885555543321               26999998876555667888899999


Q ss_pred             cCCeEEEEeccc
Q 031568           91 KVGGIAVYDNTL  102 (157)
Q Consensus        91 ~~gG~iv~~~~~  102 (157)
                      +|||.+++..+.
T Consensus       204 kpgG~lilsgi~  215 (250)
T PRK00517        204 KPGGRLILSGIL  215 (250)
T ss_pred             CCCcEEEEEECc
Confidence            999999987543

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.75  E-value=1.4e-07  Score=76.54  Aligned_cols=91  Identities=14%  Similarity=0.142  Sum_probs=68.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.-++.++..  ..+|+++|+++++++.|++|++.+++. +++++.+|+.+.+.....   ..++||+|++|++.....+
T Consensus       309 G~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~~---~~~~fD~Vi~dPPr~g~~~  382 (443)
T PRK13168        309 GNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQPW---ALGGFDKVLLDPPRAGAAE  382 (443)
T ss_pred             CHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhhh---hcCCCCEEEECcCCcChHH
Confidence            4334444443  479999999999999999999999885 799999999887643210   1357999999998776666


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+ ++|++++.+.
T Consensus       383 ~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        383 VMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             HHHHHHh-cCCCeEEEEE
Confidence            7765554 6888877664

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.74  E-value=7.2e-08  Score=71.24  Aligned_cols=82  Identities=20%  Similarity=0.251  Sum_probs=67.8

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccHHHHHHHHhc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKL   89 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~~~~~~~~~~   89 (157)
                      -+++|+++|+++++++.|+.+..+.|+.  +++....+.+....       .++||.|.+--   ..++...++..|.++
T Consensus        80 ~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-------~~~FDvV~cmEVlEHv~dp~~~~~~c~~l  150 (243)
T COG2227          80 LGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-------GGQFDVVTCMEVLEHVPDPESFLRACAKL  150 (243)
T ss_pred             CCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-------CCCccEEEEhhHHHccCCHHHHHHHHHHH
Confidence            4799999999999999999999999884  88888888876542       47999999753   233556789999999


Q ss_pred             ccCCeEEEEecccC
Q 031568           90 LKVGGIAVYDNTLW  103 (157)
Q Consensus        90 L~~gG~iv~~~~~~  103 (157)
                      +||||.++..++..
T Consensus       151 vkP~G~lf~STinr  164 (243)
T COG2227         151 VKPGGILFLSTINR  164 (243)
T ss_pred             cCCCcEEEEecccc
Confidence            99999999987653

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=4.3e-07  Score=69.59  Aligned_cols=87  Identities=17%  Similarity=0.240  Sum_probs=66.0

Q ss_pred             HHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568            8 FMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL   86 (157)
Q Consensus         8 l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~   86 (157)
                      +|+ .....+++++|+||.+++.|++|++.+++...++.-..+..+...        .++||+|+.+--.+-...+...+
T Consensus       178 IAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~--------~~~~DvIVANILA~vl~~La~~~  249 (300)
T COG2264         178 IAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE--------NGPFDVIVANILAEVLVELAPDI  249 (300)
T ss_pred             HHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc--------cCcccEEEehhhHHHHHHHHHHH
Confidence            444 556778999999999999999999999997544444444444321        46899999876444455667778


Q ss_pred             HhcccCCeEEEEeccc
Q 031568           87 MKLLKVGGIAVYDNTL  102 (157)
Q Consensus        87 ~~~L~~gG~iv~~~~~  102 (157)
                      .++++|||.++...++
T Consensus       250 ~~~lkpgg~lIlSGIl  265 (300)
T COG2264         250 KRLLKPGGRLILSGIL  265 (300)
T ss_pred             HHHcCCCceEEEEeeh
Confidence            8999999999998765

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.72  E-value=1.1e-07  Score=74.09  Aligned_cols=81  Identities=26%  Similarity=0.297  Sum_probs=69.8

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccCC
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG   93 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~g   93 (157)
                      ..+|+++|+||.+++..++|++.+++..+++.++||+.+..+.+       +.+|.|++..... ..+++..+.+.+++|
T Consensus       211 ~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~~aDrIim~~p~~-a~~fl~~A~~~~k~~  282 (341)
T COG2520         211 RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-------GVADRIIMGLPKS-AHEFLPLALELLKDG  282 (341)
T ss_pred             CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-------ccCCEEEeCCCCc-chhhHHHHHHHhhcC
Confidence            44499999999999999999999999988999999999998742       6799999987653 366888999999999


Q ss_pred             eEEEEeccc
Q 031568           94 GIAVYDNTL  102 (157)
Q Consensus        94 G~iv~~~~~  102 (157)
                      |+|.+-...
T Consensus       283 g~iHyy~~~  291 (341)
T COG2520         283 GIIHYYEFV  291 (341)
T ss_pred             cEEEEEecc
Confidence            999986543

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.71  E-value=1.9e-07  Score=67.86  Aligned_cols=92  Identities=20%  Similarity=0.310  Sum_probs=74.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc---CCCc-
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD---ADKD-   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD---~~~~-   77 (157)
                      |-.+..+|..+|+..++++|+....+..+.+.+.+.++. ++.++.+|+...+..+.    +++++|.|++.   ++.. 
T Consensus        29 G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~----~~~~v~~i~i~FPDPWpK~  103 (195)
T PF02390_consen   29 GEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLF----PPGSVDRIYINFPDPWPKK  103 (195)
T ss_dssp             SHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHS----TTTSEEEEEEES-----SG
T ss_pred             CHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcc----cCCchheEEEeCCCCCccc
Confidence            555667888999999999999999999999999999985 89999999999888774    25789999985   3211 


Q ss_pred             -------ccHHHHHHHHhcccCCeEEEE
Q 031568           78 -------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 -------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                             -..++++.+.+.|+|||.|.+
T Consensus       104 rH~krRl~~~~fl~~~~~~L~~gG~l~~  131 (195)
T PF02390_consen  104 RHHKRRLVNPEFLELLARVLKPGGELYF  131 (195)
T ss_dssp             GGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred             chhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence                   246789999999999999876

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK06922 hypothetical protein; Provisional

Probab=98.71  E-value=1.3e-07  Score=79.12  Aligned_cols=93  Identities=14%  Similarity=0.171  Sum_probs=69.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------   75 (157)
                      |..+..++...|+++++++|+++.+++.|+++....+  .+++++.+|+.+.-..+     ++++||+|++...      
T Consensus       430 G~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f-----edeSFDvVVsn~vLH~L~s  502 (677)
T PRK06922        430 GVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF-----EKESVDTIVYSSILHELFS  502 (677)
T ss_pred             CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc-----CCCCEEEEEEchHHHhhhh
Confidence            4444556667799999999999999999999886655  36889999998742112     2568999987531      


Q ss_pred             ----------CcccHHHHHHHHhcccCCeEEEEecc
Q 031568           76 ----------KDNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        76 ----------~~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                                ......+++.+.+.|+|||.+++.+.
T Consensus       503 yIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        503 YIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             hcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence                      12345778889999999999998543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.71  E-value=8.6e-08  Score=70.87  Aligned_cols=92  Identities=14%  Similarity=0.229  Sum_probs=71.6

Q ss_pred             cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 031568            2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD   77 (157)
Q Consensus         2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~   77 (157)
                      |..+..++...+ ..+++++|+++.+++.+++++...+...+++++.+|+.+..  .     ..++||+|++...   ..
T Consensus        63 G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~-----~~~~~D~I~~~~~l~~~~  135 (239)
T PRK00216         63 GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F-----PDNSFDAVTIAFGLRNVP  135 (239)
T ss_pred             CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C-----CCCCccEEEEecccccCC
Confidence            444555666555 79999999999999999999987766668999999997642  1     1468999997642   33


Q ss_pred             ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      .....++.+.+.|+|||.+++-+
T Consensus       136 ~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        136 DIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             CHHHHHHHHHHhccCCcEEEEEE
Confidence            56778999999999999987643

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.70  E-value=6.7e-08  Score=73.28  Aligned_cols=90  Identities=20%  Similarity=0.227  Sum_probs=67.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc-C----CC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-A----DK   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD-~----~~   76 (157)
                      |..+..++.. .+.+|+++|+++.+++.|+++...   .++++++.+|+.+. + +     ++++||+|++- .    ..
T Consensus        64 G~~a~~la~~-~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~-~-----~~~~FD~V~s~~~l~h~~~  132 (263)
T PTZ00098         64 GGGCKYINEK-YGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-D-F-----PENTFDMIYSRDAILHLSY  132 (263)
T ss_pred             ChhhHHHHhh-cCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-C-C-----CCCCeEEEEEhhhHHhCCH
Confidence            4455556554 367999999999999999997654   35799999998743 1 1     25689999983 2    11


Q ss_pred             cccHHHHHHHHhcccCCeEEEEeccc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      .....+++.+.++|+|||.+++.+..
T Consensus       133 ~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        133 ADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            24567899999999999999986553

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.69  E-value=3.1e-07  Score=72.70  Aligned_cols=82  Identities=15%  Similarity=0.182  Sum_probs=60.2

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCC---------CCCceeEEEEcCCCccc-HHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE---------NEGSFDYAFVDADKDNY-CNY   82 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~---------~~~~fD~I~iD~~~~~~-~~~   82 (157)
                      ...+|++||.++.+++.|++|++.++++ +++++.+|+.++++.+.+...         ...+||+||+|++.... ...
T Consensus       227 ~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~  305 (362)
T PRK05031        227 NFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDET  305 (362)
T ss_pred             hCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHH
Confidence            3569999999999999999999999985 899999999998876421000         01259999999986543 444


Q ss_pred             HHHHHhcccCCeEEEE
Q 031568           83 HERLMKLLKVGGIAVY   98 (157)
Q Consensus        83 ~~~~~~~L~~gG~iv~   98 (157)
                      ++.+.+   +++++.+
T Consensus       306 l~~l~~---~~~ivyv  318 (362)
T PRK05031        306 LKLVQA---YERILYI  318 (362)
T ss_pred             HHHHHc---cCCEEEE
Confidence            454443   5666655

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.69  E-value=2.9e-08  Score=76.23  Aligned_cols=88  Identities=20%  Similarity=0.235  Sum_probs=64.8

Q ss_pred             HHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568            5 TKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH   83 (157)
Q Consensus         5 t~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~   83 (157)
                      .+.+++ +....+|+++|+||.+++.|++|++.+|+.+++.+.  ...+.         ..++||+|+.+-...-...+.
T Consensus       174 ILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---------~~~~~dlvvANI~~~vL~~l~  242 (295)
T PF06325_consen  174 ILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---------VEGKFDLVVANILADVLLELA  242 (295)
T ss_dssp             HHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT---------CCS-EEEEEEES-HHHHHHHH
T ss_pred             HHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc---------ccccCCEEEECCCHHHHHHHH
Confidence            344444 566779999999999999999999999999877664  11111         146899999886544455666


Q ss_pred             HHHHhcccCCeEEEEecccC
Q 031568           84 ERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ..+.++|+|||.++...++.
T Consensus       243 ~~~~~~l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  243 PDIASLLKPGGYLILSGILE  262 (295)
T ss_dssp             HHCHHHEEEEEEEEEEEEEG
T ss_pred             HHHHHhhCCCCEEEEccccH
Confidence            67778999999999987763

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.68  E-value=5.5e-08  Score=70.02  Aligned_cols=86  Identities=16%  Similarity=0.269  Sum_probs=61.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------   75 (157)
                      |.=|..|+..+  .+++++|+++.+++.||+.++..   ++|+++++|..+..+        .++||+|++---      
T Consensus        55 G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P--------~~~FDLIV~SEVlYYL~~  121 (201)
T PF05401_consen   55 GVLTERLAPRC--DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP--------EGRFDLIVLSEVLYYLDD  121 (201)
T ss_dssp             SHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----------SS-EEEEEEES-GGGSSS
T ss_pred             cHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC--------CCCeeEEEEehHhHcCCC
Confidence            44466666653  68999999999999999988643   489999999988754        679999998641      


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEec
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ......+++.+...|+|||.+|+-.
T Consensus       122 ~~~L~~~l~~l~~~L~pgG~LV~g~  146 (201)
T PF05401_consen  122 AEDLRAALDRLVAALAPGGHLVFGH  146 (201)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            1234456778889999999999854

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK08317 hypothetical protein; Provisional

Probab=98.66  E-value=4.7e-07  Score=66.75  Aligned_cols=94  Identities=16%  Similarity=0.232  Sum_probs=69.7

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD   77 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~   77 (157)
                      |..+..++... |.++++++|.++.+++.++++...  ...+++++.+|+.+. + +     ..++||+|++...   ..
T Consensus        31 G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~-~-~-----~~~~~D~v~~~~~~~~~~  101 (241)
T PRK08317         31 GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGL-P-F-----PDGSFDAVRSDRVLQHLE  101 (241)
T ss_pred             CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccC-C-C-----CCCCceEEEEechhhccC
Confidence            44444555555 788999999999999999998432  335799999998653 2 1     2468999998642   23


Q ss_pred             ccHHHHHHHHhcccCCeEEEEecccCC
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDNTLWG  104 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~~~~~  104 (157)
                      .....++.+.+.|+|||.+++....+.
T Consensus       102 ~~~~~l~~~~~~L~~gG~l~~~~~~~~  128 (241)
T PRK08317        102 DPARALAEIARVLRPGGRVVVLDTDWD  128 (241)
T ss_pred             CHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence            567789999999999999998765443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.66  E-value=8.6e-08  Score=67.44  Aligned_cols=77  Identities=14%  Similarity=0.178  Sum_probs=58.8

Q ss_pred             EEEeCChhHHHHHHHHHHHc--CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHhcccC
Q 031568           18 TAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV   92 (157)
Q Consensus        18 ~~ve~~~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~~L~~   92 (157)
                      +++|++++|++.|++..+..  +...+++++++|+.+. +.      ++++||+|++...   ..+....++++.+.|+|
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~------~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp   73 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF------DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP   73 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC------CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence            48999999999998776532  2234799999999764 32      2568999998653   23467789999999999


Q ss_pred             CeEEEEecc
Q 031568           93 GGIAVYDNT  101 (157)
Q Consensus        93 gG~iv~~~~  101 (157)
                      ||.+++-+.
T Consensus        74 GG~l~i~d~   82 (160)
T PLN02232         74 GSRVSILDF   82 (160)
T ss_pred             CeEEEEEEC
Confidence            999987543

>PRK00536 speE spermidine synthase; Provisional

Probab=98.66  E-value=4.8e-07  Score=68.43  Aligned_cols=77  Identities=9%  Similarity=0.127  Sum_probs=58.9

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHc--CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM   87 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~   87 (157)
                      +.|. +|+.||+|++.++.+++++...  ++ ++|++++.     .+.+.     ..++||+|++|..  ..+++++.+.
T Consensus        92 kh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~-----~~~~fDVIIvDs~--~~~~fy~~~~  158 (262)
T PRK00536         92 KYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLDL-----DIKKYDLIICLQE--PDIHKIDGLK  158 (262)
T ss_pred             CcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhhc-----cCCcCCEEEEcCC--CChHHHHHHH
Confidence            4454 9999999999999999976653  23 47899986     12221     1368999999964  2367889999


Q ss_pred             hcccCCeEEEEec
Q 031568           88 KLLKVGGIAVYDN  100 (157)
Q Consensus        88 ~~L~~gG~iv~~~  100 (157)
                      +.|+|||+++...
T Consensus       159 ~~L~~~Gi~v~Qs  171 (262)
T PRK00536        159 RMLKEDGVFISVA  171 (262)
T ss_pred             HhcCCCcEEEECC
Confidence            9999999999853

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.65  E-value=2e-07  Score=76.14  Aligned_cols=91  Identities=14%  Similarity=0.170  Sum_probs=68.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++... +.+|+++|+++++++.|+++..  +...+++++.+|+.+..  +     ++++||+|++...   ...
T Consensus       278 G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~-----~~~~fD~I~s~~~l~h~~d  347 (475)
T PLN02336        278 GGGDFYMAENF-DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--Y-----PDNSFDVIYSRDTILHIQD  347 (475)
T ss_pred             CHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--C-----CCCCEEEEEECCcccccCC
Confidence            33334455443 7899999999999999999875  34457999999987631  1     2468999998642   234


Q ss_pred             cHHHHHHHHhcccCCeEEEEeccc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ...+++.+.+.|+|||.+++.+..
T Consensus       348 ~~~~l~~~~r~LkpgG~l~i~~~~  371 (475)
T PLN02336        348 KPALFRSFFKWLKPGGKVLISDYC  371 (475)
T ss_pred             HHHHHHHHHHHcCCCeEEEEEEec
Confidence            578899999999999999987543

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.64  E-value=1.5e-07  Score=71.49  Aligned_cols=91  Identities=21%  Similarity=0.326  Sum_probs=63.6

Q ss_pred             ccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHH-HcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568            3 LPTKLFMTG-NKILQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---   77 (157)
Q Consensus         3 ~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---   77 (157)
                      +|.+.+++. .+++.|+++|+||++++.+++-++ ..|++.+++++.+|+.+....+       ..||.||+-+-..   
T Consensus       134 lT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~~DvV~lAalVg~~~  206 (276)
T PF03059_consen  134 LTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------KEYDVVFLAALVGMDA  206 (276)
T ss_dssp             HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----------SEEEE-TT-S---
T ss_pred             hHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------ccCCEEEEhhhccccc
Confidence            556666653 468899999999999999999888 6788889999999998754332       4799999987443   


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                       .-.++++.+.+.++||+.+++..
T Consensus       207 e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  207 EPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             -SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             chHHHHHHHHHhhCCCCcEEEEec
Confidence             56789999999999999999964

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=2e-07  Score=71.14  Aligned_cols=84  Identities=19%  Similarity=0.212  Sum_probs=68.9

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc----c-
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----Y-   79 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~----~-   79 (157)
                      -+.+++.+|..+++.+|+|..+++.||+|++.++++. .+++.+|..+-.         .++||+|+++++.+.    . 
T Consensus       173 g~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~~v---------~~kfd~IisNPPfh~G~~v~~  242 (300)
T COG2813         173 GLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYEPV---------EGKFDLIISNPPFHAGKAVVH  242 (300)
T ss_pred             HHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccccc---------cccccEEEeCCCccCCcchhH
Confidence            3557778899999999999999999999999998863 478888887754         348999999986432    2 


Q ss_pred             ---HHHHHHHHhcccCCeEEEE
Q 031568           80 ---CNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        80 ---~~~~~~~~~~L~~gG~iv~   98 (157)
                         .+++..+.+.|++||-|-+
T Consensus       243 ~~~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         243 SLAQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             HHHHHHHHHHHHhhccCCEEEE
Confidence               3678888999999998754

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.63  E-value=2.2e-07  Score=71.21  Aligned_cols=85  Identities=14%  Similarity=0.174  Sum_probs=65.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~   76 (157)
                      |..+..++.  .+.+|+++|+++.+++.++++++..++  ++++..+|+.+..  +      .++||+|++...     .
T Consensus       132 G~~~~~la~--~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~------~~~fD~I~~~~vl~~l~~  199 (287)
T PRK12335        132 GRNSLYLAL--LGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I------QEEYDFILSTVVLMFLNR  199 (287)
T ss_pred             CHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c------cCCccEEEEcchhhhCCH
Confidence            444444554  368999999999999999999998887  6888888886531  1      468999987642     2


Q ss_pred             cccHHHHHHHHhcccCCeEEEE
Q 031568           77 DNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      .....+++.+.+.|+|||++++
T Consensus       200 ~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        200 ERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEE
Confidence            3456789999999999999654

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.62  E-value=2.5e-07  Score=67.73  Aligned_cols=90  Identities=18%  Similarity=0.209  Sum_probs=69.2

Q ss_pred             cccHHHHHhhCCC-cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCc
Q 031568            2 HLPTKLFMTGNKI-LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKD   77 (157)
Q Consensus         2 g~st~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~   77 (157)
                      |..+..++...+. ++++++|+++.+++.+++++.   ...+++++.+|+.+..  .     ..++||+|++..   ...
T Consensus        51 G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~-----~~~~~D~i~~~~~~~~~~  120 (223)
T TIGR01934        51 GDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--F-----EDNSFDAVTIAFGLRNVT  120 (223)
T ss_pred             ChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--C-----CCCcEEEEEEeeeeCCcc
Confidence            5556667766665 799999999999999999876   3357999999998743  1     146799998754   233


Q ss_pred             ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .....++.+.+.|+|||.+++.+.
T Consensus       121 ~~~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       121 DIQKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             cHHHHHHHHHHHcCCCcEEEEEEe
Confidence            467788999999999999987543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.62  E-value=7.4e-07  Score=56.30  Aligned_cols=81  Identities=19%  Similarity=0.306  Sum_probs=63.4

Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----ccHHHHHHHH
Q 031568           12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----NYCNYHERLM   87 (157)
Q Consensus        12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----~~~~~~~~~~   87 (157)
                      .+..+++++|.++..+..+++.....+ ..+++++.+|..+....      ..++||+|+++....    ....+++.+.
T Consensus        19 ~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~d~i~~~~~~~~~~~~~~~~l~~~~   91 (107)
T cd02440          19 GPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPE------ADESFDVIISDPPLHHLVEDLARFLEEAR   91 (107)
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccc------cCCceEEEEEccceeehhhHHHHHHHHHH
Confidence            468899999999999999986444433 35799999999887541      146799999987532    3467788888


Q ss_pred             hcccCCeEEEEe
Q 031568           88 KLLKVGGIAVYD   99 (157)
Q Consensus        88 ~~L~~gG~iv~~   99 (157)
                      +.+++||.+++.
T Consensus        92 ~~l~~~g~~~~~  103 (107)
T cd02440          92 RLLKPGGVLVLT  103 (107)
T ss_pred             HHcCCCCEEEEE
Confidence            999999999874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PLN02672 methionine S-methyltransferase

Probab=98.60  E-value=4.1e-07  Score=80.08  Aligned_cols=93  Identities=12%  Similarity=0.090  Sum_probs=69.3

Q ss_pred             ccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC---------------CCcEEEEEccHHHHHHHHhhcCCCCCce
Q 031568            3 LPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV---------------DHKINFIESEALSVLDQLLKYSENEGSF   67 (157)
Q Consensus         3 ~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~---------------~~~i~~~~~d~~~~l~~~~~~~~~~~~f   67 (157)
                      .-++.++..+|..+|+++|+++++++.|++|++.+++               .++++++++|+.+.++..      ..+|
T Consensus       131 ~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~------~~~f  204 (1082)
T PLN02672        131 WISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN------NIEL  204 (1082)
T ss_pred             HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcccc------CCce
Confidence            3345566677889999999999999999999998653               257999999998765321      2379


Q ss_pred             eEEEEcCCC-------------c----------------------------ccHHHHHHHHhcccCCeEEEEecc
Q 031568           68 DYAFVDADK-------------D----------------------------NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        68 D~I~iD~~~-------------~----------------------------~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      |+|+.+++.             .                            .|..+++.+.++|+|||.++++--
T Consensus       205 DlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG  279 (1082)
T PLN02672        205 DRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG  279 (1082)
T ss_pred             EEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence            999987530             0                            023455566679999999998643

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.60  E-value=3e-07  Score=71.97  Aligned_cols=87  Identities=14%  Similarity=0.067  Sum_probs=66.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++...++.+++++|.++++++.|+++...    .+++++.+|+.+. + +     +.++||+|++...   ...
T Consensus       125 G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p-~-----~~~sFDvVIs~~~L~~~~d  193 (340)
T PLN02490        125 GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-P-F-----PTDYADRYVSAGSIEYWPD  193 (340)
T ss_pred             cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-C-C-----CCCceeEEEEcChhhhCCC
Confidence            44455566666778999999999999999997642    3688999999763 2 1     2568999998642   224


Q ss_pred             cHHHHHHHHhcccCCeEEEEe
Q 031568           79 YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ....++++.+.|+|||.+++-
T Consensus       194 ~~~~L~e~~rvLkPGG~LvIi  214 (340)
T PLN02490        194 PQRGIKEAYRVLKIGGKACLI  214 (340)
T ss_pred             HHHHHHHHHHhcCCCcEEEEE
Confidence            467899999999999998763

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=6.6e-07  Score=72.19  Aligned_cols=91  Identities=16%  Similarity=0.178  Sum_probs=70.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH-
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC-   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~-   80 (157)
                      |+.|.-+..+....+|+++|+++++++.|++|++.+|+. +++++.+++.++.+...    ....+|.|++|++..... 
T Consensus       303 GvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~~~~~----~~~~~d~VvvDPPR~G~~~  377 (432)
T COG2265         303 GVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFTPAWW----EGYKPDVVVVDPPRAGADR  377 (432)
T ss_pred             CCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHhhhcc----ccCCCCEEEECCCCCCCCH
Confidence            455555555556899999999999999999999999997 59999999999987652    135799999999887766 


Q ss_pred             HHHHHHHhcccCCeEEEE
Q 031568           81 NYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~   98 (157)
                      +.++.+. .++|..++.+
T Consensus       378 ~~lk~l~-~~~p~~IvYV  394 (432)
T COG2265         378 EVLKQLA-KLKPKRIVYV  394 (432)
T ss_pred             HHHHHHH-hcCCCcEEEE
Confidence            5566554 4555555544

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.58  E-value=4.7e-07  Score=67.53  Aligned_cols=78  Identities=19%  Similarity=0.293  Sum_probs=65.2

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCc--EEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cccHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHK--INFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~--i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~~~~~~~~~~~   88 (157)
                      +++|+.+|+||+|++.+++...+.++.++  +.++.+||.+. | +     ++.+||+..+-...   ...+..+++++|
T Consensus       130 ~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F-----dd~s~D~yTiafGIRN~th~~k~l~EAYR  202 (296)
T KOG1540|consen  130 ESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F-----DDDSFDAYTIAFGIRNVTHIQKALREAYR  202 (296)
T ss_pred             CceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C-----CCCcceeEEEecceecCCCHHHHHHHHHH
Confidence            38999999999999999999888777544  99999999764 5 3     36889999887643   346778999999


Q ss_pred             cccCCeEEEE
Q 031568           89 LLKVGGIAVY   98 (157)
Q Consensus        89 ~L~~gG~iv~   98 (157)
                      .|||||++.+
T Consensus       203 VLKpGGrf~c  212 (296)
T KOG1540|consen  203 VLKPGGRFSC  212 (296)
T ss_pred             hcCCCcEEEE
Confidence            9999999886

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.57  E-value=3.9e-07  Score=66.02  Aligned_cols=79  Identities=20%  Similarity=0.351  Sum_probs=65.4

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEE-EEEccHHHHHHHHhhcCCCCCceeEEEEc---CCCcccHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFDYAFVD---ADKDNYCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~l~~~~~~~~~~~~fD~I~iD---~~~~~~~~~~~~~~~   88 (157)
                      |..+|+++|.+|.|-+++.+.+++... .+++ ++++++.+. +++.     +++||.|+.-   +......+.++...+
T Consensus        98 p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l-~~l~-----d~s~DtVV~TlvLCSve~~~k~L~e~~r  170 (252)
T KOG4300|consen   98 PINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENL-PQLA-----DGSYDTVVCTLVLCSVEDPVKQLNEVRR  170 (252)
T ss_pred             CCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcC-cccc-----cCCeeeEEEEEEEeccCCHHHHHHHHHH
Confidence            688999999999999999999988754 3666 999998764 5553     7899999753   345567888999999


Q ss_pred             cccCCeEEEE
Q 031568           89 LLKVGGIAVY   98 (157)
Q Consensus        89 ~L~~gG~iv~   98 (157)
                      +|+|||++++
T Consensus       171 lLRpgG~iif  180 (252)
T KOG4300|consen  171 LLRPGGRIIF  180 (252)
T ss_pred             hcCCCcEEEE
Confidence            9999999987

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.57  E-value=1.1e-07  Score=69.40  Aligned_cols=112  Identities=13%  Similarity=0.162  Sum_probs=72.4

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCcccHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~~~~~~~~~~   88 (157)
                      -.+|..||..++.++.|++++... .....++++.-.+++.|.       .++||+|++-=     .-....++|+.|..
T Consensus        78 f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~-------~~~YDlIW~QW~lghLTD~dlv~fL~RCk~  149 (218)
T PF05891_consen   78 FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE-------EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQ  149 (218)
T ss_dssp             -SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-----------TT-EEEEEEES-GGGS-HHHHHHHHHHHHH
T ss_pred             cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC-------CCcEeEEEehHhhccCCHHHHHHHHHHHHH
Confidence            568999999999999999877552 122467888888888763       46899999731     11246789999999


Q ss_pred             cccCCeEEEE-ecccCCcc-ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeE
Q 031568           89 LLKVGGIAVY-DNTLWGGT-VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL  141 (157)
Q Consensus        89 ~L~~gG~iv~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  141 (157)
                      .|+|+|+|++ +|+...+. +.++++++       .++..+.|.+. .+..++..
T Consensus       150 ~L~~~G~IvvKEN~~~~~~~~~D~~DsS-------vTRs~~~~~~l-F~~AGl~~  196 (218)
T PF05891_consen  150 ALKPNGVIVVKENVSSSGFDEFDEEDSS-------VTRSDEHFREL-FKQAGLRL  196 (218)
T ss_dssp             HEEEEEEEEEEEEEESSSEEEEETTTTE-------EEEEHHHHHHH-HHHCT-EE
T ss_pred             hCcCCcEEEEEecCCCCCCcccCCccCe-------eecCHHHHHHH-HHHcCCEE
Confidence            9999999999 57777775 56666542       44445555443 33345443

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.55  E-value=3.3e-07  Score=67.68  Aligned_cols=88  Identities=18%  Similarity=0.301  Sum_probs=68.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~   78 (157)
                      |..+..++...+..+++++|+++.+++.+++.+.     ++++++.+|+.+..  +     .+++||+|++....   ..
T Consensus        46 G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~--~-----~~~~fD~vi~~~~l~~~~~  113 (240)
T TIGR02072        46 GYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP--L-----EDSSFDLIVSNLALQWCDD  113 (240)
T ss_pred             cHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC--C-----CCCceeEEEEhhhhhhccC
Confidence            4456667777788899999999999999988653     37889999987642  1     25689999987532   24


Q ss_pred             cHHHHHHHHhcccCCeEEEEecc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ....++.+.+.|+|||.+++...
T Consensus       114 ~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       114 LSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             HHHHHHHHHHHcCCCcEEEEEeC
Confidence            56788999999999999998643

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.53  E-value=1.6e-06  Score=68.38  Aligned_cols=82  Identities=11%  Similarity=0.090  Sum_probs=59.6

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc-CC---C-----CCceeEEEEcCCCcc-cHHHH
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-SE---N-----EGSFDYAFVDADKDN-YCNYH   83 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~-~~---~-----~~~fD~I~iD~~~~~-~~~~~   83 (157)
                      ..+|++||+++++++.|++|++.++++ +++++.+|+.++++...+. ..   .     ...||+||+|++... ....+
T Consensus       219 ~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l  297 (353)
T TIGR02143       219 FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTC  297 (353)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHH
Confidence            359999999999999999999999985 7999999999988642100 00   0     123899999998655 34455


Q ss_pred             HHHHhcccCCeEEEEe
Q 031568           84 ERLMKLLKVGGIAVYD   99 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~~   99 (157)
                      +.+.+   +++++.+.
T Consensus       298 ~~l~~---~~~ivYvs  310 (353)
T TIGR02143       298 KLVQA---YERILYIS  310 (353)
T ss_pred             HHHHc---CCcEEEEE
Confidence            55543   66666653

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00452 methyltransferase, putative

Probab=98.51  E-value=1.1e-06  Score=68.24  Aligned_cols=93  Identities=12%  Similarity=-0.007  Sum_probs=64.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |+-+..++.. ....|+++|+++.++.+++..-+..+...++.+..+++.+. +.       ..+||+||+.+.   ...
T Consensus       133 G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~~FD~V~s~gvL~H~~d  203 (314)
T TIGR00452       133 GYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LYAFDTVFSMGVLYHRKS  203 (314)
T ss_pred             cHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CCCcCEEEEcchhhccCC
Confidence            3333334433 33589999999999987655433333345788888887654 21       357999998752   335


Q ss_pred             cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ....+..+.+.|+|||.+++.....
T Consensus       204 p~~~L~el~r~LkpGG~Lvletl~i  228 (314)
T TIGR00452       204 PLEHLKQLKHQLVIKGELVLETLVI  228 (314)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEEEEe
Confidence            5678999999999999999876543

Known examples to date are restricted to the proteobacteria.

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.50  E-value=4.8e-07  Score=66.04  Aligned_cols=68  Identities=21%  Similarity=0.207  Sum_probs=56.4

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      .|..+++.  ...|++||+||..++.|++|++-.|+.+||+|++||..+....++..   ...+|+||.-+++
T Consensus       108 ntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~---K~~~~~vf~sppw  175 (263)
T KOG2730|consen  108 NTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD---KIKYDCVFLSPPW  175 (263)
T ss_pred             hHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh---hheeeeeecCCCC
Confidence            45555553  67899999999999999999999999999999999999988766431   3458899988754

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.49  E-value=1.2e-06  Score=68.31  Aligned_cols=93  Identities=14%  Similarity=0.079  Sum_probs=66.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |.-+..++.. ...+|+++|.++.++.+++..-+..+...+++++.+|+.+. +.       .++||+|++-..   ...
T Consensus       134 G~~~~~la~~-g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~FD~V~s~~vl~H~~d  204 (322)
T PRK15068        134 GYHMWRMLGA-GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAFDTVFSMGVLYHRRS  204 (322)
T ss_pred             cHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCcCEEEECChhhccCC
Confidence            4334444444 34479999999999877655444444345799999998754 21       467999998542   235


Q ss_pred             cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ....++.+.+.|+|||.++++....
T Consensus       205 p~~~L~~l~~~LkpGG~lvl~~~~i  229 (322)
T PRK15068        205 PLDHLKQLKDQLVPGGELVLETLVI  229 (322)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEEEe
Confidence            6788999999999999999876543

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.48  E-value=2.4e-06  Score=63.32  Aligned_cols=79  Identities=22%  Similarity=0.333  Sum_probs=63.4

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHhcc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLL   90 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~~L   90 (157)
                      +.+++++|+++.+++.+++++...+.  +++++.+++.+.....      .++||+|++...   ......+++.+.+.|
T Consensus        70 ~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L  141 (233)
T PRK05134         70 GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEH------PGQFDVVTCMEMLEHVPDPASFVRACAKLV  141 (233)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhc------CCCccEEEEhhHhhccCCHHHHHHHHHHHc
Confidence            67899999999999999999987765  5888999988765321      468999988532   234567889999999


Q ss_pred             cCCeEEEEec
Q 031568           91 KVGGIAVYDN  100 (157)
Q Consensus        91 ~~gG~iv~~~  100 (157)
                      +|||.+++..
T Consensus       142 ~~gG~l~v~~  151 (233)
T PRK05134        142 KPGGLVFFST  151 (233)
T ss_pred             CCCcEEEEEe
Confidence            9999998864

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.43  E-value=1.6e-06  Score=69.12  Aligned_cols=83  Identities=14%  Similarity=0.232  Sum_probs=63.0

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCccc
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNY   79 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~   79 (157)
                      +..++.. .+.+|+++|+++++++.|+++++  ++  .+++..+|..+.          .++||.|+.-.     +...+
T Consensus       182 a~~la~~-~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~~fD~Ivs~~~~ehvg~~~~  246 (383)
T PRK11705        182 ARYAAEH-YGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NGQFDRIVSVGMFEHVGPKNY  246 (383)
T ss_pred             HHHHHHH-CCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CCCCCEEEEeCchhhCChHHH
Confidence            3334433 47899999999999999999885  33  488888887643          35799998643     23456


Q ss_pred             HHHHHHHHhcccCCeEEEEeccc
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ..+++.+.++|+|||.+++..+.
T Consensus       247 ~~~l~~i~r~LkpGG~lvl~~i~  269 (383)
T PRK11705        247 RTYFEVVRRCLKPDGLFLLHTIG  269 (383)
T ss_pred             HHHHHHHHHHcCCCcEEEEEEcc
Confidence            78899999999999999986543

>PTZ00146 fibrillarin; Provisional

Probab=98.42  E-value=2.7e-06  Score=65.14  Aligned_cols=91  Identities=14%  Similarity=-0.021  Sum_probs=61.6

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..|..++... +.++|++||+++.+.+...+..+..   .+|.++.+|+..... +.   ...++||+||+|...+...
T Consensus       144 G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~-y~---~~~~~vDvV~~Dva~pdq~  216 (293)
T PTZ00146        144 GTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQK-YR---MLVPMVDVIFADVAQPDQA  216 (293)
T ss_pred             CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhh-hh---cccCCCCEEEEeCCCcchH
Confidence            66677777744 5789999999987665444433321   478899999864221 10   0135799999998644333


Q ss_pred             -HHHHHHHhcccCCeEEEEe
Q 031568           81 -NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 -~~~~~~~~~L~~gG~iv~~   99 (157)
                       .+...+.+.|+|||.+++.
T Consensus       217 ~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        217 RIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             HHHHHHHHHhccCCCEEEEE
Confidence             3445677899999999983

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.41  E-value=1.4e-06  Score=65.66  Aligned_cols=88  Identities=20%  Similarity=0.307  Sum_probs=68.0

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE----ccHHHHHHHHhhcCCCCCceeEEEEcCCC-------
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE----SEALSVLDQLLKYSENEGSFDYAFVDADK-------   76 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~----~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-------   76 (157)
                      ++...|.++++++|.++.++..|.+|++++++.+++.+++    +|+.+-.+.      ..+++|+++.+++.       
T Consensus       166 ll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l------~~~~~dllvsNPPYI~~dD~~  239 (328)
T KOG2904|consen  166 LLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPL------LEGKIDLLVSNPPYIRKDDNR  239 (328)
T ss_pred             HHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccccccc------ccCceeEEecCCCcccccchh
Confidence            4556789999999999999999999999999999999984    444443321      25789999987631       


Q ss_pred             -------------------c---ccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 -------------------D---NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 -------------------~---~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                                         .   .+..++..+.++|+|||.+.++-.
T Consensus       240 ~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  240 QLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             hcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence                               0   123466677799999999998754

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.40  E-value=2.2e-06  Score=60.64  Aligned_cols=89  Identities=9%  Similarity=-0.020  Sum_probs=63.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.-|..++..  +.+++++|+++.+++.+++++..   .++++++++|+.++..       +..+||.|+.+.+.....+
T Consensus        25 G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~-------~~~~~d~vi~n~Py~~~~~   92 (169)
T smart00650       25 GALTEELLER--AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL-------PKLQPYKVVGNLPYNISTP   92 (169)
T ss_pred             cHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCc-------cccCCCEEEECCCcccHHH
Confidence            3334444444  68999999999999999999864   2489999999987632       1346999999986544445


Q ss_pred             HHHHHHh--cccCCeEEEEeccc
Q 031568           82 YHERLMK--LLKVGGIAVYDNTL  102 (157)
Q Consensus        82 ~~~~~~~--~L~~gG~iv~~~~~  102 (157)
                      .+..+.+  .+.++|++++..-.
T Consensus        93 ~i~~~l~~~~~~~~~~l~~q~e~  115 (169)
T smart00650       93 ILFKLLEEPPAFRDAVLMVQKEV  115 (169)
T ss_pred             HHHHHHhcCCCcceEEEEEEHHH
Confidence            5666553  34588999886543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.39  E-value=4.4e-06  Score=65.41  Aligned_cols=84  Identities=19%  Similarity=0.294  Sum_probs=66.3

Q ss_pred             hCC-CcEEEEEeCChhHHHHHHHHH--HHcC---C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-----
Q 031568           11 GNK-ILQITAIDVNRETYEIGLPII--KKAG---V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----   78 (157)
Q Consensus        11 ~~~-~~~v~~ve~~~~~~~~a~~~~--~~~~---~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-----   78 (157)
                      ++| -.+|+-+|.||+|++.++++.  ...+   . ++|++++..|+.+|++..      .+.||.|++|-..++     
T Consensus       309 kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a------~~~fD~vIVDl~DP~tps~~  382 (508)
T COG4262         309 KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA------ADMFDVVIVDLPDPSTPSIG  382 (508)
T ss_pred             hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh------cccccEEEEeCCCCCCcchh
Confidence            567 679999999999999999543  2221   2 468999999999999875      468999999864322     


Q ss_pred             ---cHHHHHHHHhcccCCeEEEEec
Q 031568           79 ---YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ---~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                         -.+++..+.+.|+++|++|+..
T Consensus       383 rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         383 RLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             hhhhHHHHHHHHHhcCcCceEEEec
Confidence               2467888889999999999864

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.39  E-value=2.3e-06  Score=61.83  Aligned_cols=86  Identities=14%  Similarity=0.174  Sum_probs=64.7

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCcc
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDN   78 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~   78 (157)
                      -+++||..  |-.|+++|+++..++.+++.+++.+++  |+....|..+.-  +      .++||+|+...     ..+.
T Consensus        44 NalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~--~------~~~yD~I~st~v~~fL~~~~  111 (192)
T PF03848_consen   44 NALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFD--F------PEEYDFIVSTVVFMFLQREL  111 (192)
T ss_dssp             HHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS---------TTTEEEEEEESSGGGS-GGG
T ss_pred             HHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcc--c------cCCcCEEEEEEEeccCCHHH
Confidence            35566664  889999999999999999998888884  999999986642  2      46799998642     3345


Q ss_pred             cHHHHHHHHhcccCCeEEEEecc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .+.+++.+...++|||+.++...
T Consensus       112 ~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen  112 RPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhhcCCcEEEEEEEe
Confidence            67788999999999999888544

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.39  E-value=2.5e-06  Score=61.12  Aligned_cols=77  Identities=23%  Similarity=0.338  Sum_probs=58.2

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----------ccHHHHH
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHE   84 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----------~~~~~~~   84 (157)
                      +++++|+++++++.|++|++..|+.+.+.+..+|+.+.-  +     ..+++|.|+.|++..           -|..+++
T Consensus        63 ~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~--~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~  135 (179)
T PF01170_consen   63 KIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP--L-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLR  135 (179)
T ss_dssp             -EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG--G-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHH
T ss_pred             cEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc--c-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHH
Confidence            499999999999999999999999888999999998763  2     157899999998532           2556677


Q ss_pred             HHHhcccCCeEEEEe
Q 031568           85 RLMKLLKVGGIAVYD   99 (157)
Q Consensus        85 ~~~~~L~~gG~iv~~   99 (157)
                      .+.+.+++..++++.
T Consensus       136 ~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen  136 ELKRVLKPRAVFLTT  150 (179)
T ss_dssp             HHHCHSTTCEEEEEE
T ss_pred             HHHHHCCCCEEEEEE
Confidence            788889996666653

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.38  E-value=4.8e-06  Score=61.20  Aligned_cols=80  Identities=23%  Similarity=0.248  Sum_probs=64.0

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccHHHHHHHHhcc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLL   90 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~~~~~~~~~~L   90 (157)
                      +.+++++|.++.+++.+++++...+.. ++++..+|+.+.....      .++||+|++..   .......+++.+.+.|
T Consensus        67 ~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L  139 (224)
T TIGR01983        67 GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG------AKSFDVVTCMEVLEHVPDPQAFIRACAQLL  139 (224)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC------CCCccEEEehhHHHhCCCHHHHHHHHHHhc
Confidence            567999999999999999999887763 6899999998764321      36899999864   2335567889999999


Q ss_pred             cCCeEEEEec
Q 031568           91 KVGGIAVYDN  100 (157)
Q Consensus        91 ~~gG~iv~~~  100 (157)
                      ++||.+++..
T Consensus       140 ~~gG~l~i~~  149 (224)
T TIGR01983       140 KPGGILFFST  149 (224)
T ss_pred             CCCcEEEEEe
Confidence            9999988754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR03438 probable methyltransferase

Probab=98.36  E-value=4.1e-06  Score=64.71  Aligned_cols=96  Identities=14%  Similarity=0.121  Sum_probs=64.8

Q ss_pred             cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568            2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----   76 (157)
Q Consensus         2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----   76 (157)
                      |.-|..|+.+.+ +.+++++|++++|++.|++++......-++..+++|+.+.++-....  ..+...++|++...    
T Consensus        75 G~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~~~~~~gs~~~~~~  152 (301)
T TIGR03438        75 SRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRRLGFFPGSTIGNFT  152 (301)
T ss_pred             chhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCeEEEEecccccCCC
Confidence            445666777665 68999999999999999998876432235788999998754322100  00123445554421    


Q ss_pred             -cccHHHHHHHHhcccCCeEEEEe
Q 031568           77 -DNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        77 -~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                       .....+++.+.+.|+|||.++++
T Consensus       153 ~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       153 PEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEe
Confidence             22346788999999999999874

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.33  E-value=7.7e-06  Score=58.32  Aligned_cols=83  Identities=25%  Similarity=0.442  Sum_probs=64.3

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEE----EcC-------CCcccHHH
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF----VDA-------DKDNYCNY   82 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~----iD~-------~~~~~~~~   82 (157)
                      .++++++|.+++++++|+..+++.+.++.|++.+.|+.+-  ...     .++||+|.    .|+       ......-|
T Consensus        91 ~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~-----~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y  163 (227)
T KOG1271|consen   91 QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFL-----SGQFDLVLDKGTLDAISLSPDGPVGRLVVY  163 (227)
T ss_pred             CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--ccc-----ccceeEEeecCceeeeecCCCCcccceeee
Confidence            4569999999999999999999999987899999999763  221     46788886    222       12233557


Q ss_pred             HHHHHhcccCCeEEEEecccC
Q 031568           83 HERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        83 ~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      +..+.++|+|||++++-.|-|
T Consensus       164 ~d~v~~ll~~~gifvItSCN~  184 (227)
T KOG1271|consen  164 LDSVEKLLSPGGIFVITSCNF  184 (227)
T ss_pred             hhhHhhccCCCcEEEEEecCc
Confidence            788889999999999976655

>PHA03411 putative methyltransferase; Provisional

Probab=98.33  E-value=3.9e-06  Score=63.71  Aligned_cols=83  Identities=16%  Similarity=0.209  Sum_probs=58.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      |.-+..++...++.+|+++|+++.+++.+++++      ++++++++|+.++..        ..+||+|+++++...   
T Consensus        76 Gilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~kFDlIIsNPPF~~l~~  141 (279)
T PHA03411         76 GRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEKFDVVISNPPFGKINT  141 (279)
T ss_pred             CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCCCcEEEEcCCccccCc
Confidence            444444555556789999999999999999864      268899999987642        457999999874211   


Q ss_pred             --------c------------HHHHHHHHhcccCCeEEEE
Q 031568           79 --------Y------------CNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 --------~------------~~~~~~~~~~L~~gG~iv~   98 (157)
                              +            ...+.....+|+|+|.+.+
T Consensus       142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~  181 (279)
T PHA03411        142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF  181 (279)
T ss_pred             hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence                    1            2344445568888886654

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.32  E-value=2.1e-06  Score=58.81  Aligned_cols=79  Identities=25%  Similarity=0.368  Sum_probs=57.5

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC------CCc------ccHHHH
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA------DKD------NYCNYH   83 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~------~~~------~~~~~~   83 (157)
                      +|+++|+.+++++.+++.+++.++.+++++++.+=......+.     .+++|+++.+-      ++.      .....+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al   75 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL   75 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence            6899999999999999999999998899999877555433231     34899999863      111      235678


Q ss_pred             HHHHhcccCCeEEEEe
Q 031568           84 ERLMKLLKVGGIAVYD   99 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~~   99 (157)
                      +.++++|+|||++++-
T Consensus        76 ~~al~lL~~gG~i~iv   91 (140)
T PF06962_consen   76 EAALELLKPGGIITIV   91 (140)
T ss_dssp             HHHHHHEEEEEEEEEE
T ss_pred             HHHHHhhccCCEEEEE
Confidence            8899999999999883

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.31  E-value=3.5e-06  Score=66.82  Aligned_cols=93  Identities=20%  Similarity=0.214  Sum_probs=71.6

Q ss_pred             cHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc----
Q 031568            4 PTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----   78 (157)
Q Consensus         4 st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~----   78 (157)
                      -|+++|+ ....+.|++-|.+...+...+.|+.+.|+. +..+...|..++-..-.     .++||.|++|++++.    
T Consensus       255 KTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~-----~~~fDRVLLDAPCSGtgvi  328 (460)
T KOG1122|consen  255 KTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEF-----PGSFDRVLLDAPCSGTGVI  328 (460)
T ss_pred             hHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCccccccccc-----CcccceeeecCCCCCCccc
Confidence            3566666 335889999999999999999999999986 66677888876522111     348999999986542    


Q ss_pred             ---------------------cHHHHHHHHhcccCCeEEEEeccc
Q 031568           79 ---------------------YCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        79 ---------------------~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                                           -.+++..+.+++++||+||+.++.
T Consensus       329 ~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS  373 (460)
T KOG1122|consen  329 SKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS  373 (460)
T ss_pred             ccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence                                 124677778999999999998874

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.30  E-value=2.5e-06  Score=62.37  Aligned_cols=84  Identities=13%  Similarity=0.145  Sum_probs=59.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..++...|+.+++++|+++++++.|++++      .+++++.+|+.+  + +     ++++||+|++....     
T Consensus        55 G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~--~-~-----~~~sfD~V~~~~vL~hl~p  120 (204)
T TIGR03587        55 GMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD--P-F-----KDNFFDLVLTKGVLIHINP  120 (204)
T ss_pred             CHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC--C-C-----CCCCEEEEEECChhhhCCH
Confidence            555666766668899999999999999999864      246788888876  2 1     25789999986532     


Q ss_pred             cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ......++.+.+.+  ++.+++.+.
T Consensus       121 ~~~~~~l~el~r~~--~~~v~i~e~  143 (204)
T TIGR03587       121 DNLPTAYRELYRCS--NRYILIAEY  143 (204)
T ss_pred             HHHHHHHHHHHhhc--CcEEEEEEe
Confidence            22355667777766  345555443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.30  E-value=2.4e-06  Score=64.12  Aligned_cols=76  Identities=17%  Similarity=0.290  Sum_probs=58.8

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHhc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKL   89 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~~   89 (157)
                      .+.+++++|+++.+++.|+++..      ...++.+|+.+. + +     .+++||+|++...   .......+.++.+.
T Consensus        63 ~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~-----~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~  129 (251)
T PRK10258         63 RGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-L-----ATATFDLAWSNLAVQWCGNLSTALRELYRV  129 (251)
T ss_pred             cCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-C-----CCCcEEEEEECchhhhcCCHHHHHHHHHHH
Confidence            46899999999999999988642      246788898653 2 1     2568999998753   23566789999999


Q ss_pred             ccCCeEEEEecc
Q 031568           90 LKVGGIAVYDNT  101 (157)
Q Consensus        90 L~~gG~iv~~~~  101 (157)
                      |+|||.+++...
T Consensus       130 Lk~gG~l~~~~~  141 (251)
T PRK10258        130 VRPGGVVAFTTL  141 (251)
T ss_pred             cCCCeEEEEEeC
Confidence            999999998643

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.29  E-value=3e-06  Score=62.61  Aligned_cols=84  Identities=11%  Similarity=0.133  Sum_probs=58.2

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC--------------CCcEEEEEccHHHHHHHHhhcCCCCCceeE
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVLDQLLKYSENEGSFDY   69 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~   69 (157)
                      ...+||.  .+.+|++||+++.+++.+.+   +.++              ..+|+++++|+.+..+..      .+.||+
T Consensus        51 da~~LA~--~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~------~~~fd~  119 (218)
T PRK13255         51 DMLWLAE--QGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD------LADVDA  119 (218)
T ss_pred             hHHHHHh--CCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCccc------CCCeeE
Confidence            3444554  48899999999999998643   2222              357999999998864321      357999


Q ss_pred             EEE-----cCCCcccHHHHHHHHhcccCCeEEEE
Q 031568           70 AFV-----DADKDNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        70 I~i-----D~~~~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      |+-     ..+...-..+++.+.++|+|||++++
T Consensus       120 v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        120 VYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             EEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            982     22233346788999999999986443

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.29  E-value=8.5e-06  Score=59.95  Aligned_cols=86  Identities=16%  Similarity=0.181  Sum_probs=62.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~   76 (157)
                      |.-+..++.  .+.+|+++|+++++++.|++++...+..+++++.++|+.+.          .++||+|++-..     .
T Consensus        67 G~~~~~la~--~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~fD~ii~~~~l~~~~~  134 (219)
T TIGR02021        67 GLLSIELAK--RGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGEFDIVVCMDVLIHYPA  134 (219)
T ss_pred             CHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCCcCEEEEhhHHHhCCH
Confidence            433444443  36799999999999999999998887766899999998753          357999986321     1


Q ss_pred             cccHHHHHHHHhcccCCeEEEEe
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ......+..+.+.+++++++.+.
T Consensus       135 ~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       135 SDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEC
Confidence            22345677777888877777663

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.28  E-value=2.3e-06  Score=65.14  Aligned_cols=81  Identities=15%  Similarity=0.194  Sum_probs=58.9

Q ss_pred             cccHHHHHhhCC---CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTGNK---ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~---~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |.-|..++...+   ..+++++|+++.+++.|+++.      .++.+..+|+.+. + +     .+++||+|+.-...  
T Consensus        97 G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~-----~~~sfD~I~~~~~~--  161 (272)
T PRK11088         97 GYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-F-----ADQSLDAIIRIYAP--  161 (272)
T ss_pred             CHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-C-----cCCceeEEEEecCC--
Confidence            445556665544   248999999999999997753      3578899998753 3 2     25689999975432  


Q ss_pred             cHHHHHHHHhcccCCeEEEEe
Q 031568           79 YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~   99 (157)
                        ..++++.+.|+|||.+++-
T Consensus       162 --~~~~e~~rvLkpgG~li~~  180 (272)
T PRK11088        162 --CKAEELARVVKPGGIVITV  180 (272)
T ss_pred             --CCHHHHHhhccCCCEEEEE
Confidence              2356788999999999974

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.28  E-value=1.4e-05  Score=57.57  Aligned_cols=87  Identities=20%  Similarity=0.213  Sum_probs=71.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.-..++-.+|..+++.+|.....+...+....+.|++ +++++++.+.+  +.      ...+||+|+.-+-. ....
T Consensus        60 GfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~aRAv~-~l~~  129 (184)
T PF02527_consen   60 GFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVTARAVA-PLDK  129 (184)
T ss_dssp             TTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEEEESSS-SHHH
T ss_pred             CChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEEeehhc-CHHH
Confidence            666677888889999999999999999999999999996 89999999988  21      25789999988754 4678


Q ss_pred             HHHHHHhcccCCeEEEE
Q 031568           82 YHERLMKLLKVGGIAVY   98 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~   98 (157)
                      +++.+.+++++||.+++
T Consensus       130 l~~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen  130 LLELARPLLKPGGRLLA  146 (184)
T ss_dssp             HHHHHGGGEEEEEEEEE
T ss_pred             HHHHHHHhcCCCCEEEE
Confidence            89999999999999886

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.25  E-value=4.7e-06  Score=67.67  Aligned_cols=80  Identities=15%  Similarity=0.159  Sum_probs=63.6

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCcccHHHHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLM   87 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~~~~~~~~~   87 (157)
                      ...+|++||.|+.++...++.+..+++.++|+++++|+.++-.        .+++|+|+..-     ..+..++.+..+.
T Consensus       213 ~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pekvDIIVSElLGsfg~nEl~pE~Lda~~  284 (448)
T PF05185_consen  213 GAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEKVDIIVSELLGSFGDNELSPECLDAAD  284 (448)
T ss_dssp             CESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-EEEEEE---BTTBTTTSHHHHHHHGG
T ss_pred             CCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCceeEEEEeccCCccccccCHHHHHHHH
Confidence            4679999999999998888888899998999999999998732        56899999753     2234567888888


Q ss_pred             hcccCCeEEEEec
Q 031568           88 KLLKVGGIAVYDN  100 (157)
Q Consensus        88 ~~L~~gG~iv~~~  100 (157)
                      +.|+|+|+++-..
T Consensus       285 rfLkp~Gi~IP~~  297 (448)
T PF05185_consen  285 RFLKPDGIMIPSS  297 (448)
T ss_dssp             GGEEEEEEEESSE
T ss_pred             hhcCCCCEEeCcc
Confidence            9999999998653

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK10742 putative methyltransferase; Provisional

Probab=98.24  E-value=8.1e-06  Score=61.06  Aligned_cols=68  Identities=12%  Similarity=0.188  Sum_probs=53.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc------CC--CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA------GV--DHKINFIESEALSVLDQLLKYSENEGSFDYAFVD   73 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~------~~--~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD   73 (157)
                      |+....+.+..-+++|+++|.+|..+.+.++++++.      +.  ..+++++++|+.++++..      ..+||+||+|
T Consensus        98 GlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~------~~~fDVVYlD  171 (250)
T PRK10742         98 GLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------TPRPQVVYLD  171 (250)
T ss_pred             CccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC------CCCCcEEEEC
Confidence            444444333334788999999999999999999985      32  257999999999999864      4579999999


Q ss_pred             CC
Q 031568           74 AD   75 (157)
Q Consensus        74 ~~   75 (157)
                      +.
T Consensus       172 PM  173 (250)
T PRK10742        172 PM  173 (250)
T ss_pred             CC
Confidence            84

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.24  E-value=2e-06  Score=65.31  Aligned_cols=79  Identities=20%  Similarity=0.269  Sum_probs=57.9

Q ss_pred             CcEEEEEeCChhHHHHHHHHHH------Hc--------------------CCCCcEEEEEccHHHHHHHHhhcCCCCCce
Q 031568           14 ILQITAIDVNRETYEIGLPIIK------KA--------------------GVDHKINFIESEALSVLDQLLKYSENEGSF   67 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~------~~--------------------~~~~~i~~~~~d~~~~l~~~~~~~~~~~~f   67 (157)
                      +.+|+++|+|+.+++.|++.+-      ..                    ++.++|++.++|+.+...       +.++|
T Consensus       132 ~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-------~~~~f  204 (264)
T smart00138      132 DVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-------PLGDF  204 (264)
T ss_pred             CeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-------ccCCC
Confidence            5799999999999999998531      00                    012468899999876421       15689


Q ss_pred             eEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 031568           68 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        68 D~I~iD~~-----~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      |+|++-..     .+.....++.+.+.|+|||.+++.
T Consensus       205 D~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      205 DLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             CEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            99998431     123346888899999999999984

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.24  E-value=1.1e-05  Score=65.87  Aligned_cols=89  Identities=25%  Similarity=0.307  Sum_probs=63.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcCCCc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAFVDADKD---   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~~~~---   77 (157)
                      |.-|..++..  ..+|+++|+++++++.+++.   .+..++++++.+|+.+. ++ +     +.++||+|++.....   
T Consensus        49 G~~~~~la~~--~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~-~-----~~~~fD~I~~~~~l~~l~  117 (475)
T PLN02336         49 GRFTGELAKK--AGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLN-I-----SDGSVDLIFSNWLLMYLS  117 (475)
T ss_pred             CHHHHHHHhh--CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccC-C-----CCCCEEEEehhhhHHhCC
Confidence            4445555554  56999999999999887652   23345799999998642 22 2     256899999875321   


Q ss_pred             --ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 --NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 --~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                        ....+++.+.+.|+|||++++.+.
T Consensus       118 ~~~~~~~l~~~~r~Lk~gG~l~~~d~  143 (475)
T PLN02336        118 DKEVENLAERMVKWLKVGGYIFFRES  143 (475)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence              245788889999999999988544

>PHA03412 putative methyltransferase; Provisional

Probab=98.23  E-value=2e-05  Score=58.64  Aligned_cols=76  Identities=20%  Similarity=0.352  Sum_probs=57.4

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----c---------
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----N---------   78 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----~---------   78 (157)
                      +..+|+++|+++.++++|++|+.      ++.++.+|+....  +      .++||+|+.+++-.     .         
T Consensus        75 ~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~--~------~~~FDlIIsNPPY~~~~~~d~~ar~~g~~  140 (241)
T PHA03412         75 KPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE--F------DTLFDMAISNPPFGKIKTSDFKGKYTGAE  140 (241)
T ss_pred             CCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc--c------cCCccEEEECCCCCCccccccCCcccccH
Confidence            46799999999999999998752      4789999987542  1      45899999987421     0         


Q ss_pred             -cHHHHHHHHhcccCCeEEEEeccc
Q 031568           79 -YCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        79 -~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                       ...+++.+.+++++|+.|+-.+++
T Consensus       141 ~~~~li~~A~~Ll~~G~~ILP~~~~  165 (241)
T PHA03412        141 FEYKVIERASQIARQGTFIIPQMSA  165 (241)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCcccc
Confidence             234677778888888887766554

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.21  E-value=5.4e-06  Score=61.01  Aligned_cols=86  Identities=13%  Similarity=0.173  Sum_probs=58.4

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC--------------CCcEEEEEccHHHHHHHHhhcCCCCCceeEE
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVLDQLLKYSENEGSFDYA   70 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I   70 (157)
                      ..+||.  .+-+|+++|+++.+++.+.+   ++++              ..+|+++++|+.+.-...      .++||.|
T Consensus        49 a~~LA~--~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~------~~~fD~i  117 (213)
T TIGR03840        49 LAWLAE--QGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD------LGPVDAV  117 (213)
T ss_pred             HHHHHh--CCCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCccc------CCCcCEE
Confidence            344554  48899999999999998643   2222              246899999998753211      3468888


Q ss_pred             EEcC-----CCcccHHHHHHHHhcccCCeEEEEecc
Q 031568           71 FVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        71 ~iD~-----~~~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +-..     +......+++.+.++|+|||++++...
T Consensus       118 ~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       118 YDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             EechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            7322     222345688899999999998666433

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.19  E-value=1e-05  Score=62.97  Aligned_cols=66  Identities=12%  Similarity=0.251  Sum_probs=50.8

Q ss_pred             HHHhhCCCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            7 LFMTGNKILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         7 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      +++.+.++.+++++|+++.+++.|++|++.+ ++.++|+++. .+....+..+..   +.++||+|+++++
T Consensus       131 lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~fDlivcNPP  198 (321)
T PRK11727        131 LIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNERFDATLCNPP  198 (321)
T ss_pred             HHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCceEEEEeCCC
Confidence            3455667899999999999999999999999 7988999864 455554433210   2468999999985

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.17  E-value=2e-05  Score=58.09  Aligned_cols=85  Identities=16%  Similarity=0.132  Sum_probs=59.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~   76 (157)
                      |..+..++..  +.+++++|+++.+++.|++++...+..++++++.+|..    ..      .++||+|++...     .
T Consensus        75 G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~------~~~fD~v~~~~~l~~~~~  142 (230)
T PRK07580         75 GSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL------LGRFDTVVCLDVLIHYPQ  142 (230)
T ss_pred             CHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc------cCCcCEEEEcchhhcCCH
Confidence            4455555554  46799999999999999999998887668999999932    11      467999987532     1


Q ss_pred             cccHHHHHHHHhcccCCeEEEE
Q 031568           77 DNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      +.....++.+.+.+++++++.+
T Consensus       143 ~~~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        143 EDAARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             HHHHHHHHHHHhhcCCeEEEEE
Confidence            2334556666666655555443

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=98.14  E-value=7.7e-05  Score=56.93  Aligned_cols=122  Identities=16%  Similarity=0.258  Sum_probs=93.5

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHc--CCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-------cHHHH
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKA--GVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-------YCNYH   83 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~--~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-------~~~~~   83 (157)
                      -..++.+|++...++..++++...  |.+ .+|.++.||...+++..+     .++||.|+.|.+.+.       ...++
T Consensus       145 ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-----~~~~dVii~dssdpvgpa~~lf~~~~~  219 (337)
T KOG1562|consen  145 VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-----ENPFDVIITDSSDPVGPACALFQKPYF  219 (337)
T ss_pred             ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-----cCCceEEEEecCCccchHHHHHHHHHH
Confidence            457889999999999999998874  444 679999999999998764     678999999875432       24578


Q ss_pred             HHHHhcccCCeEEEEe-cccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecC----CeeEEEE
Q 031568           84 ERLMKLLKVGGIAVYD-NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG----DGITICR  154 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~----~G~~v~~  154 (157)
                      +.+.+.|+++|+++.. ++.|--             . ...+.+++|...+...-.+-.+..|+.    -|+.+|-
T Consensus       220 ~~v~~aLk~dgv~~~q~ec~wl~-------------~-~~i~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s  281 (337)
T KOG1562|consen  220 GLVLDALKGDGVVCTQGECMWLH-------------L-DYIKEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCS  281 (337)
T ss_pred             HHHHHhhCCCcEEEEecceehHH-------------H-HHHHHHHHhHHHhcCccceeeecCCCCccceEEEEEec
Confidence            8889999999999874 333310             1 167788999888888788888888864    4555554

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.13  E-value=1e-05  Score=63.00  Aligned_cols=91  Identities=18%  Similarity=0.184  Sum_probs=71.6

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCCc--
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKD--   77 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--   77 (157)
                      +|..+.+..+.+=+++++++|++..|+.-|+.|++..+++ ...+... |+.+. + +     +..++|.|..|++-.  
T Consensus       206 cGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~l-p-l-----~~~~vdaIatDPPYGrs  277 (347)
T COG1041         206 CGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNL-P-L-----RDNSVDAIATDPPYGRS  277 (347)
T ss_pred             CCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccC-C-C-----CCCccceEEecCCCCcc
Confidence            3566667777777999999999999999999999999986 4555555 88764 4 4     245699999998521  


Q ss_pred             ----------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 ----------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 ----------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                                -|.+.++.+.+.|++||.+++-
T Consensus       278 t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~  309 (347)
T COG1041         278 TKIKGEGLDELYEEALESASEVLKPGGRIVFA  309 (347)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence                      1667888888999999999873

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.12  E-value=2.7e-05  Score=62.01  Aligned_cols=90  Identities=17%  Similarity=0.215  Sum_probs=67.4

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+=.+..+... ...+|++-|+|+++++.+++|++.+++.+ ++++.+.|+...+..      ....||+|=+|+-- ..
T Consensus        61 GvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~fD~IDlDPfG-Sp  133 (377)
T PF02005_consen   61 GVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS------RQERFDVIDLDPFG-SP  133 (377)
T ss_dssp             SHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH------STT-EEEEEE--SS---
T ss_pred             cHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh------ccccCCEEEeCCCC-Cc
Confidence            44444556653 45799999999999999999999999987 799999999988742      15789999999853 34


Q ss_pred             HHHHHHHHhcccCCeEEEE
Q 031568           80 CNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~   98 (157)
                      ..+++.+.+.++.||+|.+
T Consensus       134 ~pfldsA~~~v~~gGll~v  152 (377)
T PF02005_consen  134 APFLDSALQAVKDGGLLCV  152 (377)
T ss_dssp             HHHHHHHHHHEEEEEEEEE
T ss_pred             cHhHHHHHHHhhcCCEEEE
Confidence            6789999999999999987

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.11  E-value=6.1e-05  Score=56.03  Aligned_cols=96  Identities=18%  Similarity=0.236  Sum_probs=65.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC-----C-----------------------------CcEEEEE
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV-----D-----------------------------HKINFIE   47 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-----~-----------------------------~~i~~~~   47 (157)
                      |.=|+.+|+.+....|+++|+|+..+..|+++++...-     .                             +++.+..
T Consensus        70 G~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~~p~n~~f~~  149 (288)
T KOG2899|consen   70 GFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTTDFPDNVWFQK  149 (288)
T ss_pred             chhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccccCCcchhccc
Confidence            55678888888888899999999999999999865311     0                             0111111


Q ss_pred             ----ccHHHHHHHHhhcCCCCCceeEEEEcC---------CCcccHHHHHHHHhcccCCeEEEEecccC
Q 031568           48 ----SEALSVLDQLLKYSENEGSFDYAFVDA---------DKDNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        48 ----~d~~~~l~~~~~~~~~~~~fD~I~iD~---------~~~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                          -+..+++ .+     ....||.|++-.         .......+|..+.++|.|||++|++-=-|
T Consensus       150 ~n~vle~~dfl-~~-----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpW  212 (288)
T KOG2899|consen  150 ENYVLESDDFL-DM-----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPW  212 (288)
T ss_pred             ccEEEecchhh-hh-----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCch
Confidence                1111223 11     146799998632         23457789999999999999999974434

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.10  E-value=1.1e-05  Score=63.79  Aligned_cols=84  Identities=19%  Similarity=0.215  Sum_probs=50.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc---------CCCCCceeEEEE
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY---------SENEGSFDYAFV   72 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~---------~~~~~~fD~I~i   72 (157)
                      |+.|.-+..+....+|++||.++++++.|++|++.++++ +++++.+++.++...+...         ......+|.|++
T Consensus       206 G~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vil  284 (352)
T PF05958_consen  206 GVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVIL  284 (352)
T ss_dssp             TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE
T ss_pred             cCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEE
Confidence            444444444445789999999999999999999999996 8999999887653322100         001236899999


Q ss_pred             cCCCcccHH-HHHHH
Q 031568           73 DADKDNYCN-YHERL   86 (157)
Q Consensus        73 D~~~~~~~~-~~~~~   86 (157)
                      ||+..+..+ ..+.+
T Consensus       285 DPPR~G~~~~~~~~~  299 (352)
T PF05958_consen  285 DPPRAGLDEKVIELI  299 (352)
T ss_dssp             ---TT-SCHHHHHHH
T ss_pred             cCCCCCchHHHHHHH
Confidence            998766443 44444

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.10  E-value=1.9e-05  Score=57.89  Aligned_cols=85  Identities=14%  Similarity=0.110  Sum_probs=57.8

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCCCc-
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADKD-   77 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~~~-   77 (157)
                      |..|..+++.. +.++|++||+++.           .+. .+++++++|+.+.  ++++... ...++||+|++|.... 
T Consensus        63 G~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~-~~~~~~D~V~S~~~~~~  129 (209)
T PRK11188         63 GGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLER-VGDSKVQVVMSDMAPNM  129 (209)
T ss_pred             CHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHH-hCCCCCCEEecCCCCcc
Confidence            66666777754 5689999999981           122 3589999998763  2222110 0256899999986321 


Q ss_pred             ------c-------cHHHHHHHHhcccCCeEEEEe
Q 031568           78 ------N-------YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 ------~-------~~~~~~~~~~~L~~gG~iv~~   99 (157)
                            .       ....++.+.+.|+|||.+++.
T Consensus       130 ~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        130 SGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence                  0       134678888999999999985

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.08  E-value=8.2e-06  Score=61.17  Aligned_cols=80  Identities=19%  Similarity=0.207  Sum_probs=59.4

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCC-----cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHE   84 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~   84 (157)
                      -+++|++||.++++++.|++........+     ++++.+.++...          .++||.|++---   .....++++
T Consensus       110 lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~~fDaVvcsevleHV~dp~~~l~  179 (282)
T KOG1270|consen  110 LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TGKFDAVVCSEVLEHVKDPQEFLN  179 (282)
T ss_pred             hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------ccccceeeeHHHHHHHhCHHHHHH
Confidence            37999999999999999999954433322     366666666543          456999997431   224577888


Q ss_pred             HHHhcccCCeEEEEeccc
Q 031568           85 RLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        85 ~~~~~L~~gG~iv~~~~~  102 (157)
                      .+.++|+|||.+++.++.
T Consensus       180 ~l~~~lkP~G~lfittin  197 (282)
T KOG1270|consen  180 CLSALLKPNGRLFITTIN  197 (282)
T ss_pred             HHHHHhCCCCceEeeehh
Confidence            899999999999886553

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.07  E-value=7.9e-05  Score=55.43  Aligned_cols=81  Identities=20%  Similarity=0.262  Sum_probs=50.4

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHER   85 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~   85 (157)
                      ++...+..+|+.+|+|+..++..++..++.|+.  |+.++.|..+-+|.-.     .++||.+|.|++..  ...-++..
T Consensus        61 ~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~~fD~f~TDPPyT~~G~~LFlsR  133 (243)
T PF01861_consen   61 LALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RGKFDVFFTDPPYTPEGLKLFLSR  133 (243)
T ss_dssp             HHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS-BSEEEE---SSHHHHHHHHHH
T ss_pred             HHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hcCCCEEEeCCCCCHHHHHHHHHH
Confidence            444556789999999999999999999999984  9999999999988532     57899999998632  34446677


Q ss_pred             HHhcccCCeE
Q 031568           86 LMKLLKVGGI   95 (157)
Q Consensus        86 ~~~~L~~gG~   95 (157)
                      +...|+..|.
T Consensus       134 gi~~Lk~~g~  143 (243)
T PF01861_consen  134 GIEALKGEGC  143 (243)
T ss_dssp             HHHTB-STT-
T ss_pred             HHHHhCCCCc
Confidence            7778887774

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=4.7e-05  Score=54.60  Aligned_cols=67  Identities=13%  Similarity=0.227  Sum_probs=52.9

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----cccHHHHHH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHER   85 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----~~~~~~~~~   85 (157)
                      .+...+|+++|+||++++.+++|..+.  ..+++++.+|+.++          ...+|.++++++.     ..-..+++.
T Consensus        65 ~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~----------~~~~dtvimNPPFG~~~rhaDr~Fl~~  132 (198)
T COG2263          65 LLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDF----------RGKFDTVIMNPPFGSQRRHADRPFLLK  132 (198)
T ss_pred             hcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhc----------CCccceEEECCCCccccccCCHHHHHH
Confidence            446789999999999999999999993  35899999999876          5689999999853     223456666


Q ss_pred             HHhc
Q 031568           86 LMKL   89 (157)
Q Consensus        86 ~~~~   89 (157)
                      +++.
T Consensus       133 Ale~  136 (198)
T COG2263         133 ALEI  136 (198)
T ss_pred             HHHh
Confidence            6554

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.04  E-value=5.8e-05  Score=55.25  Aligned_cols=89  Identities=17%  Similarity=0.158  Sum_probs=61.0

Q ss_pred             ccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-CcccHH
Q 031568            3 LPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-KDNYCN   81 (157)
Q Consensus         3 ~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-~~~~~~   81 (157)
                      +=..+|+......+++++|+++..++.|++++++.|+.++|+++.||..+.++.       .+..|.|++-+- -.-..+
T Consensus        10 yLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivIAGMGG~lI~~   82 (205)
T PF04816_consen   10 YLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVIAGMGGELIIE   82 (205)
T ss_dssp             HHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEEEEE-HHHHHH
T ss_pred             HHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEEecCCHHHHHH
Confidence            334566666677799999999999999999999999999999999999988752       334899998652 223456


Q ss_pred             HHHHHHhcccCCeEEEE
Q 031568           82 YHERLMKLLKVGGIAVY   98 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~   98 (157)
                      +++.....++....+|.
T Consensus        83 ILe~~~~~~~~~~~lIL   99 (205)
T PF04816_consen   83 ILEAGPEKLSSAKRLIL   99 (205)
T ss_dssp             HHHHTGGGGTT--EEEE
T ss_pred             HHHhhHHHhccCCeEEE
Confidence            66666666665555555

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.03  E-value=6.3e-05  Score=62.13  Aligned_cols=92  Identities=13%  Similarity=0.008  Sum_probs=73.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc---CCCc-
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD---ADKD-   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD---~~~~-   77 (157)
                      |=.++.+|..+|+..++++|+....+..+.+.+.+.++. ++.++.+|+..+...+.     ++++|.|++.   ++.. 
T Consensus       359 G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~-----~~sv~~i~i~FPDPWpKk  432 (506)
T PRK01544        359 GEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLP-----NNSLDGIYILFPDPWIKN  432 (506)
T ss_pred             hHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcC-----cccccEEEEECCCCCCCC
Confidence            445667888899999999999999999998888888885 89999999866555442     5789999884   4321 


Q ss_pred             -------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 -------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 -------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                             -.+++++...+.|+|||.+-+.
T Consensus       433 rh~krRl~~~~fl~~~~~~Lk~gG~i~~~  461 (506)
T PRK01544        433 KQKKKRIFNKERLKILQDKLKDNGNLVFA  461 (506)
T ss_pred             CCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence                   1467899999999999998763

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=2.5e-05  Score=58.89  Aligned_cols=89  Identities=12%  Similarity=0.105  Sum_probs=65.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      ++|+++.-+-.|.++++++|.++..++.|++.+++.|+.+++++++-|....--..     ....+|.||+|-+.+  ..
T Consensus       118 SlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~-----ks~~aDaVFLDlPaP--w~  190 (314)
T KOG2915|consen  118 SLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI-----KSLKADAVFLDLPAP--WE  190 (314)
T ss_pred             hHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc-----cccccceEEEcCCCh--hh
Confidence            35666666666999999999999999999999999999999999999886531111     146799999997533  33


Q ss_pred             HHHHHHhcccCCeEEE
Q 031568           82 YHERLMKLLKVGGIAV   97 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv   97 (157)
                      .+..+.+.|+.+|.-+
T Consensus       191 AiPha~~~lk~~g~r~  206 (314)
T KOG2915|consen  191 AIPHAAKILKDEGGRL  206 (314)
T ss_pred             hhhhhHHHhhhcCceE
Confidence            3444555666666433

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.00  E-value=5.2e-05  Score=54.00  Aligned_cols=93  Identities=23%  Similarity=0.239  Sum_probs=56.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--CCCcEEEEEccHHHHH-HHHhhcCCCCCceeEEEE-cC--C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVL-DQLLKYSENEGSFDYAFV-DA--D   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~l-~~~~~~~~~~~~fD~I~i-D~--~   75 (157)
                      |+..+.+++..+..+|+..|.++ .++.++.|++.++  ...++++..-|..+.. +...    ...+||+|+. |.  .
T Consensus        57 Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~~~~~D~IlasDv~Y~  131 (173)
T PF10294_consen   57 GLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----EPHSFDVILASDVLYD  131 (173)
T ss_dssp             SHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----S-SSBSEEEEES--S-
T ss_pred             chhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----ccccCCEEEEecccch
Confidence            55555566555788999999999 9999999999987  5567888887765533 2222    1468999985 43  2


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEe
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ...++.+++.+.++|+++|.+++-
T Consensus       132 ~~~~~~L~~tl~~ll~~~~~vl~~  155 (173)
T PF10294_consen  132 EELFEPLVRTLKRLLKPNGKVLLA  155 (173)
T ss_dssp             GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEE
Confidence            345677888888999998886654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.99  E-value=1.2e-05  Score=58.60  Aligned_cols=131  Identities=14%  Similarity=0.176  Sum_probs=62.9

Q ss_pred             cHHHHHh---h-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCCC-
Q 031568            4 PTKLFMT---G-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADK-   76 (157)
Q Consensus         4 st~~l~~---~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~~-   76 (157)
                      |..++|.   . .+.++|++||++......  +.++.-...++|++++||..+.  +.+...- .......+|+.|+.. 
T Consensus        46 Sli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~-~~~~~~vlVilDs~H~  122 (206)
T PF04989_consen   46 SLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVREL-ASPPHPVLVILDSSHT  122 (206)
T ss_dssp             HHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS-----SSEEEEESS---
T ss_pred             hHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHh-hccCCceEEEECCCcc
Confidence            5555544   3 378999999997554432  2233334557999999998643  2222100 012457799999863 


Q ss_pred             -cccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCee
Q 031568           77 -DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ  140 (157)
Q Consensus        77 -~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  140 (157)
                       ......++...+++++|+.+|+.+.............-| +..+  ....++..+.|..+++|.
T Consensus       123 ~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~-w~~g--~~p~~av~~fL~~~~~f~  184 (206)
T PF04989_consen  123 HEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRP-WGPG--NNPKTAVKEFLAEHPDFE  184 (206)
T ss_dssp             -SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS----------------HHHHHHHHHTTTTEE
T ss_pred             HHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccc-hhhh--hHHHHHHHHHHHHCCCcE
Confidence             345667777889999999999977665433222111111 1110  112444445578888865

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.94  E-value=4.8e-05  Score=54.71  Aligned_cols=83  Identities=14%  Similarity=0.170  Sum_probs=53.7

Q ss_pred             cHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCCCc---
Q 031568            4 PTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADKD---   77 (157)
Q Consensus         4 st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~~~---   77 (157)
                      -|..++... +.++|+++|+++.+           +. ++++++.+|+.+.  +..+.+. .+.++||+|++|+...   
T Consensus        46 ~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~-~~~~~~D~V~~~~~~~~~g  112 (188)
T TIGR00438        46 WSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRER-VGDDKVDVVMSDAAPNISG  112 (188)
T ss_pred             HHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHH-hCCCCccEEEcCCCCCCCC
Confidence            344445443 67899999999864           12 3578888887542  1111000 0245799999985311   


Q ss_pred             ----c-------cHHHHHHHHhcccCCeEEEEe
Q 031568           78 ----N-------YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 ----~-------~~~~~~~~~~~L~~gG~iv~~   99 (157)
                          .       ....+..+.+.|+|||.+++.
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438       113 YWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             CccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence                0       146788888999999999985

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.94  E-value=5.6e-05  Score=55.33  Aligned_cols=96  Identities=19%  Similarity=0.224  Sum_probs=71.5

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      ||+....+..+ |-.+-+-||.+|+.++..|.+...  ..++|.+..|-..+.++.+.     ++.||-|+.|.-.+.|+
T Consensus       112 MgIidT~iQe~-~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~g~WeDvl~~L~-----d~~FDGI~yDTy~e~yE  183 (271)
T KOG1709|consen  112 MGIIDTFIQEA-PPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILEGRWEDVLNTLP-----DKHFDGIYYDTYSELYE  183 (271)
T ss_pred             hHHHHHHHhhc-CCcceEEEecCHHHHHHHHhcccc--cccceEEEecchHhhhcccc-----ccCcceeEeechhhHHH
Confidence            45444444444 566677899999999877765432  23689999999999999884     67899999998655444


Q ss_pred             ---HHHHHHHhcccCCeEEEEecccCC
Q 031568           81 ---NYHERLMKLLKVGGIAVYDNTLWG  104 (157)
Q Consensus        81 ---~~~~~~~~~L~~gG~iv~~~~~~~  104 (157)
                         ++.+.+.++|+|+|++-+-|.+..
T Consensus       184 dl~~~hqh~~rLLkP~gv~SyfNg~~~  210 (271)
T KOG1709|consen  184 DLRHFHQHVVRLLKPEGVFSYFNGLGA  210 (271)
T ss_pred             HHHHHHHHHhhhcCCCceEEEecCccc
Confidence               456778899999999988766543

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.91  E-value=5.3e-05  Score=58.39  Aligned_cols=65  Identities=12%  Similarity=0.155  Sum_probs=50.4

Q ss_pred             HHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            5 TKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         5 t~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |..++...+ +++|+++|.||++++.|++.+..   .++++++++|..++...+.+   .-.++|.|++|.+
T Consensus        34 S~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~---~~~~vDgIl~DLG   99 (296)
T PRK00050         34 SRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE---GLGKVDGILLDLG   99 (296)
T ss_pred             HHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc---CCCccCEEEECCC
Confidence            445555554 79999999999999999998865   35899999999998665521   0127999999864

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=3.3e-05  Score=56.19  Aligned_cols=87  Identities=17%  Similarity=0.200  Sum_probs=65.0

Q ss_pred             cccHHHHHh--hCCCcEEEEEeCChhHHHHHHHHHHHcC--------C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEE
Q 031568            2 HLPTKLFMT--GNKILQITAIDVNRETYEIGLPIIKKAG--------V-DHKINFIESEALSVLDQLLKYSENEGSFDYA   70 (157)
Q Consensus         2 g~st~~l~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~--------~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I   70 (157)
                      |+=|++++.  ..++...++||..|+.++.+++|++..-        + ..++.++.||.....+.       ..+||.|
T Consensus        94 GYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-------~a~YDaI  166 (237)
T KOG1661|consen   94 GYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-------QAPYDAI  166 (237)
T ss_pred             cHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc-------cCCcceE
Confidence            444555553  3456667999999999999999998753        2 24688999999876542       5789999


Q ss_pred             EEcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568           71 FVDADKDNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        71 ~iD~~~~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      ++.+..+.   ..+.....|++||.+++
T Consensus       167 hvGAaa~~---~pq~l~dqL~~gGrlli  191 (237)
T KOG1661|consen  167 HVGAAASE---LPQELLDQLKPGGRLLI  191 (237)
T ss_pred             EEccCccc---cHHHHHHhhccCCeEEE
Confidence            99876544   34567788889988887

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.87  E-value=7.9e-05  Score=51.49  Aligned_cols=71  Identities=23%  Similarity=0.312  Sum_probs=49.7

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHhcc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLL   90 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~~L   90 (157)
                      +.+++++|+++.+++.           .++....-+..+...       +.++||+|++...   .++...+++.+.++|
T Consensus        44 ~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~-------~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~L  105 (161)
T PF13489_consen   44 GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPF-------PDGSFDLIICNDVLEHLPDPEEFLKELSRLL  105 (161)
T ss_dssp             TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHC-------HSSSEEEEEEESSGGGSSHHHHHHHHHHHCE
T ss_pred             CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhc-------cccchhhHhhHHHHhhcccHHHHHHHHHHhc
Confidence            4499999999999987           122222222222211       1678999998753   234678899999999


Q ss_pred             cCCeEEEEeccc
Q 031568           91 KVGGIAVYDNTL  102 (157)
Q Consensus        91 ~~gG~iv~~~~~  102 (157)
                      +|||.+++....
T Consensus       106 kpgG~l~~~~~~  117 (161)
T PF13489_consen  106 KPGGYLVISDPN  117 (161)
T ss_dssp             EEEEEEEEEEEB
T ss_pred             CCCCEEEEEEcC
Confidence            999999997654

...

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.84  E-value=9e-05  Score=55.00  Aligned_cols=90  Identities=11%  Similarity=0.094  Sum_probs=59.8

Q ss_pred             HHHHhhCCCcEEEEEeCChhHHHHHHHHH------HH-----cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568            6 KLFMTGNKILQITAIDVNRETYEIGLPII------KK-----AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         6 ~~l~~~~~~~~v~~ve~~~~~~~~a~~~~------~~-----~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      .+||.  .+-+|+++|+++.+++.+.+..      ..     .--..+++++++|+.++-+...    ..++||+|+--+
T Consensus        59 ~~LA~--~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~----~~~~fD~VyDra  132 (226)
T PRK13256         59 LFFLS--KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN----NLPVFDIWYDRG  132 (226)
T ss_pred             HHHHh--CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc----ccCCcCeeeeeh
Confidence            44544  3778999999999999885521      00     0012479999999998622100    135799987432


Q ss_pred             -----CCcccHHHHHHHHhcccCCeEEEEecc
Q 031568           75 -----DKDNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        75 -----~~~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                           +...-..|.+.+.++|+|||.++.-..
T Consensus       133 ~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        133 AYIALPNDLRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             hHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence                 222345688888999999999987544

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.83  E-value=0.0001  Score=58.29  Aligned_cols=76  Identities=18%  Similarity=0.225  Sum_probs=60.0

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----------ccHHHHH
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHE   84 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----------~~~~~~~   84 (157)
                      .++++|+|+.+++.|+.|++++|+.+.|+|.++|+...-+       +.+.+|+|+++++..           -|..+.+
T Consensus       256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~-------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~  328 (381)
T COG0116         256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKE-------PLEEYGVVISNPPYGERLGSEALVAKLYREFGR  328 (381)
T ss_pred             eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCC-------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHH
Confidence            4789999999999999999999999999999999987532       125899999998531           1444555


Q ss_pred             HHHhcccCCeEEEE
Q 031568           85 RLMKLLKVGGIAVY   98 (157)
Q Consensus        85 ~~~~~L~~gG~iv~   98 (157)
                      .+.+.++..+..|+
T Consensus       329 ~lk~~~~~ws~~v~  342 (381)
T COG0116         329 TLKRLLAGWSRYVF  342 (381)
T ss_pred             HHHHHhcCCceEEE
Confidence            55577777777766

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.81  E-value=3.4e-05  Score=56.98  Aligned_cols=85  Identities=16%  Similarity=0.242  Sum_probs=55.6

Q ss_pred             HHHHhhCCCcEEEEEeCChhHHHHHHH-HHHHc-----C-----CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568            6 KLFMTGNKILQITAIDVNRETYEIGLP-IIKKA-----G-----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         6 ~~l~~~~~~~~v~~ve~~~~~~~~a~~-~~~~~-----~-----~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      .+|+.  .+-+|+++|+++.+++.+.+ +....     +     -..+|++++||..+.-+..      .++||+|+=-+
T Consensus        53 ~~La~--~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~------~g~fD~iyDr~  124 (218)
T PF05724_consen   53 LWLAE--QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED------VGKFDLIYDRT  124 (218)
T ss_dssp             HHHHH--TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC------HHSEEEEEECS
T ss_pred             HHHHH--CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh------cCCceEEEEec
Confidence            34554  37899999999999999833 22110     0     1246899999999853321      25799998321


Q ss_pred             -----CCcccHHHHHHHHhcccCCeEEEE
Q 031568           75 -----DKDNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        75 -----~~~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                           +...-.+|.+.+.++|+|||.++.
T Consensus       125 ~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL  153 (218)
T PF05724_consen  125 FLCALPPEMRERYAQQLASLLKPGGRGLL  153 (218)
T ss_dssp             STTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred             ccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence                 223446788899999999999544

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK05785 hypothetical protein; Provisional

Probab=97.79  E-value=0.00011  Score=54.57  Aligned_cols=76  Identities=12%  Similarity=0.076  Sum_probs=54.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++... +.+|+++|++++|++.|++.         ...+++|+.+. + +     ++++||+|++...   ..+
T Consensus        63 G~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p-~-----~d~sfD~v~~~~~l~~~~d  125 (226)
T PRK05785         63 GELSYHFKKVF-KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-P-F-----RDKSFDVVMSSFALHASDN  125 (226)
T ss_pred             CHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-C-C-----CCCCEEEEEecChhhccCC
Confidence            44445555544 67999999999999999863         13467888653 3 2     2678999998653   234


Q ss_pred             cHHHHHHHHhcccCCe
Q 031568           79 YCNYHERLMKLLKVGG   94 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG   94 (157)
                      ....++++.+.|+|..
T Consensus       126 ~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        126 IEKVIAEFTRVSRKQV  141 (226)
T ss_pred             HHHHHHHHHHHhcCce
Confidence            5778999999999954

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.78  E-value=2.7e-05  Score=58.08  Aligned_cols=84  Identities=14%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |.-...++.++|+.+++.+|. |+.++.+++       .+||+++.||..+-+         +. +|++++-.-.     
T Consensus       112 G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~---------P~-~D~~~l~~vLh~~~d  173 (241)
T PF00891_consen  112 GHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL---------PV-ADVYLLRHVLHDWSD  173 (241)
T ss_dssp             SHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC---------SS-ESEEEEESSGGGS-H
T ss_pred             hHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhh---------cc-ccceeeehhhhhcch
Confidence            434455777899999999999 899999888       569999999998432         34 9999985422     


Q ss_pred             cccHHHHHHHHhcccCC--eEEEEecccC
Q 031568           77 DNYCNYHERLMKLLKVG--GIAVYDNTLW  103 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~g--G~iv~~~~~~  103 (157)
                      ..-..+++.+.+.|+||  |.|++.+.+.
T Consensus       174 ~~~~~iL~~~~~al~pg~~g~llI~e~~~  202 (241)
T PF00891_consen  174 EDCVKILRNAAAALKPGKDGRLLIIEMVL  202 (241)
T ss_dssp             HHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence            23456789999999998  8888766554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.78  E-value=0.00015  Score=53.31  Aligned_cols=87  Identities=17%  Similarity=0.178  Sum_probs=71.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCc-eeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS-FDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~-fD~I~iD~~~~~~~   80 (157)
                      |+.-.-+|-.+|+.+++-+|...+.+...++-.++.|++ +++++++.+.++-++        .+ ||+|.+-+-. ...
T Consensus        79 GfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~--------~~~~D~vtsRAva-~L~  148 (215)
T COG0357          79 GFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE--------KKQYDVVTSRAVA-SLN  148 (215)
T ss_pred             CCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc--------cccCcEEEeehcc-chH
Confidence            455556676789999999999999999999999999996 899999999887432        23 9999987643 457


Q ss_pred             HHHHHHHhcccCCeEEEE
Q 031568           81 NYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~   98 (157)
                      .+.+.+.+++++||.+++
T Consensus       149 ~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         149 VLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             HHHHHHHHhcccCCcchh
Confidence            788999999999888764

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.75  E-value=0.00011  Score=63.00  Aligned_cols=57  Identities=14%  Similarity=0.213  Sum_probs=48.0

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      ..+++++|+++.+++.|++|+..+|+.+++++.++|+.+.....     ..++||+|+.+++
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPP  312 (702)
T PRK11783        256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPP  312 (702)
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCC
Confidence            34799999999999999999999999888999999998753221     1257999999985

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.75  E-value=0.00035  Score=54.42  Aligned_cols=84  Identities=13%  Similarity=0.002  Sum_probs=54.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-   76 (157)
                      |.-+..++.  .+.+|+++|+++.+++.|+++++..+.    ..++++..+|+.+.          .++||+|++-... 
T Consensus       156 G~~a~~la~--~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~~~fD~Vv~~~vL~  223 (315)
T PLN02585        156 GSLAIPLAL--EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------SGKYDTVTCLDVLI  223 (315)
T ss_pred             CHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------CCCcCEEEEcCEEE
Confidence            333444443  367999999999999999999877532    23688898887542          4679999864221 


Q ss_pred             ----cccHHHHHHHHhcccCCeEEEE
Q 031568           77 ----DNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        77 ----~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                          ......++.+. .+.++|+++.
T Consensus       224 H~p~~~~~~ll~~l~-~l~~g~liIs  248 (315)
T PLN02585        224 HYPQDKADGMIAHLA-SLAEKRLIIS  248 (315)
T ss_pred             ecCHHHHHHHHHHHH-hhcCCEEEEE
Confidence                11223444444 4567777765

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=97.73  E-value=4.4e-05  Score=57.36  Aligned_cols=97  Identities=18%  Similarity=0.213  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHcCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-cccHHHHHHHHhcccCCeEEEEecccC
Q 031568           26 TYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        26 ~~~~a~~~~~~~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ..+..++|+.+.|+ .++++++.|...+.++..     +.+++-++.+|++. ......++.+.+.|.|||+|++|+...
T Consensus       141 s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~-----p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  141 SLEEVRENFARYGLLDDNVRFVKGWFPDTLPDA-----PIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             HHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC------TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             CHHHHHHHHHHcCCCcccEEEECCcchhhhccC-----CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence            45566777777775 468999999999998865     25689999999863 223456888889999999999998654


Q ss_pred             CccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecC
Q 031568          104 GGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG  147 (157)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~  147 (157)
                      .|                ..+++.+|.+.-    ++...+.++.
T Consensus       216 ~g----------------cr~AvdeF~~~~----gi~~~l~~id  239 (248)
T PF05711_consen  216 PG----------------CRKAVDEFRAEH----GITDPLHPID  239 (248)
T ss_dssp             HH----------------HHHHHHHHHHHT----T--S--EE-S
T ss_pred             hH----------------HHHHHHHHHHHc----CCCCccEEec
Confidence            22                456777775432    3344455653

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK06202 hypothetical protein; Provisional

Probab=97.71  E-value=0.00016  Score=53.69  Aligned_cols=87  Identities=10%  Similarity=0.064  Sum_probs=55.1

Q ss_pred             cccHHHHHh----hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568            2 HLPTKLFMT----GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         2 g~st~~l~~----~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      |..+..|+.    ..++.+|+++|+++++++.|+++....    ++++..+++... +.      .+++||+|++.....
T Consensus        72 G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~~------~~~~fD~V~~~~~lh  140 (232)
T PRK06202         72 GDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-VA------EGERFDVVTSNHFLH  140 (232)
T ss_pred             CHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-cc------cCCCccEEEECCeee
Confidence            444445553    235679999999999999999876543    345555554332 21      156899999875321


Q ss_pred             -----ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 -----NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 -----~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                           .....++.+.+.++  |.+++.+.
T Consensus       141 h~~d~~~~~~l~~~~r~~~--~~~~i~dl  167 (232)
T PRK06202        141 HLDDAEVVRLLADSAALAR--RLVLHNDL  167 (232)
T ss_pred             cCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence                 13457888888887  44444443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.66  E-value=0.00046  Score=53.13  Aligned_cols=90  Identities=21%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             HhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccHHHHHH
Q 031568            9 MTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHER   85 (157)
Q Consensus         9 ~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~~~~~~   85 (157)
                      ++......|+++|.++....+.+-.-+-.|...++... ....+.++.       .+.||.||+-+   ..+.....+..
T Consensus       133 M~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~-------~~~FDtVF~MGVLYHrr~Pl~~L~~  204 (315)
T PF08003_consen  133 MLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN-------LGAFDTVFSMGVLYHRRSPLDHLKQ  204 (315)
T ss_pred             HhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc-------cCCcCEEEEeeehhccCCHHHHHHH
Confidence            33445678999999999888765544444544333333 344455553       36799999876   34556778999


Q ss_pred             HHhcccCCeEEEEecccCCcc
Q 031568           86 LMKLLKVGGIAVYDNTLWGGT  106 (157)
Q Consensus        86 ~~~~L~~gG~iv~~~~~~~~~  106 (157)
                      +...|++||.+|.+.....|.
T Consensus       205 Lk~~L~~gGeLvLETlvi~g~  225 (315)
T PF08003_consen  205 LKDSLRPGGELVLETLVIDGD  225 (315)
T ss_pred             HHHhhCCCCEEEEEEeeecCC
Confidence            999999999999987765543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.65  E-value=6.3e-05  Score=54.01  Aligned_cols=79  Identities=8%  Similarity=0.085  Sum_probs=61.3

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---C--CcccHHHHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---D--KDNYCNYHERLM   87 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~--~~~~~~~~~~~~   87 (157)
                      ..-+|++||.+|..++.|.+|++..|.. +++++.||+.++-         -+.-|.|++..   .  .......+..++
T Consensus        53 ~A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~---------fe~ADvvicEmlDTaLi~E~qVpV~n~vl  122 (252)
T COG4076          53 AAERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYD---------FENADVVICEMLDTALIEEKQVPVINAVL  122 (252)
T ss_pred             hhceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccccccc---------ccccceeHHHHhhHHhhcccccHHHHHHH
Confidence            4789999999999999999999888875 8999999998862         24578887532   1  122345678888


Q ss_pred             hcccCCeEEEEecc
Q 031568           88 KLLKVGGIAVYDNT  101 (157)
Q Consensus        88 ~~L~~gG~iv~~~~  101 (157)
                      +.|+..+.++-..+
T Consensus       123 eFLr~d~tiiPq~v  136 (252)
T COG4076         123 EFLRYDPTIIPQEV  136 (252)
T ss_pred             HHhhcCCccccHHH
Confidence            89999999886443

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.61  E-value=0.00063  Score=52.65  Aligned_cols=67  Identities=12%  Similarity=0.150  Sum_probs=51.2

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |..++.+.++++|+++|.||.+++.|++.++..  .+++++++++..++...+.+.  ..+++|.|++|-+
T Consensus        35 S~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~--~~~~vDgIl~DLG  101 (305)
T TIGR00006        35 SKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL--LVTKIDGILVDLG  101 (305)
T ss_pred             HHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc--CCCcccEEEEecc
Confidence            344555556699999999999999999988765  368999999999876554310  1357999999854

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.59  E-value=0.00066  Score=51.92  Aligned_cols=87  Identities=20%  Similarity=0.221  Sum_probs=67.4

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc------cHHHHHHHHh
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------YCNYHERLMK   88 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~------~~~~~~~~~~   88 (157)
                      .+|...|.+|..++..++.+++.|+.+-++|.++|+.+.-. +.+   .....+++++.+-.+-      ....+.-+..
T Consensus       162 ~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~-l~~---l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~  237 (311)
T PF12147_consen  162 DSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS-LAA---LDPAPTLAIVSGLYELFPDNDLVRRSLAGLAR  237 (311)
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH-hhc---cCCCCCEEEEecchhhCCcHHHHHHHHHHHHH
Confidence            79999999999999999999999998777999999988532 211   1456899998763221      2334666678


Q ss_pred             cccCCeEEEEecccCCc
Q 031568           89 LLKVGGIAVYDNTLWGG  105 (157)
Q Consensus        89 ~L~~gG~iv~~~~~~~~  105 (157)
                      .+.|||++|+-+--|+.
T Consensus       238 al~pgG~lIyTgQPwHP  254 (311)
T PF12147_consen  238 ALEPGGYLIYTGQPWHP  254 (311)
T ss_pred             HhCCCcEEEEcCCCCCc
Confidence            99999999998766654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.57  E-value=0.00076  Score=47.61  Aligned_cols=90  Identities=20%  Similarity=0.163  Sum_probs=65.9

Q ss_pred             CcccHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--
Q 031568            1 MHLPTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--   77 (157)
Q Consensus         1 ~g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--   77 (157)
                      +|+-|-.+++ ..+...++++|.+++.+.+..+..      +.+++++||+.+.-..+.+  -.+..||.|++.-+..  
T Consensus        59 TGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e--~~gq~~D~viS~lPll~~  130 (194)
T COG3963          59 TGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGE--HKGQFFDSVISGLPLLNF  130 (194)
T ss_pred             ccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhh--cCCCeeeeEEeccccccC
Confidence            3666666555 557899999999999998887744      3466899999876433321  1246799999865432  


Q ss_pred             ---ccHHHHHHHHhcccCCeEEEE
Q 031568           78 ---NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 ---~~~~~~~~~~~~L~~gG~iv~   98 (157)
                         .-.++++.+...|..||.++-
T Consensus       131 P~~~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963         131 PMHRRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             cHHHHHHHHHHHHHhcCCCCeEEE
Confidence               335789999999999999885

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.57  E-value=0.00073  Score=53.16  Aligned_cols=85  Identities=13%  Similarity=0.247  Sum_probs=67.9

Q ss_pred             HHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHH
Q 031568            6 KLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER   85 (157)
Q Consensus         6 ~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~   85 (157)
                      +..+...+..+++.=|++|++++++++|++.+... ...+++.|+-..+.+.      ...||.|=+|+-- ....+++.
T Consensus        68 IRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~------~~~fd~IDiDPFG-SPaPFlDa  139 (380)
T COG1867          68 IRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL------HRAFDVIDIDPFG-SPAPFLDA  139 (380)
T ss_pred             hhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc------CCCccEEecCCCC-CCchHHHH
Confidence            33444445559999999999999999999998443 5667779999888754      4789999999843 34678999


Q ss_pred             HHhcccCCeEEEE
Q 031568           86 LMKLLKVGGIAVY   98 (157)
Q Consensus        86 ~~~~L~~gG~iv~   98 (157)
                      +.+.++.||++.+
T Consensus       140 A~~s~~~~G~l~v  152 (380)
T COG1867         140 ALRSVRRGGLLCV  152 (380)
T ss_pred             HHHHhhcCCEEEE
Confidence            9999999999976

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.56  E-value=0.00057  Score=52.73  Aligned_cols=64  Identities=16%  Similarity=0.134  Sum_probs=49.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      |.-|..++..  +.+|+++|+|+.+++.++++++..+..++++++++|+.+.-         ..+||.|+.+.+.
T Consensus        48 G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~---------~~~~d~VvaNlPY  111 (294)
T PTZ00338         48 GNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE---------FPYFDVCVANVPY  111 (294)
T ss_pred             HHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc---------ccccCEEEecCCc
Confidence            3334444443  57899999999999999999988776668999999998742         2468999988653

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.50  E-value=0.0011  Score=47.47  Aligned_cols=90  Identities=17%  Similarity=0.158  Sum_probs=67.7

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----   76 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----   76 (157)
                      |+-+..|++. .|++...+.|+||++++..++.++.++.  +++.+.+|....+.        .++.|+++.+++.    
T Consensus        55 GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VDvLvfNPPYVpt~  124 (209)
T KOG3191|consen   55 GVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVDVLVFNPPYVPTS  124 (209)
T ss_pred             chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCccEEEECCCcCcCC
Confidence            5555666663 3899999999999999999999988876  58899999988775        4789999987631    


Q ss_pred             --cc------------------cHHHHHHHHhcccCCeEEEEecc
Q 031568           77 --DN------------------YCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 --~~------------------~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                        +.                  ...++.++-.+|+|.|++..-.+
T Consensus       125 ~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~  169 (209)
T KOG3191|consen  125 DEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL  169 (209)
T ss_pred             cccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence              00                  12345555578899999876443

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.46  E-value=0.0003  Score=57.34  Aligned_cols=84  Identities=14%  Similarity=0.163  Sum_probs=62.8

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee-EEEEcCCCcccHHHH
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD-YAFVDADKDNYCNYH   83 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD-~I~iD~~~~~~~~~~   83 (157)
                      |.-++.+.+..+|++||++|+.++-|++|++.+|++ +.+|+.|-+.+.++.+...  .-++=+ ++++|++.......+
T Consensus       396 ~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~--~~~~~~~v~iiDPpR~Glh~~~  472 (534)
T KOG2187|consen  396 TIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTP--CCDSETLVAIIDPPRKGLHMKV  472 (534)
T ss_pred             ceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhccc--CCCCCceEEEECCCcccccHHH
Confidence            333555557899999999999999999999999997 8999999999988877521  112445 778899877665555


Q ss_pred             HHHHhccc
Q 031568           84 ERLMKLLK   91 (157)
Q Consensus        84 ~~~~~~L~   91 (157)
                      -.+++..+
T Consensus       473 ik~l~~~~  480 (534)
T KOG2187|consen  473 IKALRAYK  480 (534)
T ss_pred             HHHHHhcc
Confidence            44444444

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.45  E-value=0.00027  Score=48.75  Aligned_cols=74  Identities=18%  Similarity=0.224  Sum_probs=55.2

Q ss_pred             HhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----ccHHH
Q 031568            9 MTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----NYCNY   82 (157)
Q Consensus         9 ~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----~~~~~   82 (157)
                      +..+ ....|+++|++|++++++++|++++.+  ++++.++|..+....       .+.||-+++|++..     .--++
T Consensus        65 a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~-------~g~fDtaviNppFGTk~~~aDm~f  135 (185)
T KOG3420|consen   65 AFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELK-------GGIFDTAVINPPFGTKKKGADMEF  135 (185)
T ss_pred             HhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhcc-------CCeEeeEEecCCCCcccccccHHH
Confidence            3444 467899999999999999999999987  468999999876542       57899999998521     12345


Q ss_pred             HHHHHhccc
Q 031568           83 HERLMKLLK   91 (157)
Q Consensus        83 ~~~~~~~L~   91 (157)
                      ++.++++.+
T Consensus       136 v~~al~~~~  144 (185)
T KOG3420|consen  136 VSAALKVAS  144 (185)
T ss_pred             HHHHHHHHH
Confidence            555555433

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.45  E-value=0.0016  Score=47.84  Aligned_cols=81  Identities=19%  Similarity=0.149  Sum_probs=65.0

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-CcccHHHH
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-KDNYCNYH   83 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-~~~~~~~~   83 (157)
                      +.+|...++...+++.|+++..++.|.+|+.++++.+++++..+|....+.       .+..+|.|.+-+- -.-..+++
T Consensus        31 p~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-------~~d~~d~ivIAGMGG~lI~~IL  103 (226)
T COG2384          31 PIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-------LEDEIDVIVIAGMGGTLIREIL  103 (226)
T ss_pred             HHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-------ccCCcCEEEEeCCcHHHHHHHH
Confidence            455666778999999999999999999999999999999999999977654       2457999998763 22345677


Q ss_pred             HHHHhcccC
Q 031568           84 ERLMKLLKV   92 (157)
Q Consensus        84 ~~~~~~L~~   92 (157)
                      ++..+.|+.
T Consensus       104 ee~~~~l~~  112 (226)
T COG2384         104 EEGKEKLKG  112 (226)
T ss_pred             HHhhhhhcC
Confidence            777766664

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.42  E-value=0.0004  Score=56.40  Aligned_cols=93  Identities=15%  Similarity=0.136  Sum_probs=74.6

Q ss_pred             cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      ||=++..+...| -.+|++-|.++..++..++|++.++.++.++..++|+....-.-.   .....||+|=+|+-- ...
T Consensus       121 GlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~---~~~~~FDvIDLDPyG-s~s  196 (525)
T KOG1253|consen  121 GLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP---MVAKFFDVIDLDPYG-SPS  196 (525)
T ss_pred             hHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc---ccccccceEecCCCC-Ccc
Confidence            555666676555 458999999999999999999999999999999999987654321   113679999999843 235


Q ss_pred             HHHHHHHhcccCCeEEEE
Q 031568           81 NYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~   98 (157)
                      .+++.+.+.++.||++.+
T Consensus       197 ~FLDsAvqav~~gGLL~v  214 (525)
T KOG1253|consen  197 PFLDSAVQAVRDGGLLCV  214 (525)
T ss_pred             HHHHHHHHHhhcCCEEEE
Confidence            689999999999999987

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.37  E-value=0.00032  Score=51.02  Aligned_cols=80  Identities=23%  Similarity=0.289  Sum_probs=49.1

Q ss_pred             CcEEEEEeCChhHHHHHHHHH--------------HH-----cC--------CCCcEEEEEccHHHHHHHHhhcCCCCCc
Q 031568           14 ILQITAIDVNRETYEIGLPII--------------KK-----AG--------VDHKINFIESEALSVLDQLLKYSENEGS   66 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~--------------~~-----~~--------~~~~i~~~~~d~~~~l~~~~~~~~~~~~   66 (157)
                      ..+|++.|+|+.+++.|++-.              ++     .+        +.++|+|...|..+..+       ..+.
T Consensus        64 ~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~-------~~~~  136 (196)
T PF01739_consen   64 DFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDP-------PFGR  136 (196)
T ss_dssp             SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S-------------
T ss_pred             ceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCc-------ccCC
Confidence            469999999999999995421              11     11        12358888888887111       2568


Q ss_pred             eeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEec
Q 031568           67 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        67 fD~I~iD~~-----~~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ||+||+-.-     ...-..+++.+.+.|+|||.++...
T Consensus       137 fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  137 FDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             ccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence            999998542     2223567888889999999999853

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=97.36  E-value=0.0013  Score=44.04  Aligned_cols=89  Identities=19%  Similarity=0.245  Sum_probs=63.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+|+... .+|++++.+++..+.+++    .|...-+.....|..+.+..+.    ....+|.||-...   ...
T Consensus         3 G~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g---~~~   70 (130)
T PF00107_consen    3 GLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELT----GGRGVDVVIDCVG---SGD   70 (130)
T ss_dssp             HHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHT----TTSSEEEEEESSS---SHH
T ss_pred             HHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccccccccccccccccccccc----ccccceEEEEecC---cHH
Confidence            677778888765 999999999999877765    4533223333444666666553    2347999986544   366


Q ss_pred             HHHHHHhcccCCeEEEEeccc
Q 031568           82 YHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      .++.+.++++++|.+++-...
T Consensus        71 ~~~~~~~~l~~~G~~v~vg~~   91 (130)
T PF00107_consen   71 TLQEAIKLLRPGGRIVVVGVY   91 (130)
T ss_dssp             HHHHHHHHEEEEEEEEEESST
T ss_pred             HHHHHHHHhccCCEEEEEEcc
Confidence            889999999999999985543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.36  E-value=0.00035  Score=56.62  Aligned_cols=97  Identities=15%  Similarity=0.172  Sum_probs=72.1

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc------
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------   78 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~------   78 (157)
                      +..+....|..++++||++|++++.|++++....- .|..++..|..+.+.+..++-..+..||++++|.+...      
T Consensus       310 ~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~  388 (482)
T KOG2352|consen  310 PSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQC  388 (482)
T ss_pred             ccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcC
Confidence            33445567999999999999999999999976543 37888999999998877542112457999999864221      


Q ss_pred             ------cHHHHHHHHhcccCCeEEEEeccc
Q 031568           79 ------YCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        79 ------~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                            -..++..+...|.|.|+++++-+-
T Consensus       389 pp~~fva~~~l~~~k~~l~p~g~f~inlv~  418 (482)
T KOG2352|consen  389 PPPAFVAQVALQPVKMILPPRGMFIINLVT  418 (482)
T ss_pred             CchHHHHHHHHHHHhhccCccceEEEEEec
Confidence                  124556667899999999886543

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.30  E-value=0.00061  Score=53.18  Aligned_cols=86  Identities=19%  Similarity=0.275  Sum_probs=62.8

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--CcccHHHHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHER   85 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~~~~~~~   85 (157)
                      +++.....+|++||.+.-+ +.|++.+..+++++.|+++.|.+.+.  .+     +.++.|.|+..=-  .--+...++.
T Consensus        77 F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~L-----P~eKVDiIvSEWMGy~Ll~EsMlds  148 (346)
T KOG1499|consen   77 FAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--EL-----PVEKVDIIVSEWMGYFLLYESMLDS  148 (346)
T ss_pred             HHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ec-----CccceeEEeehhhhHHHHHhhhhhh
Confidence            4444468899999997655 99999999999998999999999887  34     2478999987521  1112223333


Q ss_pred             HH----hcccCCeEEEEecc
Q 031568           86 LM----KLLKVGGIAVYDNT  101 (157)
Q Consensus        86 ~~----~~L~~gG~iv~~~~  101 (157)
                      ++    +.|+|||++.-+.+
T Consensus       149 Vl~ARdkwL~~~G~i~P~~a  168 (346)
T KOG1499|consen  149 VLYARDKWLKEGGLIYPDRA  168 (346)
T ss_pred             hhhhhhhccCCCceEccccc
Confidence            32    69999999986644

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=97.30  E-value=0.00075  Score=45.51  Aligned_cols=51  Identities=24%  Similarity=0.301  Sum_probs=39.0

Q ss_pred             cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEE
Q 031568           42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      +++++.||+.+.++++      ...||.||.|+-.+      ...+++..+.+++++||++..
T Consensus        32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T   88 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT   88 (124)
T ss_dssp             EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            3678999999999987      47899999997322      246899999999999999986

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.25  E-value=0.00038  Score=51.25  Aligned_cols=85  Identities=21%  Similarity=0.215  Sum_probs=61.7

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc-------
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-------   73 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD-------   73 (157)
                      .|+|+..|..  ++-..+++|++|.|+++|.+  ++..    -.++.+|.-+-+|.      +++.||-+++-       
T Consensus        61 sGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~--~e~e----gdlil~DMG~Glpf------rpGtFDg~ISISAvQWLc  126 (270)
T KOG1541|consen   61 SGLSGSVLSD--SGHQWIGVDISPSMLEQAVE--RELE----GDLILCDMGEGLPF------RPGTFDGVISISAVQWLC  126 (270)
T ss_pred             CCcchheecc--CCceEEeecCCHHHHHHHHH--hhhh----cCeeeeecCCCCCC------CCCccceEEEeeeeeeec
Confidence            3778877765  46788999999999999987  3221    35788998887764      37899999852       


Q ss_pred             -CC------CcccHHHHHHHHhcccCCeEEEEe
Q 031568           74 -AD------KDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        74 -~~------~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                       ++      ++....+|..+...|++|+.-|+.
T Consensus       127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             ccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence             22      223445677788888888888763

>PRK13699 putative methylase; Provisional

Probab=97.24  E-value=0.0006  Score=50.70  Aligned_cols=51  Identities=16%  Similarity=0.264  Sum_probs=40.3

Q ss_pred             EEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------------------ccHHHHHHHHhcccCCeEEEE
Q 031568           43 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        43 i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------------------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      +++++||+.+.++.+.     ++++|+|+.|++-.                  .+..++.++.+.|+|||.+++
T Consensus         2 ~~l~~gD~le~l~~lp-----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARFP-----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhCC-----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3689999999998874     78999999997531                  123566778899999999875

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.24  E-value=0.0029  Score=48.62  Aligned_cols=70  Identities=11%  Similarity=0.185  Sum_probs=53.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |-|-.+|-+..+.++++++|.||.+++.|++.+..++  +|+.+++++..+....+...  ..+++|-|++|-+
T Consensus        36 GHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~~vDGiL~DLG  105 (314)
T COG0275          36 GHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIGKVDGILLDLG  105 (314)
T ss_pred             HhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCCceeEEEEecc
Confidence            3455555555457889999999999999999998765  69999999988766554321  1358999999854

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.22  E-value=0.00073  Score=48.77  Aligned_cols=67  Identities=15%  Similarity=0.267  Sum_probs=46.3

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cccHHHHHHHHhc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKL   89 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~~~~~~~~~~~~   89 (157)
                      .+.+++++|+++++++.+++        .+++++.+|+.+.++.+     .+++||+|++....   ......++++.+.
T Consensus        35 ~~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~-----~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~  101 (194)
T TIGR02081        35 KQVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAF-----PDKSFDYVILSQTLQATRNPEEILDEMLRV  101 (194)
T ss_pred             cCCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhccccc-----CCCCcCEEEEhhHhHcCcCHHHHHHHHHHh
Confidence            46688999999999988864        14678889987644322     25689999987532   2345566666665


Q ss_pred             ccC
Q 031568           90 LKV   92 (157)
Q Consensus        90 L~~   92 (157)
                      +++
T Consensus       102 ~~~  104 (194)
T TIGR02081       102 GRH  104 (194)
T ss_pred             CCe
Confidence            553

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.21  E-value=0.0029  Score=47.84  Aligned_cols=60  Identities=18%  Similarity=0.139  Sum_probs=45.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |.-|..++..  ..+|+++|+++.+++.+++++..   .++++++++|+.+. +        ...||.|+.+.+
T Consensus        41 G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~-~--------~~~~d~Vv~NlP  100 (258)
T PRK14896         41 GALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKV-D--------LPEFNKVVSNLP  100 (258)
T ss_pred             CHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccC-C--------chhceEEEEcCC
Confidence            4445555554  56999999999999999998865   24899999999864 1        235899998865

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.19  E-value=0.0033  Score=53.68  Aligned_cols=51  Identities=22%  Similarity=0.214  Sum_probs=41.4

Q ss_pred             cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEE
Q 031568           42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      +++++.||+.+.++++      ...+|.+|.|+-.+      ...++|..+.++++|||+++.
T Consensus       148 ~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t  204 (662)
T PRK01747        148 TLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT  204 (662)
T ss_pred             EEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence            3568899999999876      35699999997322      246789999999999999985

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.15  E-value=0.0008  Score=52.12  Aligned_cols=67  Identities=18%  Similarity=0.155  Sum_probs=45.1

Q ss_pred             HHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568            7 LFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus         7 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      .++.+.|+++++++|.||++++.|++.++..  .+|+.+++++..+....+... ....++|-|++|-+.
T Consensus        37 aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~-~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   37 AILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKEL-NGINKVDGILFDLGV  103 (310)
T ss_dssp             HHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHT-TTTS-EEEEEEE-S-
T ss_pred             HHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHc-cCCCccCEEEEcccc
Confidence            3444556799999999999999999987655  569999999988765544321 013589999999654

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.14  E-value=0.00042  Score=51.54  Aligned_cols=55  Identities=24%  Similarity=0.348  Sum_probs=36.4

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcC--CC------CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAG--VD------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~--~~------~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      +++|+++|.||-...+.+.-++++.  ..      .|++++++|+.++++.      +..+||+|++|+
T Consensus        97 G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~------~~~s~DVVY~DP  159 (234)
T PF04445_consen   97 GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ------PDNSFDVVYFDP  159 (234)
T ss_dssp             T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC------HSS--SEEEE--
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh------cCCCCCEEEECC
Confidence            7899999999999998887665531  11      3799999999999872      167899999998

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.14  E-value=0.0016  Score=50.90  Aligned_cols=82  Identities=13%  Similarity=0.178  Sum_probs=63.3

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----CcccHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNY   82 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~~~~~~~   82 (157)
                      +|+.....+|++||-+ +|++.||+.++.+.+.+||.++.|...++  ++      +++.|+|+..+-     .+...+.
T Consensus       194 FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~DviISEPMG~mL~NERMLEs  264 (517)
T KOG1500|consen  194 FAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKVDVIISEPMGYMLVNERMLES  264 (517)
T ss_pred             HHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc--cC------chhccEEEeccchhhhhhHHHHHH
Confidence            5555568899999986 68899999999999999999999999876  23      578999998762     1223334


Q ss_pred             HHHHHhcccCCeEEEE
Q 031568           83 HERLMKLLKVGGIAVY   98 (157)
Q Consensus        83 ~~~~~~~L~~gG~iv~   98 (157)
                      +-.+.+.|+|+|-...
T Consensus       265 Yl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  265 YLHARKWLKPNGKMFP  280 (517)
T ss_pred             HHHHHhhcCCCCcccC
Confidence            4456689999998753

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.13  E-value=0.00045  Score=51.41  Aligned_cols=78  Identities=13%  Similarity=0.138  Sum_probs=51.8

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--CcccHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~~~~~~~~~~~L~   91 (157)
                      -.+|+++|++++|++.|++.....-..-...+...+..+.+.       .+++.|+|.+--.  .-..+.+++.+.+.||
T Consensus        55 ~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g-------~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLR  127 (261)
T KOG3010|consen   55 YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG-------GEESVDLITAAQAVHWFDLERFYKEAYRVLR  127 (261)
T ss_pred             hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC-------CCcceeeehhhhhHHhhchHHHHHHHHHHcC
Confidence            568999999999999998854322111123344444444332       3678999987532  2246788999999999


Q ss_pred             CCe-EEEE
Q 031568           92 VGG-IAVY   98 (157)
Q Consensus        92 ~gG-~iv~   98 (157)
                      +.| ++.+
T Consensus       128 k~Gg~iav  135 (261)
T KOG3010|consen  128 KDGGLIAV  135 (261)
T ss_pred             CCCCEEEE
Confidence            987 6655

>PRK11524 putative methyltransferase; Provisional

Probab=97.11  E-value=0.0014  Score=50.36  Aligned_cols=53  Identities=23%  Similarity=0.360  Sum_probs=41.3

Q ss_pred             cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---c------------c----HHHHHHHHhcccCCeEEEEe
Q 031568           42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N------------Y----CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~------------~----~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..+++++|+.+.+..+.     +++||+||+|++-.   .            |    .+++..+.++|+|||.+++.
T Consensus         8 ~~~i~~gD~~~~l~~l~-----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIP-----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcc-----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            45789999999987763     67899999998521   0            1    35677888999999999863

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.09  E-value=0.00029  Score=54.12  Aligned_cols=81  Identities=23%  Similarity=0.325  Sum_probs=55.2

Q ss_pred             CcEEEEEeCChhHHHHHHHHH------------------HHc-----C-------CCCcEEEEEccHHHHHHHHhhcCCC
Q 031568           14 ILQITAIDVNRETYEIGLPII------------------KKA-----G-------VDHKINFIESEALSVLDQLLKYSEN   63 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~------------------~~~-----~-------~~~~i~~~~~d~~~~l~~~~~~~~~   63 (157)
                      ..+|+++|+|+.+++.|++.+                  ...     |       +..+|+|...|..+.-  .    ..
T Consensus       147 ~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~--~----~~  220 (287)
T PRK10611        147 RWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQ--W----AV  220 (287)
T ss_pred             CcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCC--C----cc
Confidence            468999999999999997752                  110     1       2245677777776521  1    01


Q ss_pred             CCceeEEEEcC-----CCcccHHHHHHHHhcccCCeEEEEec
Q 031568           64 EGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        64 ~~~fD~I~iD~-----~~~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      .+.||+||+-.     +...-..+++.+.+.|+|||++++..
T Consensus       221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            36799999732     22334667888899999999998853

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.08  E-value=0.0016  Score=44.41  Aligned_cols=50  Identities=12%  Similarity=0.100  Sum_probs=42.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   52 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   52 (157)
                      |..+.+++...+..+++++|.+|.+++.+++|++.+++. +++++...+.+
T Consensus        10 G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~   59 (143)
T TIGR01444        10 GDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD   59 (143)
T ss_pred             cHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence            667777777778889999999999999999999998875 68888777654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.08  E-value=0.0009  Score=49.83  Aligned_cols=89  Identities=18%  Similarity=0.200  Sum_probs=60.3

Q ss_pred             HHhhC--CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc-----CCCcccH
Q 031568            8 FMTGN--KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYC   80 (157)
Q Consensus         8 l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD-----~~~~~~~   80 (157)
                      +.+.+  ++.+|+++|.+|.+++..+++-....  .++.....|+..-  .+.. ....+++|+|.+-     -.+....
T Consensus        89 ll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~--~~~~-~~~~~svD~it~IFvLSAi~pek~~  163 (264)
T KOG2361|consen   89 LLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSP--SLKE-PPEEGSVDIITLIFVLSAIHPEKMQ  163 (264)
T ss_pred             hhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccch--hccC-CCCcCccceEEEEEEEeccChHHHH
Confidence            44444  45999999999999999999876543  3555555555331  1110 1135688887532     2344567


Q ss_pred             HHHHHHHhcccCCeEEEEecc
Q 031568           81 NYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ..++.+.++|+|||.|++.+-
T Consensus       164 ~a~~nl~~llKPGG~llfrDY  184 (264)
T KOG2361|consen  164 SVIKNLRTLLKPGGSLLFRDY  184 (264)
T ss_pred             HHHHHHHHHhCCCcEEEEeec
Confidence            788899999999999998654

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.01  E-value=0.0031  Score=45.55  Aligned_cols=77  Identities=13%  Similarity=0.234  Sum_probs=53.5

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cccHHHHHHHH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLM   87 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~~~~~~~~~~   87 (157)
                      ...+.+..++|++++.+..+.+    .    .+.++++|+.+-+..+.     +++||.|++....   ......+++++
T Consensus        33 ~~k~v~g~GvEid~~~v~~cv~----r----Gv~Viq~Dld~gL~~f~-----d~sFD~VIlsqtLQ~~~~P~~vL~Eml   99 (193)
T PF07021_consen   33 DEKQVDGYGVEIDPDNVAACVA----R----GVSVIQGDLDEGLADFP-----DQSFDYVILSQTLQAVRRPDEVLEEML   99 (193)
T ss_pred             HhcCCeEEEEecCHHHHHHHHH----c----CCCEEECCHHHhHhhCC-----CCCccEEehHhHHHhHhHHHHHHHHHH
Confidence            4468999999999998876644    2    36689999999988773     7899999986532   23345566655


Q ss_pred             hcccCCeEEEEecc
Q 031568           88 KLLKVGGIAVYDNT  101 (157)
Q Consensus        88 ~~L~~gG~iv~~~~  101 (157)
                      +. ...+++.+-|.
T Consensus       100 RV-gr~~IVsFPNF  112 (193)
T PF07021_consen  100 RV-GRRAIVSFPNF  112 (193)
T ss_pred             Hh-cCeEEEEecCh
Confidence            43 33455555554

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.95  E-value=0.0013  Score=50.79  Aligned_cols=65  Identities=11%  Similarity=0.281  Sum_probs=40.3

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHH-HHHHHHhhcCCCCCceeEEEEcCC
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEAL-SVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~-~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |.++..+-++++.|+|+..++.|++|++.+ ++.++|+++...-. .++..+..   ..+.||+.+++++
T Consensus       120 Lg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~~dftmCNPP  186 (299)
T PF05971_consen  120 LGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNERFDFTMCNPP  186 (299)
T ss_dssp             HHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-EEEEEE---
T ss_pred             HhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---ccceeeEEecCCc
Confidence            333334889999999999999999999999 99999999866432 22322211   2468999999875

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.89  E-value=0.0027  Score=49.05  Aligned_cols=81  Identities=23%  Similarity=0.345  Sum_probs=54.7

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-------------
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-------------   78 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-------------   78 (157)
                      +..+++++|+++.++.+|+-|+...+... ...+..+|....-...     ...+||+|+.+++...             
T Consensus        76 ~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~  150 (311)
T PF02384_consen   76 KEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDER  150 (311)
T ss_dssp             CCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCC
T ss_pred             ccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc-----cccccccccCCCCcccccccccccccccc
Confidence            68899999999999999999987766543 3568999987542210     1358999999874211             


Q ss_pred             -----------cHHHHHHHHhcccCCeEEEE
Q 031568           79 -----------YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 -----------~~~~~~~~~~~L~~gG~iv~   98 (157)
                                 ...++..+.+.|++||.+++
T Consensus       151 ~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~  181 (311)
T PF02384_consen  151 FKKYFPPKSNAEYAFIEHALSLLKPGGRAAI  181 (311)
T ss_dssp             CTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccccCCCccchhhhhHHHHHhhcccccceeE
Confidence                       12467888899999997544

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.82  E-value=0.0033  Score=47.90  Aligned_cols=79  Identities=22%  Similarity=0.342  Sum_probs=51.1

Q ss_pred             CcEEEEEeCChhHHHHHHHH------H-------------HHcC---------CCCcEEEEEccHHHHHHHHhhcCCCCC
Q 031568           14 ILQITAIDVNRETYEIGLPI------I-------------KKAG---------VDHKINFIESEALSVLDQLLKYSENEG   65 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~------~-------------~~~~---------~~~~i~~~~~d~~~~l~~~~~~~~~~~   65 (157)
                      ..+|++.|+|...++.|+.-      .             .+.+         +...|.|...|..+--+ .      .+
T Consensus       129 ~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~------~~  201 (268)
T COG1352         129 RVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-F------LG  201 (268)
T ss_pred             ceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-c------cC
Confidence            57999999999999999542      1             1110         01124444444443211 1      45


Q ss_pred             ceeEEEEcC-----CCcccHHHHHHHHhcccCCeEEEEe
Q 031568           66 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        66 ~fD~I~iD~-----~~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      .||+||+-.     +.+.-..+++.....|+|||++++.
T Consensus       202 ~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         202 KFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             CCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence            799999743     2233456788888999999999984

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.80  E-value=0.002  Score=47.81  Aligned_cols=75  Identities=19%  Similarity=0.285  Sum_probs=53.7

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccHHHHHHHHhcc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLL   90 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~~~~~~~~~~L   90 (157)
                      ..+++++|+|..|++.|.+   + |+-+  .+.++++..+++..     ..+.||+|..--   -......+|-.+..+|
T Consensus       147 a~~ltGvDiS~nMl~kA~e---K-g~YD--~L~~Aea~~Fl~~~-----~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L  215 (287)
T COG4976         147 ADRLTGVDISENMLAKAHE---K-GLYD--TLYVAEAVLFLEDL-----TQERFDLIVAADVLPYLGALEGLFAGAAGLL  215 (287)
T ss_pred             HhhccCCchhHHHHHHHHh---c-cchH--HHHHHHHHHHhhhc-----cCCcccchhhhhHHHhhcchhhHHHHHHHhc
Confidence            4578999999999998866   2 2222  45778888777643     257899997421   1223566777788999


Q ss_pred             cCCeEEEEe
Q 031568           91 KVGGIAVYD   99 (157)
Q Consensus        91 ~~gG~iv~~   99 (157)
                      +|||.+.+.
T Consensus       216 ~~gGlfaFS  224 (287)
T COG4976         216 APGGLFAFS  224 (287)
T ss_pred             CCCceEEEE
Confidence            999999884

>TIGR00755 ksgA dimethyladenosine transferase

Probab=96.76  E-value=0.011  Score=44.51  Aligned_cols=72  Identities=18%  Similarity=0.172  Sum_probs=48.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee---EEEEcCCCcc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD---YAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD---~I~iD~~~~~   78 (157)
                      |.-|..++...  .+++++|+|+.+++.+++++..   .++++++++|+.+.-.         .+||   +|+.+.+...
T Consensus        41 G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~---------~~~d~~~~vvsNlPy~i  106 (253)
T TIGR00755        41 GALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDL---------PDFPKQLKVVSNLPYNI  106 (253)
T ss_pred             CHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCCh---------hHcCCcceEEEcCChhh
Confidence            55566666654  4699999999999999987743   3589999999976421         2355   7777765333


Q ss_pred             cHHHHHHHH
Q 031568           79 YCNYHERLM   87 (157)
Q Consensus        79 ~~~~~~~~~   87 (157)
                      ...++..+.
T Consensus       107 ~~~il~~ll  115 (253)
T TIGR00755       107 SSPLIFKLL  115 (253)
T ss_pred             HHHHHHHHh
Confidence            334444444

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.72  E-value=0.007  Score=47.80  Aligned_cols=91  Identities=12%  Similarity=0.031  Sum_probs=62.4

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      +|+-+..+++..+..+|+.+|.+++.++.|++....    +.+..... +.......+.    ....+|.+|--..   .
T Consensus       180 IGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~g~D~vie~~G---~  248 (350)
T COG1063         180 IGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGRGADVVIEAVG---S  248 (350)
T ss_pred             HHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCCCCCEEEECCC---C
Confidence            366777777787889999999999999999884421    12222222 3333333331    1236999996655   5


Q ss_pred             HHHHHHHHhcccCCeEEEEeccc
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ...++.+.+.+++||.++.-.+.
T Consensus       249 ~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         249 PPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             HHHHHHHHHHhcCCCEEEEEecc
Confidence            66788999999999999985543

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=0.019  Score=40.47  Aligned_cols=120  Identities=13%  Similarity=0.073  Sum_probs=71.1

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHhhcCCCCCceeEEEE-cCC--
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSFDYAFV-DAD--   75 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~i-D~~--   75 (157)
                      +|++-+++|...|...|...|-+++.++-.++..-.+-.+  .++.+..-+....-.+.     ....||+|+. |+-  
T Consensus        41 t~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~-----eq~tFDiIlaADClFf  115 (201)
T KOG3201|consen   41 TGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ-----EQHTFDIILAADCLFF  115 (201)
T ss_pred             hhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH-----hhCcccEEEeccchhH
Confidence            4677777777779999999999999998888866554222  12222221111111111     1458999986 332  


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeee
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVA  145 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p  145 (157)
                      .+.-..+.+.+..+|+|.|.-++-.              |+     ..+.++.|..++.. -+|...+-|
T Consensus       116 dE~h~sLvdtIk~lL~p~g~Al~fs--------------PR-----Rg~sL~kF~de~~~-~gf~v~l~e  165 (201)
T KOG3201|consen  116 DEHHESLVDTIKSLLRPSGRALLFS--------------PR-----RGQSLQKFLDEVGT-VGFTVCLEE  165 (201)
T ss_pred             HHHHHHHHHHHHHHhCcccceeEec--------------Cc-----ccchHHHHHHHHHh-ceeEEEecc
Confidence            1223456677788999999844421              22     23457788776654 345554433

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=96.60  E-value=0.013  Score=44.63  Aligned_cols=73  Identities=18%  Similarity=0.146  Sum_probs=49.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.-|..++...  .+|+++|+|+++++.+++++..    ++++++++|+.++-  +.     .-.+|.|+.+.+......
T Consensus        54 G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~--~~-----~~~~~~vv~NlPY~iss~  120 (272)
T PRK00274         54 GALTEPLLERA--AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVD--LS-----ELQPLKVVANLPYNITTP  120 (272)
T ss_pred             cHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCC--HH-----HcCcceEEEeCCccchHH
Confidence            44555566553  4999999999999999987742    48999999998752  11     111588888765333234


Q ss_pred             HHHHHH
Q 031568           82 YHERLM   87 (157)
Q Consensus        82 ~~~~~~   87 (157)
                      ++..+.
T Consensus       121 ii~~~l  126 (272)
T PRK00274        121 LLFHLL  126 (272)
T ss_pred             HHHHHH
Confidence            444444

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.41  E-value=0.058  Score=42.68  Aligned_cols=88  Identities=20%  Similarity=0.224  Sum_probs=58.6

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHh--hc-CCCCCceeEEEEcCCCcc------------
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL--KY-SENEGSFDYAFVDADKDN------------   78 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~--~~-~~~~~~fD~I~iD~~~~~------------   78 (157)
                      .+.|++=|.++..+...+..+....- .++.+...|+..+ +...  .. +.....||.|++|.++..            
T Consensus       183 ~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~-p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~  260 (375)
T KOG2198|consen  183 RGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLF-PNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWK  260 (375)
T ss_pred             CCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceec-cccccccCchhhhhhcceeEEecccCCCcccccCchHhh
Confidence            56999999999999999888865543 3455555555432 2110  00 001357999999964321            


Q ss_pred             --------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 --------------YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 --------------~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                    -..++...+++|++||.+|+.++..
T Consensus       261 ~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  261 EGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             hhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence                          1245667778999999999998865

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=96.34  E-value=0.011  Score=45.07  Aligned_cols=62  Identities=10%  Similarity=0.074  Sum_probs=49.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |.=|..|..  .+.+|+++|+||.+++..++.++....+.+.++++||..+.         +...||.++.+.
T Consensus        70 GnLT~~lLe--~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~---------d~P~fd~cVsNl  131 (315)
T KOG0820|consen   70 GNLTVKLLE--AGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT---------DLPRFDGCVSNL  131 (315)
T ss_pred             CHHHHHHHH--hcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC---------CCcccceeeccC
Confidence            444545554  38899999999999999999998887778999999999864         125699998764

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.05  E-value=0.069  Score=39.55  Aligned_cols=81  Identities=17%  Similarity=0.058  Sum_probs=52.6

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH-HHHHhc
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH-ERLMKL   89 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~-~~~~~~   89 (157)
                      ..+.+.|++||.+|......-+-.++-   .||--+.+||..--.-.    .--+..|+||.|-..+.-.+++ ..+...
T Consensus        95 vg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~----~lv~~VDvI~~DVaQp~Qa~I~~~Na~~f  167 (229)
T PF01269_consen   95 VGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYR----MLVEMVDVIFQDVAQPDQARIAALNARHF  167 (229)
T ss_dssp             HTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGT----TTS--EEEEEEE-SSTTHHHHHHHHHHHH
T ss_pred             cCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhh----cccccccEEEecCCChHHHHHHHHHHHhh
Confidence            457999999999997765554433332   47888999997532110    1135899999998766555443 445579


Q ss_pred             ccCCeEEEE
Q 031568           90 LKVGGIAVY   98 (157)
Q Consensus        90 L~~gG~iv~   98 (157)
                      |++||.+++
T Consensus       168 Lk~gG~~~i  176 (229)
T PF01269_consen  168 LKPGGHLII  176 (229)
T ss_dssp             EEEEEEEEE
T ss_pred             ccCCcEEEE
Confidence            999998876

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.99  E-value=0.0059  Score=46.99  Aligned_cols=92  Identities=16%  Similarity=0.010  Sum_probs=63.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+=|+-+........|+++|.+|..++..|++++.+++.++..++.||-...-+        ....|.|.+.--++. ++
T Consensus       206 GYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~AdrVnLGLlPSs-e~  276 (351)
T KOG1227|consen  206 GYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRADRVNLGLLPSS-EQ  276 (351)
T ss_pred             ceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccchheeecccccc-cc
Confidence            555653333446889999999999999999999999998888899998876432        457888887643322 22


Q ss_pred             HHHHHHhcccC-Ce-EEEEe-ccc
Q 031568           82 YHERLMKLLKV-GG-IAVYD-NTL  102 (157)
Q Consensus        82 ~~~~~~~~L~~-gG-~iv~~-~~~  102 (157)
                      -+-.+.+.|+| || ++-+. |+.
T Consensus       277 ~W~~A~k~Lk~eggsilHIHenV~  300 (351)
T KOG1227|consen  277 GWPTAIKALKPEGGSILHIHENVK  300 (351)
T ss_pred             chHHHHHHhhhcCCcEEEEecccc
Confidence            23445566666 44 55553 443

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=95.92  E-value=0.068  Score=40.54  Aligned_cols=59  Identities=17%  Similarity=0.155  Sum_probs=44.1

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHH-HHhhcCCCCCceeEEEEcCC
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~-~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |..|+..  +.+|+++|+|+.+++..++.+.   ..++++++++|+.+.-- .+       .+++.|+.+-+
T Consensus        45 T~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l-------~~~~~vVaNlP  104 (259)
T COG0030          45 TEPLLER--AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL-------AQPYKVVANLP  104 (259)
T ss_pred             HHHHHhh--cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh-------cCCCEEEEcCC
Confidence            4445543  6789999999999999999775   33589999999998621 11       16889998765

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=95.92  E-value=0.058  Score=40.57  Aligned_cols=89  Identities=16%  Similarity=0.236  Sum_probs=51.0

Q ss_pred             cHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cccc
Q 031568            4 PTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNY   79 (157)
Q Consensus         4 st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~   79 (157)
                      |..+.+. .++.-+.+.+|.+|+-.+..++|++.   ..++++++.|..+.+..+..   +.++=-+|+||++   +..|
T Consensus        68 SP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~allP---P~~rRglVLIDPpYE~~~dy  141 (245)
T PF04378_consen   68 SPAIAARLLREQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALLP---PPERRGLVLIDPPYEQKDDY  141 (245)
T ss_dssp             HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-S----TTS-EEEEE-----STTHH
T ss_pred             CHHHHHHhCCccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhCC---CCCCCeEEEECCCCCCchHH
Confidence            4444444 35789999999999999999988865   35899999999998887641   2345679999985   3455


Q ss_pred             HHHHHHHHhccc--CCeEEEE
Q 031568           80 CNYHERLMKLLK--VGGIAVY   98 (157)
Q Consensus        80 ~~~~~~~~~~L~--~gG~iv~   98 (157)
                      ....+.+...++  +.|++++
T Consensus       142 ~~v~~~l~~a~kR~~~G~~~i  162 (245)
T PF04378_consen  142 QRVVDALAKALKRWPTGVYAI  162 (245)
T ss_dssp             HHHHHHHHHHHHH-TTSEEEE
T ss_pred             HHHHHHHHHHHHhcCCcEEEE
Confidence            555444443332  3555543

; PDB: 2OO3_A.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.91  E-value=0.32  Score=34.94  Aligned_cols=91  Identities=16%  Similarity=0.194  Sum_probs=51.0

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHH------------HHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   68 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~------------~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD   68 (157)
                      .|+.++..++. .+-+|+++|++++.++..++-            +++..-..+..+. .|..+.+.          ..|
T Consensus        11 vGl~~A~~lA~-~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~----------~ad   78 (185)
T PF03721_consen   11 VGLPLAAALAE-KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIK----------DAD   78 (185)
T ss_dssp             THHHHHHHHHH-TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHH----------H-S
T ss_pred             chHHHHHHHHh-CCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhh----------ccc
Confidence            36777776655 478999999999988877531            1111101233322 34443332          478


Q ss_pred             EEEEcCCC----------cccHHHHHHHHhcccCCeEEEEecccC
Q 031568           69 YAFVDADK----------DNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        69 ~I~iD~~~----------~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ++|+.-+.          .......+.+.+.++++.++|..-...
T Consensus        79 v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvp  123 (185)
T PF03721_consen   79 VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVP  123 (185)
T ss_dssp             EEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSS
T ss_pred             eEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEE
Confidence            88874321          123455677778999999998875554

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.84  E-value=0.079  Score=41.38  Aligned_cols=91  Identities=14%  Similarity=0.057  Sum_probs=59.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc-HHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      ||-|.+.|++....+|+.+|..+..++.|++ +   |...-...-+.+ ..++.....+. .....+|+.|-..   ...
T Consensus       182 Gl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~-~g~~~~d~~~dCs---G~~  253 (354)
T KOG0024|consen  182 GLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKA-LGKKQPDVTFDCS---GAE  253 (354)
T ss_pred             HHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhh-ccccCCCeEEEcc---Cch
Confidence            6778888889899999999999999999998 3   443111122222 22222222110 0124599988543   345


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 031568           81 NYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ..++.+...+++||.++.-.
T Consensus       254 ~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  254 VTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             HHHHHHHHHhccCCEEEEec
Confidence            67788889999999976643

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=95.81  E-value=0.025  Score=44.46  Aligned_cols=85  Identities=24%  Similarity=0.298  Sum_probs=54.6

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcC---------CCCcEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcCCC------
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAG---------VDHKINFIESEALSV-LDQLLKYSENEGSFDYAFVDADK------   76 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~---------~~~~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~~~------   76 (157)
                      .-..++++|++++.++.|++..+...         ..-...++.+|.... +.....  ....+||+|=+-...      
T Consensus        84 ~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~--~~~~~FDvVScQFalHY~Fes  161 (331)
T PF03291_consen   84 KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP--PRSRKFDVVSCQFALHYAFES  161 (331)
T ss_dssp             T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS--STTS-EEEEEEES-GGGGGSS
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc--ccCCCcceeehHHHHHHhcCC
Confidence            46799999999999999999883321         112467889987642 221110  012589999764321      


Q ss_pred             -cccHHHHHHHHhcccCCeEEEEe
Q 031568           77 -DNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        77 -~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                       .....++..+...|+|||+++.-
T Consensus       162 e~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  162 EEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEE
Confidence             22345788888999999999863

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=95.67  E-value=0.12  Score=37.80  Aligned_cols=81  Identities=16%  Similarity=0.219  Sum_probs=47.6

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHH-------cCC-CCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCCC--cccH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKK-------AGV-DHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADK--DNYC   80 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~-------~~~-~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~~--~~~~   80 (157)
                      +-.++++||+.+...+.|+++.+.       .|. ..+++++++|..+.  .....      ..-|+||++...  +...
T Consensus        65 ~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~------s~AdvVf~Nn~~F~~~l~  138 (205)
T PF08123_consen   65 GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW------SDADVVFVNNTCFDPDLN  138 (205)
T ss_dssp             --SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG------HC-SEEEE--TTT-HHHH
T ss_pred             CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh------cCCCEEEEeccccCHHHH
Confidence            455699999999999988765543       344 25789999998653  23221      357999998642  2233


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..+......|++|..||.-
T Consensus       139 ~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  139 LALAELLLELKPGARIIST  157 (205)
T ss_dssp             HHHHHHHTTS-TT-EEEES
T ss_pred             HHHHHHHhcCCCCCEEEEC
Confidence            3445556789999999874

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.64  E-value=0.064  Score=42.24  Aligned_cols=83  Identities=19%  Similarity=0.177  Sum_probs=55.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..+|++. +++|+++|.+++..+.|++.    |.+   .++.+.-.+..+..      .+.||+|+.-..    ..
T Consensus       179 Gh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l----GAd---~~i~~~~~~~~~~~------~~~~d~ii~tv~----~~  240 (339)
T COG1064         179 GHMAVQYAKAM-GAEVIAITRSEEKLELAKKL----GAD---HVINSSDSDALEAV------KEIADAIIDTVG----PA  240 (339)
T ss_pred             HHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh----CCc---EEEEcCCchhhHHh------HhhCcEEEECCC----hh
Confidence            33344456555 59999999999999888773    332   23433222333333      234999987654    44


Q ss_pred             HHHHHHhcccCCeEEEEeccc
Q 031568           82 YHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      .++...+.|+++|.++.-...
T Consensus       241 ~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         241 TLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             hHHHHHHHHhcCCEEEEECCC
Confidence            577888999999999986544

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=95.53  E-value=0.35  Score=35.20  Aligned_cols=116  Identities=17%  Similarity=0.257  Sum_probs=66.2

Q ss_pred             cHHHHHh----hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-----HHHHHhhcCCCCCceeEEE--E
Q 031568            4 PTKLFMT----GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-----VLDQLLKYSENEGSFDYAF--V   72 (157)
Q Consensus         4 st~~l~~----~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----~l~~~~~~~~~~~~fD~I~--i   72 (157)
                      |.+++|.    .....+|+++|+|-...+-+..   +   .++|.++.|+..+     .++.++      +.|--||  .
T Consensus        83 Sal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~---e---~p~i~f~egss~dpai~eqi~~~~------~~y~kIfvil  150 (237)
T COG3510          83 SALFFANMMISIGQPFKVLGVDIDIKPLDPAAR---E---VPDILFIEGSSTDPAIAEQIRRLK------NEYPKIFVIL  150 (237)
T ss_pred             hhhhhhHhHHhcCCCceEEEEecccCcCChhhh---c---CCCeEEEeCCCCCHHHHHHHHHHh------cCCCcEEEEe
Confidence            5555554    1134799999998655433221   1   3589999998654     223332      2333444  5


Q ss_pred             cCCCc--ccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 031568           73 DADKD--NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP  137 (157)
Q Consensus        73 D~~~~--~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (157)
                      |+++.  ....-++...++|.-|-.+++.+....+..   ....|.++-..-..++.+|+   +.+|
T Consensus       151 DsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp---~~~~p~~~g~gP~~AVe~yl---r~~p  211 (237)
T COG3510         151 DSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP---GPVLPWRFGGGPYEAVEAYL---REFP  211 (237)
T ss_pred             cCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC---CcccchhcCCChHHHHHHHH---HhCC
Confidence            66543  344456666789999999999776655542   22234433332344566664   5555

>PRK04148 hypothetical protein; Provisional

Probab=95.52  E-value=0.092  Score=35.86  Aligned_cols=63  Identities=11%  Similarity=0.104  Sum_probs=43.1

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL   89 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~   89 (157)
                      .+..|+++|++|..++.++++        .++++.+|..+--..+      -+.+|+|+.--+.+.....+-.+.+.
T Consensus        38 ~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~------y~~a~liysirpp~el~~~~~~la~~  100 (134)
T PRK04148         38 SGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI------YKNAKLIYSIRPPRDLQPFILELAKK  100 (134)
T ss_pred             CCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH------HhcCCEEEEeCCCHHHHHHHHHHHHH
Confidence            478999999999988877664        2578999988753333      35799999754444444434444443

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.34  E-value=0.094  Score=40.96  Aligned_cols=85  Identities=14%  Similarity=0.129  Sum_probs=52.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.....+|++++.+++..+.+++    .|...-+.....+..+...       ..+.+|+||-...   -..
T Consensus       182 G~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~-------~~g~~D~vid~~G---~~~  247 (343)
T PRK09880        182 GCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKA-------EKGYFDVSFEVSG---HPS  247 (343)
T ss_pred             HHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhc-------cCCCCCEEEECCC---CHH
Confidence            5555556666544479999999999887765    4543112211223322221       1245998874433   234


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.|++||.++.-.
T Consensus       248 ~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        248 SINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             HHHHHHHHhhcCCEEEEEc
Confidence            6778889999999998744

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.34  E-value=0.013  Score=48.30  Aligned_cols=79  Identities=15%  Similarity=0.141  Sum_probs=61.6

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc-----CCCcccHHHHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLM   87 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD-----~~~~~~~~~~~~~~   87 (157)
                      ...++++||.+|.++-..+. ....+++.+|+++.+|..++-+       +.++.|+++..     ++.+--++.++-+.
T Consensus       394 RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~a-------p~eq~DI~VSELLGSFGDNELSPECLDG~q  465 (649)
T KOG0822|consen  394 RKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNA-------PREQADIIVSELLGSFGDNELSPECLDGAQ  465 (649)
T ss_pred             CceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCC-------chhhccchHHHhhccccCccCCHHHHHHHH
Confidence            47789999999999988766 5455677899999999998853       13689999753     22334578999999


Q ss_pred             hcccCCeEEEEe
Q 031568           88 KLLKVGGIAVYD   99 (157)
Q Consensus        88 ~~L~~gG~iv~~   99 (157)
                      +.|+|.|+-|-.
T Consensus       466 ~fLkpdgIsIP~  477 (649)
T KOG0822|consen  466 KFLKPDGISIPS  477 (649)
T ss_pred             hhcCCCceEccc
Confidence            999999988753

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=95.24  E-value=0.087  Score=40.38  Aligned_cols=62  Identities=15%  Similarity=0.184  Sum_probs=52.2

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      +|..+-..+|..+|+++..++...+.+++.|+. +++.+.-|..+-+|+-.     ..+||.++.|++
T Consensus       169 ~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~-----~~kFDvfiTDPp  230 (354)
T COG1568         169 LALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL-----KRKFDVFITDPP  230 (354)
T ss_pred             HHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH-----HhhCCeeecCch
Confidence            344445779999999999999999999999996 79999999998887643     468999999975

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.11  E-value=0.068  Score=44.50  Aligned_cols=58  Identities=17%  Similarity=0.225  Sum_probs=39.9

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      ..++++|+++..+..++.++...+. ..+.+..+|.........+  ...++||+|+.+|+
T Consensus        64 ~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~--~~~~~fD~IIgNPP  121 (524)
T TIGR02987        64 LNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIE--SYLDLFDIVITNPP  121 (524)
T ss_pred             eeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccc--cccCcccEEEeCCC
Confidence            6789999999999999999988762 2356676665532110100  01357999999874

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=95.09  E-value=0.097  Score=41.14  Aligned_cols=80  Identities=13%  Similarity=0.186  Sum_probs=55.5

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc---C--CCcccHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD---A--DKDNYCNY   82 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD---~--~~~~~~~~   82 (157)
                      ++..+|.  |-+++.+...+-.++.+++ .|    |+.+.||.++-.|          +-|+||+-   +  .-.....+
T Consensus       195 ll~~fp~--ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P----------~~daI~mkWiLhdwtDedcvki  257 (342)
T KOG3178|consen  195 LLSKYPH--IKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP----------KGDAIWMKWILHDWTDEDCVKI  257 (342)
T ss_pred             HHHhCCC--CceeecCHHHHHhhhhhhc-CC----cceecccccccCC----------CcCeEEEEeecccCChHHHHHH
Confidence            3335454  7788888888888877775 44    7778888877543          34588862   1  12345678


Q ss_pred             HHHHHhcccCCeEEEE-ecccCC
Q 031568           83 HERLMKLLKVGGIAVY-DNTLWG  104 (157)
Q Consensus        83 ~~~~~~~L~~gG~iv~-~~~~~~  104 (157)
                      ++.|.+.|+|||.|++ +++..+
T Consensus       258 LknC~~sL~~~GkIiv~E~V~p~  280 (342)
T KOG3178|consen  258 LKNCKKSLPPGGKIIVVENVTPE  280 (342)
T ss_pred             HHHHHHhCCCCCEEEEEeccCCC
Confidence            9999999999988876 555544

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=95.09  E-value=0.035  Score=39.46  Aligned_cols=82  Identities=20%  Similarity=0.334  Sum_probs=45.8

Q ss_pred             HHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-----HHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568            5 TKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-----VLDQLLKYSENEGSFDYAFVDADKD-   77 (157)
Q Consensus         5 t~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----~l~~~~~~~~~~~~fD~I~iD~~~~-   77 (157)
                      |.+++... +.++|+++|+.+.           ... ..+..+.+|..+     .+.....  ...++||+|++|.... 
T Consensus        38 s~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~--~~~~~~dlv~~D~~~~~  103 (181)
T PF01728_consen   38 SQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLP--ESGEKFDLVLSDMAPNV  103 (181)
T ss_dssp             HHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHG--TTTCSESEEEE------
T ss_pred             eeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcc--ccccCcceeccccccCC
Confidence            34444433 6899999999987           111 245555666432     2222210  0125899999998311 


Q ss_pred             -------c------cHHHHHHHHhcccCCeEEEEec
Q 031568           78 -------N------YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 -------~------~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                             .      ....+..+.+.|+|||.+|+.-
T Consensus       104 ~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~  139 (181)
T PF01728_consen  104 SGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV  139 (181)
T ss_dssp             -SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence                   1      1223445567899999988864

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=95.03  E-value=0.094  Score=41.02  Aligned_cols=83  Identities=18%  Similarity=0.177  Sum_probs=54.4

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCC-C----cEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcCC----C---cccH
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVD-H----KINFIESEALSV-LDQLLKYSENEGSFDYAFVDAD----K---DNYC   80 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~-~----~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~~----~---~~~~   80 (157)
                      -+.++++|+.+-.+++|++..+..-.. .    .+.++.||.... +..+..  .++.+||+|=+--.    .   ....
T Consensus       140 I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e--~~dp~fDivScQF~~HYaFetee~ar  217 (389)
T KOG1975|consen  140 IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE--FKDPRFDIVSCQFAFHYAFETEESAR  217 (389)
T ss_pred             ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc--CCCCCcceeeeeeeEeeeeccHHHHH
Confidence            568899999999999999877654221 1    378999997653 222210  01344999954321    1   1223


Q ss_pred             HHHHHHHhcccCCeEEEE
Q 031568           81 NYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~   98 (157)
                      -.+..+.+.|+|||+++-
T Consensus       218 ~~l~Nva~~LkpGG~FIg  235 (389)
T KOG1975|consen  218 IALRNVAKCLKPGGVFIG  235 (389)
T ss_pred             HHHHHHHhhcCCCcEEEE
Confidence            456677789999999986

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.93  E-value=0.22  Score=38.92  Aligned_cols=86  Identities=19%  Similarity=0.264  Sum_probs=58.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEE--EEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      ||+.+.-+++...++|++||+|++..+.|++.    |..+-|+-  ....+.+.+.++-     ++.+|+-|=-.   ..
T Consensus       205 GLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmT-----dgGvDysfEc~---G~  272 (375)
T KOG0022|consen  205 GLAVAMGAKAAGASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMT-----DGGVDYSFECI---GN  272 (375)
T ss_pred             HHHHHHhHHhcCcccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHh-----cCCceEEEEec---CC
Confidence            56666666677899999999999999988773    43322221  1225777777764     67799988433   24


Q ss_pred             HHHHHHHHhcccCC-eEEEEe
Q 031568           80 CNYHERLMKLLKVG-GIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~   99 (157)
                      .+.+.+++...++| |.-++-
T Consensus       273 ~~~m~~al~s~h~GwG~sv~i  293 (375)
T KOG0022|consen  273 VSTMRAALESCHKGWGKSVVI  293 (375)
T ss_pred             HHHHHHHHHHhhcCCCeEEEE
Confidence            66777777777777 665543

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=94.88  E-value=0.11  Score=38.09  Aligned_cols=101  Identities=16%  Similarity=0.061  Sum_probs=66.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcC-----C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAFVDA-----D   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~-----~   75 (157)
                      |-=..++|+.+|..+-...|.++....-.+..+++.++..-..-+.-|+.+- -+-........++||.||+-.     +
T Consensus        37 GqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p  116 (204)
T PF06080_consen   37 GQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISP  116 (204)
T ss_pred             cHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcC
Confidence            3345678889999999999999999888889888887652212223333321 000000000145899999742     2


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ......+|+.+.++|++||.+++=..+
T Consensus       117 ~~~~~~lf~~a~~~L~~gG~L~~YGPF  143 (204)
T PF06080_consen  117 WSAVEGLFAGAARLLKPGGLLFLYGPF  143 (204)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence            334567899999999999999875444

The function of this family is unknown.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=94.76  E-value=0.29  Score=38.63  Aligned_cols=86  Identities=23%  Similarity=0.279  Sum_probs=59.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |+++..-|+.....+|++||++++..+.|++    +|..+-+.-... |+.+.+..+.     ++..|.+|--..   ..
T Consensus       198 GlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT~~vn~~~~~~vv~~i~~~T-----~gG~d~~~e~~G---~~  265 (366)
T COG1062         198 GLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGATHFVNPKEVDDVVEAIVELT-----DGGADYAFECVG---NV  265 (366)
T ss_pred             HHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCceeecchhhhhHHHHHHHhc-----CCCCCEEEEccC---CH
Confidence            6777777777788999999999999998876    444332222222 6777777663     346888864332   34


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      +.++.++..+.++|..++-
T Consensus       266 ~~~~~al~~~~~~G~~v~i  284 (366)
T COG1062         266 EVMRQALEATHRGGTSVII  284 (366)
T ss_pred             HHHHHHHHHHhcCCeEEEE
Confidence            5788888888888887763

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.75  E-value=0.19  Score=39.74  Aligned_cols=85  Identities=24%  Similarity=0.299  Sum_probs=51.9

Q ss_pred             cccHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |+.+..+++.. +. +|++++.+++..+.+++    .|...-+.....+..+.+..+.     .+.+|+||--..   ..
T Consensus       204 G~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~~g~d~vid~~G---~~  270 (371)
T cd08281         204 GLSALLGAVAA-GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----GGGVDYAFEMAG---SV  270 (371)
T ss_pred             HHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----CCCCCEEEECCC---Ch
Confidence            44445555554 55 79999999998887754    4543212222233344444332     236998874322   24


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++.+.+.|+++|.++.-
T Consensus       271 ~~~~~~~~~l~~~G~iv~~  289 (371)
T cd08281         271 PALETAYEITRRGGTTVTA  289 (371)
T ss_pred             HHHHHHHHHHhcCCEEEEE
Confidence            5677888999999998863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=94.66  E-value=0.047  Score=43.46  Aligned_cols=84  Identities=19%  Similarity=0.193  Sum_probs=64.5

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEE-EcC--CCcccHHHHHHHH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF-VDA--DKDNYCNYHERLM   87 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~-iD~--~~~~~~~~~~~~~   87 (157)
                      ......+++++.++.-+..+.......++.++-.++.+|..+...       +++.||.+. +|.  ..+.....++++.
T Consensus       130 ~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f-------edn~fd~v~~ld~~~~~~~~~~~y~Ei~  202 (364)
T KOG1269|consen  130 VFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF-------EDNTFDGVRFLEVVCHAPDLEKVYAEIY  202 (364)
T ss_pred             HhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-------CccccCcEEEEeecccCCcHHHHHHHHh
Confidence            456789999999999999998888888887666667777765422       267899995 454  2345677899999


Q ss_pred             hcccCCeEEEEecc
Q 031568           88 KLLKVGGIAVYDNT  101 (157)
Q Consensus        88 ~~L~~gG~iv~~~~  101 (157)
                      +.++|||+.++...
T Consensus       203 rv~kpGG~~i~~e~  216 (364)
T KOG1269|consen  203 RVLKPGGLFIVKEW  216 (364)
T ss_pred             cccCCCceEEeHHH
Confidence            99999999998544

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=94.64  E-value=0.076  Score=39.03  Aligned_cols=99  Identities=14%  Similarity=0.163  Sum_probs=55.4

Q ss_pred             cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--Ccc
Q 031568            2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~   78 (157)
                      |=.-+.+|+..+ +-+|.+.|.-+.              ++  .++.+|.... | +     ++++.|++++.-.  -.+
T Consensus        80 GCGdA~la~~~~~~~~V~SfDLva~--------------n~--~Vtacdia~v-P-L-----~~~svDv~VfcLSLMGTn  136 (219)
T PF05148_consen   80 GCGDAKLAKAVPNKHKVHSFDLVAP--------------NP--RVTACDIANV-P-L-----EDESVDVAVFCLSLMGTN  136 (219)
T ss_dssp             S-TT-HHHHH--S---EEEEESS-S--------------ST--TEEES-TTS--S--------TT-EEEEEEES---SS-
T ss_pred             CCchHHHHHhcccCceEEEeeccCC--------------CC--CEEEecCccC-c-C-----CCCceeEEEEEhhhhCCC
Confidence            334445555444 335677766432              12  3577888543 4 2     2688999987642  347


Q ss_pred             cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS  142 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  142 (157)
                      +.+++.++.|.|++||.+.+-.+..+                  ...++.|.+.+.. -+|...
T Consensus       137 ~~~fi~EA~RvLK~~G~L~IAEV~SR------------------f~~~~~F~~~~~~-~GF~~~  181 (219)
T PF05148_consen  137 WPDFIREANRVLKPGGILKIAEVKSR------------------FENVKQFIKALKK-LGFKLK  181 (219)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEGGG-------------------S-HHHHHHHHHC-TTEEEE
T ss_pred             cHHHHHHHHheeccCcEEEEEEeccc------------------CcCHHHHHHHHHH-CCCeEE
Confidence            89999999999999999988776431                  2235777776664 355543

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.34  E-value=0.79  Score=33.60  Aligned_cols=73  Identities=19%  Similarity=0.157  Sum_probs=47.5

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-----HHHHHhhcCCCCCceeEEEEcCCCc--------cc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-----VLDQLLKYSENEGSFDYAFVDADKD--------NY   79 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----~l~~~~~~~~~~~~fD~I~iD~~~~--------~~   79 (157)
                      ++++|++||+.|-..           . ..|.++++|+.+     .+....    ...++|+|.+|+.+.        .+
T Consensus        69 ~~~~ivavDi~p~~~-----------~-~~V~~iq~d~~~~~~~~~l~~~l----~~~~~DvV~sD~ap~~~g~~~~Dh~  132 (205)
T COG0293          69 AGGKIVAVDILPMKP-----------I-PGVIFLQGDITDEDTLEKLLEAL----GGAPVDVVLSDMAPNTSGNRSVDHA  132 (205)
T ss_pred             CCCcEEEEECccccc-----------C-CCceEEeeeccCccHHHHHHHHc----CCCCcceEEecCCCCcCCCccccHH
Confidence            567799999987541           1 358888888653     222221    134579999997541        11


Q ss_pred             ------HHHHHHHHhcccCCeEEEEecc
Q 031568           80 ------CNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        80 ------~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                            ...++.+...|+|||.+++...
T Consensus       133 r~~~L~~~a~~~a~~vL~~~G~fv~K~f  160 (205)
T COG0293         133 RSMYLCELALEFALEVLKPGGSFVAKVF  160 (205)
T ss_pred             HHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence                  1235556689999999999753

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.26  E-value=0.58  Score=34.36  Aligned_cols=84  Identities=18%  Similarity=0.070  Sum_probs=55.4

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH-HHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH-ERL   86 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~-~~~   86 (157)
                      .+--.+.+.+++||.+|....-.-..+++   .+|+--+.+||..--.-..    --+..|+||.|-..++-.+++ ..+
T Consensus        94 VSDIv~~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~~----~Ve~VDviy~DVAQp~Qa~I~~~Na  166 (231)
T COG1889          94 VSDIVGEGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYRH----LVEKVDVIYQDVAQPNQAEILADNA  166 (231)
T ss_pred             HHhccCCCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhhh----hcccccEEEEecCCchHHHHHHHHH
Confidence            44433589999999999876555444433   3477788999865322110    135799999998766655544 445


Q ss_pred             HhcccCCeEEEE
Q 031568           87 MKLLKVGGIAVY   98 (157)
Q Consensus        87 ~~~L~~gG~iv~   98 (157)
                      ...|++||.+++
T Consensus       167 ~~FLk~~G~~~i  178 (231)
T COG1889         167 EFFLKKGGYVVI  178 (231)
T ss_pred             HHhcccCCeEEE
Confidence            679999995443

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=94.22  E-value=0.36  Score=37.60  Aligned_cols=88  Identities=18%  Similarity=0.144  Sum_probs=50.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+|+......|++++.+++..+.+++    .|...-+.....+..+ +..+.    ....+|.+++|+.  ....
T Consensus       173 G~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~-~~~~~----~~~~~d~~v~d~~--G~~~  241 (347)
T PRK10309        173 GLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQ-IQSVL----RELRFDQLILETA--GVPQ  241 (347)
T ss_pred             HHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHH-HHHHh----cCCCCCeEEEECC--CCHH
Confidence            3344445555433347899999988776643    4543112222223222 22221    1346886667764  2345


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .+..+.+.|++||.++.-.
T Consensus       242 ~~~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        242 TVELAIEIAGPRAQLALVG  260 (347)
T ss_pred             HHHHHHHHhhcCCEEEEEc
Confidence            6788889999999998743

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.22  E-value=0.29  Score=38.29  Aligned_cols=80  Identities=11%  Similarity=0.074  Sum_probs=50.1

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |+.+..++++ ..+.+|+++|.+++..+.+++    .+..   ..+    .+ +..       ...+|+||=-.......
T Consensus       176 Gl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~---~~~----~~-~~~-------~~g~d~viD~~G~~~~~  236 (341)
T cd08237         176 GYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET---YLI----DD-IPE-------DLAVDHAFECVGGRGSQ  236 (341)
T ss_pred             HHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce---eeh----hh-hhh-------ccCCcEEEECCCCCccH
Confidence            5555556654 456789999999998888764    2221   111    11 111       22489887333322245


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 031568           81 NYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ..++.+.++|+++|.++.-.
T Consensus       237 ~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         237 SAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             HHHHHHHHhCcCCcEEEEEe
Confidence            67888999999999998643

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.13  E-value=0.032  Score=42.55  Aligned_cols=56  Identities=32%  Similarity=0.490  Sum_probs=39.6

Q ss_pred             cEEEEEccHHHHHHHHhhcCCCCCceeEE----EEcCCCcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           42 KINFIESEALSVLDQLLKYSENEGSFDYA----FVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I----~iD~~~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ++.+..||..+.-..-.    ..++||.|    |+|.. ++..+|++.+.++|+|||++|--..+
T Consensus       145 ~~sm~aGDF~e~y~~~~----~~~~~d~VvT~FFIDTA-~Ni~~Yi~tI~~lLkpgG~WIN~GPL  204 (270)
T PF07942_consen  145 NLSMCAGDFLEVYGPDE----NKGSFDVVVTCFFIDTA-ENIIEYIETIEHLLKPGGYWINFGPL  204 (270)
T ss_pred             ceeEecCccEEecCCcc----cCCcccEEEEEEEeech-HHHHHHHHHHHHHhccCCEEEecCCc
Confidence            56677777776543210    13689998    46764 46788999999999999999865544

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=94.13  E-value=1.9  Score=32.76  Aligned_cols=117  Identities=14%  Similarity=0.088  Sum_probs=67.6

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccH
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYC   80 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~   80 (157)
                      -|..++..  -.+|++.|.++.|...    +++-|.    +++  +..++-.       .+.+||+|-+-.   ......
T Consensus       108 VT~~l~~~--f~~v~aTE~S~~Mr~r----L~~kg~----~vl--~~~~w~~-------~~~~fDvIscLNvLDRc~~P~  168 (265)
T PF05219_consen  108 VTERLAPL--FKEVYATEASPPMRWR----LSKKGF----TVL--DIDDWQQ-------TDFKFDVISCLNVLDRCDRPL  168 (265)
T ss_pred             HHHHHHhh--cceEEeecCCHHHHHH----HHhCCC----eEE--ehhhhhc-------cCCceEEEeehhhhhccCCHH
Confidence            35555543  3469999999999554    444444    333  3333322       146899997632   122456


Q ss_pred             HHHHHHHhcccCCeEEEEecccC-Cccc-------cCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeE
Q 031568           81 NYHERLMKLLKVGGIAVYDNTLW-GGTV-------AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL  141 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  141 (157)
                      ..++.+.+.|+|+|+++..-++. +..|       ..|.+..+-.- .+..+.+..|. .+....+|+.
T Consensus       169 ~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g-~~~E~~v~~l~-~v~~p~GF~v  235 (265)
T PF05219_consen  169 TLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKG-ATFEEQVSSLV-NVFEPAGFEV  235 (265)
T ss_pred             HHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCC-CcHHHHHHHHH-HHHHhcCCEE
Confidence            78999999999999998754442 1111       11222121111 23667788888 5555566653

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.05  E-value=2.2  Score=34.49  Aligned_cols=89  Identities=13%  Similarity=0.204  Sum_probs=53.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHH------------HHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeE
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLP------------IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   69 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~------------~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~   69 (157)
                      |++|..+.+.. +-.|+++|++++.++..++            .++++..+.|+++- .|..+.+          ..-|+
T Consensus        12 GLv~g~~lA~~-GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~a~----------~~adv   79 (414)
T COG1004          12 GLVTGACLAEL-GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEEAV----------KDADV   79 (414)
T ss_pred             HHHHHHHHHHc-CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHHHH----------hcCCE
Confidence            77888877764 6899999999999988743            34444333445544 3444332          24678


Q ss_pred             EEEcCCC----cc------cHHHHHHHHhcccCCeEEEEeccc
Q 031568           70 AFVDADK----DN------YCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        70 I~iD~~~----~~------~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      +|+-.+-    ..      .....+.+...++...++|.....
T Consensus        80 ~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTV  122 (414)
T COG1004          80 VFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTV  122 (414)
T ss_pred             EEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCC
Confidence            8874321    11      123344455677777777775443

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=93.86  E-value=0.22  Score=39.96  Aligned_cols=60  Identities=18%  Similarity=0.296  Sum_probs=47.0

Q ss_pred             CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEE-cC----CCcccHHHHHHHHhcccCCeEEEEecccC
Q 031568           38 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV-DA----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        38 ~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~i-D~----~~~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ++ ++++++++++.+.+.+..     .+++|.+.+ |.    +...+.+.++.+.+.++|||.++.-+...
T Consensus       273 ~~-drv~i~t~si~~~L~~~~-----~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~  337 (380)
T PF11899_consen  273 RL-DRVRIHTDSIEEVLRRLP-----PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV  337 (380)
T ss_pred             CC-CeEEEEeccHHHHHHhCC-----CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence            45 699999999999998763     678998864 54    22346677888899999999999876643

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=93.75  E-value=0.027  Score=36.97  Aligned_cols=38  Identities=21%  Similarity=0.526  Sum_probs=26.7

Q ss_pred             ceeEEEEcCC---------CcccHHHHHHHHhcccCCeEEEEecccC
Q 031568           66 SFDYAFVDAD---------KDNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        66 ~fD~I~iD~~---------~~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      +||.|++-+-         ......+|+.+...|+|||.+|.+-=-|
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w   47 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPW   47 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence            4899987431         2345678999999999999999975444

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=93.70  E-value=0.32  Score=36.75  Aligned_cols=72  Identities=17%  Similarity=0.244  Sum_probs=43.3

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM   87 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~   87 (157)
                      |.++.+..+|+++|.+++.++.|++    .|+.+..   ..+ .+.+          ..+|+|++..+.....++++++.
T Consensus         5 L~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~~~---~~~-~~~~----------~~~DlvvlavP~~~~~~~l~~~~   66 (258)
T PF02153_consen    5 LRKAGPDVEVYGYDRDPETLEAALE----LGIIDEA---STD-IEAV----------EDADLVVLAVPVSAIEDVLEEIA   66 (258)
T ss_dssp             HHHTTTTSEEEEE-SSHHHHHHHHH----TTSSSEE---ESH-HHHG----------GCCSEEEE-S-HHHHHHHHHHHH
T ss_pred             HHhCCCCeEEEEEeCCHHHHHHHHH----CCCeeec---cCC-HhHh----------cCCCEEEEcCCHHHHHHHHHHhh
Confidence            4445568999999999999877754    3543321   222 2221          24688888776666677777777


Q ss_pred             hcccCCeEEE
Q 031568           88 KLLKVGGIAV   97 (157)
Q Consensus        88 ~~L~~gG~iv   97 (157)
                      +.+++|++++
T Consensus        67 ~~~~~~~iv~   76 (258)
T PF02153_consen   67 PYLKPGAIVT   76 (258)
T ss_dssp             CGS-TTSEEE
T ss_pred             hhcCCCcEEE
Confidence            7777665543

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=93.50  E-value=1.4  Score=34.55  Aligned_cols=84  Identities=13%  Similarity=0.090  Sum_probs=56.3

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEE--EEccHHHHHHHHhhcCCCCCceeEEEEcC-C-----CcccHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGSFDYAFVDA-D-----KDNYCNYHE   84 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~-----~~~~~~~~~   84 (157)
                      ...+.+.+|++.++++.+.+++..... +.+++  +.||..+.+..+.+. .......+++.-+ .     ...-..++.
T Consensus       103 ~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~-~~~~~~r~~~flGSsiGNf~~~ea~~fL~  180 (319)
T TIGR03439       103 KSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRP-ENRSRPTTILWLGSSIGNFSRPEAAAFLA  180 (319)
T ss_pred             CCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhcccc-cccCCccEEEEeCccccCCCHHHHHHHHH
Confidence            357899999999999999999973333 34555  899988876543210 0023356666543 1     223346777


Q ss_pred             HHHh-cccCCeEEEE
Q 031568           85 RLMK-LLKVGGIAVY   98 (157)
Q Consensus        85 ~~~~-~L~~gG~iv~   98 (157)
                      .+.+ .|+|||.+++
T Consensus       181 ~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       181 GFLATALSPSDSFLI  195 (319)
T ss_pred             HHHHhhCCCCCEEEE
Confidence            8888 8999998887

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=93.46  E-value=0.14  Score=38.83  Aligned_cols=90  Identities=9%  Similarity=0.025  Sum_probs=57.0

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      +|.-|..|+...  .+++++|+|+.+++..++.+.   ..++++++++|+.++-....    -......|+.+-+.....
T Consensus        41 ~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~----~~~~~~~vv~NlPy~is~  111 (262)
T PF00398_consen   41 PGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDL----LKNQPLLVVGNLPYNISS  111 (262)
T ss_dssp             TSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGH----CSSSEEEEEEEETGTGHH
T ss_pred             CccchhhHhccc--CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHh----hcCCceEEEEEecccchH
Confidence            467777787764  999999999999999988665   34689999999997632100    013456777665433334


Q ss_pred             HHHHHHHhccc---CCeEEEEe
Q 031568           81 NYHERLMKLLK---VGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~---~gG~iv~~   99 (157)
                      .++..+...-+   ...++++.
T Consensus       112 ~il~~ll~~~~~g~~~~~l~vq  133 (262)
T PF00398_consen  112 PILRKLLELYRFGRVRMVLMVQ  133 (262)
T ss_dssp             HHHHHHHHHGGGCEEEEEEEEE
T ss_pred             HHHHHHhhcccccccceEEEEe
Confidence            45555554222   33555553

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.40  E-value=0.82  Score=35.90  Aligned_cols=88  Identities=15%  Similarity=0.090  Sum_probs=52.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|.+.-+.....+..+.+....    ....+|+|+ |+.  ....
T Consensus       189 G~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~~g~d~vi-d~~--g~~~  257 (358)
T TIGR03451       189 GDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GGFGADVVI-DAV--GRPE  257 (358)
T ss_pred             HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CCCCCCEEE-ECC--CCHH
Confidence            3344445555433369999999998887754    4543222223334444444332    124699887 442  1234


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.+++||.++.-.
T Consensus       258 ~~~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       258 TYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             HHHHHHHHhccCCEEEEEC
Confidence            6777888999999998643

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.24  E-value=3.3  Score=33.54  Aligned_cols=96  Identities=14%  Similarity=0.178  Sum_probs=55.6

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcC-----CCC---CceeEEEE
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----ENE---GSFDYAFV   72 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~-----~~~---~~fD~I~i   72 (157)
                      .||.|+...+. .+.+|+++|+++..++...+     |   +..+..-+..+.+....++.     ...   ..-|.+++
T Consensus        20 VGLPlA~~fA~-~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~iI   90 (436)
T COG0677          20 VGLPLAAAFAS-AGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFII   90 (436)
T ss_pred             ccHHHHHHHHH-cCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEEE
Confidence            47777765554 48999999999999886633     3   23334444444333332110     000   14566655


Q ss_pred             cCC----------CcccHHHHHHHHhcccCCeEEEEecccCCc
Q 031568           73 DAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  105 (157)
Q Consensus        73 D~~----------~~~~~~~~~~~~~~L~~gG~iv~~~~~~~~  105 (157)
                      .-+          ........+.+.+.|++|-+++.+...+.|
T Consensus        91 ~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PG  133 (436)
T COG0677          91 CVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPG  133 (436)
T ss_pred             EecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence            321          111233455666899999999998766544

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=93.10  E-value=1.4  Score=27.84  Aligned_cols=74  Identities=16%  Similarity=0.185  Sum_probs=51.5

Q ss_pred             EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcccCCe
Q 031568           17 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGG   94 (157)
Q Consensus        17 v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~gG   94 (157)
                      |..+|-++...+..++.++..|.. .+ ....+..+.+..+.     ...||+|++|...+  ...++++.+.+.- ++.
T Consensus         1 Ilivd~~~~~~~~l~~~l~~~~~~-~v-~~~~~~~~~~~~~~-----~~~~d~iiid~~~~~~~~~~~~~~i~~~~-~~~   72 (112)
T PF00072_consen    1 ILIVDDDPEIRELLEKLLERAGYE-EV-TTASSGEEALELLK-----KHPPDLIIIDLELPDGDGLELLEQIRQIN-PSI   72 (112)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTTEE-EE-EEESSHHHHHHHHH-----HSTESEEEEESSSSSSBHHHHHHHHHHHT-TTS
T ss_pred             cEEEECCHHHHHHHHHHHHhCCCC-EE-EEECCHHHHHHHhc-----ccCceEEEEEeeecccccccccccccccc-ccc
Confidence            567899999999999999977652 33 35677777777664     45699999996433  3456677665544 454


Q ss_pred             EEEE
Q 031568           95 IAVY   98 (157)
Q Consensus        95 ~iv~   98 (157)
                      .+++
T Consensus        73 ~ii~   76 (112)
T PF00072_consen   73 PIIV   76 (112)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            4443

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=93.04  E-value=0.093  Score=41.36  Aligned_cols=86  Identities=15%  Similarity=0.125  Sum_probs=60.2

Q ss_pred             HHHhhCCCcEEEEEeCChhHHH-------HHHHHHHHcCCCCc-EEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568            7 LFMTGNKILQITAIDVNRETYE-------IGLPIIKKAGVDHK-INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-   77 (157)
Q Consensus         7 ~l~~~~~~~~v~~ve~~~~~~~-------~a~~~~~~~~~~~~-i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-   77 (157)
                      +.+++.=|+.|++.|+|-.++.       -.+.|+++.|.+++ +.+..+|...-  .+.    ....||.|++|++-. 
T Consensus       223 Lvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~--~~r----sn~~fDaIvcDPPYGV  296 (421)
T KOG2671|consen  223 LVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNP--PLR----SNLKFDAIVCDPPYGV  296 (421)
T ss_pred             eeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCc--chh----hcceeeEEEeCCCcch
Confidence            3344434899999999987776       45789999986655 77888887652  221    145799999997410 


Q ss_pred             -----------------------c------------cHHHHHHHHhcccCCeEEEE
Q 031568           78 -----------------------N------------YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 -----------------------~------------~~~~~~~~~~~L~~gG~iv~   98 (157)
                                             .            +.+.+....+.|..||++++
T Consensus       297 Re~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~  352 (421)
T KOG2671|consen  297 REGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF  352 (421)
T ss_pred             hhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence                                   0            12445556689999999997

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=92.99  E-value=1.2  Score=28.92  Aligned_cols=81  Identities=20%  Similarity=0.249  Sum_probs=53.3

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcCCCC-CceeEEEEcCCCc--ccHHHHHHHHhcc
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENE-GSFDYAFVDADKD--NYCNYHERLMKLL   90 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~-~~fD~I~iD~~~~--~~~~~~~~~~~~L   90 (157)
                      ..++++|.++.++..++..... .....+.+..++.... ++.      .. ..||++.......  .....+..+.+.+
T Consensus        73 ~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l  145 (257)
T COG0500          73 AYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF------EDSASFDLVISLLVLHLLPPAKALRELLRVL  145 (257)
T ss_pred             ceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC------CCCCceeEEeeeeehhcCCHHHHHHHHHHhc
Confidence            4899999999999986555433 2211167888887652 221      12 3799994333211  1366788888999


Q ss_pred             cCCeEEEEeccc
Q 031568           91 KVGGIAVYDNTL  102 (157)
Q Consensus        91 ~~gG~iv~~~~~  102 (157)
                      +|+|.+++....
T Consensus       146 ~~~g~~~~~~~~  157 (257)
T COG0500         146 KPGGRLVLSDLL  157 (257)
T ss_pred             CCCcEEEEEecc
Confidence            999999886544

>PHA01634 hypothetical protein

Probab=92.82  E-value=0.27  Score=33.44  Aligned_cols=62  Identities=6%  Similarity=-0.021  Sum_probs=45.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |=|+++++.+ ...+|+++|++|...+..++|++.+.+-++.....    ++ +.      .-+.||...+|+.
T Consensus        40 GdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW-~~------~Y~~~Di~~iDCe  101 (156)
T PHA01634         40 GSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EW-NG------EYEDVDIFVMDCE  101 (156)
T ss_pred             cchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cc-cc------cCCCcceEEEEcc
Confidence            5566676665 57899999999999999999998876544443332    22 11      1468999999985

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.81  E-value=0.85  Score=35.33  Aligned_cols=84  Identities=15%  Similarity=0.153  Sum_probs=49.6

Q ss_pred             cccHHHHHhhCCCcE-EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |+.+..+++.. +.+ |++++.+++..+.+++    .|...-+.....+ .+.+..+.    ....+|+||--..   ..
T Consensus       176 G~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~~~~~d~vid~~g---~~  242 (339)
T cd08239         176 GLGALMLARAL-GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----SGAGADVAIECSG---NT  242 (339)
T ss_pred             HHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----CCCCCCEEEECCC---CH
Confidence            44555566554 555 9999999988777654    4543222222222 22233322    1346998884332   23


Q ss_pred             HHHHHHHhcccCCeEEEE
Q 031568           81 NYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~   98 (157)
                      ..+..+.+.|+++|.++.
T Consensus       243 ~~~~~~~~~l~~~G~~v~  260 (339)
T cd08239         243 AARRLALEAVRPWGRLVL  260 (339)
T ss_pred             HHHHHHHHHhhcCCEEEE
Confidence            455677889999999986

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=92.77  E-value=1.1  Score=33.93  Aligned_cols=86  Identities=19%  Similarity=0.134  Sum_probs=50.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+|+.....+|+++|.+++..+.+++    .|.+.-+..  .+..+.+..+.    ....+|+||--..   ...
T Consensus       133 G~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~----~~~g~d~vid~~G---~~~  199 (280)
T TIGR03366       133 GLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQ----NGRGVDVALEFSG---ATA  199 (280)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHh----CCCCCCEEEECCC---ChH
Confidence            5556666666533459999999988877765    444211111  11122222221    1346999874332   244


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.++++|.++.-.
T Consensus       200 ~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       200 AVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             HHHHHHHHhcCCCEEEEec
Confidence            6778889999999998644

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08293 PTGR2 Prostaglandin reductase

Probab=92.73  E-value=1.1  Score=34.78  Aligned_cols=82  Identities=13%  Similarity=0.083  Sum_probs=49.8

Q ss_pred             cHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568            4 PTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY   82 (157)
Q Consensus         4 st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~   82 (157)
                      .+..+|+.. +. +|++++.+++..+.+++.   .|.+.-+.....+..+.+..+.     .+.+|+|| |+...  . .
T Consensus       170 ~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gvd~vi-d~~g~--~-~  236 (345)
T cd08293         170 LAGQIGRLL-GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGVDVYF-DNVGG--E-I  236 (345)
T ss_pred             HHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCceEEE-ECCCc--H-H
Confidence            344455554 55 899999988877666552   4654222222334445444432     34699888 44221  2 3


Q ss_pred             HHHHHhcccCCeEEEE
Q 031568           83 HERLMKLLKVGGIAVY   98 (157)
Q Consensus        83 ~~~~~~~L~~gG~iv~   98 (157)
                      ++.+.+.|+++|.++.
T Consensus       237 ~~~~~~~l~~~G~iv~  252 (345)
T cd08293         237 SDTVISQMNENSHIIL  252 (345)
T ss_pred             HHHHHHHhccCCEEEE
Confidence            5778899999999985

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=92.72  E-value=3.7  Score=33.29  Aligned_cols=92  Identities=16%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc-----CCCCCceeEEEEcCC
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-----SENEGSFDYAFVDAD   75 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~-----~~~~~~fD~I~iD~~   75 (157)
                      ||++++..++. .+-+|+++|++++.++..+     .|.   +.+...+..+.+....+.     ....+.-|+||+..+
T Consensus        14 ~G~~~A~~La~-~G~~V~~~D~~~~~v~~l~-----~g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~vp   84 (415)
T PRK11064         14 IGLPTAAAFAS-RQKQVIGVDINQHAVDTIN-----RGE---IHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAVP   84 (415)
T ss_pred             hhHHHHHHHHh-CCCEEEEEeCCHHHHHHHH-----CCC---CCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEcC
Confidence            57676665544 3689999999999887532     121   222333444433221100     000124789987654


Q ss_pred             Cc----------ccHHHHHHHHhcccCCeEEEEecc
Q 031568           76 KD----------NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        76 ~~----------~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .+          ......+.+.+.+++|.++|....
T Consensus        85 tp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST  120 (415)
T PRK11064         85 TPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST  120 (415)
T ss_pred             CCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            32          233445666788888888776543

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=92.66  E-value=0.93  Score=34.29  Aligned_cols=71  Identities=10%  Similarity=0.129  Sum_probs=53.3

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---ccHHHHHHHH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---NYCNYHERLM   87 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~~~~~~~~~~   87 (157)
                      .+++-++..+|.+|+=+...++|++.   ..++++..+|....+....   .+.+.=-+|+||++.+   .|..+.+.+.
T Consensus       107 lR~qDRl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~~~l~a~L---PP~erRglVLIDPPfE~~~eY~rvv~~l~  180 (279)
T COG2961         107 LREQDRLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGFLALKAHL---PPKERRGLVLIDPPFELKDEYQRVVEALA  180 (279)
T ss_pred             cchhceeeeeecCccHHHHHHHHhCC---CcceEEEecCcHHHHhhhC---CCCCcceEEEeCCCcccccHHHHHHHHHH
Confidence            44788999999999999999999972   3589999999998876543   1345578999999643   4555444443

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=92.49  E-value=0.43  Score=33.73  Aligned_cols=88  Identities=11%  Similarity=0.092  Sum_probs=51.0

Q ss_pred             HHhhCC-CcEE--EEEeCChhHHHH---HHHHHHHcCCCCcEE-EEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            8 FMTGNK-ILQI--TAIDVNRETYEI---GLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         8 l~~~~~-~~~v--~~ve~~~~~~~~---a~~~~~~~~~~~~i~-~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |+...+ +..+  ++.|...+..+.   +.+|++.+.-. .++ ++.-|+.+.-+...   .....||.|+.+.+...  
T Consensus        14 L~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~~VDat~l~~~~~---~~~~~FDrIiFNFPH~G~~   89 (166)
T PF10354_consen   14 LARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL-GVTVLHGVDATKLHKHFR---LKNQRFDRIIFNFPHVGGG   89 (166)
T ss_pred             HHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc-CCccccCCCCCccccccc---ccCCcCCEEEEeCCCCCCC
Confidence            444444 5555  455555444443   33666665222 233 34456665443321   02578999998754322  


Q ss_pred             --------------cHHHHHHHHhcccCCeEEEEe
Q 031568           79 --------------YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 --------------~~~~~~~~~~~L~~gG~iv~~   99 (157)
                                    ...+|+.+.++|+++|.|.+.
T Consensus        90 ~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT  124 (166)
T PF10354_consen   90 SEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT  124 (166)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                          245788888999999999874

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=92.47  E-value=1.3  Score=34.48  Aligned_cols=87  Identities=13%  Similarity=0.105  Sum_probs=66.2

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH   83 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~   83 (157)
                      |+.-..++..+.+|+++=-+++.++.+.+   ..|.+.-|.....|..+.|++..     +...|+.|=+-.    -+.+
T Consensus       165 svvgQiAKlkG~rVVGiaGg~eK~~~l~~---~lGfD~~idyk~~d~~~~L~~a~-----P~GIDvyfeNVG----g~v~  232 (340)
T COG2130         165 SVVGQIAKLKGCRVVGIAGGAEKCDFLTE---ELGFDAGIDYKAEDFAQALKEAC-----PKGIDVYFENVG----GEVL  232 (340)
T ss_pred             hHHHHHHHhhCCeEEEecCCHHHHHHHHH---hcCCceeeecCcccHHHHHHHHC-----CCCeEEEEEcCC----chHH
Confidence            34444456689999999999999988876   45777678889889998888764     467999886543    3468


Q ss_pred             HHHHhcccCCeEEEEeccc
Q 031568           84 ERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~~~~~  102 (157)
                      +.+..+|+..+.|++-..+
T Consensus       233 DAv~~~ln~~aRi~~CG~I  251 (340)
T COG2130         233 DAVLPLLNLFARIPVCGAI  251 (340)
T ss_pred             HHHHHhhccccceeeeeeh
Confidence            8888999999888764433

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=92.47  E-value=1.2  Score=34.70  Aligned_cols=88  Identities=16%  Similarity=0.154  Sum_probs=53.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..++.+++......+++++.+++..+.+++    .|...-+.....+..+.+..+.    ....+|+|+-...   -..
T Consensus       179 G~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~~~d~vld~~g---~~~  247 (351)
T cd08285         179 GLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----GGKGVDAVIIAGG---GQD  247 (351)
T ss_pred             HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----CCCCCcEEEECCC---CHH
Confidence            4455556665544479999999888777664    4543222222234333333332    1346998874332   134


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .+..+.+.|+++|.++.-.
T Consensus       248 ~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         248 TFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             HHHHHHHHhhcCCEEEEec
Confidence            6788889999999998643

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.45  E-value=1.5  Score=36.33  Aligned_cols=104  Identities=20%  Similarity=0.282  Sum_probs=65.2

Q ss_pred             CcEEEEEeC-ChhHHHHHHHHHHHcC-CC-CcEEEE----EccHH----HHHHHHhhcCCCCCceeEEEEcCCCc--c--
Q 031568           14 ILQITAIDV-NRETYEIGLPIIKKAG-VD-HKINFI----ESEAL----SVLDQLLKYSENEGSFDYAFVDADKD--N--   78 (157)
Q Consensus        14 ~~~v~~ve~-~~~~~~~a~~~~~~~~-~~-~~i~~~----~~d~~----~~l~~~~~~~~~~~~fD~I~iD~~~~--~--   78 (157)
                      ..-|.+||. ...++++.|-+.+++. +. +.|++.    -.|+.    +.++..     ..+.||+|++|..-+  +  
T Consensus       408 rVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a-----~~~gfDVvLiDTAGR~~~~~  482 (587)
T KOG0781|consen  408 RVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEA-----RNQGFDVVLIDTAGRMHNNA  482 (587)
T ss_pred             eEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHH-----HhcCCCEEEEeccccccCCh
Confidence            445677884 5678899888877752 11 234332    12322    223322     256899999997422  2  


Q ss_pred             -cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 031568           79 -YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP  137 (157)
Q Consensus        79 -~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (157)
                       .-.-+....+.-+|+-+|.+...+.+.               +..+.++.|++.+.+++
T Consensus       483 ~lm~~l~k~~~~~~pd~i~~vgealvg~---------------dsv~q~~~fn~al~~~~  527 (587)
T KOG0781|consen  483 PLMTSLAKLIKVNKPDLILFVGEALVGN---------------DSVDQLKKFNRALADHS  527 (587)
T ss_pred             hHHHHHHHHHhcCCCceEEEehhhhhCc---------------HHHHHHHHHHHHHhcCC
Confidence             233455666788899888887666432               15678899999998875

>PLN02827 Alcohol dehydrogenase-like

Probab=92.34  E-value=1  Score=35.82  Aligned_cols=86  Identities=22%  Similarity=0.198  Sum_probs=50.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+++......|++++.+++..+.|++    .|.+.-+....  .+..+.+..+.     .+.+|+||--..   .
T Consensus       206 G~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~-----~~g~d~vid~~G---~  273 (378)
T PLN02827        206 GLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT-----GGGADYSFECVG---D  273 (378)
T ss_pred             HHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh-----CCCCCEEEECCC---C
Confidence            3444445555433468999999888776644    45532122211  13444444432     236998874332   2


Q ss_pred             HHHHHHHHhcccCC-eEEEEe
Q 031568           80 CNYHERLMKLLKVG-GIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~   99 (157)
                      ...+..+.+.+++| |.++.-
T Consensus       274 ~~~~~~~l~~l~~g~G~iv~~  294 (378)
T PLN02827        274 TGIATTALQSCSDGWGLTVTL  294 (378)
T ss_pred             hHHHHHHHHhhccCCCEEEEE
Confidence            34577788899998 999863

>PLN02740 Alcohol dehydrogenase-like

Probab=92.31  E-value=1.2  Score=35.28  Aligned_cols=86  Identities=21%  Similarity=0.259  Sum_probs=50.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|.+.-+....  .+..+.+..+.     .+.+|+||--..   .
T Consensus       211 G~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----~~g~dvvid~~G---~  278 (381)
T PLN02740        211 GLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT-----GGGVDYSFECAG---N  278 (381)
T ss_pred             HHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh-----CCCCCEEEECCC---C
Confidence            4445555655533379999999998887755    45432222221  12344444432     236998874333   2


Q ss_pred             HHHHHHHHhcccCC-eEEEEe
Q 031568           80 CNYHERLMKLLKVG-GIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~   99 (157)
                      ...++.+...+++| |.++.-
T Consensus       279 ~~~~~~a~~~~~~g~G~~v~~  299 (381)
T PLN02740        279 VEVLREAFLSTHDGWGLTVLL  299 (381)
T ss_pred             hHHHHHHHHhhhcCCCEEEEE
Confidence            35677778888886 887763

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=92.26  E-value=1.6  Score=34.33  Aligned_cols=85  Identities=13%  Similarity=0.097  Sum_probs=51.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..+..+|+. -+.+|++++.+++..+.+++   ..|.+.-+..... +..+.+..+.     .+.+|+|| |+.-   .
T Consensus       172 G~~aiqlAk~-~G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~-----~~gvD~v~-d~vG---~  238 (348)
T PLN03154        172 GQLVGQLAKL-HGCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYF-----PEGIDIYF-DNVG---G  238 (348)
T ss_pred             HHHHHHHHHH-cCCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHC-----CCCcEEEE-ECCC---H
Confidence            3334445554 47789999999888766653   3455322222222 4444444431     34699888 4432   2


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..+..+.+.|+++|.++.-
T Consensus       239 ~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        239 DMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             HHHHHHHHHhccCCEEEEE
Confidence            4678888999999999863

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=92.06  E-value=0.76  Score=33.82  Aligned_cols=87  Identities=14%  Similarity=0.181  Sum_probs=61.4

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcC------CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEE---cCCCc-
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFV---DADKD-   77 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~i---D~~~~-   77 (157)
                      |+-.+|+.-|++.|+.-+..+..++.++.+.      .-.++.+.+.++..+++++.+    .++.+-+|+   |+... 
T Consensus        78 Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~----kgqLskmff~fpdpHfk~  153 (249)
T KOG3115|consen   78 LAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE----KGQLSKMFFLFPDPHFKA  153 (249)
T ss_pred             ccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhh----hcccccceeecCChhHhh
Confidence            3347899999999999999999999887764      124688999999999998753    344443333   32110 


Q ss_pred             -------ccHHHHHHHHhcccCCeEEEE
Q 031568           78 -------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 -------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                             .-..++.+..-+|++||.+..
T Consensus       154 ~khk~rii~~~l~~eyay~l~~gg~~yt  181 (249)
T KOG3115|consen  154 RKHKWRIITSTLLSEYAYVLREGGILYT  181 (249)
T ss_pred             hhccceeechhHHHHHHhhhhcCceEEE
Confidence                   112345566678999999876

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=92.04  E-value=1.5  Score=33.42  Aligned_cols=91  Identities=10%  Similarity=0.079  Sum_probs=55.0

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHh---h-c-CCCCCceeEEEEcC-----CCcccH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL---K-Y-SENEGSFDYAFVDA-----DKDNYC   80 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~---~-~-~~~~~~fD~I~iD~-----~~~~~~   80 (157)
                      ..|+++|+-+|.+|-.+..+|..+....- .+..++.+|+.+--.-+.   - . ..-+.+.=++++.-     +.....
T Consensus        92 ~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~  170 (267)
T PF04672_consen   92 VAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPA  170 (267)
T ss_dssp             H-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHH
T ss_pred             hCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHH
Confidence            56999999999999999999998876542 258999999876421110   0 0 00122344444321     223567


Q ss_pred             HHHHHHHhcccCCeEEEEeccc
Q 031568           81 NYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      .++....+.|.||..+++....
T Consensus       171 ~iv~~l~d~lapGS~L~ish~t  192 (267)
T PF04672_consen  171 GIVARLRDALAPGSYLAISHAT  192 (267)
T ss_dssp             HHHHHHHCCS-TT-EEEEEEEB
T ss_pred             HHHHHHHHhCCCCceEEEEecC
Confidence            8899999999999999997764

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=92.00  E-value=1.4  Score=33.38  Aligned_cols=124  Identities=16%  Similarity=0.107  Sum_probs=70.0

Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH-HHHhcc
Q 031568           12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE-RLMKLL   90 (157)
Q Consensus        12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~-~~~~~L   90 (157)
                      -|.+-|++||.++..-...-..+.+   ..+|--+..||.---+.-    ..-+-.|.||.|-..+....++. .+...|
T Consensus       179 GpeG~VYAVEfs~rsGRdL~nmAkk---RtNiiPIiEDArhP~KYR----mlVgmVDvIFaDvaqpdq~RivaLNA~~FL  251 (317)
T KOG1596|consen  179 GPEGCVYAVEFSHRSGRDLINMAKK---RTNIIPIIEDARHPAKYR----MLVGMVDVIFADVAQPDQARIVALNAQYFL  251 (317)
T ss_pred             CCCceEEEEEecccchHHHHHHhhc---cCCceeeeccCCCchhee----eeeeeEEEEeccCCCchhhhhhhhhhhhhh
Confidence            3788999999987655444333332   136667778886432210    01346899999987665444433 234689


Q ss_pred             cCCeEEEEe---cccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEE
Q 031568           91 KVGGIAVYD---NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC  153 (157)
Q Consensus        91 ~~gG~iv~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~  153 (157)
                      ++||-+++.   |++.+  +..++        +..+.+++.+.++=. .|.=+.++-|...+-.+.
T Consensus       252 k~gGhfvisikancids--tv~ae--------~vFa~Ev~klqee~l-kP~EqvtLEP~erdha~V  306 (317)
T KOG1596|consen  252 KNGGHFVISIKANCIDS--TVFAE--------AVFAAEVKKLQEEQL-KPKEQVTLEPFERDHACV  306 (317)
T ss_pred             ccCCeEEEEEecccccc--cccHH--------HHHHHHHHHHHHhcc-CchheeccccccCCceEE
Confidence            999988873   43321  11111        114445555533211 255566777875544433

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=91.71  E-value=0.31  Score=35.57  Aligned_cols=91  Identities=14%  Similarity=0.100  Sum_probs=50.0

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhH----HHHHHHH-HHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRET----YEIGLPI-IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-   74 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~----~~~a~~~-~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-   74 (157)
                      |+.|.+++.. .|.++|+++=.++..    ....+.+ +.+.....+++.+-.+.....        ..+..|+++... 
T Consensus        60 Gy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--------~pq~~d~~~~~~~  131 (238)
T COG4798          60 GYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--------APQKLDLVPTAQN  131 (238)
T ss_pred             ccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC--------CCCcccccccchh
Confidence            7888888884 478899888665431    1111111 111111224554444433322        134566666421 


Q ss_pred             ---------CCcccHHHHHHHHhcccCCeEEEEec
Q 031568           75 ---------DKDNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        75 ---------~~~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                               ...........+.+.|||||++++.+
T Consensus       132 yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         132 YHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             hhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence                     11123456778889999999998754

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=91.66  E-value=1.9  Score=34.04  Aligned_cols=86  Identities=20%  Similarity=0.253  Sum_probs=51.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc--cHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.+..+|+.....+|++++.+++..+.+++    .|.+.-+.....  +..+.+.++.     .+.+|+||--..   .
T Consensus       199 G~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~-----~~g~d~vid~~g---~  266 (368)
T cd08300         199 GLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT-----DGGVDYTFECIG---N  266 (368)
T ss_pred             HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh-----CCCCcEEEECCC---C
Confidence            4555566666533379999999998877654    454322222221  2444444432     336998874322   2


Q ss_pred             HHHHHHHHhcccCC-eEEEEe
Q 031568           80 CNYHERLMKLLKVG-GIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~   99 (157)
                      ...+..+.+.++++ |.++.-
T Consensus       267 ~~~~~~a~~~l~~~~G~~v~~  287 (368)
T cd08300         267 VKVMRAALEACHKGWGTSVII  287 (368)
T ss_pred             hHHHHHHHHhhccCCCeEEEE
Confidence            34677788899887 888764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=91.66  E-value=1.9  Score=35.72  Aligned_cols=32  Identities=9%  Similarity=0.105  Sum_probs=23.8

Q ss_pred             CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHH
Q 031568            1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLP   32 (157)
Q Consensus         1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~   32 (157)
                      +|+.++..++.. .+.+|+++|++++.++..++
T Consensus        12 vGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~   44 (473)
T PLN02353         12 VGGPTMAVIALKCPDIEVVVVDISVPRIDAWNS   44 (473)
T ss_pred             HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHc
Confidence            366666655543 47899999999999887654

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=91.54  E-value=1.1  Score=35.09  Aligned_cols=88  Identities=17%  Similarity=0.135  Sum_probs=50.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc---cHHHHHHHHhhcCCCCCceeE---EEEcCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSENEGSFDY---AFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~~~~~fD~---I~iD~~   75 (157)
                      |+.++.+|+.. +.+|++++.+++..+.+++    .|...-+.....   +..+.+.++.    ....+|.   +++|+.
T Consensus       179 G~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t----~~~g~d~~~d~v~d~~  249 (349)
T TIGR03201       179 GGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFA----KARGLRSTGWKIFECS  249 (349)
T ss_pred             HHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhc----ccCCCCCCcCEEEECC
Confidence            55555566654 5689999999998877754    354322222222   2223333321    1234652   344553


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEec
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                        .....++.+.+.|++||.++.-.
T Consensus       250 --g~~~~~~~~~~~l~~~G~iv~~G  272 (349)
T TIGR03201       250 --GSKPGQESALSLLSHGGTLVVVG  272 (349)
T ss_pred             --CChHHHHHHHHHHhcCCeEEEEC
Confidence              23456777888999999998643

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=91.51  E-value=1.4  Score=33.71  Aligned_cols=82  Identities=21%  Similarity=0.189  Sum_probs=48.1

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE   84 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~   84 (157)
                      +..+|+. -+.+|++++.+++..+.+++    .|....+.....+..+.+...     ..+.+|+|+-...   ....++
T Consensus       181 ~~~la~~-~G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~-----~~~~~D~vid~~g---~~~~~~  247 (338)
T cd08254         181 AVQIAKA-MGAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAG-----LGGGFDVIFDFVG---TQPTFE  247 (338)
T ss_pred             HHHHHHH-cCCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHh-----cCCCceEEEECCC---CHHHHH
Confidence            3334444 36779999998887776644    344321222222333333211     2457998764322   245678


Q ss_pred             HHHhcccCCeEEEEe
Q 031568           85 RLMKLLKVGGIAVYD   99 (157)
Q Consensus        85 ~~~~~L~~gG~iv~~   99 (157)
                      .+.+.|+++|.++.-
T Consensus       248 ~~~~~l~~~G~~v~~  262 (338)
T cd08254         248 DAQKAVKPGGRIVVV  262 (338)
T ss_pred             HHHHHhhcCCEEEEE
Confidence            888999999999863

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=91.39  E-value=1.4  Score=33.61  Aligned_cols=36  Identities=17%  Similarity=0.211  Sum_probs=28.4

Q ss_pred             cccHHHHHh--hCC-CcEEEEEeCChhHHHHHHHHHHHc
Q 031568            2 HLPTKLFMT--GNK-ILQITAIDVNRETYEIGLPIIKKA   37 (157)
Q Consensus         2 g~st~~l~~--~~~-~~~v~~ve~~~~~~~~a~~~~~~~   37 (157)
                      |..|..+|+  .++ -.+++++|.++.+.++++.-++..
T Consensus        43 GpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   43 GPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             ChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            566777776  334 568999999999999999977654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=91.36  E-value=2.2  Score=33.02  Aligned_cols=84  Identities=18%  Similarity=0.202  Sum_probs=49.5

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH   83 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~   83 (157)
                      .+..+++.....++++++.+++..+.+++    .|.+.-+.....+..+.+..+.    ....+|+|+ |+.  .-...+
T Consensus       181 ~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~~~d~vl-d~~--g~~~~~  249 (345)
T cd08286         181 AALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT----DGRGVDVVI-EAV--GIPATF  249 (345)
T ss_pred             HHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh----CCCCCCEEE-ECC--CCHHHH
Confidence            33445555433788888888877666653    3543223333334434333332    234699887 432  123457


Q ss_pred             HHHHhcccCCeEEEE
Q 031568           84 ERLMKLLKVGGIAVY   98 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~   98 (157)
                      +.+.+.|+++|.++.
T Consensus       250 ~~~~~~l~~~g~~v~  264 (345)
T cd08286         250 ELCQELVAPGGHIAN  264 (345)
T ss_pred             HHHHHhccCCcEEEE
Confidence            788899999999985

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=91.34  E-value=0.31  Score=40.26  Aligned_cols=70  Identities=16%  Similarity=0.265  Sum_probs=45.4

Q ss_pred             CCceeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 031568           64 EGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP  137 (157)
Q Consensus        64 ~~~fD~I~iD~~------~~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (157)
                      ..+||+|=.+.-      +.....++-++-|.|+|+|.+++.+-..                  ....++.....++.+ 
T Consensus       425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------vl~~v~~i~~~lrW~-  485 (506)
T PF03141_consen  425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------VLEKVKKIAKSLRWE-  485 (506)
T ss_pred             CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH------------------HHHHHHHHHHhCcce-
Confidence            568999976642      2345677778889999999999854321                  455666666555554 


Q ss_pred             CeeEEeeec------CCeeEEEEE
Q 031568          138 RVQLSHVAL------GDGITICRR  155 (157)
Q Consensus       138 ~~~~~~~p~------~~G~~v~~~  155 (157)
                         +.+.-.      ...+++++|
T Consensus       486 ---~~~~d~e~g~~~~EkiL~~~K  506 (506)
T PF03141_consen  486 ---VRIHDTEDGPDGPEKILICQK  506 (506)
T ss_pred             ---EEEEecCCCCCCCceEEEEEC
Confidence               333333      356777765

; GO: 0008168 methyltransferase activity

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=91.23  E-value=0.73  Score=34.79  Aligned_cols=62  Identities=18%  Similarity=0.081  Sum_probs=43.4

Q ss_pred             cccHHHH--HhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc
Q 031568            2 HLPTKLF--MTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD   73 (157)
Q Consensus         2 g~st~~l--~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD   73 (157)
                      |+..+.+  +...++..++++|+|..+++..+..+...+..  .++...|...-.+        ....|+.++-
T Consensus       115 GlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~--------~~~~DlaLll  178 (251)
T PF07091_consen  115 GLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP--------KEPADLALLL  178 (251)
T ss_dssp             TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--------TSEESEEEEE
T ss_pred             cCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--------CCCcchhhHH
Confidence            4444443  44457889999999999999999999999875  5555566655422        5679999874

>PTZ00357 methyltransferase; Provisional

Probab=91.17  E-value=0.43  Score=41.24  Aligned_cols=83  Identities=18%  Similarity=0.121  Sum_probs=53.2

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHH-cCC-------CCcEEEEEccHHHHHHHHhhcC----CCCCceeEEEEcC-----C
Q 031568           13 KILQITAIDVNRETYEIGLPIIKK-AGV-------DHKINFIESEALSVLDQLLKYS----ENEGSFDYAFVDA-----D   75 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~-~~~-------~~~i~~~~~d~~~~l~~~~~~~----~~~~~fD~I~iD~-----~   75 (157)
                      -..+|++||.||..+...+.+... ..+       .++|+++.+|..++-......+    ..-+++|+|+..-     +
T Consensus       727 vkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGD  806 (1072)
T PTZ00357        727 VRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGD  806 (1072)
T ss_pred             CcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhccccc
Confidence            367899999998876666555432 233       3469999999998832100000    0013799998632     2


Q ss_pred             CcccHHHHHHHHhcccC----CeE
Q 031568           76 KDNYCNYHERLMKLLKV----GGI   95 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~----gG~   95 (157)
                      .+--++.++-+.+.|++    +|+
T Consensus       807 NELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        807 NELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccCCHHHHHHHHHhhhhhcccccc
Confidence            33357888888888876    676

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=91.14  E-value=2.8  Score=32.25  Aligned_cols=82  Identities=13%  Similarity=0.079  Sum_probs=48.7

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY   82 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~   82 (157)
                      .+..+|+. .+.+|++++.+++..+.+++    .|.+.-+.... .+..+.+....     .+.+|+|| |+.-   ...
T Consensus       154 ~aiqlAk~-~G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~-----~~gvdvv~-d~~G---~~~  219 (325)
T TIGR02825       154 VVGQIAKL-KGCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKAS-----PDGYDCYF-DNVG---GEF  219 (325)
T ss_pred             HHHHHHHH-cCCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhC-----CCCeEEEE-ECCC---HHH
Confidence            33344444 47789999998887776643    45532122222 13333333331     34699888 4431   234


Q ss_pred             HHHHHhcccCCeEEEEe
Q 031568           83 HERLMKLLKVGGIAVYD   99 (157)
Q Consensus        83 ~~~~~~~L~~gG~iv~~   99 (157)
                      ++.+.+.|+++|.++.-
T Consensus       220 ~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       220 SNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             HHHHHHHhCcCcEEEEe
Confidence            67888999999999863

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=91.02  E-value=2.2  Score=33.27  Aligned_cols=85  Identities=19%  Similarity=0.175  Sum_probs=51.6

Q ss_pred             ccHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            3 LPTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         3 ~st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      ..++.+++.. +. +|++++.+++..+.+++    .|.+.-+.....+..+.+.++.    ..+.+|+|+--..   ...
T Consensus       186 ~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~----~~~~~d~vid~~g---~~~  253 (351)
T cd08233         186 LLTILALKAA-GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT----GGGGVDVSFDCAG---VQA  253 (351)
T ss_pred             HHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----CCCCCCEEEECCC---CHH
Confidence            3344455554 55 89999999888877754    3543223333344444444332    1345999985432   234


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       254 ~~~~~~~~l~~~G~~v~~  271 (351)
T cd08233         254 TLDTAIDALRPRGTAVNV  271 (351)
T ss_pred             HHHHHHHhccCCCEEEEE
Confidence            677888999999998863

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.00  E-value=2.2  Score=35.67  Aligned_cols=91  Identities=14%  Similarity=0.043  Sum_probs=54.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEE--EE-------------ccHHHHHHH-HhhcCCCCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINF--IE-------------SEALSVLDQ-LLKYSENEG   65 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~--~~-------------~d~~~~l~~-~~~~~~~~~   65 (157)
                      |+.++..|+.. +++|+++|.+++..+++++    .|.. .+.+  -.             .+..+.... +.+   ...
T Consensus       177 GL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes----lGA~-~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~---~~~  247 (509)
T PRK09424        177 GLAAIGAAGSL-GAIVRAFDTRPEVAEQVES----MGAE-FLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE---QAK  247 (509)
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCe-EEEeccccccccccchhhhcchhHHHHHHHHHHh---ccC
Confidence            56666666665 5689999999999998877    2332 1111  01             111111111 110   014


Q ss_pred             ceeEEEEcCCCcc--cHHH-HHHHHhcccCCeEEEEecc
Q 031568           66 SFDYAFVDADKDN--YCNY-HERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        66 ~fD~I~iD~~~~~--~~~~-~~~~~~~L~~gG~iv~~~~  101 (157)
                      .+|+|+--...+.  .+.. .+.+.+.++|||+++.-.+
T Consensus       248 gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        248 EVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             CCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            6999997664322  2334 4889999999999886544

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=90.96  E-value=1.3  Score=35.62  Aligned_cols=88  Identities=18%  Similarity=0.210  Sum_probs=52.3

Q ss_pred             cccHHHHHhhCC--CcEEEEEeCChhHHHHHHHHHHHc----CCCCcEEEEE----ccHHHHHHHHhhcCCCCCceeEEE
Q 031568            2 HLPTKLFMTGNK--ILQITAIDVNRETYEIGLPIIKKA----GVDHKINFIE----SEALSVLDQLLKYSENEGSFDYAF   71 (157)
Q Consensus         2 g~st~~l~~~~~--~~~v~~ve~~~~~~~~a~~~~~~~----~~~~~i~~~~----~d~~~~l~~~~~~~~~~~~fD~I~   71 (157)
                      |+.++.+|+...  ..+|+++|.+++.++.+++.....    |..  ..++.    .+..+.+..+.    ....+|.||
T Consensus       189 G~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~~v~~~t----~g~g~D~vi  262 (410)
T cd08238         189 GLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHATLMELT----GGQGFDDVF  262 (410)
T ss_pred             HHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHHHHHHHh----CCCCCCEEE
Confidence            445555565532  348999999999999998853211    221  12221    23444444332    134699988


Q ss_pred             EcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568           72 VDADKDNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        72 iD~~~~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      ....   ....+..+.+.++++|.+++
T Consensus       263 d~~g---~~~~~~~a~~~l~~~G~~v~  286 (410)
T cd08238         263 VFVP---VPELVEEADTLLAPDGCLNF  286 (410)
T ss_pred             EcCC---CHHHHHHHHHHhccCCeEEE
Confidence            7543   24567788899998876554

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=90.95  E-value=1.9  Score=33.20  Aligned_cols=84  Identities=17%  Similarity=0.203  Sum_probs=50.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..++.+++...+.++++++.+++..+.+++    .|.+.-+.... .+..+.+...      .+.+|.++++..   ..
T Consensus       175 G~~~~~la~~~~g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~------~~~~d~vi~~~~---~~  241 (338)
T PRK09422        175 GNLALQYAKNVFNAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK------TGGAHAAVVTAV---AK  241 (338)
T ss_pred             HHHHHHHHHHhCCCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh------cCCCcEEEEeCC---CH
Confidence            3344445554347789999999988777743    35431111111 2223333333      235897777754   24


Q ss_pred             HHHHHHHhcccCCeEEEE
Q 031568           81 NYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~   98 (157)
                      ..++.+.+.|+++|.++.
T Consensus       242 ~~~~~~~~~l~~~G~~v~  259 (338)
T PRK09422        242 AAFNQAVDAVRAGGRVVA  259 (338)
T ss_pred             HHHHHHHHhccCCCEEEE
Confidence            567888899999999885

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=90.89  E-value=2.2  Score=33.71  Aligned_cols=86  Identities=21%  Similarity=0.251  Sum_probs=50.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|...-+....  .+..+.+.++.     .+.+|+||--..   .
T Consensus       198 G~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----~~g~d~vid~~G---~  265 (368)
T TIGR02818       198 GLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT-----DGGVDYSFECIG---N  265 (368)
T ss_pred             HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh-----CCCCCEEEECCC---C
Confidence            4445556665533489999999998887754    45432222211  12333333332     236998874332   2


Q ss_pred             HHHHHHHHhcccCC-eEEEEe
Q 031568           80 CNYHERLMKLLKVG-GIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~   99 (157)
                      ...+..+.+.++++ |.++.-
T Consensus       266 ~~~~~~~~~~~~~~~G~~v~~  286 (368)
T TIGR02818       266 VNVMRAALECCHKGWGESIII  286 (368)
T ss_pred             HHHHHHHHHHhhcCCCeEEEE
Confidence            44577788899886 887753

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.87  E-value=5.1  Score=30.16  Aligned_cols=79  Identities=18%  Similarity=0.139  Sum_probs=53.0

Q ss_pred             HhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEE-EccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568            9 MTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM   87 (157)
Q Consensus         9 ~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~   87 (157)
                      +..+...+|+++|..-..+..      ....++|+..+ ..|+...-+.-.     .+..|++++|-..-....++..+.
T Consensus        97 lLq~gAk~VyavDVG~~Ql~~------kLR~d~rV~~~E~tN~r~l~~~~~-----~~~~d~~v~DvSFISL~~iLp~l~  165 (245)
T COG1189          97 LLQRGAKHVYAVDVGYGQLHW------KLRNDPRVIVLERTNVRYLTPEDF-----TEKPDLIVIDVSFISLKLILPALL  165 (245)
T ss_pred             HHHcCCcEEEEEEccCCccCH------hHhcCCcEEEEecCChhhCCHHHc-----ccCCCeEEEEeehhhHHHHHHHHH
Confidence            335568899999997543321      22234566555 445554433321     357999999987666777888889


Q ss_pred             hcccCCeEEEE
Q 031568           88 KLLKVGGIAVY   98 (157)
Q Consensus        88 ~~L~~gG~iv~   98 (157)
                      .++++++.++.
T Consensus       166 ~l~~~~~~~v~  176 (245)
T COG1189         166 LLLKDGGDLVL  176 (245)
T ss_pred             HhcCCCceEEE
Confidence            99999988875

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=90.81  E-value=0.44  Score=37.33  Aligned_cols=74  Identities=14%  Similarity=0.216  Sum_probs=52.0

Q ss_pred             CcccHHHHHhh--CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH-HHHhhcCCCCCceeEEEEcCC
Q 031568            1 MHLPTKLFMTG--NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         1 ~g~st~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l-~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      +|.|.++.+..  .-+-..+++|++......|.+|+.++++++++.+++-+..+.+ ...... ..+..||++.++++
T Consensus       111 tgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-~~e~~ydFcMcNPP  187 (419)
T KOG2912|consen  111 TGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-ESEIIYDFCMCNPP  187 (419)
T ss_pred             CchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-CccceeeEEecCCc
Confidence            35566665552  2467889999999999999999999999999999988775543 211100 01234888888764

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=90.80  E-value=1.3  Score=33.10  Aligned_cols=72  Identities=15%  Similarity=0.264  Sum_probs=39.1

Q ss_pred             cccHHHHHh----hCCCcEEEEEeCChhH--HHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMT----GNKILQITAIDVNRET--YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~----~~~~~~v~~ve~~~~~--~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |=+|++++.    +..+.+|..||-||..  .+..+...+...+++++.+..++=...+....+. .....||+|++|.
T Consensus        14 GKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~~~d~VlvDl   91 (231)
T PF07015_consen   14 GKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEASGFDFVLVDL   91 (231)
T ss_pred             cHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhcCCCEEEEeC
Confidence            335555433    2358999999988764  3332222222345567777766533333322100 0124599999995

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PF14740 DUF4471: Domain of unknown function (DUF4471)

Probab=90.68  E-value=1  Score=34.82  Aligned_cols=55  Identities=22%  Similarity=0.389  Sum_probs=37.3

Q ss_pred             cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH-HHHhcccCCeEEEEeccc
Q 031568           42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~-~~~~~L~~gG~iv~~~~~  102 (157)
                      +|.|+-.+..+.++.-.+   -.+.||+||+.+..   ...+. .+.+.++|+|+|++++.-
T Consensus       201 kVhFLPld~~~~L~~K~k---y~~~Fd~ifvs~s~---vh~L~p~l~~~~a~~A~LvvEtaK  256 (289)
T PF14740_consen  201 KVHFLPLDSLEKLPHKSK---YQNFFDLIFVSCSM---VHFLKPELFQALAPDAVLVVETAK  256 (289)
T ss_pred             EEEEeCchHHHHHhhHHh---hcCCCCEEEEhhhh---HhhcchHHHHHhCCCCEEEEEcch
Confidence            466776777666655322   25789999998752   22222 356788999999999863

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=90.58  E-value=0.92  Score=30.90  Aligned_cols=42  Identities=21%  Similarity=0.373  Sum_probs=33.7

Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHcC--CCCcEEEEEccHHHH
Q 031568           12 NKILQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSV   53 (157)
Q Consensus        12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~   53 (157)
                      .++.+|++||.+++..+.+++..++.+  +..++++..++..+.
T Consensus        51 ~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   94 (141)
T PF13679_consen   51 SPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE   94 (141)
T ss_pred             CCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence            379999999999999999999998887  445677776665543

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=90.47  E-value=2.4  Score=32.61  Aligned_cols=82  Identities=11%  Similarity=0.107  Sum_probs=47.9

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE   84 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~   84 (157)
                      +..+|+. .+.++++++.+++..+.+++    .|.+.-+.....+..+.+..+.    ....+|+||-....    ....
T Consensus       160 a~q~a~~-~G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~~~d~vid~~g~----~~~~  226 (324)
T cd08291         160 LVRLCKA-DGIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKLNATIFFDAVGG----GLTG  226 (324)
T ss_pred             HHHHHHH-cCCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCCCCcEEEECCCc----HHHH
Confidence            3334444 47789999999988777765    4553223222334444444332    13469988733221    2234


Q ss_pred             HHHhcccCCeEEEEe
Q 031568           85 RLMKLLKVGGIAVYD   99 (157)
Q Consensus        85 ~~~~~L~~gG~iv~~   99 (157)
                      ...+.++++|.++.-
T Consensus       227 ~~~~~l~~~G~~v~~  241 (324)
T cd08291         227 QILLAMPYGSTLYVY  241 (324)
T ss_pred             HHHHhhCCCCEEEEE
Confidence            557788999998763

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>TIGR00478 tly hemolysin TlyA family protein

Probab=90.34  E-value=0.82  Score=34.09  Aligned_cols=80  Identities=13%  Similarity=0.080  Sum_probs=42.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHH-HHHHHHHcCCCCcEE-EEEccHHHHHH-HHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEI-GLPIIKKAGVDHKIN-FIESEALSVLD-QLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~-a~~~~~~~~~~~~i~-~~~~d~~~~l~-~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |.-|..++.. +..+|+++|+++.++.. .+++       +++. +-..|+..... .+.   ..-..+|++|+..    
T Consensus        87 G~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~---~d~~~~DvsfiS~----  151 (228)
T TIGR00478        87 GGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIF---PDFATFDVSFISL----  151 (228)
T ss_pred             CHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcC---CCceeeeEEEeeh----
Confidence            4445545543 56799999999977654 2222       1222 22222221100 000   0123677777653    


Q ss_pred             cHHHHHHHHhcccCCeEEEE
Q 031568           79 YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~   98 (157)
                       ...+..+.++|++ |.+++
T Consensus       152 -~~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       152 -ISILPELDLLLNP-NDLTL  169 (228)
T ss_pred             -HhHHHHHHHHhCc-CeEEE
Confidence             3357778888888 76664

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.31  E-value=3.7  Score=31.25  Aligned_cols=86  Identities=16%  Similarity=0.141  Sum_probs=51.3

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHH-------HHcCC-C--------CcEEEEEccHHHHHHHHhhcCCCC
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPII-------KKAGV-D--------HKINFIESEALSVLDQLLKYSENE   64 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~-------~~~~~-~--------~~i~~~~~d~~~~l~~~~~~~~~~   64 (157)
                      ||.+.+..++.. +.+|+.+|++++.++.+++.+       .+.|. .        .++++ ..|..+    +       
T Consensus        14 mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~----~-------   80 (282)
T PRK05808         14 MGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD----L-------   80 (282)
T ss_pred             HHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH----h-------
Confidence            455555555443 669999999999987665432       22231 1        12332 233221    1       


Q ss_pred             CceeEEEEcCCCcc--cHHHHHHHHhcccCCeEEEEe
Q 031568           65 GSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        65 ~~fD~I~iD~~~~~--~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      +..|+|+.-.....  -.++++.+.+.++++.+++.+
T Consensus        81 ~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~  117 (282)
T PRK05808         81 KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATN  117 (282)
T ss_pred             ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence            35799998754322  246788888889998888554

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=90.12  E-value=2.1  Score=34.08  Aligned_cols=90  Identities=18%  Similarity=0.145  Sum_probs=53.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc-HHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSENEGSFDYAFVDADK----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~l~~~~~~~~~~~~fD~I~iD~~~----   76 (157)
                      |..+..++...+..++++++.+++..+.+++..   +. ..+.....+ ..+.+..+.    ....+|+||--...    
T Consensus       197 G~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~----~~~~~D~vld~vg~~~~~  268 (386)
T cd08283         197 GLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT----GGRGPDVCIDAVGMEAHG  268 (386)
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc----CCCCCCEEEECCCCcccc
Confidence            334445566554457999999999988887742   22 123223332 333343332    13469988743211    


Q ss_pred             --------------cccHHHHHHHHhcccCCeEEEEe
Q 031568           77 --------------DNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        77 --------------~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                                    ......++.+.+.++++|.++.-
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  305 (386)
T cd08283         269 SPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII  305 (386)
T ss_pred             cccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence                          11244678888999999999864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=89.79  E-value=3  Score=32.83  Aligned_cols=85  Identities=22%  Similarity=0.358  Sum_probs=49.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc--cHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |..++.+|+......+++++.+++..+.+++    .|...-+.....  +..+.+..+.     .+.+|+|+ |..  ..
T Consensus       196 G~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~-----~~~~d~vi-d~~--g~  263 (365)
T cd05279         196 GLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT-----DGGVDYAF-EVI--GS  263 (365)
T ss_pred             HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh-----CCCCcEEE-ECC--CC
Confidence            4444555555543458888888887776643    444322222222  3333333332     34699988 432  12


Q ss_pred             HHHHHHHHhccc-CCeEEEE
Q 031568           80 CNYHERLMKLLK-VGGIAVY   98 (157)
Q Consensus        80 ~~~~~~~~~~L~-~gG~iv~   98 (157)
                      ...+..+.+.|+ ++|.++.
T Consensus       264 ~~~~~~~~~~l~~~~G~~v~  283 (365)
T cd05279         264 ADTLKQALDATRLGGGTSVV  283 (365)
T ss_pred             HHHHHHHHHHhccCCCEEEE
Confidence            346777888899 9999885

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=89.75  E-value=0.37  Score=38.52  Aligned_cols=69  Identities=17%  Similarity=0.130  Sum_probs=54.4

Q ss_pred             cccHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568            2 HLPTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus         2 g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      |++|.-+++ ..+.+++.++|.++..++..++.+...|.+ .++...+|+... ....    .-...-.|++|++.
T Consensus       225 g~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t-~~~~----~~~~v~~iL~Dpsc  294 (413)
T KOG2360|consen  225 GNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNT-ATPE----KFRDVTYILVDPSC  294 (413)
T ss_pred             ccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCC-CCcc----cccceeEEEeCCCC
Confidence            788988888 445999999999999999999999999986 677789998875 2211    12457788888753

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=89.74  E-value=4.1  Score=31.13  Aligned_cols=77  Identities=12%  Similarity=0.075  Sum_probs=48.3

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM   87 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~   87 (157)
                      +|+. -+.+|+++..+++..+.+++    .|.+.-+.....+..+.+..+.     .+.+|+|| |+..   ...++.+.
T Consensus       163 lA~~-~G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~-----~~gvd~vl-d~~g---~~~~~~~~  228 (329)
T cd08294         163 IAKI-KGCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAA-----PDGIDCYF-DNVG---GEFSSTVL  228 (329)
T ss_pred             HHHH-cCCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHC-----CCCcEEEE-ECCC---HHHHHHHH
Confidence            4444 47789999988888777655    4553222222334444444332     34699887 4422   24567888


Q ss_pred             hcccCCeEEEE
Q 031568           88 KLLKVGGIAVY   98 (157)
Q Consensus        88 ~~L~~gG~iv~   98 (157)
                      +.|+++|.++.
T Consensus       229 ~~l~~~G~iv~  239 (329)
T cd08294         229 SHMNDFGRVAV  239 (329)
T ss_pred             HhhccCCEEEE
Confidence            99999999985

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=89.65  E-value=2.8  Score=27.05  Aligned_cols=74  Identities=16%  Similarity=0.047  Sum_probs=47.6

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL   90 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L   90 (157)
                      .+.+|+.+|.+++.++.+++    .    .+.++.||+.+.  +.+..     -++.|.|++..+....--..-...+.+
T Consensus        20 ~~~~vvvid~d~~~~~~~~~----~----~~~~i~gd~~~~~~l~~a~-----i~~a~~vv~~~~~d~~n~~~~~~~r~~   86 (116)
T PF02254_consen   20 GGIDVVVIDRDPERVEELRE----E----GVEVIYGDATDPEVLERAG-----IEKADAVVILTDDDEENLLIALLAREL   86 (116)
T ss_dssp             TTSEEEEEESSHHHHHHHHH----T----TSEEEES-TTSHHHHHHTT-----GGCESEEEEESSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCcHHHHHHHh----c----ccccccccchhhhHHhhcC-----ccccCEEEEccCCHHHHHHHHHHHHHH
Confidence            34599999999999877755    2    266899998754  44431     367999998865432222233334667


Q ss_pred             cCCeEEEEe
Q 031568           91 KVGGIAVYD   99 (157)
Q Consensus        91 ~~gG~iv~~   99 (157)
                      .|...+++.
T Consensus        87 ~~~~~ii~~   95 (116)
T PF02254_consen   87 NPDIRIIAR   95 (116)
T ss_dssp             TTTSEEEEE
T ss_pred             CCCCeEEEE
Confidence            777777763

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.60  E-value=10  Score=30.91  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=52.7

Q ss_pred             cEEEEEe-CChhHHHHHHHHHHHcCCCCcEEEEEccHHHH----HHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHH--
Q 031568           15 LQITAID-VNRETYEIGLPIIKKAGVDHKINFIESEALSV----LDQLLKYSENEGSFDYAFVDADKDN--YCNYHER--   85 (157)
Q Consensus        15 ~~v~~ve-~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~--   85 (157)
                      .-++|-| ..+.+.++.++|..+.++.--......|...+    +..++     .+.||+|++|..-+.  -..+|++  
T Consensus       132 ~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK-----ke~fdvIIvDTSGRh~qe~sLfeEM~  206 (483)
T KOG0780|consen  132 VALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK-----KENFDVIIVDTSGRHKQEASLFEEMK  206 (483)
T ss_pred             eeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH-----hcCCcEEEEeCCCchhhhHHHHHHHH
Confidence            3456666 46889999999999887643334444554443    34443     467999999985332  2334554  


Q ss_pred             -HHhcccCCeEEEEec
Q 031568           86 -LMKLLKVGGIAVYDN  100 (157)
Q Consensus        86 -~~~~L~~gG~iv~~~  100 (157)
                       +.+.++|+-+|.+=+
T Consensus       207 ~v~~ai~Pd~vi~VmD  222 (483)
T KOG0780|consen  207 QVSKAIKPDEIIFVMD  222 (483)
T ss_pred             HHHhhcCCCeEEEEEe
Confidence             457899998876643

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=89.50  E-value=3  Score=33.56  Aligned_cols=30  Identities=13%  Similarity=0.164  Sum_probs=24.1

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLP   32 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~   32 (157)
                      ||+.++.+++.  +-+|+++|++++.++.+++
T Consensus        11 vGl~~A~~lA~--G~~VigvD~d~~kv~~l~~   40 (388)
T PRK15057         11 VGLSNGLLIAQ--NHEVVALDILPSRVAMLND   40 (388)
T ss_pred             HHHHHHHHHHh--CCcEEEEECCHHHHHHHHc
Confidence            67777766553  6789999999999988866

>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO)

Probab=89.37  E-value=0.54  Score=29.92  Aligned_cols=76  Identities=24%  Similarity=0.267  Sum_probs=39.5

Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEecccCC--ccccCCCCC---CCCCcccchHHHHHHHHHHhhcCCC
Q 031568           64 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWG--GTVAVPEEQ---VPDHFRGSSRQAILDLNRSLADDPR  138 (157)
Q Consensus        64 ~~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~  138 (157)
                      +..||++++|+...-.++.+..+...++-||+++.=-.-+.  ....++...   .++.. .....-++.|.+.+.++++
T Consensus         9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~-~~~~~F~~rf~~~L~~~~~   87 (92)
T PF08351_consen    9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYT-DVTPRFIRRFIRSLQSDPG   87 (92)
T ss_dssp             T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS--B--HHHHHHHHHHHCCSTT
T ss_pred             CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCC-cccHHHHHHHHHHHHHCcC
Confidence            46799999999777778899999999999999987311110  000000000   00111 1134567888888888887


Q ss_pred             ee
Q 031568          139 VQ  140 (157)
Q Consensus       139 ~~  140 (157)
                      +.
T Consensus        88 i~   89 (92)
T PF08351_consen   88 II   89 (92)
T ss_dssp             S-
T ss_pred             Cc
Confidence            54

; PDB: 2ZPA_B.

>PRK11524 putative methyltransferase; Provisional

Probab=89.34  E-value=0.65  Score=35.61  Aligned_cols=36  Identities=17%  Similarity=0.109  Sum_probs=31.3

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK   36 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~   36 (157)
                      ||=.|+.+|+..-+-+.+++|++++.++.|++.++.
T Consensus       217 ~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        217 AGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            677788888876799999999999999999998864

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=89.19  E-value=3.9  Score=33.98  Aligned_cols=90  Identities=22%  Similarity=0.369  Sum_probs=61.3

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----------------
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----------------   77 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----------------   77 (157)
                      ...+++.|+++....+|+-|+--.|++..+.+.++|..........  ...+.||+|+.+++..                
T Consensus       214 ~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~--~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~  291 (489)
T COG0286         214 EIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDK--DDKGKFDFVIANPPFSGKGWGGDLLESEQDER  291 (489)
T ss_pred             ceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCccccc--CCccceeEEEeCCCCCcccccccccccccccc
Confidence            3779999999999999999998888864466777776544221000  0136799998765311                


Q ss_pred             ------------ccHHHHHHHHhcccCCe---EEEEecccCCc
Q 031568           78 ------------NYCNYHERLMKLLKVGG---IAVYDNTLWGG  105 (157)
Q Consensus        78 ------------~~~~~~~~~~~~L~~gG---~iv~~~~~~~~  105 (157)
                                  .+..+++.+...|+|||   +++.++++++|
T Consensus       292 ~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~  334 (489)
T COG0286         292 FFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRG  334 (489)
T ss_pred             ccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCC
Confidence                        12457778889999865   55556776655

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=89.03  E-value=2.5  Score=31.83  Aligned_cols=67  Identities=18%  Similarity=0.293  Sum_probs=42.8

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHH------HHHHHHhhcCCCCCceeEEEEcCCCc-----ccHHH--
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL------SVLDQLLKYSENEGSFDYAFVDADKD-----NYCNY--   82 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~------~~l~~~~~~~~~~~~fD~I~iD~~~~-----~~~~~--   82 (157)
                      +|++||+.+-+           .+. .|.-+++|+.      .++..+.     .++-|+|++|+.+.     ...+|  
T Consensus        76 kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii~hfg-----gekAdlVvcDGAPDvTGlHd~DEy~Q  138 (294)
T KOG1099|consen   76 KIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAIIEHFG-----GEKADLVVCDGAPDVTGLHDLDEYVQ  138 (294)
T ss_pred             cEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHHHHhC-----CCCccEEEeCCCCCccccccHHHHHH
Confidence            49999987643           332 4556667643      3455552     46899999998543     22332  


Q ss_pred             -------HHHHHhcccCCeEEEEe
Q 031568           83 -------HERLMKLLKVGGIAVYD   99 (157)
Q Consensus        83 -------~~~~~~~L~~gG~iv~~   99 (157)
                             +......|+|||.+|..
T Consensus       139 ~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen  139 AQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             HHHHHHHHHHHhheecCCCeeehh
Confidence                   22334689999999974

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=89.03  E-value=0.48  Score=38.45  Aligned_cols=46  Identities=26%  Similarity=0.220  Sum_probs=40.9

Q ss_pred             hhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCc-EEEEEccHHHHHH
Q 031568           10 TGNKILQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD   55 (157)
Q Consensus        10 ~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~l~   55 (157)
                      +...+.+|++-|.+|++++..+.|+..+.+.+. |+++..|+.+++.
T Consensus       267 a~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  267 AAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             hhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence            344679999999999999999999999988766 9999999999884

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=88.95  E-value=1.9  Score=30.55  Aligned_cols=80  Identities=18%  Similarity=0.258  Sum_probs=44.9

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEE-EEEccHHHHHHHHhhcCCCCCceeEEEEcC------------
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFDYAFVDA------------   74 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~------------   74 (157)
                      +|.++..++|++||.++--++  .+      ..+++. +...   ++.....++   .++||++.+-+            
T Consensus        18 ~aL~~GA~~iltveyn~L~i~--~~------~~dr~ssi~p~---df~~~~~~y---~~~fD~~as~~siEh~GLGRYGD   83 (177)
T PF03269_consen   18 MALQHGAAKILTVEYNKLEIQ--EE------FRDRLSSILPV---DFAKNWQKY---AGSFDFAASFSSIEHFGLGRYGD   83 (177)
T ss_pred             HHHHcCCceEEEEeecccccC--cc------cccccccccHH---HHHHHHHHh---hccchhhheechhccccccccCC
Confidence            455667889999998853221  11      112322 2222   333333222   56899986522            


Q ss_pred             --CCcccHHHHHHHHhcccCCeEEEEecc
Q 031568           75 --DKDNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        75 --~~~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                        +.......+..+...||+||.+...-.
T Consensus        84 Pidp~Gdl~~m~~i~~vLK~GG~L~l~vP  112 (177)
T PF03269_consen   84 PIDPIGDLRAMAKIKCVLKPGGLLFLGVP  112 (177)
T ss_pred             CCCccccHHHHHHHHHhhccCCeEEEEee
Confidence              112234556677789999999987543

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=88.77  E-value=4.1  Score=32.04  Aligned_cols=87  Identities=18%  Similarity=0.248  Sum_probs=50.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|...-+....  .+..+.+..+.     .+.+|+++ |+.  ..
T Consensus       200 G~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----~~~~d~vi-d~~--G~  267 (369)
T cd08301         200 GLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT-----GGGVDYSF-ECT--GN  267 (369)
T ss_pred             HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh-----CCCCCEEE-ECC--CC
Confidence            4455556665543489999999988877644    45432222221  12333344332     33699776 432  12


Q ss_pred             HHHHHHHHhcccCC-eEEEEec
Q 031568           80 CNYHERLMKLLKVG-GIAVYDN  100 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~~  100 (157)
                      ...+..+.+.+++| |.++.-.
T Consensus       268 ~~~~~~~~~~~~~~~g~~v~~g  289 (369)
T cd08301         268 IDAMISAFECVHDGWGVTVLLG  289 (369)
T ss_pred             hHHHHHHHHHhhcCCCEEEEEC
Confidence            44567778889996 8887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=88.63  E-value=0.26  Score=38.46  Aligned_cols=56  Identities=25%  Similarity=0.433  Sum_probs=38.5

Q ss_pred             cEEEEEccHHHHHHHHhhcCCCCCceeEEE----EcCCCcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           42 KINFIESEALSVLDQLLKYSENEGSFDYAF----VDADKDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~----iD~~~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ...+-.||..+..+.-.    ..+.||.|+    ||... +..++++.+...|+|||++|--..+
T Consensus       239 ~fsicaGDF~evy~~s~----~~~~~d~VvTcfFIDTa~-NileYi~tI~~iLk~GGvWiNlGPL  298 (369)
T KOG2798|consen  239 SFSICAGDFLEVYGTSS----GAGSYDVVVTCFFIDTAH-NILEYIDTIYKILKPGGVWINLGPL  298 (369)
T ss_pred             CccccccceeEEecCcC----CCCccceEEEEEEeechH-HHHHHHHHHHHhccCCcEEEeccce
Confidence            34455677776654311    134799994    67653 6788999999999999999864443

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.40  E-value=4.3  Score=29.71  Aligned_cols=85  Identities=21%  Similarity=0.251  Sum_probs=49.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..+++.. +.+|++++.+++..+.+++    .+...-+.....+..+.+. ..    ..+.+|+++.....   ..
T Consensus       147 G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~~----~~~~~d~vi~~~~~---~~  213 (271)
T cd05188         147 GLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-LT----GGGGADVVIDAVGG---PE  213 (271)
T ss_pred             HHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-Hh----cCCCCCEEEECCCC---HH
Confidence            33444455543 5899999999887776644    2322112222222322222 11    24579999865432   24


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .+..+.+.++++|.++.-
T Consensus       214 ~~~~~~~~l~~~G~~v~~  231 (271)
T cd05188         214 TLAQALRLLRPGGRIVVV  231 (271)
T ss_pred             HHHHHHHhcccCCEEEEE
Confidence            567778899999998863

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=88.21  E-value=9.1  Score=30.22  Aligned_cols=81  Identities=15%  Similarity=0.136  Sum_probs=55.4

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc---CCCcccHHHHHHHHhc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD---ADKDNYCNYHERLMKL   89 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD---~~~~~~~~~~~~~~~~   89 (157)
                      -++.|+-+|+|.+.+.+....+   +  .|++....+...+-...       .+.|+++--   +......-..++..+.
T Consensus       190 lgA~Vtild~n~~rl~~ldd~f---~--~rv~~~~st~~~iee~v-------~~aDlvIgaVLIpgakaPkLvt~e~vk~  257 (371)
T COG0686         190 LGADVTILDLNIDRLRQLDDLF---G--GRVHTLYSTPSNIEEAV-------KKADLVIGAVLIPGAKAPKLVTREMVKQ  257 (371)
T ss_pred             cCCeeEEEecCHHHHhhhhHhh---C--ceeEEEEcCHHHHHHHh-------hhccEEEEEEEecCCCCceehhHHHHHh
Confidence            4899999999999887766544   2  47889988888765544       468888632   2222233356777889


Q ss_pred             ccCCeEEEEecccCCc
Q 031568           90 LKVGGIAVYDNTLWGG  105 (157)
Q Consensus        90 L~~gG~iv~~~~~~~~  105 (157)
                      ++||++||=-.+-.+|
T Consensus       258 MkpGsVivDVAiDqGG  273 (371)
T COG0686         258 MKPGSVIVDVAIDQGG  273 (371)
T ss_pred             cCCCcEEEEEEEcCCC
Confidence            9999999754443433

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=88.06  E-value=5.4  Score=31.38  Aligned_cols=86  Identities=20%  Similarity=0.294  Sum_probs=49.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|...-+....  .+..+.+..+.     ...+|+||--..   .
T Consensus       197 G~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~-----~~g~d~vid~~g---~  264 (365)
T cd08277         197 GLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT-----GGGVDYSFECTG---N  264 (365)
T ss_pred             HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh-----CCCCCEEEECCC---C
Confidence            4445556665533489999999888777744    45432122211  12233344332     246998884322   2


Q ss_pred             HHHHHHHHhcccCC-eEEEEe
Q 031568           80 CNYHERLMKLLKVG-GIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~   99 (157)
                      ...+..+.+.++++ |.++.-
T Consensus       265 ~~~~~~~~~~l~~~~G~~v~~  285 (365)
T cd08277         265 ADLMNEALESTKLGWGVSVVV  285 (365)
T ss_pred             hHHHHHHHHhcccCCCEEEEE
Confidence            34567788899885 888763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=87.98  E-value=1.7  Score=33.45  Aligned_cols=74  Identities=11%  Similarity=0.036  Sum_probs=45.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++......|+++|.+++.++.|++.    .      ++  |..+.   .      ...+|+|| |+.  ....
T Consensus       157 G~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~------~~g~Dvvi-d~~--G~~~  212 (308)
T TIGR01202       157 GRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P------RRDYRAIY-DAS--GDPS  212 (308)
T ss_pred             HHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c------CCCCCEEE-ECC--CCHH
Confidence            55566666665444577889888776665431    1      11  11110   1      34699887 432  2244


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.++++|.++.-
T Consensus       213 ~~~~~~~~l~~~G~iv~~  230 (308)
T TIGR01202       213 LIDTLVRRLAKGGEIVLA  230 (308)
T ss_pred             HHHHHHHhhhcCcEEEEE
Confidence            678889999999999863

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=87.96  E-value=4.9  Score=28.33  Aligned_cols=34  Identities=29%  Similarity=0.370  Sum_probs=21.7

Q ss_pred             CCceeEEEEcCCCcccHHHH----HHHHhcccCCeEEEE
Q 031568           64 EGSFDYAFVDADKDNYCNYH----ERLMKLLKVGGIAVY   98 (157)
Q Consensus        64 ~~~fD~I~iD~~~~~~~~~~----~~~~~~L~~gG~iv~   98 (157)
                      .++||+|++|++-- ..+.+    +.+.-++++++.++.
T Consensus        84 ~~~~d~vv~DPPFl-~~ec~~k~a~ti~~L~k~~~kii~  121 (162)
T PF10237_consen   84 KGKFDVVVIDPPFL-SEECLTKTAETIRLLLKPGGKIIL  121 (162)
T ss_pred             CCCceEEEECCCCC-CHHHHHHHHHHHHHHhCccceEEE
Confidence            46899999999752 23333    333345677677665

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=87.96  E-value=6.5  Score=30.44  Aligned_cols=79  Identities=14%  Similarity=0.132  Sum_probs=48.3

Q ss_pred             HHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHH
Q 031568            7 LFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER   85 (157)
Q Consensus         7 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~   85 (157)
                      .+|+. -+.+|+++..+++..+.+++.   .|.+.-+..... +..+.+....     .+.+|+|| |+.-   ...+..
T Consensus       170 qlAk~-~G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~-----~~gvd~v~-d~~g---~~~~~~  236 (338)
T cd08295         170 QLAKL-KGCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF-----PNGIDIYF-DNVG---GKMLDA  236 (338)
T ss_pred             HHHHH-cCCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC-----CCCcEEEE-ECCC---HHHHHH
Confidence            34444 477899999888887766552   355322221112 4444444331     34699988 4422   245778


Q ss_pred             HHhcccCCeEEEE
Q 031568           86 LMKLLKVGGIAVY   98 (157)
Q Consensus        86 ~~~~L~~gG~iv~   98 (157)
                      +.+.|+++|.++.
T Consensus       237 ~~~~l~~~G~iv~  249 (338)
T cd08295         237 VLLNMNLHGRIAA  249 (338)
T ss_pred             HHHHhccCcEEEE
Confidence            8899999999985

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=87.90  E-value=4.5  Score=31.21  Aligned_cols=80  Identities=20%  Similarity=0.225  Sum_probs=45.8

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM   87 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~   87 (157)
                      +|+.....++++++.+++..+.+++    .|...-+.....+..+.+..+.    ..+.+|++| |+..  ....+..+.
T Consensus       186 lak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~~~~~d~vl-d~~g--~~~~~~~~~  254 (347)
T cd05278         186 GARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----GGRGVDCVI-EAVG--FEETFEQAV  254 (347)
T ss_pred             HHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----CCCCCcEEE-EccC--CHHHHHHHH
Confidence            4444432478888888777666554    3432112222333434444332    235699887 4321  124677888


Q ss_pred             hcccCCeEEEE
Q 031568           88 KLLKVGGIAVY   98 (157)
Q Consensus        88 ~~L~~gG~iv~   98 (157)
                      +.|+++|.++.
T Consensus       255 ~~l~~~G~~v~  265 (347)
T cd05278         255 KVVRPGGTIAN  265 (347)
T ss_pred             HHhhcCCEEEE
Confidence            99999999885

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=87.89  E-value=1.2  Score=36.50  Aligned_cols=45  Identities=24%  Similarity=0.362  Sum_probs=37.5

Q ss_pred             HHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH
Q 031568            8 FMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   52 (157)
Q Consensus         8 l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~   52 (157)
                      +++ +..+-.|+++|.-..|.+.|++-..++|.+++|++|..-..+
T Consensus        82 mMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   82 MMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             HHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            444 435668999999999999999999999999999998765544

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=87.35  E-value=6.5  Score=30.79  Aligned_cols=79  Identities=20%  Similarity=0.235  Sum_probs=51.4

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM   87 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~   87 (157)
                      ||++. +++++++-.+++..+.    +.+.|.+.-+.+...|..+.+.++.    ....+|+||---    -.+.+....
T Consensus       162 lAk~~-G~~~v~~~~s~~k~~~----~~~lGAd~vi~y~~~~~~~~v~~~t----~g~gvDvv~D~v----G~~~~~~~l  228 (326)
T COG0604         162 LAKAL-GATVVAVVSSSEKLEL----LKELGADHVINYREEDFVEQVRELT----GGKGVDVVLDTV----GGDTFAASL  228 (326)
T ss_pred             HHHHc-CCcEEEEecCHHHHHH----HHhcCCCEEEcCCcccHHHHHHHHc----CCCCceEEEECC----CHHHHHHHH
Confidence            55554 3366666666655543    3445655456667777777776663    234699998432    245677788


Q ss_pred             hcccCCeEEEEe
Q 031568           88 KLLKVGGIAVYD   99 (157)
Q Consensus        88 ~~L~~gG~iv~~   99 (157)
                      ..|+++|.++.-
T Consensus       229 ~~l~~~G~lv~i  240 (326)
T COG0604         229 AALAPGGRLVSI  240 (326)
T ss_pred             HHhccCCEEEEE
Confidence            999999999873

>cd08230 glucose_DH Glucose dehydrogenase

Probab=87.33  E-value=3.2  Score=32.44  Aligned_cols=82  Identities=13%  Similarity=0.150  Sum_probs=47.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeC---ChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTGNKILQITAIDV---NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~---~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |+.+..+++.. +.+|++++.   +++..+.++    +.|.. .+.....+..+ .. .      .+.+|+||--..   
T Consensus       185 G~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~-~~-~------~~~~d~vid~~g---  247 (355)
T cd08230         185 GLLAALLLRLR-GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAE-VK-L------VGEFDLIIEATG---  247 (355)
T ss_pred             HHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhh-hh-h------cCCCCEEEECcC---
Confidence            44455555554 568999987   566666554    34543 22211122222 11 1      346998875443   


Q ss_pred             cHHHHHHHHhcccCCeEEEEec
Q 031568           79 YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ....+..+.+.|+++|.++.-.
T Consensus       248 ~~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         248 VPPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             CHHHHHHHHHHccCCcEEEEEe
Confidence            2346788889999999998643

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK10840 transcriptional regulator RcsB; Provisional

Probab=87.20  E-value=9  Score=27.52  Aligned_cols=79  Identities=6%  Similarity=-0.086  Sum_probs=48.9

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-----cHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----YCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-----~~~~~~~~~~   88 (157)
                      +.+|..+|-++......+..++..+.. .+-....+..+.+..+.     ...+|+|++|...+.     -.+.++.+.+
T Consensus         3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~~~~~~~-----~~~~DlvllD~~l~~~~~~~g~~~~~~l~~   76 (216)
T PRK10840          3 NMNVIIADDHPIVLFGIRKSLEQIEWV-NVVGEFEDSTALINNLP-----KLDAHVLITDLSMPGDKYGDGITLIKYIKR   76 (216)
T ss_pred             ceEEEEECCcHHHHHHHHHHHhcCCCC-EEEEEECCHHHHHHHHH-----hCCCCEEEEeCcCCCCCCCCHHHHHHHHHH
Confidence            468999999999998888888765421 22334566777666553     356999999964332     3445555544


Q ss_pred             cccCCeEEEE
Q 031568           89 LLKVGGIAVY   98 (157)
Q Consensus        89 ~L~~gG~iv~   98 (157)
                      ....-.++++
T Consensus        77 ~~~~~~iIvl   86 (216)
T PRK10840         77 HFPSLSIIVL   86 (216)
T ss_pred             HCCCCcEEEE
Confidence            3222344444

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=87.19  E-value=1.4  Score=30.15  Aligned_cols=28  Identities=11%  Similarity=-0.026  Sum_probs=19.3

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHH--HHHcC
Q 031568           11 GNKILQITAIDVNRETYEIGLPI--IKKAG   38 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~--~~~~~   38 (157)
                      ..++++|+++|.+|..++..+++  +..++
T Consensus        20 ~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~   49 (167)
T PF05050_consen   20 CGPGGRVHAFEPNPSNFEKLKRNLNLALND   49 (167)
T ss_dssp             TS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred             cCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence            55899999999999999999999  65553

; PDB: 2PY6_A.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=87.15  E-value=5.2  Score=32.10  Aligned_cols=91  Identities=15%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |+.++.+|+......++++|.+++..+.|++    .|.. .+.... .+..+.+..+.    ....+|+||--...+.  
T Consensus       198 G~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~----~~~g~Dvvid~~G~~~~~  268 (393)
T TIGR02819       198 GLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQIL----GEPEVDCAVDCVGFEARG  268 (393)
T ss_pred             HHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHc----CCCCCcEEEECCCCcccc
Confidence            4455556665544446677888888877765    3542 221111 23444444332    1346998874333211  


Q ss_pred             ---------cHHHHHHHHhcccCCeEEEEecc
Q 031568           79 ---------YCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        79 ---------~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                               ....++.+.+++++||.++.-..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       269 HGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             ccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence                     12478888999999999997443

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=87.07  E-value=1.3  Score=32.38  Aligned_cols=75  Identities=16%  Similarity=0.142  Sum_probs=51.0

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccHHHHHHHH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLM   87 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~~~~~~~~   87 (157)
                      ......|++.|++|-....++-|.+.+|+  .|.+...|..-  +        +..||+|+..-   ++..-...+. +.
T Consensus        99 ~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~--------~~~~Dl~LagDlfy~~~~a~~l~~-~~  165 (218)
T COG3897          99 RAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--S--------PPAFDLLLAGDLFYNHTEADRLIP-WK  165 (218)
T ss_pred             HhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--C--------CcceeEEEeeceecCchHHHHHHH-HH
Confidence            44577899999999999999999999997  48888888764  1        56799998632   2222233344 44


Q ss_pred             hcccCCeEEEE
Q 031568           88 KLLKVGGIAVY   98 (157)
Q Consensus        88 ~~L~~gG~iv~   98 (157)
                      ..|+..|..|+
T Consensus       166 ~~l~~~g~~vl  176 (218)
T COG3897         166 DRLAEAGAAVL  176 (218)
T ss_pred             HHHHhCCCEEE
Confidence            44444444433

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=86.87  E-value=0.87  Score=34.78  Aligned_cols=52  Identities=19%  Similarity=0.300  Sum_probs=37.4

Q ss_pred             EEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           44 NFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        44 ~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      +++.+|..+ +| +     ++++.|+++..-.  -.++.+++.++.+.|++||.+-+-.+.
T Consensus       213 ~V~~cDm~~-vP-l-----~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  213 RVIACDMRN-VP-L-----EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK  266 (325)
T ss_pred             ceeeccccC-Cc-C-----ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence            456777766 33 1     3677888776432  236788999999999999999887664

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.73  E-value=5.2  Score=30.58  Aligned_cols=86  Identities=15%  Similarity=0.136  Sum_probs=50.1

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--------CCC---------CcEEEEEccHHHHHHHHhhcCCC
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--------GVD---------HKINFIESEALSVLDQLLKYSEN   63 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--------~~~---------~~i~~~~~d~~~~l~~~~~~~~~   63 (157)
                      ||.+.+..++. .+.+|+.+|.+++.++.+++.+++.        ++.         .++++ ..|..+.+         
T Consensus        14 mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~---------   82 (287)
T PRK08293         14 LGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV---------   82 (287)
T ss_pred             HHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh---------
Confidence            45444444433 4679999999999998887764321        111         13332 23433322         


Q ss_pred             CCceeEEEEcCCCc--ccHHHHHHHHhcccCCeEEEE
Q 031568           64 EGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        64 ~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~gG~iv~   98 (157)
                       ..-|+|+.-.+..  ....+++.+.+.++++.+|+.
T Consensus        83 -~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s  118 (287)
T PRK08293         83 -KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT  118 (287)
T ss_pred             -cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence             3468888765422  234567777777777776644

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=86.67  E-value=1.2  Score=35.26  Aligned_cols=74  Identities=12%  Similarity=0.105  Sum_probs=48.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |-.|-.|+..  +.+|++||..+-.     ..+.   -+++|+.+.+|...+.+.       .+.+|++++|... ....
T Consensus       223 GGWT~~L~~r--G~~V~AVD~g~l~-----~~L~---~~~~V~h~~~d~fr~~p~-------~~~vDwvVcDmve-~P~r  284 (357)
T PRK11760        223 GGWTYQLVRR--GMFVTAVDNGPMA-----QSLM---DTGQVEHLRADGFKFRPP-------RKNVDWLVCDMVE-KPAR  284 (357)
T ss_pred             cHHHHHHHHc--CCEEEEEechhcC-----Hhhh---CCCCEEEEeccCcccCCC-------CCCCCEEEEeccc-CHHH
Confidence            3345555544  6699999955421     2222   235899999999887642       4579999999853 2345


Q ss_pred             HHHHHHhcccCC
Q 031568           82 YHERLMKLLKVG   93 (157)
Q Consensus        82 ~~~~~~~~L~~g   93 (157)
                      ..+.+.++|..|
T Consensus       285 va~lm~~Wl~~g  296 (357)
T PRK11760        285 VAELMAQWLVNG  296 (357)
T ss_pred             HHHHHHHHHhcC
Confidence            566666777666

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=86.51  E-value=2.1  Score=30.58  Aligned_cols=88  Identities=14%  Similarity=0.107  Sum_probs=51.8

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc-------CC-C--------CcEEEEEccHHHHHHHHhhcCCCC
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA-------GV-D--------HKINFIESEALSVLDQLLKYSENE   64 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-------~~-~--------~~i~~~~~d~~~~l~~~~~~~~~~   64 (157)
                      ||-+-+.+++.. +.+|+.+|.+++.++.+++.+++.       +. .        .++++. .|..+.          .
T Consensus        10 mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~----------~   77 (180)
T PF02737_consen   10 MGRGIAALFARA-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA----------V   77 (180)
T ss_dssp             HHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG----------C
T ss_pred             HHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH----------h
Confidence            455555555554 899999999999999988877651       11 1        123322 232221          2


Q ss_pred             CceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEecc
Q 031568           65 GSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        65 ~~fD~I~iD~~--~~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                       ..|+|+=-..  .+.-.++|..+.+.+.|+.+|..+..
T Consensus        78 -~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTS  115 (180)
T PF02737_consen   78 -DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTS  115 (180)
T ss_dssp             -TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred             -hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence             5788874322  11235678888889999999877543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK09028 cystathionine beta-lyase; Provisional

Probab=86.27  E-value=12  Score=30.23  Aligned_cols=100  Identities=13%  Similarity=0.119  Sum_probs=55.2

Q ss_pred             cHHHHHhhCCCcEEEEEeCC-hhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccH
Q 031568            4 PTKLFMTGNKILQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYC   80 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~   80 (157)
                      ++++++...|+.+|+..+.. +.....+...+...|.  .+.++..+..+.+.+..     ..+-.+|++.....  ...
T Consensus        90 ~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~l~~~l-----~~~TklV~lespsNPtg~v  162 (394)
T PRK09028         90 SNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEGIRELI-----RPNTKVLFLESPGSITMEV  162 (394)
T ss_pred             HHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHHHHHhc-----CcCceEEEEECCCCCCCcH
Confidence            34444445578899888754 3555556666666665  34454333233344332     33567898875321  123


Q ss_pred             HHHHHHHhcccC-CeEEEEecccCCccccCC
Q 031568           81 NYHERLMKLLKV-GGIAVYDNTLWGGTVAVP  110 (157)
Q Consensus        81 ~~~~~~~~~L~~-gG~iv~~~~~~~~~~~~~  110 (157)
                      ..++.+.++.+. |.++++||+...+....|
T Consensus       163 ~dl~~I~~la~~~g~~lvvD~t~a~p~~~~P  193 (394)
T PRK09028        163 QDVPTLSRIAHEHDIVVMLDNTWASPINSRP  193 (394)
T ss_pred             HHHHHHHHHHHHcCCEEEEECCccccccCCc
Confidence            345555555554 566778888755533333

>PRK13699 putative methylase; Provisional

Probab=85.67  E-value=1.6  Score=32.43  Aligned_cols=37  Identities=5%  Similarity=-0.067  Sum_probs=31.5

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA   37 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~   37 (157)
                      +|-.|...|+..-+.+.+++|++++..+.|.+.++..
T Consensus       172 ~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        172 AGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence            5777888887666889999999999999999988764

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=85.23  E-value=1.2  Score=33.61  Aligned_cols=77  Identities=12%  Similarity=0.146  Sum_probs=55.1

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccHHHHHHHHhc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKL   89 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~~~~~~~~~~   89 (157)
                      .-.+++.+|.+..|++.++..- ..++  .+....+|- ++++ +.     ++++|+|+..-   +....+..+.+|...
T Consensus        94 ~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DE-E~Ld-f~-----ens~DLiisSlslHW~NdLPg~m~~ck~~  163 (325)
T KOG2940|consen   94 GVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDE-EFLD-FK-----ENSVDLIISSLSLHWTNDLPGSMIQCKLA  163 (325)
T ss_pred             chhheeeeecchHHHHHhhccC-CCce--EEEEEecch-hccc-cc-----ccchhhhhhhhhhhhhccCchHHHHHHHh
Confidence            3678999999999999887632 1222  244555664 3454 32     67999998754   234577889999999


Q ss_pred             ccCCeEEEEe
Q 031568           90 LKVGGIAVYD   99 (157)
Q Consensus        90 L~~gG~iv~~   99 (157)
                      |||+|.++..
T Consensus       164 lKPDg~Fias  173 (325)
T KOG2940|consen  164 LKPDGLFIAS  173 (325)
T ss_pred             cCCCccchhH
Confidence            9999999874

>PRK08114 cystathionine beta-lyase; Provisional

Probab=84.74  E-value=11  Score=30.57  Aligned_cols=99  Identities=11%  Similarity=0.159  Sum_probs=55.1

Q ss_pred             cHHHHHhhCCCcEEEEEe-CChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc--
Q 031568            4 PTKLFMTGNKILQITAID-VNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNY--   79 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve-~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~--   79 (157)
                      ++++++...++.+|++.+ ........+++.+++.|+  ++.++. .|..+ +....     .+.-.+|++.......  
T Consensus        91 ~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~~~-l~~~l-----~~~TrlV~~EtpsNp~~~  162 (395)
T PRK08114         91 ANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIGAD-IAKLI-----QPNTKVVFLESPGSITME  162 (395)
T ss_pred             HHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHHH-HHHhc-----CCCceEEEEECCCCCCCE
Confidence            344444445788888765 445667777777888876  366554 34333 33332     3346899988643211  


Q ss_pred             HHHHHHHHhccc---CCeEEEEecccCCccccCC
Q 031568           80 CNYHERLMKLLK---VGGIAVYDNTLWGGTVAVP  110 (157)
Q Consensus        80 ~~~~~~~~~~L~---~gG~iv~~~~~~~~~~~~~  110 (157)
                      ..-++.+.++.+   +|-.+++||....+....|
T Consensus       163 v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~p  196 (395)
T PRK08114        163 VHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKA  196 (395)
T ss_pred             eecHHHHHHHHHHhCCCCEEEEECCCccccccCH
Confidence            111333333333   4578888998765544333

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=84.72  E-value=6.1  Score=33.09  Aligned_cols=88  Identities=16%  Similarity=0.095  Sum_probs=48.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEE---------------EccHHHHHHH-HhhcCCCCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFI---------------ESEALSVLDQ-LLKYSENEG   65 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~---------------~~d~~~~l~~-~~~~~~~~~   65 (157)
                      |++++..+... ++.|+.+|.+++..+.+++    .|.. .+++-               -.+..+...+ +.+   .-.
T Consensus       176 Gl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e---~~~  246 (511)
T TIGR00561       176 GLAAIGAANSL-GAIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA---QAK  246 (511)
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHHHHHHHHHHH---HhC
Confidence            45555555554 6789999999998777765    2332 11111               1111111111 110   024


Q ss_pred             ceeEEEEcC---CCcccHHHHHHHHhcccCCeEEEE
Q 031568           66 SFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        66 ~fD~I~iD~---~~~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      .+|+||.-.   ..+...-+.++..+.+|||++|+-
T Consensus       247 ~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       247 EVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             CCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence            699997654   222222256677899999999873

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=84.47  E-value=9.3  Score=30.30  Aligned_cols=87  Identities=14%  Similarity=0.119  Sum_probs=49.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc---cHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|.+.-+.....   +..+.+..+.    ....+|+|+ |+.- .
T Consensus       216 G~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~----~g~gvDvvl-d~~g-~  285 (384)
T cd08265         216 GLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT----KGWGADIQV-EAAG-A  285 (384)
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc----CCCCCCEEE-ECCC-C
Confidence            4445556655543389999988876555544    455321221111   3333333332    234699887 5422 2


Q ss_pred             cHHHHHHHHhcccCCeEEEE
Q 031568           79 YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~   98 (157)
                      ....++.+.+.|+++|.++.
T Consensus       286 ~~~~~~~~~~~l~~~G~~v~  305 (384)
T cd08265         286 PPATIPQMEKSIAINGKIVY  305 (384)
T ss_pred             cHHHHHHHHHHHHcCCEEEE
Confidence            24467788889999999985

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=84.23  E-value=11  Score=30.31  Aligned_cols=93  Identities=23%  Similarity=0.266  Sum_probs=54.0

Q ss_pred             HHHHhhCCCcEEEEEe-CChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHH
Q 031568            6 KLFMTGNKILQITAID-VNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNY   82 (157)
Q Consensus         6 ~~l~~~~~~~~v~~ve-~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~   82 (157)
                      ++++...++.+|++.+ .........++.+.+.|+  .+.++..+-.+.+....     .+.-++||+......  -...
T Consensus        86 ~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~~~l~~~l-----~~~t~~v~~EspsNP~l~v~D  158 (386)
T PF01053_consen   86 ALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDLEALEAAL-----RPNTKLVFLESPSNPTLEVPD  158 (386)
T ss_dssp             HHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSHHHHHHHH-----CTTEEEEEEESSBTTTTB---
T ss_pred             HHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhHHHHHhhc-----cccceEEEEEcCCCccccccc
Confidence            3444455788887776 467777888888888776  36666543233444332     457999999864221  1222


Q ss_pred             HHHHHhcccCC--eEEEEecccCCc
Q 031568           83 HERLMKLLKVG--GIAVYDNTLWGG  105 (157)
Q Consensus        83 ~~~~~~~L~~g--G~iv~~~~~~~~  105 (157)
                      ++.+.++.+..  -.+++||.+...
T Consensus       159 l~~i~~~a~~~g~~~~vVDnT~atp  183 (386)
T PF01053_consen  159 LEAIAKLAKEHGDILVVVDNTFATP  183 (386)
T ss_dssp             HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred             HHHHHHHHHHhCCceEEeeccccce
Confidence            44455555554  467778876433

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=83.97  E-value=6.7  Score=30.46  Aligned_cols=73  Identities=12%  Similarity=0.089  Sum_probs=43.8

Q ss_pred             HHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHH
Q 031568            6 KLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER   85 (157)
Q Consensus         6 ~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~   85 (157)
                      ..+|+. -+.+|++++.+++..+.+++    .|.+.   ++.  ..+.         ..+.+|.++....   ....+..
T Consensus       182 ~~~a~~-~G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~---------~~~~~d~~i~~~~---~~~~~~~  239 (329)
T TIGR02822       182 AQVALA-QGATVHVMTRGAAARRLALA----LGAAS---AGG--AYDT---------PPEPLDAAILFAP---AGGLVPP  239 (329)
T ss_pred             HHHHHH-CCCeEEEEeCChHHHHHHHH----hCCce---ecc--cccc---------CcccceEEEECCC---cHHHHHH
Confidence            334444 36688888988887766554    55432   111  0010         0235887664322   1346888


Q ss_pred             HHhcccCCeEEEEec
Q 031568           86 LMKLLKVGGIAVYDN  100 (157)
Q Consensus        86 ~~~~L~~gG~iv~~~  100 (157)
                      +.+.|++||.++.-.
T Consensus       240 ~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       240 ALEALDRGGVLAVAG  254 (329)
T ss_pred             HHHhhCCCcEEEEEe
Confidence            889999999998743

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=83.81  E-value=12  Score=29.02  Aligned_cols=80  Identities=13%  Similarity=0.093  Sum_probs=44.9

Q ss_pred             HHhhCCCcE-EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568            8 FMTGNKILQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL   86 (157)
Q Consensus         8 l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~   86 (157)
                      ++... +.+ |+.++.+++..+.+++    .|...-+.....+..+.+..+.    ..+.+|+|+-....   ...+..+
T Consensus       180 la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~~~~d~vld~~g~---~~~~~~~  247 (340)
T TIGR00692       180 VAKAS-GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT----DGEGVDVFLEMSGA---PKALEQG  247 (340)
T ss_pred             HHHHc-CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc----CCCCCCEEEECCCC---HHHHHHH
Confidence            44443 554 7777777766655543    3432112222334444444332    23569999854221   3456777


Q ss_pred             HhcccCCeEEEEe
Q 031568           87 MKLLKVGGIAVYD   99 (157)
Q Consensus        87 ~~~L~~gG~iv~~   99 (157)
                      .+.|+++|.++.-
T Consensus       248 ~~~l~~~g~~v~~  260 (340)
T TIGR00692       248 LQAVTPGGRVSLL  260 (340)
T ss_pred             HHhhcCCCEEEEE
Confidence            8899999988763

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=83.65  E-value=9.4  Score=29.95  Aligned_cols=84  Identities=18%  Similarity=0.233  Sum_probs=44.5

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH   83 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~   83 (157)
                      .+..+++......+++++.+++..+.+++    .|...-+.....+..+.+....    ....+|+|+ |+...  ....
T Consensus       202 ~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~~~d~vl-d~vg~--~~~~  270 (367)
T cd08263         202 SAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT----GGRGVDVVV-EALGK--PETF  270 (367)
T ss_pred             HHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh----CCCCCCEEE-EeCCC--HHHH
Confidence            34445544432337778777776655533    3432111212223333333321    135699998 43211  2356


Q ss_pred             HHHHhcccCCeEEEE
Q 031568           84 ERLMKLLKVGGIAVY   98 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~   98 (157)
                      ..+.+.|+++|.++.
T Consensus       271 ~~~~~~l~~~G~~v~  285 (367)
T cd08263         271 KLALDVVRDGGRAVV  285 (367)
T ss_pred             HHHHHHHhcCCEEEE
Confidence            778899999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=83.59  E-value=8.7  Score=30.21  Aligned_cols=85  Identities=20%  Similarity=0.240  Sum_probs=48.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..++++.....+++++.+++..+.+++    .|...-+.....+..+.+..+.     ...+|+|+--...   ..
T Consensus       199 G~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~-----~~~~d~vld~~g~---~~  266 (365)
T cd08278         199 GLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT-----GGGVDYALDTTGV---PA  266 (365)
T ss_pred             HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh-----CCCCcEEEECCCC---cH
Confidence            3344445555544479999999888776654    3432111111123333333331     3469988743321   23


Q ss_pred             HHHHHHhcccCCeEEEE
Q 031568           82 YHERLMKLLKVGGIAVY   98 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~   98 (157)
                      .+..+.+.++++|.++.
T Consensus       267 ~~~~~~~~l~~~G~~v~  283 (365)
T cd08278         267 VIEQAVDALAPRGTLAL  283 (365)
T ss_pred             HHHHHHHHhccCCEEEE
Confidence            56778889999999885

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=83.47  E-value=9.6  Score=29.45  Aligned_cols=87  Identities=14%  Similarity=0.153  Sum_probs=48.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..+++.....+|++++.+++..+.+++    .|.+.-+.....+..+.+..+.    ..+.+|+||--..   ...
T Consensus       176 g~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~----~~~~~d~v~d~~g---~~~  244 (341)
T PRK05396        176 GIMAAAVAKHVGARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELG----MTEGFDVGLEMSG---APS  244 (341)
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhc----CCCCCCEEEECCC---CHH
Confidence            3444555555433367777777776655443    3443212222233434443332    2356998874222   244


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .+..+.+.|+++|.++.-
T Consensus       245 ~~~~~~~~l~~~G~~v~~  262 (341)
T PRK05396        245 AFRQMLDNMNHGGRIAML  262 (341)
T ss_pred             HHHHHHHHHhcCCEEEEE
Confidence            567778899999998873

>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]

Probab=83.38  E-value=4.8  Score=32.67  Aligned_cols=67  Identities=12%  Similarity=0.051  Sum_probs=47.0

Q ss_pred             EeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568           20 IDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV   92 (157)
Q Consensus        20 ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~   92 (157)
                      -|++|.......+-+.+.=-.+-+.+++|-..+.-.-+      +.+||.||.-+..+--.-....+.++|-|
T Consensus       140 SEls~n~a~~lakllp~Yld~~~~~VV~Ggv~ETt~LL------~~rfD~IfyTGsp~VgkIim~aAaKhLTP  206 (477)
T KOG2456|consen  140 SELSPNTAKLLAKLLPQYLDQDLIRVVNGGVPETTELL------KQRFDHIFYTGSPRVGKIIMAAAAKHLTP  206 (477)
T ss_pred             hhcChhHHHHHHHHHHHhcCcceEEEecCCCchHHHHH------HhhccEEEecCCchHHHHHHHHHHhcCCc
Confidence            47778888888777777622346999999998875544      46899999877655444455566666655

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=83.12  E-value=1.2  Score=33.87  Aligned_cols=89  Identities=19%  Similarity=0.166  Sum_probs=51.8

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCC---------------------------cE-EEEEccHHHHHHHHhhcCCCCC
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDH---------------------------KI-NFIESEALSVLDQLLKYSENEG   65 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~---------------------------~i-~~~~~d~~~~l~~~~~~~~~~~   65 (157)
                      -.+|++.|..+...+..++-++..+.-+                           .| +++.+|..+.-+ +.....-.+
T Consensus        79 f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~p-l~~~~~~p~  157 (256)
T PF01234_consen   79 FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNP-LDPPVVLPP  157 (256)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSST-TTTS-SS-S
T ss_pred             hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCC-CCccccCcc
Confidence            4469999999999988877765532111                           01 244444433211 100000013


Q ss_pred             ceeEEEEcC-------CCcccHHHHHHHHhcccCCeEEEEecccC
Q 031568           66 SFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        66 ~fD~I~iD~-------~~~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      +||.|+.-.       +...|...++.+.++|||||.++.-.++-
T Consensus       158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~  202 (256)
T PF01234_consen  158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG  202 (256)
T ss_dssp             SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence            599998632       33457777888889999999999866543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Probab=83.09  E-value=17  Score=27.04  Aligned_cols=65  Identities=15%  Similarity=0.168  Sum_probs=45.5

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL   89 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~   89 (157)
                      +|..||-++...+....+++..|..  + ....+..+.+..+.     .. ||+|++|...+.  -.+..+.+...
T Consensus         2 ~ILiveDd~~i~~~l~~~L~~~g~~--v-~~~~~~~~a~~~~~-----~~-~dlviLD~~lP~~dG~~~~~~iR~~   68 (229)
T COG0745           2 RILLVEDDPELAELLKEYLEEEGYE--V-DVAADGEEALEAAR-----EQ-PDLVLLDLMLPDLDGLELCRRLRAK   68 (229)
T ss_pred             eEEEEcCCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHh-----cC-CCEEEEECCCCCCCHHHHHHHHHhh
Confidence            6889999999999999999999873  3 34455566655542     45 999999986543  23344554433

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=82.81  E-value=11  Score=30.82  Aligned_cols=74  Identities=9%  Similarity=-0.003  Sum_probs=47.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..++..++.. +++|+.+|.+|...+.|++    .|..    .+  +..+.+          ...|+||.-..   ...
T Consensus       214 G~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----~G~~----~~--~~~e~v----------~~aDVVI~atG---~~~  269 (413)
T cd00401         214 GKGCAQSLRGQ-GARVIVTEVDPICALQAAM----EGYE----VM--TMEEAV----------KEGDIFVTTTG---NKD  269 (413)
T ss_pred             HHHHHHHHHHC-CCEEEEEECChhhHHHHHh----cCCE----Ec--cHHHHH----------cCCCEEEECCC---CHH
Confidence            55555566554 6689999999998877765    3431    11  122221          24798886543   344


Q ss_pred             HHHHH-HhcccCCeEEEEe
Q 031568           82 YHERL-MKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~-~~~L~~gG~iv~~   99 (157)
                      .+... .+.+++||+++.-
T Consensus       270 ~i~~~~l~~mk~Ggilvnv  288 (413)
T cd00401         270 IITGEHFEQMKDGAIVCNI  288 (413)
T ss_pred             HHHHHHHhcCCCCcEEEEe
Confidence            56654 7899999999753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=82.18  E-value=14  Score=28.15  Aligned_cols=82  Identities=17%  Similarity=0.154  Sum_probs=46.2

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH   83 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~   83 (157)
                      .+..++++ .+.++++++.+++..+.+++.   .|...-+.....+..+.+....     .+.+|.++ |+..   ...+
T Consensus       161 ~~~~~a~~-~G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~~~-----~~~~d~vi-~~~g---~~~~  227 (329)
T cd05288         161 VVGQIAKL-LGARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAEALKEAA-----PDGIDVYF-DNVG---GEIL  227 (329)
T ss_pred             HHHHHHHH-cCCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHHHHHHhc-----cCCceEEE-Ecch---HHHH
Confidence            34444444 467888888888776665442   3432112222223333333321     24699887 4321   2357


Q ss_pred             HHHHhcccCCeEEEE
Q 031568           84 ERLMKLLKVGGIAVY   98 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~   98 (157)
                      +.+.+.++++|.++.
T Consensus       228 ~~~~~~l~~~G~~v~  242 (329)
T cd05288         228 DAALTLLNKGGRIAL  242 (329)
T ss_pred             HHHHHhcCCCceEEE
Confidence            777889999999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=82.18  E-value=12  Score=28.84  Aligned_cols=83  Identities=16%  Similarity=0.125  Sum_probs=46.3

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH   83 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~   83 (157)
                      .++.+++.....+|++++.+++..+.++    +.|.. .+--...+..+.+..+.    ....+|+|+--..   -....
T Consensus       182 ~~~~~a~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~i~~~~----~~~~~dvvld~~g---~~~~~  249 (340)
T cd05284         182 IAVQILRALTPATVIAVDRSEEALKLAE----RLGAD-HVLNASDDVVEEVRELT----GGRGADAVIDFVG---SDETL  249 (340)
T ss_pred             HHHHHHHHhCCCcEEEEeCCHHHHHHHH----HhCCc-EEEcCCccHHHHHHHHh----CCCCCCEEEEcCC---CHHHH
Confidence            3444555443378888888877666553    34542 22111112223333332    1346998884332   13457


Q ss_pred             HHHHhcccCCeEEEE
Q 031568           84 ERLMKLLKVGGIAVY   98 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~   98 (157)
                      +.+.+.|+++|.++.
T Consensus       250 ~~~~~~l~~~g~~i~  264 (340)
T cd05284         250 ALAAKLLAKGGRYVI  264 (340)
T ss_pred             HHHHHHhhcCCEEEE
Confidence            778899999999885

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=82.06  E-value=12  Score=29.42  Aligned_cols=81  Identities=21%  Similarity=0.267  Sum_probs=44.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |+.++.+|+.. +.++++++.+++....+   +++.|.. .  ++. .+. +.+...      .+.+|+|| |+.  ...
T Consensus       196 G~~avq~Ak~~-Ga~vi~~~~~~~~~~~~---~~~~Ga~-~--vi~~~~~-~~~~~~------~~~~D~vi-d~~--g~~  258 (360)
T PLN02586        196 GHVAVKIGKAF-GLKVTVISSSSNKEDEA---INRLGAD-S--FLVSTDP-EKMKAA------IGTMDYII-DTV--SAV  258 (360)
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCcchhhhH---HHhCCCc-E--EEcCCCH-HHHHhh------cCCCCEEE-ECC--CCH
Confidence            44444455543 66788888776543222   2234542 1  121 121 222322      23589888 432  123


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++.+.+.|+++|.++.-
T Consensus       259 ~~~~~~~~~l~~~G~iv~v  277 (360)
T PLN02586        259 HALGPLLGLLKVNGKLITL  277 (360)
T ss_pred             HHHHHHHHHhcCCcEEEEe
Confidence            4677788999999999863

>TIGR00518 alaDH alanine dehydrogenase

Probab=81.72  E-value=9.8  Score=30.42  Aligned_cols=84  Identities=15%  Similarity=0.067  Sum_probs=45.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..++..+... +.+|+.+|.+++..+.+.+.+   +.  .+.....+..+ +.+.      -..+|+|+....   .+.
T Consensus       179 G~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~~~-l~~~------l~~aDvVI~a~~~~g~~~  245 (370)
T TIGR00518       179 GTNAAKMANGL-GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNAYE-IEDA------VKRADLLIGAVLIPGAKA  245 (370)
T ss_pred             HHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCHHH-HHHH------HccCCEEEEccccCCCCC
Confidence            34444445444 568999999988766554432   21  22222233322 3322      136899997642   111


Q ss_pred             cHHHHHHHHhcccCCeEEEE
Q 031568           79 YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~   98 (157)
                      ..-+-+...+.++++++++-
T Consensus       246 p~lit~~~l~~mk~g~vIvD  265 (370)
T TIGR00518       246 PKLVSNSLVAQMKPGAVIVD  265 (370)
T ss_pred             CcCcCHHHHhcCCCCCEEEE
Confidence            11122555677899988764

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=81.51  E-value=8.5  Score=29.68  Aligned_cols=66  Identities=17%  Similarity=0.130  Sum_probs=38.2

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccCCe
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG   94 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG   94 (157)
                      .+|+.+|.+++..+.+++    .|...  . ...+..+.          -...|+|++-.+......+++.+...+++++
T Consensus        32 ~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~~----------~~~aDvViiavp~~~~~~v~~~l~~~l~~~~   94 (307)
T PRK07502         32 GEIVGADRSAETRARARE----LGLGD--R-VTTSAAEA----------VKGADLVILCVPVGASGAVAAEIAPHLKPGA   94 (307)
T ss_pred             cEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHHH----------hcCCCEEEECCCHHHHHHHHHHHHhhCCCCC
Confidence            489999999987766643    34321  1 12222222          1347888877654444555666666677776


Q ss_pred             EEE
Q 031568           95 IAV   97 (157)
Q Consensus        95 ~iv   97 (157)
                      +++
T Consensus        95 iv~   97 (307)
T PRK07502         95 IVT   97 (307)
T ss_pred             EEE
Confidence            553

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=81.40  E-value=6.6  Score=30.73  Aligned_cols=75  Identities=11%  Similarity=0.227  Sum_probs=57.0

Q ss_pred             EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEE-EcCC----CcccHHHHHHHHhccc
Q 031568           17 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF-VDAD----KDNYCNYHERLMKLLK   91 (157)
Q Consensus        17 v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~-iD~~----~~~~~~~~~~~~~~L~   91 (157)
                      -.-++.++..++.+++|++      ||.++++|..|.+..-     +.+..|.++ +|+.    .......+.++.+-+.
T Consensus       289 ~lP~yl~~~~YEsir~n~~------RV~ihha~~iE~l~~k-----~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~  357 (414)
T COG5379         289 ALPAYLDEGVYESIRQNLR------RVAIHHADIIELLAGK-----PAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAE  357 (414)
T ss_pred             CCChhhchhhHHHHHhhhh------heeeecccHHHHhccC-----CCCCcceEEEecchhhcccchHHHHHHHHhhccC
Confidence            3567788999999999885      5899999999998632     246788775 4552    1235667888889999


Q ss_pred             CCeEEEEeccc
Q 031568           92 VGGIAVYDNTL  102 (157)
Q Consensus        92 ~gG~iv~~~~~  102 (157)
                      +|..+|+....
T Consensus       358 ~gA~VifRtaa  368 (414)
T COG5379         358 AGARVIFRTAA  368 (414)
T ss_pred             CCcEEEEeccc
Confidence            99999987553

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=81.30  E-value=14  Score=28.85  Aligned_cols=85  Identities=18%  Similarity=0.134  Sum_probs=48.3

Q ss_pred             cccHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHH---HHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568            2 HLPTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL---SVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         2 g~st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~---~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      |..+..+|+.. +. +|++++.+++..+.++    +.|...-+.....+..   +.+..+.    ....+|+||--..  
T Consensus       190 G~~~~~lak~~-G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g--  258 (361)
T cd08231         190 GLYAVAAAKLA-GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT----GGRGADVVIEASG--  258 (361)
T ss_pred             HHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh----CCCCCcEEEECCC--
Confidence            34445555554 45 8999998888776654    3454321222111111   1222221    1346998874332  


Q ss_pred             ccHHHHHHHHhcccCCeEEEE
Q 031568           78 NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~   98 (157)
                       ....+..+.+.++++|.++.
T Consensus       259 -~~~~~~~~~~~l~~~G~~v~  278 (361)
T cd08231         259 -HPAAVPEGLELLRRGGTYVL  278 (361)
T ss_pred             -ChHHHHHHHHHhccCCEEEE
Confidence             13456778899999999985

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=81.18  E-value=17  Score=27.58  Aligned_cols=83  Identities=11%  Similarity=0.055  Sum_probs=46.2

Q ss_pred             ccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc-HHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            3 LPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         3 ~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      ..+..++++ .+.+++.+..+++..+.+++    .|...-+.....+ ..+.+..+.    ....+|+++- +..   ..
T Consensus       155 ~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~i~-~~~---~~  221 (334)
T PTZ00354        155 TAAAQLAEK-YGAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLT----GEKGVNLVLD-CVG---GS  221 (334)
T ss_pred             HHHHHHHHH-cCCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHh----CCCCceEEEE-CCc---hH
Confidence            334444444 36666677777777666643    4542112111222 333333332    2346999984 321   34


Q ss_pred             HHHHHHhcccCCeEEEE
Q 031568           82 YHERLMKLLKVGGIAVY   98 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~   98 (157)
                      .+..+.+.|+++|.++.
T Consensus       222 ~~~~~~~~l~~~g~~i~  238 (334)
T PTZ00354        222 YLSETAEVLAVDGKWIV  238 (334)
T ss_pred             HHHHHHHHhccCCeEEE
Confidence            66778889999999885

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=81.17  E-value=13  Score=28.81  Aligned_cols=83  Identities=14%  Similarity=0.157  Sum_probs=45.3

Q ss_pred             cHHHHHhhCCCcE-EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH---HHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            4 PTKLFMTGNKILQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA---LSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         4 st~~l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .++.+|+.. +.+ |+.++.+++..+.+++    .|.+.-+.....+.   .+.+....    ....+|+|+-....   
T Consensus       177 ~a~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~----~~~~~d~vld~~g~---  244 (343)
T cd05285         177 LTAAVAKAF-GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL----GGKGPDVVIECTGA---  244 (343)
T ss_pred             HHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh----CCCCCCEEEECCCC---
Confidence            344455553 444 8888888777766644    24332122222221   22222221    13459988854331   


Q ss_pred             HHHHHHHHhcccCCeEEEE
Q 031568           80 CNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~   98 (157)
                      ...+....+.|+++|.++.
T Consensus       245 ~~~~~~~~~~l~~~G~~v~  263 (343)
T cd05285         245 ESCIQTAIYATRPGGTVVL  263 (343)
T ss_pred             HHHHHHHHHHhhcCCEEEE
Confidence            2356777889999999885

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=81.13  E-value=14  Score=28.13  Aligned_cols=84  Identities=18%  Similarity=0.147  Sum_probs=48.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..+..++.+ -+.+++.++.+++..+.+++    .|...-+.... .+..+.+..+.    ....+|+++-...    .
T Consensus       173 g~~~~~~a~~-~G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~i~~~~----~  239 (336)
T cd08276         173 SLFALQFAKA-AGARVIATSSSDEKLERAKA----LGADHVINYRTTPDWGEEVLKLT----GGRGVDHVVEVGG----P  239 (336)
T ss_pred             HHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCHHHHHHHHc----CCCCCcEEEECCC----h
Confidence            3344444444 46788998888887776654    24332122222 33444444432    2346999984322    2


Q ss_pred             HHHHHHHhcccCCeEEEE
Q 031568           81 NYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~   98 (157)
                      .....+.+.|+++|.++.
T Consensus       240 ~~~~~~~~~l~~~G~~v~  257 (336)
T cd08276         240 GTLAQSIKAVAPGGVISL  257 (336)
T ss_pred             HHHHHHHHhhcCCCEEEE
Confidence            356677889999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=81.04  E-value=7.7  Score=24.05  Aligned_cols=67  Identities=7%  Similarity=0.037  Sum_probs=45.9

Q ss_pred             CcEEE-EEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568           14 ILQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV   92 (157)
Q Consensus        14 ~~~v~-~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~   92 (157)
                      ..+|+ ..+.+++..+...+   +.+    +.+...+..+.++          .-|+||+-..+....+.++.+ ..+.+
T Consensus        25 ~~~v~~~~~r~~~~~~~~~~---~~~----~~~~~~~~~~~~~----------~advvilav~p~~~~~v~~~i-~~~~~   86 (96)
T PF03807_consen   25 PHEVIIVSSRSPEKAAELAK---EYG----VQATADDNEEAAQ----------EADVVILAVKPQQLPEVLSEI-PHLLK   86 (96)
T ss_dssp             GGEEEEEEESSHHHHHHHHH---HCT----TEEESEEHHHHHH----------HTSEEEE-S-GGGHHHHHHHH-HHHHT
T ss_pred             ceeEEeeccCcHHHHHHHHH---hhc----cccccCChHHhhc----------cCCEEEEEECHHHHHHHHHHH-hhccC
Confidence            37888 44999988776654   333    4455556766654          479999988777888888888 66777


Q ss_pred             CeEEEE
Q 031568           93 GGIAVY   98 (157)
Q Consensus        93 gG~iv~   98 (157)
                      +.+++.
T Consensus        87 ~~~vis   92 (96)
T PF03807_consen   87 GKLVIS   92 (96)
T ss_dssp             TSEEEE
T ss_pred             CCEEEE
Confidence            777764

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>cd05281 TDH Threonine dehydrogenase

Probab=80.89  E-value=15  Score=28.36  Aligned_cols=82  Identities=18%  Similarity=0.113  Sum_probs=44.4

Q ss_pred             cHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568            4 PTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY   82 (157)
Q Consensus         4 st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~   82 (157)
                      .++.+++.. +. ++++++.+++....+++    .|...-+.....+.. .+.++.    ..+.+|+||-...   ....
T Consensus       178 ~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~----~~~~vd~vld~~g---~~~~  244 (341)
T cd05281         178 MAIAVAKAA-GASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT----DGTGVDVVLEMSG---NPKA  244 (341)
T ss_pred             HHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc----CCCCCCEEEECCC---CHHH
Confidence            344455544 44 67777766666655543    343211222222333 233332    2356999985432   2345


Q ss_pred             HHHHHhcccCCeEEEE
Q 031568           83 HERLMKLLKVGGIAVY   98 (157)
Q Consensus        83 ~~~~~~~L~~gG~iv~   98 (157)
                      ...+.+.|+++|.++.
T Consensus       245 ~~~~~~~l~~~G~~v~  260 (341)
T cd05281         245 IEQGLKALTPGGRVSI  260 (341)
T ss_pred             HHHHHHHhccCCEEEE
Confidence            6777889999999875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK05967 cystathionine beta-lyase; Provisional

Probab=80.64  E-value=27  Score=28.29  Aligned_cols=93  Identities=14%  Similarity=0.106  Sum_probs=53.6

Q ss_pred             cHHHHHhhCCCcEEEEEeCC-hhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccH
Q 031568            4 PTKLFMTGNKILQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYC   80 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~   80 (157)
                      ++++++...|+.+|+..+.. ......+++.++..|.  +++++..+..+.+.+..     .+.-.+|++..+..  ...
T Consensus        93 ~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e~l~~al-----~~~TklV~lesPsNP~l~v  165 (395)
T PRK05967         93 TVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGAGIAKLM-----RPNTKVVHTEAPGSNTFEM  165 (395)
T ss_pred             HHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHHHHHHhc-----CcCceEEEEECCCCCCCcH
Confidence            33444445588888887754 3344455566777776  46666544334444432     34578999885321  223


Q ss_pred             HHHHHHHhcccC-CeEEEEecccC
Q 031568           81 NYHERLMKLLKV-GGIAVYDNTLW  103 (157)
Q Consensus        81 ~~~~~~~~~L~~-gG~iv~~~~~~  103 (157)
                      ..++.+.++.+. |.++++|++..
T Consensus       166 ~dl~~I~~la~~~g~~vvVD~t~a  189 (395)
T PRK05967        166 QDIPAIAEAAHRHGAIVMMDNTWA  189 (395)
T ss_pred             HHHHHHHHHHHHhCCEEEEECCcc
Confidence            345566665554 56677788753

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=80.63  E-value=16  Score=28.09  Aligned_cols=82  Identities=24%  Similarity=0.350  Sum_probs=47.3

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE   84 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~   84 (157)
                      ++.++.+ -+.+++.+..+++..+.++    ..|.+.-+.....+..+.+....    ..+.+|+++-+...   ...+.
T Consensus       182 ~~~~a~~-~g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~----~~~~vd~vl~~~~~---~~~~~  249 (341)
T cd08297         182 GVQYAKA-MGLRVIAIDVGDEKLELAK----ELGADAFVDFKKSDDVEAVKELT----GGGGAHAVVVTAVS---AAAYE  249 (341)
T ss_pred             HHHHHHH-CCCeEEEEeCCHHHHHHHH----HcCCcEEEcCCCccHHHHHHHHh----cCCCCCEEEEcCCc---hHHHH
Confidence            3334444 3678999988887766553    34432112222223333343332    13569999864432   34567


Q ss_pred             HHHhcccCCeEEEE
Q 031568           85 RLMKLLKVGGIAVY   98 (157)
Q Consensus        85 ~~~~~L~~gG~iv~   98 (157)
                      .+.+.++++|.++.
T Consensus       250 ~~~~~l~~~g~~v~  263 (341)
T cd08297         250 QALDYLRPGGTLVC  263 (341)
T ss_pred             HHHHHhhcCCEEEE
Confidence            77888999999985

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=80.62  E-value=14  Score=28.63  Aligned_cols=79  Identities=19%  Similarity=0.212  Sum_probs=43.7

Q ss_pred             HHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHH
Q 031568            7 LFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER   85 (157)
Q Consensus         7 ~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~   85 (157)
                      .+|+.. +. +|++++.+++..+.+++    .|...-+.....+..+.+....     .+.+|+++ |...  -...++.
T Consensus       193 ~~a~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~-----~~~~d~vi-d~~g--~~~~~~~  259 (350)
T cd08240         193 ALLKAL-GPANIIVVDIDEAKLEAAKA----AGADVVVNGSDPDAAKRIIKAA-----GGGVDAVI-DFVN--NSATASL  259 (350)
T ss_pred             HHHHHc-CCCeEEEEeCCHHHHHHHHH----hCCcEEecCCCccHHHHHHHHh-----CCCCcEEE-ECCC--CHHHHHH
Confidence            344443 44 78888888777666533    3442111111122223333332     22699988 4321  1345778


Q ss_pred             HHhcccCCeEEEE
Q 031568           86 LMKLLKVGGIAVY   98 (157)
Q Consensus        86 ~~~~L~~gG~iv~   98 (157)
                      +.+.|+++|.++.
T Consensus       260 ~~~~l~~~g~~v~  272 (350)
T cd08240         260 AFDILAKGGKLVL  272 (350)
T ss_pred             HHHHhhcCCeEEE
Confidence            8899999999885

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=80.57  E-value=2.2  Score=34.06  Aligned_cols=93  Identities=18%  Similarity=0.133  Sum_probs=54.7

Q ss_pred             cccHHHHHh--hCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc-----
Q 031568            2 HLPTKLFMT--GNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-----   73 (157)
Q Consensus         2 g~st~~l~~--~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD-----   73 (157)
                      |=.|.++|.  .+|.. .++.+|-+|..-++.-.-.+.... .+.....+|..+-.-.+.    ....|+++++-     
T Consensus       123 GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp----~ad~ytl~i~~~eLl~  197 (484)
T COG5459         123 GPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLP----AADLYTLAIVLDELLP  197 (484)
T ss_pred             CCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCC----ccceeehhhhhhhhcc
Confidence            345666776  45654 578888888766555443333222 233344444443322221    24578988753     


Q ss_pred             -CCCcccHHHHHHHHhcccCCeEEEEe
Q 031568           74 -ADKDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        74 -~~~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                       ........+++..+.+++|||.+|+-
T Consensus       198 d~~ek~i~~~ie~lw~l~~~gg~lViv  224 (484)
T COG5459         198 DGNEKPIQVNIERLWNLLAPGGHLVIV  224 (484)
T ss_pred             ccCcchHHHHHHHHHHhccCCCeEEEE
Confidence             22223455788889999999999874

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=80.57  E-value=12  Score=28.74  Aligned_cols=78  Identities=19%  Similarity=0.217  Sum_probs=44.1

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM   87 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~   87 (157)
                      +|+...+.+|+++..+++..+.+++    .|.+.-+.. ..+..+.+...     ..+.+|+|+ |..  ........+.
T Consensus       168 ~ak~~~G~~vi~~~~~~~~~~~l~~----~g~~~~~~~-~~~~~~~i~~~-----~~~~vd~vl-~~~--~~~~~~~~~~  234 (336)
T TIGR02817       168 LARQLTGLTVIATASRPESQEWVLE----LGAHHVIDH-SKPLKAQLEKL-----GLEAVSYVF-SLT--HTDQHFKEIV  234 (336)
T ss_pred             HHHHhCCCEEEEEcCcHHHHHHHHH----cCCCEEEEC-CCCHHHHHHHh-----cCCCCCEEE-EcC--CcHHHHHHHH
Confidence            3433236788888877776655533    454311211 12333434333     134699888 432  1134567778


Q ss_pred             hcccCCeEEEE
Q 031568           88 KLLKVGGIAVY   98 (157)
Q Consensus        88 ~~L~~gG~iv~   98 (157)
                      +.|+++|.++.
T Consensus       235 ~~l~~~G~~v~  245 (336)
T TIGR02817       235 ELLAPQGRFAL  245 (336)
T ss_pred             HHhccCCEEEE
Confidence            89999999875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=80.50  E-value=23  Score=26.87  Aligned_cols=100  Identities=8%  Similarity=-0.003  Sum_probs=57.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCC-hhHHHHHHHHHHHcCC--CCcEEEEEccHHH-HHHHHhhcCCCCCceeEEEEcCC--
Q 031568            2 HLPTKLFMTGNKILQITAIDVN-RETYEIGLPIIKKAGV--DHKINFIESEALS-VLDQLLKYSENEGSFDYAFVDAD--   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~-~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~-~l~~~~~~~~~~~~fD~I~iD~~--   75 (157)
                      |+-|..+-..++. .+..+|+| |+.++.=++.+.+.+.  .++.+++..|..+ +...+.+..-..+..-+++..+-  
T Consensus        91 GlDTr~~Rl~~~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~  169 (260)
T TIGR00027        91 GLDTRAYRLPWPD-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLM  169 (260)
T ss_pred             ccccHHHhcCCCC-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhh
Confidence            6666655444443 35556665 6677777777776553  3578889899863 33333210000112334444432  


Q ss_pred             ---CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           76 ---KDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        76 ---~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                         ......+++.+.++..||+.|++|-+.
T Consensus       170 YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       170 YLTEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence               223456777777777799999998653

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=80.28  E-value=8.6  Score=29.26  Aligned_cols=66  Identities=14%  Similarity=0.118  Sum_probs=39.1

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV   92 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~   92 (157)
                      .+.+|+++|.+++..+.+++    .|.   +.....+. +.          -...|+||+-.+.....+.++.+.+.+++
T Consensus        22 ~g~~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~-~~----------~~~aDlVilavp~~~~~~~~~~l~~~l~~   83 (279)
T PRK07417         22 LGHTVYGVSRRESTCERAIE----RGL---VDEASTDL-SL----------LKDCDLVILALPIGLLLPPSEQLIPALPP   83 (279)
T ss_pred             CCCEEEEEECCHHHHHHHHH----CCC---cccccCCH-hH----------hcCCCEEEEcCCHHHHHHHHHHHHHhCCC
Confidence            36789999999988776654    232   11111121 11          13478888876655555666666667766


Q ss_pred             CeEE
Q 031568           93 GGIA   96 (157)
Q Consensus        93 gG~i   96 (157)
                      +.++
T Consensus        84 ~~ii   87 (279)
T PRK07417         84 EAIV   87 (279)
T ss_pred             CcEE
Confidence            6444

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=80.26  E-value=2.1  Score=32.64  Aligned_cols=50  Identities=10%  Similarity=0.054  Sum_probs=35.6

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      -..+.++|+++.+++..+.|+...       ++.+|+.+....-.     ...+|+++.+++
T Consensus        22 ~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~-----~~~~D~l~~gpP   71 (275)
T cd00315          22 FEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF-----IPDIDLLTGGFP   71 (275)
T ss_pred             CEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc-----CCCCCEEEeCCC
Confidence            345789999999999999887422       56777776644210     246999998764

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	157
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		1e-53
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		2e-44
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		1e-18
3cbg_A	232	Functional And Structural Characterization Of A Cat		1e-17
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		2e-15
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		6e-11
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		1e-09
2gpy_A	233	Crystal Structure Of Putative O-methyltransferase F		2e-06
3dul_A	223	Crystal Structure Analysis Of The O-Methyltransfera		6e-05
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		9e-05

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  204 bits (520), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 117/142 (82%), Gaps = 1/142 (0%)
Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +ITAID +RE YEIGLP I+KAGV+HKINFIES+A+  LD LL+  E+EGS+D+ FVDAD
Sbjct: 97  KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156
Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY  YHERLMKL+KVGGI  YDNTLWGGTVA PE +VPD F   +R+A+++LN+ LA 
Sbjct: 157 KPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAA 215
Query: 136 DPRVQLSHVALGDGITICRRIF 157
           DPR+++ H+ LGDGIT CRR++
Sbjct: 216 DPRIEIVHLPLGDGITFCRRLY 237

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 108/141 (76%)
Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +I A+D+N+E YE+GLP+IKKAGVDHKI+F E  AL VLD+++K  +N GS+D+ FVDAD
Sbjct: 106 KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD 165
Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           KDNY NYH+RL+ L+KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA 
Sbjct: 166 KDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAV 225
Query: 136 DPRVQLSHVALGDGITICRRI 156
           DPR+++  + +GDGITICRRI
Sbjct: 226 DPRIEICMLPVGDGITICRRI 246

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 79/141 (56%), Gaps = 7/141 (4%)
Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           ++   +V+ +  E+G P+ ++A  +HKI+     AL  LD+LL   E  G+FD A VDAD
Sbjct: 96  RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA-GTFDVAVVDAD 154
Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K+N   Y+ER ++LL+ GGI      LW G V  P +         + + + +LN  +  
Sbjct: 155 KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKG------DVAAECVRNLNERIRR 208
Query: 136 DPRVQLSHVALGDGITICRRI 156
           D RV +S + LGDG+T+  +I
Sbjct: 209 DVRVYISLLPLGDGLTLAFKI 229

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 74/140 (52%), Gaps = 11/140 (7%)
Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           QI A D +     I     +KAGV  KI+     AL+ L+QL +  +    FD  F+DAD
Sbjct: 99  QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDAD 157
Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--PEEQVPDHFRGSSRQAILDLNRSL 133
           K NY  Y+E  + LL+ GG+ V DN LW G V    P+E        +  Q +   NR L
Sbjct: 158 KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQE--------AQTQVLQQFNRDL 209
Query: 134 ADDPRVQLSHVALGDGITIC 153
           A D RV++S + LGDG+T+ 
Sbjct: 210 AQDERVRISVIPLGDGMTLA 229

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG---SFDYAFV 72
           Q+   D+N    +   P  ++A  +HKI      AL  L  LL    NEG    FD+ F+
Sbjct: 87  QVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLL----NEGGEHQFDFIFI 142
Query: 73  DADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS 132
           DADK NY NY+E  +KL+   G+   DN  W G V  P +       G +R+ I  LN+ 
Sbjct: 143 DADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDT-----SGQTRE-IKKLNQV 196
Query: 133 LADDPRVQLSHVALGDGITICRRI 156
           + +D RV +S +A+ DG+ + + I
Sbjct: 197 IKNDSRVFVSLLAIADGMFLVQPI 220

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Query: 21  DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80
           DV+ ++  +     +KAG+  KI    S A   L +L+ ++     +D  ++DADK N  
Sbjct: 96  DVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELI-HAGQAWQYDLIYIDADKANTD 154
Query: 81  NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ 140
            Y+E  +KLL+ GG+   DN L  G VA  E Q  ++      Q I   N+ +  D RV 
Sbjct: 155 LYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENN------QLIRLFNQKVYKDERVD 208
Query: 141 LSHVALGDGITICRR 155
              + +GDG+T+ R+
Sbjct: 209 XILIPIGDGLTLARK 223

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 16/150 (10%)
Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK----------YSENEG 65
           +I   DV+ E   +     K+ G+++KI      AL  L  L+           ++    
Sbjct: 87  KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPS 146
Query: 66  SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQA 125
           S D  F+DADK+NY NY+  ++KLLK GG+ + DN LW G+VA    Q P      S   
Sbjct: 147 SIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEP------STVG 200
Query: 126 ILDLNRSLADDPRVQLSHVALGDGITICRR 155
           I   N  + +D  V +S V + DG+++ R+
Sbjct: 201 IRKFNELVYNDSLVDVSLVPIADGVSLVRK 230

>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From Bacillus Halodurans Length = 233

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 17  ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 76
           I +I+ +   YE     +K  G++ +I  +  +AL + ++L  Y      FD  F+DA K
Sbjct: 81  IVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYP----LFDVLFIDAAK 136
Query: 77  DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD-LNRSLAD 135
             Y  + +     ++ GG+ + DN L+ G VA   E   +H R       +D  N+ L +
Sbjct: 137 GQYRRFFDXYSPXVRPGGLILSDNVLFRGLVA---ETDIEHKRHKQLATKIDTYNQWLLE 193
Query: 136 DPRVQLSHVALGDGITIC 153
            P+       +GDGI I 
Sbjct: 194 HPQYDTRIFPVGDGIAIS 211

>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From Bacillus Cereus Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVD 73
           ++  ++ + +  +I    I++A ++ ++      AL  L Q+    ENE    FD+ F+D
Sbjct: 85  RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQI----ENEKYEPFDFIFID 140
Query: 74  ADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR-QAILDLNRS 132
           ADK N   Y E  +KL + G + + DN        V E +V D+     R Q I      
Sbjct: 141 ADKQNNPAYFEWALKLSRPGTVIIGDNV-------VREGEVIDNTSNDPRVQGIRRFYEL 193
Query: 133 LADDPRV 139
           +A +PRV
Sbjct: 194 IAAEPRV 200

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           Q+  ++ +    ++    ++ AGVD ++   E  AL  L+ L +      +FD  F+DAD
Sbjct: 90  QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDAD 145
Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPE 111
           K N  +Y    ++  + G + + DN +  G V  P+
Sbjct: 146 KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQ 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	2e-60
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	5e-59
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	4e-55
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	5e-54
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	8e-54
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	3e-53
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	1e-52
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	2e-52
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	4e-52
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	1e-51
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	5e-51
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	4e-49
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	1e-48
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	8e-39
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	7e-04

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  185 bits (472), Expect = 2e-60
 Identities = 92/142 (64%), Positives = 117/142 (82%), Gaps = 1/142 (0%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +ITAID +RE YEIGLP I+KAGV+HKINFIES+A+  LD LL+  E+EGS+D+ FVDAD
Sbjct: 97  KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY  YHERLMKL+KVGGI  YDNTLWGGTVA PE +VPD  +  +R+A+++LN+ LA 
Sbjct: 157 KPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMK-ENREAVIELNKLLAA 215

Query: 136 DPRVQLSHVALGDGITICRRIF 157
           DPR+++ H+ LGDGIT CRR++
Sbjct: 216 DPRIEIVHLPLGDGITFCRRLY 237

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  182 bits (464), Expect = 5e-59
 Identities = 79/141 (56%), Positives = 108/141 (76%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +I A+D+N+E YE+GLP+IKKAGVDHKI+F E  AL VLD+++K  +N GS+D+ FVDAD
Sbjct: 106 KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD 165

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           KDNY NYH+RL+ L+KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA 
Sbjct: 166 KDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAV 225

Query: 136 DPRVQLSHVALGDGITICRRI 156
           DPR+++  + +GDGITICRRI
Sbjct: 226 DPRIEICMLPVGDGITICRRI 246

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score =  172 bits (437), Expect = 4e-55
 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
            +T I+ N    +     +     ++++  IE  AL   + +     N+  +D  F+DA 
Sbjct: 97  HVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENV-----NDKVYDMIFIDAA 151

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K     + E    LLK  G+ + DN L+ G V+        + R    + + D N  L  
Sbjct: 152 KAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVR-QMVKKVQDYNEWLIK 210

Query: 136 DPRVQLSHVALGDGITICRR 155
            P    + + + DG+ I  +
Sbjct: 211 QPGYTTNFLNIDDGLAISIK 230

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score =  169 bits (430), Expect = 5e-54
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 6/140 (4%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
            I +I+ +   YE     +K  G++ +I  +  +AL + ++L    E    FD  F+DA 
Sbjct: 80  TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKL----ELYPLFDVLFIDAA 135

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K  Y  + +    +++ GG+ + DN L+ G VA  + +   H +      I   N+ L +
Sbjct: 136 KGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAETDIEHKRHKQ--LATKIDTYNQWLLE 193

Query: 136 DPRVQLSHVALGDGITICRR 155
            P+       +GDGI I  +
Sbjct: 194 HPQYDTRIFPVGDGIAISIK 213

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score =  168 bits (428), Expect = 8e-54
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 7/140 (5%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
            +   DV+ ++  +     +KAG+  KI    S A   L +L+   +    +D  ++DAD
Sbjct: 91  TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQ-AWQYDLIYIDAD 149

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K N   Y+E  +KLL+ GG+   DN L  G VA  E Q  ++      Q I   N+ +  
Sbjct: 150 KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENN------QLIRLFNQKVYK 203

Query: 136 DPRVQLSHVALGDGITICRR 155
           D RV +  + +GDG+T+ R+
Sbjct: 204 DERVDMILIPIGDGLTLARK 223

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score =  167 bits (425), Expect = 3e-53
 Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           Q+   D+N    +   P  ++A  +HKI      AL  L  LL     E  FD+ F+DAD
Sbjct: 87  QVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGG-EHQFDFIFIDAD 145

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY NY+E  +KL+   G+   DN  W G V  P +           + I  LN+ + +
Sbjct: 146 KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQ------TREIKKLNQVIKN 199

Query: 136 DPRVQLSHVALGDGITICRRI 156
           D RV +S +A+ DG+ + + I
Sbjct: 200 DSRVFVSLLAIADGMFLVQPI 220

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score =  165 bits (421), Expect = 1e-52
 Identities = 53/140 (37%), Positives = 73/140 (52%), Gaps = 7/140 (5%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           QI A D +     I     +KAGV  KI+     AL+ L+QL +  +    FD  F+DAD
Sbjct: 99  QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDAD 157

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K NY  Y+E  + LL+ GG+ V DN LW G V   + Q          Q +   NR LA 
Sbjct: 158 KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQT------QVLQQFNRDLAQ 211

Query: 136 DPRVQLSHVALGDGITICRR 155
           D RV++S + LGDG+T+  +
Sbjct: 212 DERVRISVIPLGDGMTLALK 231

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score =  165 bits (419), Expect = 2e-52
 Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 7/141 (4%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           ++   +V+ +  E+G P+ ++A  +HKI+     AL  LD+LL  +   G+FD A VDAD
Sbjct: 96  RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLA-AGEAGTFDVAVVDAD 154

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K+N   Y+ER ++LL+ GGI      LW G V  P +           + + +LN  +  
Sbjct: 155 KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAA------ECVRNLNERIRR 208

Query: 136 DPRVQLSHVALGDGITICRRI 156
           D RV +S + LGDG+T+  +I
Sbjct: 209 DVRVYISLLPLGDGLTLAFKI 229

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score =  164 bits (418), Expect = 4e-52
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 16/150 (10%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK----------YSENEG 65
           +I   DV+ E   +     K+ G+++KI      AL  L  L+           ++    
Sbjct: 87  KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPS 146

Query: 66  SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQA 125
           S D  F+DADK+NY NY+  ++KLLK GG+ + DN LW G+VA    Q P          
Sbjct: 147 SIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPST------VG 200

Query: 126 ILDLNRSLADDPRVQLSHVALGDGITICRR 155
           I   N  + +D  V +S V + DG+++ R+
Sbjct: 201 IRKFNELVYNDSLVDVSLVPIADGVSLVRK 230

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  163 bits (415), Expect = 1e-51
 Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 15/144 (10%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           Q+  ++ +    ++    ++ AGVD ++   E  AL  L+ L        +FD  F+DAD
Sbjct: 90  QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL----GECPAFDLIFIDAD 145

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K N  +Y    ++  + G + + DN +  G V  P+            Q +      +  
Sbjct: 146 KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADER------VQGVRQFIEMMGA 199

Query: 136 DPRV-----QLSHVALGDGITICR 154
           +PR+     Q       DG T+  
Sbjct: 200 EPRLTATALQTVGTKGWDGFTLAW 223

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score =  161 bits (409), Expect = 5e-51
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 13/145 (8%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           ++  ++ + +  +I    I++A ++ ++      AL  L Q+    E    FD+ F+DAD
Sbjct: 85  RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIEN--EKYEPFDFIFIDAD 142

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K N   Y E  +KL + G + + DN +  G V       P        Q I      +A 
Sbjct: 143 KQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPR------VQGIRRFYELIAA 196

Query: 136 DPRV-----QLSHVALGDGITICRR 155
           +PRV     Q       DG  +   
Sbjct: 197 EPRVSATALQTVGSKGYDGFIMAVV 221

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score =  156 bits (396), Expect = 4e-49
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 14/141 (9%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           ++  ID +R+  E    ++   G+  ++     + L +          +   D  F+D D
Sbjct: 83  RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA-------GQRDIDILFMDCD 135

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
             N  +  ER+ + L    + +  N L  G+VA   E            A+ + N  L+ 
Sbjct: 136 VFNGADVLERMNRCLAKNALLIAVNALRRGSVAESHEDP-------ETAALREFNHHLSR 188

Query: 136 DPRVQLSHVALGDGITICRRI 156
                 + V +G+G+ +  R+
Sbjct: 189 RRDFFTTIVPVGNGVLLGYRL 209

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score =  155 bits (394), Expect = 1e-48
 Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 12/142 (8%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 74
            +T ID   E       + ++AG    ++ F+ S  L V+ +L        S+   F   
Sbjct: 83  TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-----ANDSYQLVFGQV 137

Query: 75  DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 134
              +     +    LL+ GG  V  + L  GT+A    +  D       QA  D +  + 
Sbjct: 138 SPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDT------QAARDADEYIR 191

Query: 135 DDPRVQLSHVALGDGITICRRI 156
                 ++ + LG G+T+  + 
Sbjct: 192 SIEGAHVARLPLGAGLTVVTKA 213

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score =  130 bits (328), Expect = 8e-39
 Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           ++  +++N +   I   ++  AG+  K+  +   +  ++ QL K   +  + D  F+D  
Sbjct: 85  RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK-KYDVDTLDMVFLDHW 143

Query: 76  KDNYCNYHERLM--KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL 133
           KD Y      L    LL+ G + + DN +  GT                   +   +   
Sbjct: 144 KDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLA-------------YVRGSSSFE 190

Query: 134 ADDPRVQLSHVALGDGITIC 153
                  L ++ + DG+   
Sbjct: 191 CTHYSSYLEYMKVVDGLEKA 210

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 30/168 (17%), Positives = 49/168 (29%), Gaps = 39/168 (23%)

Query: 12  NKILQ------ITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSEN 63
             IL       +   D  ++  ++   I+ K  +DH I      S  L +   LL   E 
Sbjct: 19  KDILSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 64  EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA---------VYDNTLWGGTVAVPEEQV 114
                    +  + NY    + LM  +K                 + L+       +  V
Sbjct: 78  --MVQKFVEEVLRINY----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 115 PDHFRGSSRQAILDLNR---SLADDPRVQLSHVALGDG-----ITICR 154
               R    Q  L L +    L     V +    LG G     + +C 
Sbjct: 132 S---R---LQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCL 172

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236

 Score = 37.6 bits (86), Expect = 7e-04
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 16/115 (13%)

Query: 1   MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY 60
           M +          I +   I+ N   ++       +    HK+  ++     V   L   
Sbjct: 71  MAIAASKVQE-APIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP-- 125

Query: 61  SENEGSFDYAFVDADKDNYCNYH--------ERLMKLLKVGGIAVYDNTLWGGTV 107
              +G FD    D    +   +H            +LLK GG+  Y N    G +
Sbjct: 126 ---DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGEL 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.96
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.96
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.95
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.95
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.95
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.94
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.94
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.94
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.94
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.93
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.91
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.91
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.89
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.87
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.77
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.62
2o07_A	304	Spermidine synthase; structural genomics, structur	99.62
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.6
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.51
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.5
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.48
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.48
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.45
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.45
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.43
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.42
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.41
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.39
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.39
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.39
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.38
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.37
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.36
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.36
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.36
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.35
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.35
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.34
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.33
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.32
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.31
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.31
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.31
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.31
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.3
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.29
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.29
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.29
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.29
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.29
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.28
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.28
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.28
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.28
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.28
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.28
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.27
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.27
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.27
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.26
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.26
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.26
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.25
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.25
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.24
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.24
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.23
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.23
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.23
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.23
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.22
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.22
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.22
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.22
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.21
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.19
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.19
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.17
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.17
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.16
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.15
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.14
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.14
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.13
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.13
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.13
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.13
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.13
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.13
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.12
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.12
3ocj_A	305	Putative exported protein; structural genomics, PS	99.12
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.12
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.11
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.11
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.11
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.1
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.1
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.09
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.09
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.08
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.08
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.08
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.07
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.07
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.07
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.06
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	99.06
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.06
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	99.06
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.05
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.04
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.03
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.01
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.01
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.01
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.0
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.99
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.99
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.99
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.99
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.98
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.97
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.97
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.97
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.97
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.97
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.95
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.95
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.95
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.94
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.94
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.93
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.93
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.92
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.92
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.92
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.92
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.91
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.91
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.91
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.9
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.9
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.9
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.9
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.89
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.88
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.88
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.87
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.87
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.86
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.86
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.86
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.85
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.85
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.84
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.84
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.84
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.84
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.84
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.83
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.83
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.82
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.81
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.8
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.8
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.8
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.8
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.8
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.79
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.79
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.78
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.78
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.77
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.77
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.77
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.76
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.76
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.76
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.76
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.75
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.75
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.75
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.74
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.74
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.74
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.74
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.74
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.74
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.74
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.73
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.73
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.72
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.71
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.7
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.69
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.68
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.68
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.67
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.66
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.66
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.66
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.65
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.64
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.62
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.61
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.61
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.61
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.61
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.61
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.6
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.59
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.59
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.58
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.57
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.55
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.55
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.54
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.54
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.51
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.51
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.51
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.49
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.48
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.48
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.46
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.45
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.45
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.44
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.44
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.43
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.42
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.4
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.4
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.4
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.38
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.35
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.34
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.3
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.3
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.29
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.28
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.26
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.25
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.23
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.23
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.2
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.2
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.18
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.16
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.16
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.15
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.07
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.07
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.06
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.04
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.03
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.02
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.97
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.96
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.94
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.93
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.9
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.89
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.86
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.83
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.83
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.8
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.77
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.75
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.55
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.51
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.5
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.48
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.47
3khk_A	544	Type I restriction-modification system methylation	97.44
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.43
3lkd_A	542	Type I restriction-modification system methyltrans	97.38
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.37
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.37
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.29
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.28
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.21
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.16
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.11
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.11
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	97.1
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.91
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.91
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	96.85
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	96.56
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.51
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.47
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	96.42
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.4
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.38
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.31
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.28
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.27
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	96.2
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.15
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.15
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.12
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.12
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.11
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.07
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.04
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.96
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.9
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.85
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.84
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.73
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.72
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.72
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.71
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.7
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.67
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.65
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.64
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.64
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.64
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.6
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.57
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.46
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.45
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.41
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.37
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.31
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.28
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.28
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.28
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.26
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.22
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.07
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.96
3eod_A	130	Protein HNR; response regulator, phosphoprotein, t	94.8
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.78
3cg0_A	140	Response regulator receiver modulated diguanylate	94.77
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	94.74
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.7
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.6
2qr3_A	140	Two-component system response regulator; structura	94.53
2rjn_A	154	Response regulator receiver:metal-dependent phosph	94.52
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	94.52
3eul_A	152	Possible nitrate/nitrite response transcriptional	94.5
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.44
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.3
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	94.25
3lua_A	140	Response regulator receiver protein; two-component	94.19
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	94.16
2gkg_A	127	Response regulator homolog; social motility, recei	94.1
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	94.09
3hv2_A	153	Response regulator/HD domain protein; PSI-2, NYSGX	94.01
2b4a_A	138	BH3024; flavodoxin-like fold, structural genomics,	93.94
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	93.88
3ufb_A	530	Type I restriction-modification system methyltran	93.82
3f6c_A	134	Positive transcription regulator EVGA; structural	93.79
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	93.74
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	93.62
3grc_A	140	Sensor protein, kinase; protein structure initiati	93.43
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.43
3kto_A	136	Response regulator receiver protein; PSI-II,struct	93.42
3rqi_A	184	Response regulator protein; structural genomics, s	93.41
2zay_A	147	Response regulator receiver protein; structural ge	93.39
3lte_A	132	Response regulator; structural genomics, PSI, prot	93.36
3gl9_A	122	Response regulator; beta-sheet, surrounded by alph	93.33
3f6p_A	120	Transcriptional regulatory protein YYCF; unphospho	93.23
3kht_A	144	Response regulator; PSI-II, 11023K, structural gen	93.18
1qkk_A	155	DCTD, C4-dicarboxylate transport transcriptional r	93.11
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	93.11
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	93.1
3cz5_A	153	Two-component response regulator, LUXR family; str	93.09
3gt7_A	154	Sensor protein; structural genomics, signal receiv	92.82
2qxy_A	142	Response regulator; regulation of transcription, N	92.8
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.8
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.78
3i42_A	127	Response regulator receiver domain protein (CHEY-	92.73
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	92.7
1dz3_A	130	Stage 0 sporulation protein A; response regulator,	92.65
3cg4_A	142	Response regulator receiver domain protein (CHEY-;	92.63
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	92.57
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	92.42
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	92.26
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	92.26
3ilh_A	146	Two component response regulator; NYSGXRC, PSI-II,	92.16
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	92.06
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	91.99
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	91.97
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	91.93
3mm4_A	206	Histidine kinase homolog; receiver domain, CKI1, c	91.89
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	91.89
3cnb_A	143	DNA-binding response regulator, MERR family; signa	91.82
1tmy_A	120	CHEY protein, TMY; chemotaxis, phosphoryl transfer	91.75
3a10_A	116	Response regulator; phosphoacceptor, signaling pro	91.71
2pln_A	137	HP1043, response regulator; signaling protein; 1.8	91.59
2r25_B	133	Osmosensing histidine protein kinase SLN1; alpha5-	91.49
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	91.48
3r0j_A	250	Possible two component system response transcript	91.44
2lpm_A	123	Two-component response regulator; transcription re	91.38
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	91.31
3hdv_A	136	Response regulator; PSI-II, structural genomics, P	91.3
2rdm_A	132	Response regulator receiver protein; structural ge	91.28
3crn_A	132	Response regulator receiver domain protein, CHEY-;	91.28
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	91.26
3h5i_A	140	Response regulator/sensory box protein/ggdef domai	91.15
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	91.14
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	90.96
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	90.92
3t6k_A	136	Response regulator receiver; flavodoxin-like, stru	90.76
3hdg_A	137	Uncharacterized protein; two-component sensor acti	90.74
1k68_A	140	Phytochrome response regulator RCPA; phosphorylate	90.65
3n0r_A	286	Response regulator; sigma factor, receiver, two-co	90.56
3kyj_B	145	CHEY6 protein, putative histidine protein kinase;	90.56
3cfy_A	137	Putative LUXO repressor protein; structural genomi	90.53
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	90.51
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	90.5
3c3m_A	138	Response regulator receiver protein; structural ge	90.31
3t8y_A	164	CHEB, chemotaxis response regulator protein-glutam	90.28
2j48_A	119	Two-component sensor kinase; pseudo-receiver, circ	90.11
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	90.1
3cu5_A	141	Two component transcriptional regulator, ARAC FAM;	90.04
1dbw_A	126	Transcriptional regulatory protein FIXJ; doubly wo	90.0
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	89.89
1s8n_A	205	Putative antiterminator; RV1626, structural genomi	89.84
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	89.81
4dad_A	146	Putative pilus assembly-related protein; response	89.68
3heb_A	152	Response regulator receiver domain protein (CHEY);	89.64
3m6m_D	143	Sensory/regulatory protein RPFC; RPFF, REC, enoyl-	89.54
1srr_A	124	SPO0F, sporulation response regulatory protein; as	89.5
1k66_A	149	Phytochrome response regulator RCPB; CHEY homologu	89.48
2qzj_A	136	Two-component response regulator; 11017X, PSI-II,	89.47
3snk_A	135	Response regulator CHEY-like protein; P-loop conta	89.32
2qv0_A	143	Protein MRKE; structural genomics, transcription,	89.17
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	89.17
1mvo_A	136	PHOP response regulator; phosphate regulon, transc	89.15
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	89.15
1mb3_A	124	Cell division response regulator DIVK; signal tran	89.04
1yio_A	208	Response regulatory protein; transcription regulat	89.02
1ys7_A	233	Transcriptional regulatory protein PRRA; response	88.97
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	88.94
2qsj_A	154	DNA-binding response regulator, LUXR family; struc	88.92
1kgs_A	225	DRRD, DNA binding response regulator D; DNA-bindin	88.78
2ayx_A	254	Sensor kinase protein RCSC; two independent struct	88.61
3jte_A	143	Response regulator receiver protein; structural ge	88.58
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	88.53
1zgz_A	122	Torcad operon transcriptional regulatory protein;	87.75
3kcn_A	151	Adenylate cyclase homolog; SGX, PSI 2, structural	87.75
3b2n_A	133	Uncharacterized protein Q99UF4; structural genomic	87.7
2a9o_A	120	Response regulator; essential protein, YYCF/YYCG h	87.67
1xhf_A	123	DYE resistance, aerobic respiration control protei	87.46
3q9s_A	249	DNA-binding response regulator; DNA binding protei	87.42
2qvg_A	143	Two component response regulator; NYSGXRC, PSI-2,	87.36
2pl1_A	121	Transcriptional regulatory protein PHOP; CHEY-like	87.26
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	87.2
3c85_A	183	Putative glutathione-regulated potassium-efflux S	86.68
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	86.48
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	86.45
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	86.33
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	86.32
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	86.19
1i3c_A	149	Response regulator RCP1; phytochrome, signaling pr	86.13
1p6q_A	129	CHEY2; chemotaxis, signal transduction, response r	86.09
3c3w_A	225	Two component transcriptional regulatory protein;	86.07
3c97_A	140	Signal transduction histidine kinase; structural g	86.03
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	85.94
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	85.74
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	85.51
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	85.45
2oqr_A	230	Sensory transduction protein REGX3; response regul	85.15
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	85.06
1a04_A	215	Nitrate/nitrite response regulator protein NARL; s	85.03
3nhm_A	133	Response regulator; protein structure initiative I	84.46
1jbe_A	128	Chemotaxis protein CHEY; signaling protein; 1.08A	84.37
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	84.22
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	83.99
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	83.09
2gwr_A	238	DNA-binding response regulator MTRA; two-component	82.99
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	82.73
2jba_A	127	Phosphate regulon transcriptional regulatory PROT;	82.69
3n53_A	140	Response regulator receiver modulated diguanylate;	82.37
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	82.34
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	82.09
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	82.02
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	81.92
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	81.89
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	81.77
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	81.73
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	81.54
4gua_A	670	Non-structural polyprotein; viral precursor polypr	81.53
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	81.46
3h1g_A	129	Chemotaxis protein CHEY homolog; sulfate-bound CHE	81.38
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	81.19
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	81.17
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	81.13
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	80.83
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	80.83
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	80.49
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	80.25
3eq2_A	394	Probable two-component response regulator; adaptor	80.11

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.96  E-value=7e-29  Score=182.20  Aligned_cols=144  Identities=22%  Similarity=0.347  Sum_probs=128.3

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |.+|..++.+. ++++|+++|+++++++.|++++++.|+. ++++++.+|+.+.++.+.     .++||+||+|+.+..+
T Consensus        68 G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~-----~~~fD~V~~d~~~~~~  142 (221)
T 3dr5_A           68 GLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA-----NDSYQLVFGQVSPMDL  142 (221)
T ss_dssp             HHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC-----TTCEEEEEECCCTTTH
T ss_pred             hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc-----CCCcCeEEEcCcHHHH
Confidence            77888888876 4899999999999999999999999998 799999999999877542     4689999999999899


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      ..+++.+.++|+|||+++++|++|+|.+..|...      ......+++|++.+.++|++.++++|+|||+.+++|-
T Consensus       143 ~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~~~~~~  213 (221)
T 3dr5_A          143 KALVDAAWPLLRRGGALVLADALLDGTIADQTRK------DRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVTKA  213 (221)
T ss_dssp             HHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCC------CHHHHHHHHHHHHHTTCTTEEEEEESSTTCEEEEEEC
T ss_pred             HHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCC------ChHHHHHHHHHHHHhhCCCeeEEEeeccchHHHHHHH
Confidence            9999999999999999999999999998776421      1155678999999999999999999999999999973

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.96  E-value=5.5e-28  Score=178.95  Aligned_cols=155  Identities=60%  Similarity=1.003  Sum_probs=133.1

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|.+|..++...| +++|+++|+++++++.|++++++.|+.++++++.+|+.+.++.+.......++||+||+|+.+..+
T Consensus        81 ~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~~  160 (237)
T 3c3y_A           81 TGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNY  160 (237)
T ss_dssp             TSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGGGH
T ss_pred             CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchHHH
Confidence            4889999998876 899999999999999999999999998789999999999887653110003679999999998899


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      ..+++.+.++|+|||+++++|++|.|.+..|.+..++..++ ..+.+++|++.+.++|++.++++|++||+.+++|+
T Consensus       161 ~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~-~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~  236 (237)
T 3c3y_A          161 IKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKE-NREAVIELNKLLAADPRIEIVHLPLGDGITFCRRL  236 (237)
T ss_dssp             HHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHH-HHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHH-HHHHHHHHHHHHhcCCCeEEEEEEeCCceEEEEEc
Confidence            99999999999999999999999999987764322222333 67789999999999999999999999999999987

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.95  E-value=6.1e-28  Score=179.34  Aligned_cols=149  Identities=31%  Similarity=0.470  Sum_probs=130.7

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|.+|..++...+ +++|+++|+++++++.|+++++..|+.++++++.+|+.+.++.+... ...++||+||+|+.+..+
T Consensus        71 ~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~-~~~~~fD~V~~d~~~~~~  149 (242)
T 3r3h_A           71 TGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNE-GGEHQFDFIFIDADKTNY  149 (242)
T ss_dssp             CSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHH-HCSSCEEEEEEESCGGGH
T ss_pred             cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhc-cCCCCEeEEEEcCChHHh
Confidence            4888999998775 89999999999999999999999999889999999999988765210 003689999999998889


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      ..+++.+.++|+|||+++++|++|.|.+..|...      ....+.+++|++.+.++|+|.++++|++||+++++|+
T Consensus       150 ~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~  220 (242)
T 3r3h_A          150 LNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDT------SGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQPI  220 (242)
T ss_dssp             HHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCC------CHHHHHHHHHHHHHHTCCSEEEEEESSSSCEEEEEEC
T ss_pred             HHHHHHHHHhcCCCeEEEEECCccCCcccCcccc------ChHHHHHHHHHHHHhhCCCEEEEEEEccCceEEEEEc
Confidence            9999999999999999999999999998776532      1256789999999999999999999999999999986

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.95  E-value=4.9e-27  Score=174.93  Aligned_cols=155  Identities=52%  Similarity=0.882  Sum_probs=131.9

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|.+|..++...| +++|+++|+++++++.|++++++.|+.++++++.+|+.+.++.+.+.....++||+||+|+.+..+
T Consensus        90 ~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~~  169 (247)
T 1sui_A           90 TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNY  169 (247)
T ss_dssp             GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTTH
T ss_pred             cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchHHH
Confidence            3788999998876 899999999999999999999999998899999999999887652100003679999999998889


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCc-ccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHF-RGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      ..+++.+.++|+|||+++++|++|.|.+..|....++.. ++ ..+.+++|+..+..++++.++++|++||+.+++|+
T Consensus       170 ~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~-~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~l~~k~  246 (247)
T 1sui_A          170 LNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRY-YRDFVLELNKALAVDPRIEICMLPVGDGITICRRI  246 (247)
T ss_dssp             HHHHHHHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHH-HHHHHHHHHHHHHTCTTBCCEEECSTTCEEEECBC
T ss_pred             HHHHHHHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhH-HHHHHHHHHHHHhhCCCeEEEEEecCCccEEEEEc
Confidence            999999999999999999999999999887754322211 22 56789999999999999999999999999999986

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.95  E-value=4.1e-27  Score=173.57  Aligned_cols=149  Identities=21%  Similarity=0.310  Sum_probs=130.4

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHH-HHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~-~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|.+|..++...|+++|+++|+++++++.|+++++..++.++++++.+|+.+.++ .+      .++||+||+|+....+
T Consensus        82 ~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~fD~V~~~~~~~~~  155 (232)
T 3ntv_A           82 IGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN------DKVYDMIFIDAAKAQS  155 (232)
T ss_dssp             SSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT------TSCEEEEEEETTSSSH
T ss_pred             hhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc------cCCccEEEEcCcHHHH
Confidence            4788888888778999999999999999999999999998899999999998877 54      4689999999998899


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      ..+++.+.++|+|||+++++|++|.|.+..+....+++.+. ..+.+++|++.+..++++.++++|++||+.+++|+
T Consensus       156 ~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~i~~k~  231 (232)
T 3ntv_A          156 KKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQ-MVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKG  231 (232)
T ss_dssp             HHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHH-HHHHHHHHHHHHHTCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhH-HHHHHHHHHHHHhcCCCeEEEEEEcCCceEEEEEC
Confidence            99999999999999999999999999887664311221122 56789999999999999999999999999999986

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.94  E-value=1e-25  Score=166.08  Aligned_cols=147  Identities=36%  Similarity=0.505  Sum_probs=129.8

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCC--CceeEEEEcCCCc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE--GSFDYAFVDADKD   77 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~--~~fD~I~iD~~~~   77 (157)
                      .|.+|..++...| +++|+++|+++++++.|+++++..|+.++++++.+|+.+.++.+..   ..  ++||+||+|+.+.
T Consensus        83 ~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~---~~~~~~fD~V~~d~~~~  159 (232)
T 3cbg_A           83 RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ---GKPLPEFDLIFIDADKR  159 (232)
T ss_dssp             TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHT---SSSCCCEEEEEECSCGG
T ss_pred             CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh---cCCCCCcCEEEECCCHH
Confidence            4788888888776 7899999999999999999999999987899999999988876631   12  6899999999888


Q ss_pred             ccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      .+..+++.+.++|+|||+++++|+.|.|.+..|...      ....+.+++|++.+..+|++.++++|++||+.+++|+
T Consensus       160 ~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~  232 (232)
T 3cbg_A          160 NYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQ------EAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK  232 (232)
T ss_dssp             GHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCC------SHHHHHHHHHHHHHTTCTTEEEEEECSBTCEEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccC------ChHHHHHHHHHHHHhhCCCeEEEEEEcCCeEEEEEeC
Confidence            899999999999999999999999999998776421      1267889999999999999999999999999999985

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.94  E-value=1.4e-25  Score=163.86  Aligned_cols=149  Identities=29%  Similarity=0.385  Sum_probs=129.6

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|.+|..++...| +++|+++|+++++++.|+++++..++.++++++.+|+.+.++.+... ...++||+||+|+....+
T Consensus        75 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~~~fD~v~~~~~~~~~  153 (225)
T 3tr6_A           75 TGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHA-GQAWQYDLIYIDADKANT  153 (225)
T ss_dssp             TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTT-TCTTCEEEEEECSCGGGH
T ss_pred             chHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhc-cCCCCccEEEECCCHHHH
Confidence            4778888888776 89999999999999999999999999888999999999988765310 001689999999988889


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      ..+++.+.++|+|||+++++|+.|.|.+..+...      ....+.+++|++.+..++++.++++|+++|+.+++|+
T Consensus       154 ~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~  224 (225)
T 3tr6_A          154 DLYYEESLKLLREGGLIAVDNVLRRGQVADEENQ------SENNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK  224 (225)
T ss_dssp             HHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCC------CHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHHHHhcCCCcEEEEeCCCcCCcccCcccc------ChHHHHHHHHHHHHhcCCCeEEEEEEcCCccEEEEEC
Confidence            9999999999999999999999999988766431      1267789999999999999999999999999999986

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.94  E-value=3e-25  Score=162.49  Aligned_cols=149  Identities=33%  Similarity=0.526  Sum_probs=129.1

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      +|.+|..++...+ +++|+++|+++++++.|+++++..|+.++++++.+|+.+.++.+... ...++||+||+|+....+
T Consensus        80 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~-~~~~~~D~v~~d~~~~~~  158 (229)
T 2avd_A           80 TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA-GEAGTFDVAVVDADKENC  158 (229)
T ss_dssp             TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT-TCTTCEEEEEECSCSTTH
T ss_pred             ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhc-CCCCCccEEEECCCHHHH
Confidence            4778888888766 88999999999999999999999998789999999999887765310 001689999999988889


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      ..+++.+.++|+|||+++++|+.|.|.+..|...      ....+.+++|++.+..++++.++++|++||+.+++|+
T Consensus       159 ~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~lp~~dGl~~~~k~  229 (229)
T 2avd_A          159 SAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKG------DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI  229 (229)
T ss_dssp             HHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTT------CHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHHHHHcCCCeEEEEECCCcCCcccCcccC------ChHHHHHHHHHHHHhhCCCEEEEEEecCCceEEEEEC
Confidence            9999999999999999999999999988765421      1267889999999999999999999999999999985

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.94  E-value=4.6e-25  Score=164.18  Aligned_cols=146  Identities=23%  Similarity=0.348  Sum_probs=128.8

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|.+|..++...| +++|+++|+++++++.|++++++.|+.++++++.+|+.+.++.+.    ..++||+||+|+....+
T Consensus        74 ~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~----~~~~fD~V~~d~~~~~~  149 (248)
T 3tfw_A           74 GGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG----ECPAFDLIFIDADKPNN  149 (248)
T ss_dssp             TSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC----SCCCCSEEEECSCGGGH
T ss_pred             chHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC----CCCCeEEEEECCchHHH
Confidence            4788888988877 899999999999999999999999998899999999999887542    13489999999998889


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEee-ecC----CeeEEEE
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV-ALG----DGITICR  154 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-p~~----~G~~v~~  154 (157)
                      ..+++.+.++|+|||+++++|+.+.|.+..+...      ....+.+++|++.+..+|++.++++ |+|    ||+.+++
T Consensus       150 ~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~DG~~i~~  223 (248)
T 3tfw_A          150 PHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSA------DERVQGVRQFIEMMGAEPRLTATALQTVGTKGWDGFTLAW  223 (248)
T ss_dssp             HHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCC------CHHHHHHHHHHHHHHHCTTEEEEEEEECSTTCSEEEEEEE
T ss_pred             HHHHHHHHHhcCCCeEEEEeCCCcCCcccCcccc------chHHHHHHHHHHHHhhCCCEEEEEeecCCCCCCCeeEEEE
Confidence            9999999999999999999999999998776531      1267889999999999999999988 666    9999999


Q ss_pred             Ee
Q 031568          155 RI  156 (157)
Q Consensus       155 ~~  156 (157)
                      ++
T Consensus       224 ~~  225 (248)
T 3tfw_A          224 VN  225 (248)
T ss_dssp             EC
T ss_pred             Ee
Confidence            85

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.93  E-value=8.5e-25  Score=159.61  Aligned_cols=148  Identities=23%  Similarity=0.316  Sum_probs=129.7

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|.+|..++...| +++|+++|+++++++.|++++++.|+.++++++.+|+.+.++.+...  ..++||+||+|+....+
T Consensus        69 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~fD~v~~d~~~~~~  146 (223)
T 3duw_A           69 GGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENE--KYEPFDFIFIDADKQNN  146 (223)
T ss_dssp             TSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT--TCCCCSEEEECSCGGGH
T ss_pred             ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc--CCCCcCEEEEcCCcHHH
Confidence            4788888988877 89999999999999999999999999888999999999987765321  01579999999998888


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeec-----CCeeEEEE
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL-----GDGITICR  154 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-----~~G~~v~~  154 (157)
                      ..+++.+.++|+|||+++++|+.+.|.+..+...      ....+.+++|++.+..++++.++++|+     +||+.+++
T Consensus       147 ~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~dG~~~~~  220 (223)
T 3duw_A          147 PAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSN------DPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAV  220 (223)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCC------CHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCcEEEEeCCCcCCcccCcccc------chHHHHHHHHHHHHhhCCCeEEEEEeccCCCCCCeeEEEE
Confidence            9999999999999999999999999988766431      126778999999999999999999999     99999999


Q ss_pred             Ee
Q 031568          155 RI  156 (157)
Q Consensus       155 ~~  156 (157)
                      ++
T Consensus       221 ~~  222 (223)
T 3duw_A          221 VK  222 (223)
T ss_dssp             EC
T ss_pred             Ee
Confidence            75

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.91  E-value=6.5e-24  Score=153.82  Aligned_cols=142  Identities=19%  Similarity=0.301  Sum_probs=118.5

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|.+|..++...+ +++|+++|+++++++.|+++++..++.++++++.+|+.+.++.+      .+ ||+||+|+....+
T Consensus        67 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~-fD~v~~~~~~~~~  139 (210)
T 3c3p_A           67 LGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ------RD-IDILFMDCDVFNG  139 (210)
T ss_dssp             GGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC------CS-EEEEEEETTTSCH
T ss_pred             ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC------CC-CCEEEEcCChhhh
Confidence            3778888888776 89999999999999999999999998778999999999877643      45 9999999988889


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      ..+++.+.++|+|||+++++|+.|.|.+..+ ..     . ...+.+++|++.+..++++.++++|+++|+.+++|+
T Consensus       140 ~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~-~~-----~-~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~~~~~~  209 (210)
T 3c3p_A          140 ADVLERMNRCLAKNALLIAVNALRRGSVAES-HE-----D-PETAALREFNHHLSRRRDFFTTIVPVGNGVLLGYRL  209 (210)
T ss_dssp             HHHHHHHGGGEEEEEEEEEESSSSCC-------------------CCCHHHHHHTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHHHHhcCCCeEEEEECccccCcccCc-cc-----c-hHHHHHHHHHHHHhhCCCeEEEEEecCCceEEEEeC
Confidence            9999999999999999999999998876533 11     1 145568899999999999999999999999999985

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.91  E-value=7.3e-23  Score=151.13  Aligned_cols=151  Identities=32%  Similarity=0.450  Sum_probs=128.1

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc--------CCC-C-CceeE
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY--------SEN-E-GSFDY   69 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~--------~~~-~-~~fD~   69 (157)
                      .|.+|..++...+ +++|+++|+++.+++.|+++++..|+.++++++.+|+.+.++.+...        .-+ . ++||+
T Consensus        71 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~  150 (239)
T 2hnk_A           71 TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDL  150 (239)
T ss_dssp             TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEE
T ss_pred             CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCE
Confidence            3778888888776 78999999999999999999999998778999999999877654210        000 1 68999


Q ss_pred             EEEcCCCcccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCe
Q 031568           70 AFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG  149 (157)
Q Consensus        70 I~iD~~~~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G  149 (157)
                      ||++.....+..+++.+.++|+|||+++++++.|.|.+..|...      ......+++|++.+..++++.++++|+++|
T Consensus       151 I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g  224 (239)
T 2hnk_A          151 FFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQ------EPSTVGIRKFNELVYNDSLVDVSLVPIADG  224 (239)
T ss_dssp             EEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCC------CHHHHHHHHHHHHHHHCTTEEEEEECSTTC
T ss_pred             EEEeCCHHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCcccc------chHHHHHHHHHHHHhhCCCeEEEEEEcCCc
Confidence            99999888888999999999999999999999999988766421      126778999999999999999999999999


Q ss_pred             eEEEEEeC
Q 031568          150 ITICRRIF  157 (157)
Q Consensus       150 ~~v~~~~~  157 (157)
                      +.+++|+.
T Consensus       225 ~~~~~~~~  232 (239)
T 2hnk_A          225 VSLVRKRL  232 (239)
T ss_dssp             EEEEEECC
T ss_pred             eEeeeehh
Confidence            99999864

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.89  E-value=2.1e-22  Score=147.98  Aligned_cols=150  Identities=23%  Similarity=0.352  Sum_probs=112.6

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      .|..+..++...|+++|+++|+++.+++.|+++++..|+.++++++.+|+.+.++...    ..++||+||++.....+.
T Consensus        65 ~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~----~~~~fD~I~~~~~~~~~~  140 (233)
T 2gpy_A           65 IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE----LYPLFDVLFIDAAKGQYR  140 (233)
T ss_dssp             TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT----TSCCEEEEEEEGGGSCHH
T ss_pred             CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc----cCCCccEEEECCCHHHHH
Confidence            3777888888888999999999999999999999999987789999999998766541    135799999998877888


Q ss_pred             HHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      .+++.+.++|+|||+++++|+.|.|.+..++. .+++.+. ....+++|+..+..++++.++++|+++|+.+++|+
T Consensus       141 ~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~p~~dG~~~~~~~  214 (233)
T 2gpy_A          141 RFFDMYSPMVRPGGLILSDNVLFRGLVAETDI-EHKRHKQ-LATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKR  214 (233)
T ss_dssp             HHHHHHGGGEEEEEEEEEETTTC---------------------------CTTTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHHHHcCCCeEEEEEcCCcCCccCCccc-cccchhH-HHHHHHHHHHHHHhCCCeEEEEEEcCCeEEEEEEc
Confidence            99999999999999999999999887654431 1111111 44568889889999999999999999999999975

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.87  E-value=2.2e-21  Score=141.58  Aligned_cols=134  Identities=19%  Similarity=0.257  Sum_probs=110.3

Q ss_pred             CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|.+|..++... ++++|+++|+++++++.|++|++..++.++++++.+|+.+.++.+... ...++||+||+|+....+
T Consensus        69 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~-~~~~~fD~V~~d~~~~~~  147 (221)
T 3u81_A           69 CGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK-YDVDTLDMVFLDHWKDRY  147 (221)
T ss_dssp             TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTT-SCCCCCSEEEECSCGGGH
T ss_pred             CCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHh-cCCCceEEEEEcCCcccc
Confidence            477888888865 489999999999999999999999999888999999999887754200 001689999999987777


Q ss_pred             HHH---HHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeee-------cCCe
Q 031568           80 CNY---HERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVA-------LGDG  149 (157)
Q Consensus        80 ~~~---~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p-------~~~G  149 (157)
                      ...   ++.+ ++|+|||+++++|+.+.+                    .++|++.+.++++|.++++|       ++||
T Consensus       148 ~~~~~~~~~~-~~LkpgG~lv~~~~~~~~--------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG  206 (221)
T 3u81_A          148 LPDTLLLEKC-GLLRKGTVLLADNVIVPG--------------------TPDFLAYVRGSSSFECTHYSSYLEYMKVVDG  206 (221)
T ss_dssp             HHHHHHHHHT-TCCCTTCEEEESCCCCCC--------------------CHHHHHHHHHCTTEEEEEEEEEETTTTEEEE
T ss_pred             hHHHHHHHhc-cccCCCeEEEEeCCCCcc--------------------hHHHHHHHhhCCCceEEEcccccccCCCCCc
Confidence            654   4444 899999999999987643                    25777888899999999999       7999


Q ss_pred             eEEEEEe
Q 031568          150 ITICRRI  156 (157)
Q Consensus       150 ~~v~~~~  156 (157)
                      +.+++++
T Consensus       207 ~~~~~~~  213 (221)
T 3u81_A          207 LEKAIYQ  213 (221)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEe
Confidence            9999875

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.77  E-value=1.1e-18  Score=125.97  Aligned_cols=122  Identities=8%  Similarity=-0.053  Sum_probs=94.1

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC--CCcEEEEEccHHHH--------------HHHHh----hc
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALSV--------------LDQLL----KY   60 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~--------------l~~~~----~~   60 (157)
                      +|+||+++|.. ++++|++||.|++.++.|++|++++|+  .++|+++.||+.+.              ++.+.    ..
T Consensus        39 tGySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~  117 (202)
T 3cvo_A           39 SGGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRT  117 (202)
T ss_dssp             CSHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGC
T ss_pred             chHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhcc
Confidence            48999999974 589999999999999999999999998  78999999997543              22211    00


Q ss_pred             CCCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCee
Q 031568           61 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ  140 (157)
Q Consensus        61 ~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  140 (157)
                       ...++||+||+|+.+.  ..++..+.++|+|||+|++||+.+++                +...+.+|...+...++..
T Consensus       118 -~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~GG~Iv~DNv~~r~----------------~y~~v~~~~~~~~~~~~~a  178 (202)
T 3cvo_A          118 -EGFRHPDVVLVDGRFR--VGCALATAFSITRPVTLLFDDYSQRR----------------WQHQVEEFLGAPLMIGRLA  178 (202)
T ss_dssp             -TTCCCCSEEEECSSSH--HHHHHHHHHHCSSCEEEEETTGGGCS----------------SGGGGHHHHCCCEEETTEE
T ss_pred             -ccCCCCCEEEEeCCCc--hhHHHHHHHhcCCCeEEEEeCCcCCc----------------chHHHHHHHhHHhhcCceE
Confidence             0136899999999865  36777888999999999999986543                3345778877666666654


Q ss_pred             EE
Q 031568          141 LS  142 (157)
Q Consensus       141 ~~  142 (157)
                      ..
T Consensus       179 ~f  180 (202)
T 3cvo_A          179 AF  180 (202)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.62  E-value=1.3e-15  Score=115.04  Aligned_cols=129  Identities=11%  Similarity=0.043  Sum_probs=98.5

Q ss_pred             CcccHHHHHhhC-----CCcEEEEEeCCh--------------------------hHHHHHHHHHHHcCCC-CcEEEEEc
Q 031568            1 MHLPTKLFMTGN-----KILQITAIDVNR--------------------------ETYEIGLPIIKKAGVD-HKINFIES   48 (157)
Q Consensus         1 ~g~st~~l~~~~-----~~~~v~~ve~~~--------------------------~~~~~a~~~~~~~~~~-~~i~~~~~   48 (157)
                      .|.|+++++...     ++.+|+++|..+                          ..++.+++|+++.|+. ++|+++.|
T Consensus       117 ~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl~~~~I~li~G  196 (282)
T 2wk1_A          117 RGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPG  196 (282)
T ss_dssp             TSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTCCSTTEEEEES
T ss_pred             chHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCCCcCceEEEEe
Confidence            488998887643     588999999642                          1478899999999994 89999999


Q ss_pred             cHHHHHHHHhhcCCCCCceeEEEEcCCC-cccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHH
Q 031568           49 EALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  127 (157)
Q Consensus        49 d~~~~l~~~~~~~~~~~~fD~I~iD~~~-~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (157)
                      ++.+.++.+.     .++||+||+|+++ ..+..+++.+.++|+|||+|++||+.+.     |         + ..++++
T Consensus       197 da~etL~~~~-----~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~~~~-----~---------G-~~~Av~  256 (282)
T 2wk1_A          197 WFKDTLPTAP-----IDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDYMMC-----P---------P-CKDAVD  256 (282)
T ss_dssp             CHHHHSTTCC-----CCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSCTTC-----H---------H-HHHHHH
T ss_pred             CHHHHHhhCC-----CCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCCCCC-----H---------H-HHHHHH
Confidence            9999988652     4689999999987 3467889999999999999999998531     1         1 455666


Q ss_pred             HHHHHhhcCCCeeEEeeecCCeeEEE
Q 031568          128 DLNRSLADDPRVQLSHVALGDGITIC  153 (157)
Q Consensus       128 ~~~~~l~~~~~~~~~~~p~~~G~~v~  153 (157)
                      +|++    ..++...+.+++.+...-
T Consensus       257 Ef~~----~~~i~~~i~~~~~~~v~~  278 (282)
T 2wk1_A          257 EYRA----KFDIADELITIDRDGVYW  278 (282)
T ss_dssp             HHHH----HTTCCSCCEECSSSCEEE
T ss_pred             HHHH----hcCCceEEEEecCEEEEE
Confidence            6653    334566688887654433

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.62  E-value=4e-15  Score=113.69  Aligned_cols=134  Identities=12%  Similarity=0.225  Sum_probs=101.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH--cCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-   77 (157)
                      |..+..++...+..+|++||+++++++.|++++..  .++ .++++++.+|+.++++..      .++||+|++|+..+ 
T Consensus       107 G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~------~~~fD~Ii~d~~~~~  180 (304)
T 2o07_A          107 GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------QDAFDVIITDSSDPM  180 (304)
T ss_dssp             SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------SSCEEEEEEECC---
T ss_pred             hHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC------CCCceEEEECCCCCC
Confidence            55555566555779999999999999999999876  344 468999999999987642      56899999997542 


Q ss_pred             ------ccHHHHHHHHhcccCCeEEEEecc-cCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeec---C
Q 031568           78 ------NYCNYHERLMKLLKVGGIAVYDNT-LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL---G  147 (157)
Q Consensus        78 ------~~~~~~~~~~~~L~~gG~iv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~---~  147 (157)
                            ...++++.+.++|+|||++++++. .|...              ...+.++++++.+..+.++..+.+|.   |
T Consensus       181 ~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~--------------~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g  246 (304)
T 2o07_A          181 GPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHL--------------DLIKEMRQFCQSLFPVVAYAYCTIPTYPSG  246 (304)
T ss_dssp             --------CHHHHHHHHHEEEEEEEEEEEECTTTCH--------------HHHHHHHHHHHHHCSEEEEEEEECTTSGGG
T ss_pred             CcchhhhHHHHHHHHHhccCCCeEEEEecCCcccch--------------HHHHHHHHHHHHhCCCceeEEEEeccccCc
Confidence                  235689999999999999999763 23210              15567888888888888888888887   3


Q ss_pred             -CeeEEEEE
Q 031568          148 -DGITICRR  155 (157)
Q Consensus       148 -~G~~v~~~  155 (157)
                       .|+.++.|
T Consensus       247 ~~g~~~as~  255 (304)
T 2o07_A          247 QIGFMLCSK  255 (304)
T ss_dssp             EEEEEEEES
T ss_pred             ceEEEEEeC
Confidence             58888765

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.60  E-value=3.4e-15  Score=114.57  Aligned_cols=135  Identities=17%  Similarity=0.264  Sum_probs=98.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-   77 (157)
                      |..+..+++..+..+|+++|+++.+++.|++++...  ++ .++++++.+|+.++++..      .++||+|++|+..+ 
T Consensus       120 G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~~~fD~Ii~d~~~~~  193 (314)
T 2b2c_A          120 GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------KNEFDVIITDSSDPV  193 (314)
T ss_dssp             SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------TTCEEEEEECCC---
T ss_pred             CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------CCCceEEEEcCCCCC
Confidence            555556666657899999999999999999998764  44 468999999999987652      56899999997421 


Q ss_pred             -----cc-HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeec---CC
Q 031568           78 -----NY-CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL---GD  148 (157)
Q Consensus        78 -----~~-~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~---~~  148 (157)
                           .+ .++++.+.++|+|||++++++..    ...         .......+.++++.+..+.++..+.+|.   |+
T Consensus       194 ~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~----~~~---------~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~  260 (314)
T 2b2c_A          194 GPAESLFGQSYYELLRDALKEDGILSSQGES----VWL---------HLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGS  260 (314)
T ss_dssp             ----------HHHHHHHHEEEEEEEEEECCC----TTT---------CHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGE
T ss_pred             CcchhhhHHHHHHHHHhhcCCCeEEEEECCC----ccc---------CHHHHHHHHHHHHHHCCcceEEEEEecCcCCCc
Confidence                 12 67899999999999999997521    100         0114556777777777777888888887   45


Q ss_pred             -eeEEEEE
Q 031568          149 -GITICRR  155 (157)
Q Consensus       149 -G~~v~~~  155 (157)
                       |+.++.|
T Consensus       261 ~g~~~ask  268 (314)
T 2b2c_A          261 MGYLICAK  268 (314)
T ss_dssp             EEEEEEES
T ss_pred             eEEEEEeC
Confidence             8888765

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.51  E-value=2.5e-13  Score=104.09  Aligned_cols=136  Identities=12%  Similarity=0.111  Sum_probs=96.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH--cC-C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK--AG-V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~--~~-~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      |..+..+++..+..+|++||+++.+++.|++++..  .+ + .++++++.+|+.++++..      .++||+|++|...+
T Consensus        89 G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~~fD~Ii~d~~~~  162 (314)
T 1uir_A           89 GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------EERYDVVIIDLTDP  162 (314)
T ss_dssp             SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------CCCEEEEEEECCCC
T ss_pred             CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc------CCCccEEEECCCCc
Confidence            44455555555688999999999999999999875  22 2 468999999999987653      56899999997543


Q ss_pred             c----------cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecC
Q 031568           78 N----------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG  147 (157)
Q Consensus        78 ~----------~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~  147 (157)
                      .          ..++++.+.++|+|||++++.......  ..+         . ..+.+.+.++.+..+..+..+.+|..
T Consensus       163 ~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--~~~---------~-~~~~~~~~l~~~F~~v~~~~~~vP~~  230 (314)
T 1uir_A          163 VGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILL--THH---------R-VHPVVHRTVREAFRYVRSYKNHIPGF  230 (314)
T ss_dssp             BSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC--------------C-HHHHHHHHHHTTCSEEEEEEEEEGGG
T ss_pred             ccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccc--cCH---------H-HHHHHHHHHHHHCCceEEEEEecCCC
Confidence            3          478899999999999999985321100  001         1 45556666666656666677788987


Q ss_pred             Ce---eEEEEE
Q 031568          148 DG---ITICRR  155 (157)
Q Consensus       148 ~G---~~v~~~  155 (157)
                      +|   +.++.|
T Consensus       231 ~g~~~~~~as~  241 (314)
T 1uir_A          231 FLNFGFLLASD  241 (314)
T ss_dssp             TEEEEEEEEES
T ss_pred             CCeEEEEEEEC
Confidence            66   555554

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.50  E-value=3.5e-13  Score=101.72  Aligned_cols=132  Identities=10%  Similarity=0.097  Sum_probs=93.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--CC--------CCcEEEEEccHHHHHHHHhhcCCCCCceeEEE
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--GV--------DHKINFIESEALSVLDQLLKYSENEGSFDYAF   71 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~--------~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~   71 (157)
                      |..+..++.. +..+|++||+++.+++.|++++ ..  ++        .++++++.+|+.++++.       .++||+|+
T Consensus        87 G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-------~~~fD~Ii  157 (281)
T 1mjf_A           87 GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-------NRGFDVII  157 (281)
T ss_dssp             SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-------CCCEEEEE
T ss_pred             CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-------cCCeeEEE
Confidence            4445555555 7889999999999999999998 44  33        46899999999988764       35799999


Q ss_pred             EcCCCc-----c--cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEee
Q 031568           72 VDADKD-----N--YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV  144 (157)
Q Consensus        72 iD~~~~-----~--~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  144 (157)
                      +|+..+     .  ..++++.+.++|+|||+++++....    ..         .....+.+.+.+..+..+..+..+.+
T Consensus       158 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~----~~---------~~~~~~~~~~~l~~~f~~v~~~~~~v  224 (281)
T 1mjf_A          158 ADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV----YL---------FTDELISAYKEMKKVFDRVYYYSFPV  224 (281)
T ss_dssp             EECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET----TT---------SHHHHHHHHHHHHHHCSEEEEEEECC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc----cc---------CHHHHHHHHHHHHHHCCceEEEEEec
Confidence            997531     1  4778999999999999999873211    00         00134455555555555566667778


Q ss_pred             ecCCe---eEEEEE
Q 031568          145 ALGDG---ITICRR  155 (157)
Q Consensus       145 p~~~G---~~v~~~  155 (157)
                      |..+|   +.++.|
T Consensus       225 P~~~g~~~~~~as~  238 (281)
T 1mjf_A          225 IGYASPWAFLVGVK  238 (281)
T ss_dssp             TTSSSSEEEEEEEE
T ss_pred             CCCCceEEEEEeeC
Confidence            87655   666665

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.48  E-value=2.9e-13  Score=102.75  Aligned_cols=87  Identities=15%  Similarity=0.273  Sum_probs=76.1

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE   84 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~   84 (157)
                      |++++++.++++|+++|+++++++.||+++++.|+ ++++++.+|+.++ +        +++||+||+++..+....+++
T Consensus       137 ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~--------d~~FDvV~~~a~~~d~~~~l~  206 (298)
T 3fpf_A          137 TGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D--------GLEFDVLMVAALAEPKRRVFR  206 (298)
T ss_dssp             HHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G--------GCCCSEEEECTTCSCHHHHHH
T ss_pred             HHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C--------CCCcCEEEECCCccCHHHHHH
Confidence            44445556799999999999999999999999999 7999999999874 2        468999999887777889999


Q ss_pred             HHHhcccCCeEEEEecc
Q 031568           85 RLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        85 ~~~~~L~~gG~iv~~~~  101 (157)
                      .+.+.|+|||++++.+.
T Consensus       207 el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          207 NIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             HHHHHCCTTCEEEEEEC
T ss_pred             HHHHHcCCCcEEEEEcC
Confidence            99999999999999764

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.48  E-value=4.6e-13  Score=103.48  Aligned_cols=97  Identities=19%  Similarity=0.395  Sum_probs=76.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-   77 (157)
                      |..+..++...+..+|+++|+++.+++.|++++...  ++ .++++++.+|+.++++.+     ..++||+|++|+..+ 
T Consensus       132 G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-----~~~~fDlIi~d~~~p~  206 (334)
T 1xj5_A          132 GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----AEGSYDAVIVDSSDPI  206 (334)
T ss_dssp             SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----CTTCEEEEEECCCCTT
T ss_pred             cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-----cCCCccEEEECCCCcc
Confidence            555555666657889999999999999999998763  44 358999999999987643     146899999987421 


Q ss_pred             ---c---cHHHHHHHHhcccCCeEEEEe-cccC
Q 031568           78 ---N---YCNYHERLMKLLKVGGIAVYD-NTLW  103 (157)
Q Consensus        78 ---~---~~~~~~~~~~~L~~gG~iv~~-~~~~  103 (157)
                         .   +.++++.+.++|+|||+++++ +..|
T Consensus       207 ~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~  239 (334)
T 1xj5_A          207 GPAKELFEKPFFQSVARALRPGGVVCTQAESLW  239 (334)
T ss_dssp             SGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             CcchhhhHHHHHHHHHHhcCCCcEEEEecCCcc
Confidence               1   478999999999999999996 4444

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.45  E-value=6.7e-13  Score=99.95  Aligned_cols=93  Identities=15%  Similarity=0.232  Sum_probs=73.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |..+..+++..+..+|++||+++.+++.|++++...  ++ .++++++.+|+.++++..      .++||+|++|...+.
T Consensus        87 G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~------~~~fD~Ii~d~~~~~  160 (275)
T 1iy9_A           87 GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------ENQYDVIMVDSTEPV  160 (275)
T ss_dssp             CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------CSCEEEEEESCSSCC
T ss_pred             HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------CCCeeEEEECCCCCC
Confidence            433444444446789999999999999999998652  34 368999999999987642      568999999975321


Q ss_pred             -------cHHHHHHHHhcccCCeEEEEec
Q 031568           79 -------YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 -------~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                             ..++++.+.+.|+|||++++..
T Consensus       161 ~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          161 GPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             SCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence                   2678999999999999999964

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.45  E-value=3.7e-12  Score=102.21  Aligned_cols=94  Identities=15%  Similarity=0.150  Sum_probs=77.1

Q ss_pred             cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |.-|+.+++..+ .++|+++|+++.+++.+++|++++|+.  ++++++|+.+.....      .++||+|++|++...  
T Consensus       113 G~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~------~~~FD~Il~D~PcSg~G  184 (464)
T 3m6w_A          113 GGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAF------GTYFHRVLLDAPCSGEG  184 (464)
T ss_dssp             CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHH------CSCEEEEEEECCCCCGG
T ss_pred             CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhc------cccCCEEEECCCcCCcc
Confidence            555677777654 589999999999999999999999985  999999998875433      578999999986421  


Q ss_pred             -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                             ...+++.+.++|+|||++++..+.+
T Consensus       185 ~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          185 MFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             GTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             ccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence                                   1567888899999999999987754

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.43  E-value=3.1e-12  Score=90.67  Aligned_cols=94  Identities=10%  Similarity=0.062  Sum_probs=75.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      |..+..+++ .+..+|+++|+++++++.|++|++..++ ++++++++|+.+..+.+.     .++||+|++|+....   
T Consensus        56 G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~-----~~~fD~i~~~~p~~~~~~  128 (189)
T 3p9n_A           56 GALGLEALS-RGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGT-----TSPVDLVLADPPYNVDSA  128 (189)
T ss_dssp             CHHHHHHHH-TTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCC-----SSCCSEEEECCCTTSCHH
T ss_pred             CHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhcc-----CCCccEEEECCCCCcchh
Confidence            444443443 4677999999999999999999999998 589999999999876542     578999999986433   


Q ss_pred             -cHHHHHHHHh--cccCCeEEEEeccc
Q 031568           79 -YCNYHERLMK--LLKVGGIAVYDNTL  102 (157)
Q Consensus        79 -~~~~~~~~~~--~L~~gG~iv~~~~~  102 (157)
                       +...++.+.+  +|+|||+++++...
T Consensus       129 ~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          129 DVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             HHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             hHHHHHHHHHhcCccCCCeEEEEEecC
Confidence             5667788877  99999999997643

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.42  E-value=4.6e-12  Score=101.50  Aligned_cols=95  Identities=16%  Similarity=0.146  Sum_probs=77.0

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |.-|+.+++.. +.++|+++|+++.+++.+++|++++|+. ++.++++|+.+..+..      .++||+|++|+++..  
T Consensus       117 Ggkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~------~~~FD~Il~DaPCSg~G  189 (456)
T 3m4x_A          117 GGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHF------SGFFDRIVVDAPCSGEG  189 (456)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHH------TTCEEEEEEECCCCCGG
T ss_pred             CHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhc------cccCCEEEECCCCCCcc
Confidence            44566666644 4689999999999999999999999996 7999999999875444      568999999986321  


Q ss_pred             -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                             ...+++.+.++|+|||.+++..+..
T Consensus       190 ~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          190 MFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             GTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             ccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence                                   1256888889999999999987754

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.41  E-value=8.5e-12  Score=91.71  Aligned_cols=93  Identities=15%  Similarity=0.095  Sum_probs=76.9

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      .|..+..++...++.+|+++|+++++++.|+++++..++. +++++++|+.+......    ..++||+|+++.. ..+.
T Consensus        81 ~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~----~~~~fD~V~~~~~-~~~~  154 (240)
T 1xdz_A           81 AGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKD----VRESYDIVTARAV-ARLS  154 (240)
T ss_dssp             SCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTT----TTTCEEEEEEECC-SCHH
T ss_pred             CCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhccccc----ccCCccEEEEecc-CCHH
Confidence            3677777887778999999999999999999999999986 69999999987531000    1368999999874 4678


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      .+++.+.++|+|||.+++.
T Consensus       155 ~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          155 VLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             HHHHHHGGGEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCEEEEE
Confidence            8999999999999999874

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.39  E-value=1.7e-12  Score=93.04  Aligned_cols=92  Identities=16%  Similarity=0.063  Sum_probs=79.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..++...|..+|+++|+++++++.|+++++..++ ++++++.+|+.+.++.       .++||+|+++.....+..
T Consensus        52 G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-------~~~~D~i~~~~~~~~~~~  123 (204)
T 3e05_A           52 ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDD-------LPDPDRVFIGGSGGMLEE  123 (204)
T ss_dssp             CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTT-------SCCCSEEEESCCTTCHHH
T ss_pred             CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhc-------CCCCCEEEECCCCcCHHH
Confidence            66677788787889999999999999999999999998 5899999999776542       367999999987667888


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 031568           82 YHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +++.+.+.|+|||.+++...
T Consensus       124 ~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          124 IIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             HHHHHHHHCCTTCEEEEEEC
T ss_pred             HHHHHHHhcCCCeEEEEEec
Confidence            99999999999999998654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.39  E-value=3.6e-12  Score=96.92  Aligned_cols=93  Identities=12%  Similarity=0.199  Sum_probs=71.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH--cCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-   77 (157)
                      |..+..++...+..+|+++|+++.+++.|++++..  .++ .++++++.+|+.++++..      .++||+|++|+..+ 
T Consensus       102 G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~~fD~Ii~d~~~~~  175 (296)
T 1inl_A          102 GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------KNEFDVIIIDSTDPT  175 (296)
T ss_dssp             CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------SSCEEEEEEEC----
T ss_pred             CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------CCCceEEEEcCCCcc
Confidence            43444455454688999999999999999999865  333 368999999999876532      46899999987533 


Q ss_pred             -------ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 -------NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 -------~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                             ...++++.+.++|+|||++++..
T Consensus       176 ~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          176 AGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             ------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence                   23688999999999999999963

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.39  E-value=1.1e-11  Score=90.28  Aligned_cols=94  Identities=14%  Similarity=0.202  Sum_probs=77.8

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc---CCCc
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD---ADKD   77 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD---~~~~   77 (157)
                      +|..+..++...|+.+|++||+++.+++.|+++++..++. +++++.+|+.+.++...    +.++||.|++.   +...
T Consensus        45 ~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~----~~~~~d~v~~~~~~p~~~  119 (218)
T 3dxy_A           45 MGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMI----PDNSLRMVQLFFPDPWHK  119 (218)
T ss_dssp             TCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHS----CTTCEEEEEEESCCCCCS
T ss_pred             ChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHc----CCCChheEEEeCCCCccc
Confidence            4777888888889999999999999999999999999886 69999999999877532    26789999986   2111


Q ss_pred             --c------cHHHHHHHHhcccCCeEEEEe
Q 031568           78 --N------YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 --~------~~~~~~~~~~~L~~gG~iv~~   99 (157)
                        .      ...+++.+.+.|+|||++++.
T Consensus       120 ~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          120 ARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             GGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence              1      235899999999999999874

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=1.9e-12  Score=99.19  Aligned_cols=93  Identities=14%  Similarity=0.133  Sum_probs=74.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      |..+..+++.+|+.+|++||+++.+++.||+++.... .++++++.+|+.+++..+     ..++||+|++|.....   
T Consensus       101 G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~-----~~~~fDvIi~D~~~~~~~~  174 (317)
T 3gjy_A          101 CTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESF-----TPASRDVIIRDVFAGAITP  174 (317)
T ss_dssp             GHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTC-----CTTCEEEEEECCSTTSCCC
T ss_pred             CHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhc-----cCCCCCEEEECCCCccccc
Confidence            4445556666799999999999999999999986532 468999999999988653     1468999999863221   


Q ss_pred             ----cHHHHHHHHhcccCCeEEEEec
Q 031568           79 ----YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ----~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                          ..++++.+.+.|+|||++++..
T Consensus       175 ~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          175 QNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             GGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence                2689999999999999999865

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.37  E-value=4.3e-12  Score=88.78  Aligned_cols=93  Identities=19%  Similarity=0.222  Sum_probs=74.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC--ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--~~~   79 (157)
                      |..+..++.. +..+|+++|+++.+++.|+++++..++.++++++.+|+.+.++..      .++||+|++++..  ...
T Consensus        43 G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~fD~i~~~~~~~~~~~  115 (177)
T 2esr_A           43 GGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL------TGRFDLVFLDPPYAKETI  115 (177)
T ss_dssp             CHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB------CSCEEEEEECCSSHHHHH
T ss_pred             CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh------cCCCCEEEECCCCCcchH
Confidence            4444445544 668999999999999999999999998778999999999877653      4679999999763  234


Q ss_pred             HHHHHHHH--hcccCCeEEEEecc
Q 031568           80 CNYHERLM--KLLKVGGIAVYDNT  101 (157)
Q Consensus        80 ~~~~~~~~--~~L~~gG~iv~~~~  101 (157)
                      .+.++.+.  ++|+|||++++...
T Consensus       116 ~~~~~~l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A          116 VATIEALAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             HHHHHHHHhCCCcCCCcEEEEEEC
Confidence            55666666  89999999998654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.36  E-value=2.5e-11  Score=91.16  Aligned_cols=98  Identities=24%  Similarity=0.180  Sum_probs=78.0

Q ss_pred             cccHHHHHhhCCC-cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568            2 HLPTKLFMTGNKI-LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---   77 (157)
Q Consensus         2 g~st~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---   77 (157)
                      |.-|..++...++ ++|+++|+++.+++.+++|+++.|+. +++++.+|+.+....+..   ..++||+|++|++..   
T Consensus        95 G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~---~~~~fD~Vl~d~Pcs~~g  170 (274)
T 3ajd_A           95 GGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLK---NEIFFDKILLDAPCSGNI  170 (274)
T ss_dssp             CHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHH---TTCCEEEEEEEECCC---
T ss_pred             cHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhh---ccccCCEEEEcCCCCCCc
Confidence            5566677776555 89999999999999999999999986 899999999887543210   145799999996432   


Q ss_pred             ------------------ccHHHHHHHHhcccCCeEEEEecccC
Q 031568           78 ------------------NYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        78 ------------------~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                        ....+++.+.++|+|||.+++..+..
T Consensus       171 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          171 IKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             ---------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence                              23678888999999999999987643

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.36  E-value=1.8e-11  Score=97.41  Aligned_cols=130  Identities=18%  Similarity=0.169  Sum_probs=96.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      |.-|..++...++++|+++|+++.+++.+++|+++.|+  +++++.+|+.+..+.+.     .++||+|++|++...   
T Consensus       258 G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~-----~~~fD~Vl~D~Pcsg~g~  330 (429)
T 1sqg_A          258 GGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCG-----EQQFDRILLDAPCSATGV  330 (429)
T ss_dssp             CHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHT-----TCCEEEEEEECCCCCGGG
T ss_pred             hHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcc-----cCCCCEEEEeCCCCcccc
Confidence            55677777777779999999999999999999999987  47899999987654332     468999999975421   


Q ss_pred             ----------------------cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 031568           79 ----------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD  136 (157)
Q Consensus        79 ----------------------~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  136 (157)
                                            ...+++.+.++|+|||.+++.++.+..     +         +....++.|+   ..+
T Consensus       331 ~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~-----~---------ene~~v~~~l---~~~  393 (429)
T 1sqg_A          331 IRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP-----E---------ENSLQIKAFL---QRT  393 (429)
T ss_dssp             TTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG-----G---------GTHHHHHHHH---HHC
T ss_pred             cCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh-----h---------hHHHHHHHHH---HhC
Confidence                                  136788889999999999998765421     1         1344566664   345


Q ss_pred             CCee-----------EEeeec---CCeeEEEEE
Q 031568          137 PRVQ-----------LSHVAL---GDGITICRR  155 (157)
Q Consensus       137 ~~~~-----------~~~~p~---~~G~~v~~~  155 (157)
                      |++.           ..++|-   +||+++++-
T Consensus       394 ~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l  426 (429)
T 1sqg_A          394 ADAELCETGTPEQPGKQNLPGAEEGDGFFYAKL  426 (429)
T ss_dssp             TTCEECSSBCSSSBSEEECCCTTSCCSEEEEEE
T ss_pred             CCCEEeCCCCCCCCeEEECCCCCCCCceEEEEE
Confidence            5543           246773   589999863

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.36  E-value=1.3e-12  Score=96.22  Aligned_cols=97  Identities=20%  Similarity=0.179  Sum_probs=77.4

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---   77 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---   77 (157)
                      +|+++..++... ..++++||++|.+++.|+++.+..+.  +++++.+|+.+.+..+     +.++||.|+.|....   
T Consensus        71 ~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~-----~~~~FD~i~~D~~~~~~~  142 (236)
T 3orh_A           71 MAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTL-----PDGHFDGILYDTYPLSEE  142 (236)
T ss_dssp             TSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGS-----CTTCEEEEEECCCCCBGG
T ss_pred             ccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccc-----cccCCceEEEeeeecccc
Confidence            577777777654 46899999999999999999887764  7899999999887655     367899999987422   


Q ss_pred             -----ccHHHHHHHHhcccCCeEEEEecccCCc
Q 031568           78 -----NYCNYHERLMKLLKVGGIAVYDNTLWGG  105 (157)
Q Consensus        78 -----~~~~~~~~~~~~L~~gG~iv~~~~~~~~  105 (157)
                           ....+++++.++|||||++++.|....+
T Consensus       143 ~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~  175 (236)
T 3orh_A          143 TWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG  175 (236)
T ss_dssp             GTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH
T ss_pred             hhhhcchhhhhhhhhheeCCCCEEEEEecCCch
Confidence                 2456788899999999999997755433

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.35  E-value=1.4e-11  Score=88.74  Aligned_cols=89  Identities=13%  Similarity=0.089  Sum_probs=74.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..++..  +.+|+++|+++++++.|+++++..++.++++++.+|+.+.++.       .++||+||+++.. ... 
T Consensus        67 G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-------~~~~D~v~~~~~~-~~~-  135 (204)
T 3njr_A           67 GSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD-------LPLPEAVFIGGGG-SQA-  135 (204)
T ss_dssp             CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT-------SCCCSEEEECSCC-CHH-
T ss_pred             CHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc-------CCCCCEEEECCcc-cHH-
Confidence            5555555555  8899999999999999999999999877899999999885542       3579999998754 344 


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 031568           82 YHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +++.+.+.|+|||.+++..+
T Consensus       136 ~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          136 LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             HHHHHHHHSCTTCEEEEEEC
T ss_pred             HHHHHHHhcCCCcEEEEEec
Confidence            89999999999999999754

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.34  E-value=4e-12  Score=88.68  Aligned_cols=92  Identities=17%  Similarity=0.175  Sum_probs=75.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..++...|+.+|+++|+++.+++.|+++++..++.+++ ++.+|+.+.++..      .++||+|++...... ..
T Consensus        37 G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~------~~~~D~i~~~~~~~~-~~  108 (178)
T 3hm2_A           37 GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV------PDNPDVIFIGGGLTA-PG  108 (178)
T ss_dssp             THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC------CSCCSEEEECC-TTC-TT
T ss_pred             CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc------CCCCCEEEECCcccH-HH
Confidence            555666677778999999999999999999999999987789 8899987755421      278999999875544 67


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 031568           82 YHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +++.+.+.|+|||.+++...
T Consensus       109 ~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A          109 VFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             HHHHHHHTCCTTCEEEEEEC
T ss_pred             HHHHHHHhcCCCCEEEEEee
Confidence            89999999999999998654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.33  E-value=1.9e-11  Score=85.84  Aligned_cols=96  Identities=16%  Similarity=0.157  Sum_probs=74.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--Cccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~   79 (157)
                      |..+..++. .+..+|+++|+++.+++.|+++++..++.++++++.+|+.+.++.+..   ..++||+|++++.  ....
T Consensus        56 G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~fD~i~~~~~~~~~~~  131 (187)
T 2fhp_A           56 GGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---EKLQFDLVLLDPPYAKQEI  131 (187)
T ss_dssp             CHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH---TTCCEEEEEECCCGGGCCH
T ss_pred             CHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh---cCCCCCEEEECCCCCchhH
Confidence            444444444 466899999999999999999999998877899999999987664421   1468999999976  2344


Q ss_pred             HHHHHHH--HhcccCCeEEEEecc
Q 031568           80 CNYHERL--MKLLKVGGIAVYDNT  101 (157)
Q Consensus        80 ~~~~~~~--~~~L~~gG~iv~~~~  101 (157)
                      ...++.+  .++|+|||++++...
T Consensus       132 ~~~~~~l~~~~~L~~gG~l~~~~~  155 (187)
T 2fhp_A          132 VSQLEKMLERQLLTNEAVIVCETD  155 (187)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhcccCCCCEEEEEeC
Confidence            5666666  788999999998644

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.32  E-value=1.6e-11  Score=94.04  Aligned_cols=94  Identities=23%  Similarity=0.229  Sum_probs=76.1

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |.-|..++... ++++|+++|+++.+++.+++|+++.|+. +++++++|+.+... .      .++||+|++|++...  
T Consensus       130 G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~-~------~~~fD~Il~d~Pcsg~g  201 (315)
T 1ixk_A          130 GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE-L------NVEFDKILLDAPCTGSG  201 (315)
T ss_dssp             SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG-G------CCCEEEEEEECCTTSTT
T ss_pred             CHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccc-c------cccCCEEEEeCCCCCcc
Confidence            56677777765 4689999999999999999999999986 79999999987532 2      467999999975321  


Q ss_pred             -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                             ...+++.+.++|+|||.+++.++..
T Consensus       202 ~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          202 TIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             TCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence                                   1467888899999999999987643

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.31  E-value=1.5e-11  Score=94.53  Aligned_cols=93  Identities=18%  Similarity=0.309  Sum_probs=72.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH--cCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-   77 (157)
                      |..+..+++..+..+|+++|+++++++.|++++..  .++ .++++++.+|+.+.++..      .++||+|++|+..+ 
T Consensus       128 G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~~fDvIi~d~~~p~  201 (321)
T 2pt6_A          128 GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------TNTYDVIIVDSSDPI  201 (321)
T ss_dssp             CHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------CSCEEEEEEECCCSS
T ss_pred             cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------CCCceEEEECCcCCC
Confidence            33344455444689999999999999999999876  233 368999999999987643      56899999997321 


Q ss_pred             -----cc-HHHHHHHHhcccCCeEEEEec
Q 031568           78 -----NY-CNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 -----~~-~~~~~~~~~~L~~gG~iv~~~  100 (157)
                           .+ .++++.+.+.|+|||++++..
T Consensus       202 ~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          202 GPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             SGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence                 12 688999999999999999964

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.31  E-value=5.2e-11  Score=93.76  Aligned_cols=96  Identities=23%  Similarity=0.259  Sum_probs=76.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |.-+..++.. +..+|+++|+++.+++.|++|++.+++.++++++.+|+.+.++.+..   ..++||+|++|++.     
T Consensus       229 G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~---~~~~fD~Vi~dpP~~~~~~  304 (396)
T 2as0_A          229 GGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK---KGEKFDIVVLDPPAFVQHE  304 (396)
T ss_dssp             THHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH---TTCCEEEEEECCCCSCSSG
T ss_pred             CHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh---hCCCCCEEEECCCCCCCCH
Confidence            3334444443 45699999999999999999999999876899999999998775532   14689999999864     


Q ss_pred             -------cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 -------DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 -------~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                             ..+..++..+.++|+|||++++..+
T Consensus       305 ~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          305 KDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             GGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence                   3456788889999999998887654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.31  E-value=1.5e-11  Score=98.48  Aligned_cols=96  Identities=20%  Similarity=0.174  Sum_probs=76.1

Q ss_pred             cccHHHHHhhCCC-cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc-
Q 031568            2 HLPTKLFMTGNKI-LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY-   79 (157)
Q Consensus         2 g~st~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~-   79 (157)
                      |.-|..++...++ ++|+++|+++.+++.+++|+++.|+. +++++.+|+.+..+.+     .+++||+|++|++.... 
T Consensus       271 G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~-----~~~~fD~Vl~D~Pcsg~g  344 (450)
T 2yxl_A          271 GGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEII-----GEEVADKVLLDAPCTSSG  344 (450)
T ss_dssp             CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSS-----CSSCEEEEEEECCCCCGG
T ss_pred             cHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhh-----ccCCCCEEEEcCCCCCCe
Confidence            5566777776665 89999999999999999999999985 7999999997653212     12679999999754221 


Q ss_pred             ------------------------HHHHHHHHhcccCCeEEEEecccC
Q 031568           80 ------------------------CNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        80 ------------------------~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                              ..+++.+.++|+|||.+++.++..
T Consensus       345 ~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          345 TIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             GTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             eeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                                    467888899999999999877654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.31  E-value=1e-11  Score=89.11  Aligned_cols=95  Identities=13%  Similarity=0.107  Sum_probs=72.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCc-eeEEEEcCC--Cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGS-FDYAFVDAD--KD   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~-fD~I~iD~~--~~   77 (157)
                      |..+..+++. ...+|+++|+++++++.|++|++..++. ++++++.+|+.+.++.+     ..++ ||+|++|+.  ..
T Consensus        65 G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~~fD~I~~~~~~~~~  138 (201)
T 2ift_A           65 GSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-----QNQPHFDVVFLDPPFHFN  138 (201)
T ss_dssp             CHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-----CSSCCEEEEEECCCSSSC
T ss_pred             CHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh-----ccCCCCCEEEECCCCCCc
Confidence            4334433433 3579999999999999999999999984 58999999998875432     1467 999999986  23


Q ss_pred             ccHHHHHHH--HhcccCCeEEEEeccc
Q 031568           78 NYCNYHERL--MKLLKVGGIAVYDNTL  102 (157)
Q Consensus        78 ~~~~~~~~~--~~~L~~gG~iv~~~~~  102 (157)
                      .+...++.+  .++|+|||++++....
T Consensus       139 ~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          139 LAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            456677777  5689999999986543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.30  E-value=5.8e-11  Score=95.77  Aligned_cols=95  Identities=15%  Similarity=0.148  Sum_probs=76.9

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |.-|+.++... +.++|+++|+++.+++.+++|++++|+. +++++++|+.+.....      .++||.|++|++...  
T Consensus       129 G~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~------~~~fD~Il~D~PcSg~G  201 (479)
T 2frx_A          129 GSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAV------PEMFDAILLDAPCSGEG  201 (479)
T ss_dssp             SHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHS------TTCEEEEEEECCCCCGG
T ss_pred             CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhc------cccCCEEEECCCcCCcc
Confidence            55677777765 4689999999999999999999999986 7999999998764322      468999999975421  


Q ss_pred             -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                             ...+++.+.++|+|||++++.++.+
T Consensus       202 ~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          202 VVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             GGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence                                   1356788889999999999987754

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.29  E-value=4e-11  Score=84.36  Aligned_cols=89  Identities=13%  Similarity=0.115  Sum_probs=68.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-C----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-K----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-~----   76 (157)
                      |..|..++..  +.+|+++|+++++++.|+++++..++ ++++++.+++.+.. ..     .+++||+|+++.. .    
T Consensus        34 G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~-~~-----~~~~fD~v~~~~~~~~~~~  104 (185)
T 3mti_A           34 GNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLD-HY-----VREPIRAAIFNLGYLPSAD  104 (185)
T ss_dssp             SHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGG-GT-----CCSCEEEEEEEEC------
T ss_pred             CHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHH-hh-----ccCCcCEEEEeCCCCCCcc
Confidence            5556666655  89999999999999999999999998 58999998876542 22     2568999998831 1    


Q ss_pred             -------cccHHHHHHHHhcccCCeEEEEe
Q 031568           77 -------DNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        77 -------~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                             ......++.+.+.|+|||.+++.
T Consensus       105 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  134 (185)
T 3mti_A          105 KSVITKPHTTLEAIEKILDRLEVGGRLAIM  134 (185)
T ss_dssp             -----CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence                   12345678888999999999884

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.29  E-value=1e-11  Score=92.36  Aligned_cols=91  Identities=15%  Similarity=0.188  Sum_probs=72.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |.-+..++... ..+|+++|+++.+++.|++|++.+++.++++++++|+.+..+.+     ..++||+|+++++.-    
T Consensus        61 G~~~~~la~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~-----~~~~fD~Ii~npPy~~~~~  134 (259)
T 3lpm_A           61 GIIPLLLSTRT-KAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI-----PKERADIVTCNPPYFATPD  134 (259)
T ss_dssp             THHHHHHHTTC-CCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS-----CTTCEEEEEECCCC-----
T ss_pred             hHHHHHHHHhc-CCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh-----ccCCccEEEECCCCCCCcc
Confidence            44455555553 34999999999999999999999999889999999999875433     246899999986421    


Q ss_pred             -------------------ccHHHHHHHHhcccCCeEEEE
Q 031568           78 -------------------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 -------------------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                                         .+..+++.+.++|+|||.+++
T Consensus       135 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          135 TSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             ------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence                               134688889999999999998

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.29  E-value=2.4e-11  Score=90.22  Aligned_cols=92  Identities=20%  Similarity=0.219  Sum_probs=76.7

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      .|..++.++..+|+.+|+++|+++++++.|++|++.+|+. +++++++|+.+......    ..++||+|++.+. ..+.
T Consensus        91 ~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~----~~~~fD~I~s~a~-~~~~  164 (249)
T 3g89_A           91 AGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAG----HREAYARAVARAV-APLC  164 (249)
T ss_dssp             TTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTT----TTTCEEEEEEESS-CCHH
T ss_pred             CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccc----cCCCceEEEECCc-CCHH
Confidence            3677778888889999999999999999999999999986 59999999987642100    1368999999864 3567


Q ss_pred             HHHHHHHhcccCCeEEEE
Q 031568           81 NYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~   98 (157)
                      .+++.+.++|+|||.+++
T Consensus       165 ~ll~~~~~~LkpgG~l~~  182 (249)
T 3g89_A          165 VLSELLLPFLEVGGAAVA  182 (249)
T ss_dssp             HHHHHHGGGEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCeEEEE
Confidence            889999999999999886

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.29  E-value=3.5e-11  Score=94.78  Aligned_cols=96  Identities=19%  Similarity=0.269  Sum_probs=77.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----   76 (157)
                      |.-++.++.. ...+|+++|+++.+++.|++|++.+|+ .++++++.+|+.+.++.+.+   ..++||+|++|++.    
T Consensus       232 G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~---~~~~fD~Ii~dpP~~~~~  307 (396)
T 3c0k_A          232 GGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---RGEKFDVIVMDPPKFVEN  307 (396)
T ss_dssp             CSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH---TTCCEEEEEECCSSTTTC
T ss_pred             CHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh---cCCCCCEEEECCCCCCCC
Confidence            4444445543 357999999999999999999999998 66899999999998876532   13589999999864    


Q ss_pred             --------cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 --------DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 --------~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                              ..+..++..+.++|+|||++++...
T Consensus       308 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          308 KSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             SSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence                    4567788889999999999998654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.28  E-value=3.2e-11  Score=87.34  Aligned_cols=93  Identities=10%  Similarity=0.232  Sum_probs=75.6

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---   77 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---   77 (157)
                      .|..+..++...|+.+++++|+++.+++.|+++++..++. +++++.+|+.+....+     +.++||.|++....+   
T Consensus        49 ~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~-----~~~~~d~v~~~~~~p~~~  122 (213)
T 2fca_A           49 KGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEVKRVYLNFSDPWPK  122 (213)
T ss_dssp             TSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSCCEEEEESCCCCCS
T ss_pred             CCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhc-----CcCCcCEEEEECCCCCcC
Confidence            3666777888889999999999999999999999999884 7999999998843223     256899998854211   


Q ss_pred             --------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 --------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 --------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                              .+..+++.+.+.|+|||.+++.
T Consensus       123 ~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          123 KRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             GGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             ccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence                    1467899999999999999875

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.28  E-value=1.6e-11  Score=92.42  Aligned_cols=91  Identities=15%  Similarity=0.161  Sum_probs=75.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.-+..++...+. +|+++|+++.+++.|++|++.+++.++++++++|+.+...        .++||+|++|+.. ....
T Consensus       137 G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--------~~~fD~Vi~~~p~-~~~~  206 (278)
T 2frn_A          137 GHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIADRILMGYVV-RTHE  206 (278)
T ss_dssp             TTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCEEEEEECCCS-SGGG
T ss_pred             CHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------cCCccEEEECCch-hHHH
Confidence            5556666665434 8999999999999999999999998789999999987643        4689999999764 3466


Q ss_pred             HHHHHHhcccCCeEEEEeccc
Q 031568           82 YHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      +++.+.+.|+|||++++....
T Consensus       207 ~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          207 FIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             GHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHCCCCeEEEEEEee
Confidence            888999999999999986554

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.28  E-value=1.3e-10  Score=89.63  Aligned_cols=95  Identities=12%  Similarity=0.161  Sum_probs=73.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---   77 (157)
                      |.-+..++..  +.+|+++|+++.+++.|++|++.+++.+ +++++++|+.++++.+..   ..++||+|++|++.-   
T Consensus       165 G~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~---~~~~fD~Ii~dPP~~~~~  239 (332)
T 2igt_A          165 GVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER---RGSTYDIILTDPPKFGRG  239 (332)
T ss_dssp             CHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH---HTCCBSEEEECCCSEEEC
T ss_pred             CHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHh---cCCCceEEEECCccccCC
Confidence            4344444443  4599999999999999999999999875 599999999998765321   145899999998631   


Q ss_pred             ----------ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 ----------NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 ----------~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                                .+..+++.+.++|+|||++++.+.
T Consensus       240 ~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~  273 (332)
T 2igt_A          240 THGEVWQLFDHLPLMLDICREILSPKALGLVLTA  273 (332)
T ss_dssp             TTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence                      256788888999999999777543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.28  E-value=2e-11  Score=96.11  Aligned_cols=91  Identities=20%  Similarity=0.174  Sum_probs=74.6

Q ss_pred             cccHHHHHhhCCC-cEEEEEeCChhHHHHHHHHHHHcCCCCc-EEEEEccHHHHHH-HHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTGNKI-LQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD-QLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~l~-~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |.-++.++...++ .+|+++|+++.+++.+++|++.+|++++ ++++.+|+.+++. .+      .++||+|++|+ ...
T Consensus        64 G~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------~~~fD~V~lDP-~g~  136 (392)
T 3axs_A           64 GIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------GFGFDYVDLDP-FGT  136 (392)
T ss_dssp             SHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------SSCEEEEEECC-SSC
T ss_pred             cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------CCCCcEEEECC-CcC
Confidence            4444455555444 7999999999999999999999999877 9999999999886 54      45799999998 333


Q ss_pred             cHHHHHHHHhcccCCeEEEEe
Q 031568           79 YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++++.+.++|++||++++.
T Consensus       137 ~~~~l~~a~~~Lk~gGll~~t  157 (392)
T 3axs_A          137 PVPFIESVALSMKRGGILSLT  157 (392)
T ss_dssp             CHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhCCCCEEEEE
Confidence            467899999999999988774

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.28  E-value=3.1e-11  Score=91.13  Aligned_cols=93  Identities=17%  Similarity=0.295  Sum_probs=72.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-   77 (157)
                      |..+..+++..+..+|+++|+++.+++.|++++...+  + .++++++.+|+.++++..      .++||+|++|...+ 
T Consensus        90 G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~~fD~Ii~d~~~~~  163 (283)
T 2i7c_A           90 GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------TNTYDVIIVDSSDPI  163 (283)
T ss_dssp             SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------CSCEEEEEEECCCTT
T ss_pred             CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------CCCceEEEEcCCCCC
Confidence            4344445545568899999999999999999986542  2 368999999999987643      56899999987321 


Q ss_pred             ----c-c-HHHHHHHHhcccCCeEEEEec
Q 031568           78 ----N-Y-CNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 ----~-~-~~~~~~~~~~L~~gG~iv~~~  100 (157)
                          . + .++++.+.+.|+|||++++..
T Consensus       164 ~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          164 GPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             TGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence                1 1 688999999999999999864

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.28  E-value=1.7e-12  Score=95.58  Aligned_cols=90  Identities=17%  Similarity=0.186  Sum_probs=73.9

Q ss_pred             CcccHHHHHhh----CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcC
Q 031568            1 MHLPTKLFMTG----NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         1 ~g~st~~l~~~----~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      .|.+|..++..    .|+++|++||+++++++.|+      +..++++++++|+.+.  ++.+     ...+||+|++|+
T Consensus        92 tG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~-----~~~~fD~I~~d~  160 (236)
T 2bm8_A           92 NGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHL-----REMAHPLIFIDN  160 (236)
T ss_dssp             TSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGG-----SSSCSSEEEEES
T ss_pred             CCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhh-----ccCCCCEEEECC
Confidence            47888888876    68999999999999999887      2235899999999874  3433     134799999998


Q ss_pred             CCcccHHHHHHHHh-cccCCeEEEEecc
Q 031568           75 DKDNYCNYHERLMK-LLKVGGIAVYDNT  101 (157)
Q Consensus        75 ~~~~~~~~~~~~~~-~L~~gG~iv~~~~  101 (157)
                      ....+..++..+.+ .|+|||++++++.
T Consensus       161 ~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          161 AHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             SCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             chHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            87778888999996 9999999999875

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.27  E-value=3.1e-11  Score=86.64  Aligned_cols=92  Identities=14%  Similarity=0.090  Sum_probs=70.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--Cccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~   79 (157)
                      |..+..+++. ...+|+++|+++.+++.|++|++..++ ++++++++|+.+.++..      .++||+|++|+.  ...+
T Consensus        66 G~~~~~l~~~-~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~------~~~fD~V~~~~p~~~~~~  137 (202)
T 2fpo_A           66 GALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK------GTPHNIVFVDPPFRRGLL  137 (202)
T ss_dssp             CHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC------CCCEEEEEECCSSSTTTH
T ss_pred             CHHHHHHHhc-CCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhc------CCCCCEEEECCCCCCCcH
Confidence            4344434443 346999999999999999999999988 58999999999876531      468999999986  2345


Q ss_pred             HHHHHHHHh--cccCCeEEEEecc
Q 031568           80 CNYHERLMK--LLKVGGIAVYDNT  101 (157)
Q Consensus        80 ~~~~~~~~~--~L~~gG~iv~~~~  101 (157)
                      ...++.+.+  +|+|||++++...
T Consensus       138 ~~~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          138 EETINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             HHHHHHHHhcCccCCCcEEEEEEC
Confidence            567777754  5999999988644

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.27  E-value=4.3e-11  Score=94.03  Aligned_cols=86  Identities=10%  Similarity=0.265  Sum_probs=70.4

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------------cc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------NY   79 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------------~~   79 (157)
                      ...+|+++|+++.+++.|++|++.+++.+ +++++.+|+.++++.+..   ...+||+|++|++..            .+
T Consensus       234 ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~---~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~  310 (385)
T 2b78_A          234 GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR---HHLTYDIIIIDPPSFARNKKEVFSVSKDY  310 (385)
T ss_dssp             TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH---TTCCEEEEEECCCCC-----CCCCHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH---hCCCccEEEECCCCCCCChhhHHHHHHHH
Confidence            34599999999999999999999999876 899999999998876532   135899999998641            13


Q ss_pred             HHHHHHHHhcccCCeEEEEecc
Q 031568           80 CNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .+++..+.++|+|||++++...
T Consensus       311 ~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          311 HKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             HHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHhcCCCcEEEEEeC
Confidence            4566777899999999998654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.27  E-value=3.7e-11  Score=94.24  Aligned_cols=94  Identities=23%  Similarity=0.329  Sum_probs=75.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |.-+..++..  ..+|+++|+++.+++.|++|++.+++. +++++.+|+.++++.+..   ..++||+|++|++.     
T Consensus       221 G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~---~~~~fD~Ii~dpP~~~~~~  294 (382)
T 1wxx_A          221 GGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEK---EGERFDLVVLDPPAFAKGK  294 (382)
T ss_dssp             THHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHH---TTCCEEEEEECCCCSCCST
T ss_pred             CHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHh---cCCCeeEEEECCCCCCCCh
Confidence            4344445544  779999999999999999999999986 499999999998876532   14689999999864     


Q ss_pred             -------cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 -------DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 -------~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                             ..+..++..+.++|+|||++++..+
T Consensus       295 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          295 KDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                   3456788889999999999998654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.26  E-value=2e-11  Score=88.08  Aligned_cols=92  Identities=14%  Similarity=0.284  Sum_probs=75.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++...|+.+++++|+++.+++.|+++++..++ ++++++.+|+.+....+     +.++||+|+++...+    
T Consensus        53 G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-----~~~~~D~i~~~~~~~~~~~  126 (214)
T 1yzh_A           53 GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYF-----EDGEIDRLYLNFSDPWPKK  126 (214)
T ss_dssp             SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTS-----CTTCCSEEEEESCCCCCSG
T ss_pred             CHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhc-----CCCCCCEEEEECCCCcccc
Confidence            56667788888999999999999999999999999988 58999999998732112     246899999986432    


Q ss_pred             -------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 -------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 -------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                             .+..+++.+.+.|+|||++++.
T Consensus       127 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          127 RHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             GGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             chhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence                   2367899999999999999885

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.26  E-value=1.8e-11  Score=91.24  Aligned_cols=98  Identities=9%  Similarity=0.094  Sum_probs=76.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH---cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC--
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK---AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--   76 (157)
                      |.-++.++...|+.+|+++|+++++++.|++|++.   +++.++++++++|+.+..+.........++||+|+++++.  
T Consensus        48 G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~  127 (260)
T 2ozv_A           48 GAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYND  127 (260)
T ss_dssp             SHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC--
T ss_pred             hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcC
Confidence            55566677787889999999999999999999998   8887789999999988754210000024689999998532  


Q ss_pred             -------------------cccHHHHHHHHhcccCCeEEEEe
Q 031568           77 -------------------DNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        77 -------------------~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                                         ..+..+++.+.++|+|||.+++.
T Consensus       128 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  169 (260)
T 2ozv_A          128 AGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI  169 (260)
T ss_dssp             -------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence                               12567788899999999999873

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.26  E-value=1e-11  Score=88.29  Aligned_cols=93  Identities=10%  Similarity=0.098  Sum_probs=74.6

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----   76 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----   76 (157)
                      |..+..++... |.++|+++|+++.+++.|+++++..++.++++++.+|+.+.....      .++||+|+++...    
T Consensus        34 G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~fD~v~~~~~~~~~~  107 (197)
T 3eey_A           34 GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI------DCPVKAVMFNLGYLPSG  107 (197)
T ss_dssp             SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC------CSCEEEEEEEESBCTTS
T ss_pred             CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc------cCCceEEEEcCCcccCc
Confidence            55566666653 678999999999999999999999998779999999997754321      5789999998632    


Q ss_pred             --------cccHHHHHHHHhcccCCeEEEEec
Q 031568           77 --------DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 --------~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                              ..+..+++.+.++|+|||.+++..
T Consensus       108 ~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A          108 DHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             CTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence                    023568999999999999998753

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.25  E-value=1e-10  Score=87.66  Aligned_cols=90  Identities=13%  Similarity=0.178  Sum_probs=73.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |.-+..++...|+.+|+++|+++.+++.|++|++..++. +++++.+|+.+.++        .++||+|+++++.     
T Consensus       121 G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~--------~~~fD~Iv~npPy~~~~~  191 (276)
T 2b3t_A          121 GAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALA--------GQQFAMIVSNPPYIDEQD  191 (276)
T ss_dssp             SHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGT--------TCCEEEEEECCCCBCTTC
T ss_pred             cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcc--------cCCccEEEECCCCCCccc
Confidence            445556676778999999999999999999999999886 79999999987532        4689999998532     


Q ss_pred             -----------------------cccHHHHHHHHhcccCCeEEEEec
Q 031568           77 -----------------------DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 -----------------------~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                                             ..+..+++.+.++|+|||++++..
T Consensus       192 ~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          192 PHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             HHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             cccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                                   124567888889999999999863

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.25  E-value=4.4e-11  Score=100.45  Aligned_cols=94  Identities=20%  Similarity=0.304  Sum_probs=76.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----   76 (157)
                      |.-++.++. ....+|+++|+++.+++.|++|++.+|+. ++++++++|+.++++..      .++||+|++|++.    
T Consensus       551 G~~sl~aa~-~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~------~~~fD~Ii~DPP~f~~~  623 (703)
T 3v97_A          551 GSATVHAGL-GGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA------NEQFDLIFIDPPTFSNS  623 (703)
T ss_dssp             CHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC------CCCEEEEEECCCSBC--
T ss_pred             hHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc------CCCccEEEECCccccCC
Confidence            433433443 34568999999999999999999999997 68999999999988753      5689999999853    


Q ss_pred             ----------cccHHHHHHHHhcccCCeEEEEeccc
Q 031568           77 ----------DNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        77 ----------~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                                ..|.+++..+.++|+|||++++.+..
T Consensus       624 ~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          624 KRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             -----CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence                      13566788889999999999987654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.24  E-value=4e-11  Score=86.53  Aligned_cols=141  Identities=16%  Similarity=0.126  Sum_probs=93.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCC----cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDH----KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      |..+..++...+..+++++|+++.+++.|++++...++.+    +++++.+|+... +.      ..++||+|++.....
T Consensus        41 G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~------~~~~fD~V~~~~~l~  113 (219)
T 3jwg_A           41 GNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR-DK------RFSGYDAATVIEVIE  113 (219)
T ss_dssp             CHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC-CG------GGTTCSEEEEESCGG
T ss_pred             CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc-cc------ccCCCCEEEEHHHHH
Confidence            5555666666677899999999999999999998877754    899999998432 21      146899999865322


Q ss_pred             -----ccHHHHHHHHhcccCCeEEEEecccCCcccc--CCCCC--CCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCC
Q 031568           78 -----NYCNYHERLMKLLKVGGIAVYDNTLWGGTVA--VPEEQ--VPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD  148 (157)
Q Consensus        78 -----~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~  148 (157)
                           ....+++.+.+.|+|||+++.......+...  .+...  .+.+...-....++++.+.+....+|.....++|+
T Consensus       114 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~  193 (219)
T 3jwg_A          114 HLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGE  193 (219)
T ss_dssp             GCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESC
T ss_pred             hCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCC
Confidence                 2357889999999999988764322111111  01000  00000000345677777777777789888887765


Q ss_pred             e
Q 031568          149 G  149 (157)
Q Consensus       149 G  149 (157)
                      +
T Consensus       194 ~  194 (219)
T 3jwg_A          194 I  194 (219)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.24  E-value=2.9e-11  Score=87.25  Aligned_cols=141  Identities=14%  Similarity=0.172  Sum_probs=94.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCC----cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDH----KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      |..+..++...+..+++++|+++.+++.|++++...++.+    +++++.+|+... +.      ..++||+|++.....
T Consensus        41 G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~------~~~~fD~v~~~~~l~  113 (217)
T 3jwh_A           41 GNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-DK------RFHGYDAATVIEVIE  113 (217)
T ss_dssp             CHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-CG------GGCSCSEEEEESCGG
T ss_pred             CHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-cc------cCCCcCEEeeHHHHH
Confidence            5555666666677899999999999999999998888764    799999998432 11      136899999865322


Q ss_pred             -----ccHHHHHHHHhcccCCeEEEEecccCCcccc--CCCCC--CCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCC
Q 031568           78 -----NYCNYHERLMKLLKVGGIAVYDNTLWGGTVA--VPEEQ--VPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD  148 (157)
Q Consensus        78 -----~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~  148 (157)
                           ....+++.+.+.|+|||++++......+...  .+...  .+.+...-..+.++++.+.+....+|.....++|+
T Consensus       114 ~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~~g~  193 (217)
T 3jwh_A          114 HLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPIGE  193 (217)
T ss_dssp             GCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEEECCCSC
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence                 3467889999999999988874321111100  00000  00010000345678888788888899999888775


Q ss_pred             e
Q 031568          149 G  149 (157)
Q Consensus       149 G  149 (157)
                      .
T Consensus       194 ~  194 (217)
T 3jwh_A          194 A  194 (217)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.23  E-value=2.1e-10  Score=84.39  Aligned_cols=93  Identities=14%  Similarity=0.112  Sum_probs=72.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH------cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~------~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |..+..++...|+..+++||+++.+++.|+++++.      .+. .+++++.+|+.+.++...    +.++||.|++...
T Consensus        58 G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~----~~~~~D~v~~~~~  132 (235)
T 3ckk_A           58 GGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFF----YKGQLTKMFFLFP  132 (235)
T ss_dssp             CHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHC----CTTCEEEEEEESC
T ss_pred             cHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhC----CCcCeeEEEEeCC
Confidence            66677778788999999999999999999998865      344 479999999987555432    2578999998643


Q ss_pred             Ccc-----------cHHHHHHHHhcccCCeEEEEe
Q 031568           76 KDN-----------YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        76 ~~~-----------~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      .+.           ...+++.+.+.|+|||.+++.
T Consensus       133 dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          133 DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             C-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence            211           257899999999999999874

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.23  E-value=1.7e-11  Score=90.49  Aligned_cols=89  Identities=18%  Similarity=0.177  Sum_probs=75.3

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..+..++.. .|+++|+++|+++++++.|+++++..|+.++++++.+|+.+.++        .++||+|++|..  ...
T Consensus       105 G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~D~v~~~~~--~~~  174 (255)
T 3mb5_A          105 GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE--------EENVDHVILDLP--QPE  174 (255)
T ss_dssp             SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC--------CCSEEEEEECSS--CGG
T ss_pred             hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC--------CCCcCEEEECCC--CHH
Confidence            5566667776 68999999999999999999999999998779999999986532        567999999865  345


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 031568           81 NYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~  100 (157)
                      .+++.+.+.|+|||.+++..
T Consensus       175 ~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          175 RVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             GGHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCCEEEEEE
Confidence            67899999999999999853

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.23  E-value=3.2e-11  Score=90.13  Aligned_cols=91  Identities=14%  Similarity=0.093  Sum_probs=72.8

Q ss_pred             cccHHHHHhhC--CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--
Q 031568            2 HLPTKLFMTGN--KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--   77 (157)
Q Consensus         2 g~st~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--   77 (157)
                      |..|..++...  ++.+|++||+++.|++.|+++++..+...+++++++|+.+.         +.++||+|++.....  
T Consensus        82 G~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~---------~~~~~d~v~~~~~l~~~  152 (261)
T 4gek_A           82 GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI---------AIENASMVVLNFTLQFL  152 (261)
T ss_dssp             THHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC---------CCCSEEEEEEESCGGGS
T ss_pred             CHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc---------cccccccceeeeeeeec
Confidence            55566677643  68899999999999999999999988888999999999763         246799999865321  


Q ss_pred             ---ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 ---NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 ---~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                         ....+++.+.+.|+|||++++.+.
T Consensus       153 ~~~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          153 EPSERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CchhHhHHHHHHHHHcCCCcEEEEEec
Confidence               234678999999999999987543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.23  E-value=7.8e-11  Score=92.41  Aligned_cols=90  Identities=13%  Similarity=0.139  Sum_probs=75.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc---------------CCCCcEEEEEccHHHHHHHHhhcCCCCCc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA---------------GVDHKINFIESEALSVLDQLLKYSENEGS   66 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~---------------~~~~~i~~~~~d~~~~l~~~~~~~~~~~~   66 (157)
                      |.-++.++...++.+|+++|+++++++.+++|++.+               |+. +++++++|+.+.+...      .++
T Consensus        59 G~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~~~~------~~~  131 (378)
T 2dul_A           59 GIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLMAER------HRY  131 (378)
T ss_dssp             SHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHHHHS------TTC
T ss_pred             hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHHHhc------cCC
Confidence            556666777667789999999999999999999999               875 4999999999987653      357


Q ss_pred             eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 031568           67 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        67 fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ||+|++|+.. ...++++.+.+.|++||++++.
T Consensus       132 fD~I~lDP~~-~~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          132 FHFIDLDPFG-SPMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             EEEEEECCSS-CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEeCCCC-CHHHHHHHHHHhcCCCCEEEEE
Confidence            9999999843 3478899999999999988774

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.22  E-value=3.5e-11  Score=90.34  Aligned_cols=90  Identities=18%  Similarity=0.159  Sum_probs=76.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.-+..++...++++|+++|+++.+++.|++|++.+++. +++++.+|+.+. +.       .++||+|++|++. .+.+
T Consensus       131 G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~-~~-------~~~~D~Vi~d~p~-~~~~  200 (272)
T 3a27_A          131 GYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDV-EL-------KDVADRVIMGYVH-KTHK  200 (272)
T ss_dssp             TTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGC-CC-------TTCEEEEEECCCS-SGGG
T ss_pred             CHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHc-Cc-------cCCceEEEECCcc-cHHH
Confidence            556666777767889999999999999999999999986 688999999886 42       3579999999875 5677


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 031568           82 YHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ++..+.+.|+|||++++...
T Consensus       201 ~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          201 FLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             GHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCCEEEEEEc
Confidence            88999999999999987543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.22  E-value=9.8e-11  Score=80.95  Aligned_cols=93  Identities=12%  Similarity=0.153  Sum_probs=71.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-cccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-~~~~   80 (157)
                      |..+..++..  +.+|+++|+++.+++.|+++++..++  +++++++|+.+.++....   ..++||+|++++.. ....
T Consensus        53 G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~---~~~~~D~i~~~~~~~~~~~  125 (171)
T 1ws6_A           53 GAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKA---QGERFTVAFMAPPYAMDLA  125 (171)
T ss_dssp             CHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHH---TTCCEEEEEECCCTTSCTT
T ss_pred             CHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhc---cCCceEEEEECCCCchhHH
Confidence            4445555554  33499999999999999999999887  799999999987765431   13479999999643 4456


Q ss_pred             HHHHHHH--hcccCCeEEEEecc
Q 031568           81 NYHERLM--KLLKVGGIAVYDNT  101 (157)
Q Consensus        81 ~~~~~~~--~~L~~gG~iv~~~~  101 (157)
                      +.++.+.  ++|+|||++++...
T Consensus       126 ~~~~~~~~~~~L~~gG~~~~~~~  148 (171)
T 1ws6_A          126 ALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             HHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             HHHHHHHhhcccCCCcEEEEEeC
Confidence            6777777  99999999998644

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.22  E-value=1.9e-11  Score=92.12  Aligned_cols=88  Identities=13%  Similarity=0.117  Sum_probs=71.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.-++.+|. .+..+|+++|+||.+++.+++|++.+++.++++++++|+.++.+        .+.||.|+++.+.. ..+
T Consensus       137 G~~~i~~a~-~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--------~~~~D~Vi~~~p~~-~~~  206 (278)
T 3k6r_A          137 GHLSLPIAV-YGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIADRILMGYVVR-THE  206 (278)
T ss_dssp             TTTTHHHHH-HTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCEEEEEECCCSS-GGG
T ss_pred             cHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc--------ccCCCEEEECCCCc-HHH
Confidence            333333443 35679999999999999999999999999999999999987642        56899999997643 356


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      +++.+.++|++||+|.+.
T Consensus       207 ~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          207 FIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             GHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCCEEEEE
Confidence            788899999999999764

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.22  E-value=1.8e-10  Score=80.78  Aligned_cols=91  Identities=19%  Similarity=0.168  Sum_probs=75.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..++...  .+++++|+++.+++.++++++..+..++++++.+|+.+.++.       .++||+|+++........
T Consensus        45 G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~D~v~~~~~~~~~~~  115 (192)
T 1l3i_A           45 GGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-------IPDIDIAVVGGSGGELQE  115 (192)
T ss_dssp             SHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-------SCCEEEEEESCCTTCHHH
T ss_pred             CHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-------CCCCCEEEECCchHHHHH
Confidence            44444455443  899999999999999999999999867899999999885432       258999999987667788


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 031568           82 YHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +++.+.++|+|||.+++...
T Consensus       116 ~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A          116 ILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             HHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHhcCCCcEEEEEec
Confidence            99999999999999998643

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.21  E-value=1.3e-10  Score=91.54  Aligned_cols=90  Identities=18%  Similarity=0.157  Sum_probs=70.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |.-++.++..  +++|+++|+++.+++.|++|++.+|+..  ++.++|+.++++.+      .+.||+|++|++.     
T Consensus       226 G~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~------~~~fD~Ii~dpP~f~~~~  295 (393)
T 4dmg_A          226 GGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGL------EGPFHHVLLDPPTLVKRP  295 (393)
T ss_dssp             THHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTC------CCCEEEEEECCCCCCSSG
T ss_pred             hHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHh------cCCCCEEEECCCcCCCCH
Confidence            4444444443  5569999999999999999999999864  45699999988754      3349999999864     


Q ss_pred             -------cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 -------DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 -------~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                             ..+..+++.+.++|+|||++++..+
T Consensus       296 ~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          296 EELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                   2456788889999999999996544

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.19  E-value=6.8e-11  Score=86.54  Aligned_cols=93  Identities=11%  Similarity=0.089  Sum_probs=75.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-CCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-DKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~~~~~~   80 (157)
                      |+-++.++...|..+|+++|+++.+++.|++|++.+|+.++|+++.+|+.+.++.       .++||.|++.+ ...-..
T Consensus        27 G~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-------~~~~D~IviaG~Gg~~i~   99 (225)
T 3kr9_A           27 AYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-------TDQVSVITIAGMGGRLIA   99 (225)
T ss_dssp             THHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GGCCCEEEEEEECHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-------CcCCCEEEEcCCChHHHH
Confidence            5556666767788999999999999999999999999988999999999876531       22699999754 222356


Q ss_pred             HHHHHHHhcccCCeEEEEecc
Q 031568           81 NYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ++++.+...|+++|.+|+...
T Consensus       100 ~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A          100 RILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             HHHHHTGGGCTTCCEEEEEES
T ss_pred             HHHHHHHHHhCCCCEEEEECC
Confidence            788888899999999998643

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.19  E-value=1.6e-10  Score=83.89  Aligned_cols=89  Identities=18%  Similarity=0.191  Sum_probs=69.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++... +.+|+++|+++.+++.|++|++.+++  +++++.+|+.... .+     ..++||+|+++++..    
T Consensus        68 G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~-~~-----~~~~fD~I~~npp~~~~~~  138 (230)
T 3evz_A           68 AMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIK-GV-----VEGTFDVIFSAPPYYDKPL  138 (230)
T ss_dssp             CHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSST-TT-----CCSCEEEEEECCCCC----
T ss_pred             HHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhh-hc-----ccCceeEEEECCCCcCCcc
Confidence            44555555554 78999999999999999999999987  7999999974321 12     247899999986421    


Q ss_pred             ------------------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 ------------------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 ------------------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                                        .+..+++.+.++|+|||.+++-
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          139 GRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             -----------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence                              1367889999999999999884

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.17  E-value=6.9e-10  Score=86.39  Aligned_cols=94  Identities=13%  Similarity=0.083  Sum_probs=74.7

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-----CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-----HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      =|+.++...+++.|+++|+++..++..++|+++.+..     .++++...|+..+-+..      .+.||.|++|++++.
T Consensus       162 KT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~------~~~fD~VLlDaPCSg  235 (359)
T 4fzv_A          162 KTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE------GDTYDRVLVDVPCTT  235 (359)
T ss_dssp             HHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS------TTCEEEEEEECCCCC
T ss_pred             HHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc------cccCCEEEECCccCC
Confidence            3556666667789999999999999999999998753     47999999998764432      568999999986432


Q ss_pred             ---------------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 ---------------------------YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 ---------------------------~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                                 -.++++.+.++|+|||+||+.++..
T Consensus       236 ~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          236 DRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             HHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             CCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence                                       0246777889999999999988864

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.17  E-value=1.1e-10  Score=83.39  Aligned_cols=88  Identities=14%  Similarity=0.015  Sum_probs=75.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..++...|+.+++++|+++.+++.|+++++..++. +++++.+|+.+..+        .++||+|++... ..+..
T Consensus        77 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~--------~~~~D~i~~~~~-~~~~~  146 (207)
T 1jsx_A           77 GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS--------EPPFDGVISRAF-ASLND  146 (207)
T ss_dssp             TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC--------CSCEEEEECSCS-SSHHH
T ss_pred             CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCc--------cCCcCEEEEecc-CCHHH
Confidence            666777777778999999999999999999999999886 49999999987431        468999998753 45788


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      +++.+.++|+|||.+++.
T Consensus       147 ~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          147 MVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             HHHHHTTSEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCcEEEEE
Confidence            999999999999999985

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.16  E-value=1.2e-10  Score=85.45  Aligned_cols=93  Identities=13%  Similarity=0.094  Sum_probs=75.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-CCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-DKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~~~~~~   80 (157)
                      |+-++.++...|..+|+++|+++.+++.|++|++.+|+.++|+++.+|+.+.+..       .++||.|++.+ ...-..
T Consensus        33 G~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~-------~~~~D~IviaGmGg~lI~  105 (230)
T 3lec_A           33 AYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE-------ADNIDTITICGMGGRLIA  105 (230)
T ss_dssp             THHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GGCCCEEEEEEECHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc-------ccccCEEEEeCCchHHHH
Confidence            5555666666678899999999999999999999999998999999999886531       23699998754 223456


Q ss_pred             HHHHHHHhcccCCeEEEEecc
Q 031568           81 NYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ++++...+.|+++|.+|....
T Consensus       106 ~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A          106 DILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             HHHHHTGGGGTTCCEEEEEES
T ss_pred             HHHHHHHHHhCcCCEEEEECC
Confidence            778888889999999998643

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.15  E-value=5.2e-10  Score=78.51  Aligned_cols=90  Identities=16%  Similarity=0.146  Sum_probs=71.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---   77 (157)
                      |..+..++..  +.+++++|+++.+++.|++++...++.+ +++++.+|+.+.++        .++||+|++++...   
T Consensus        64 G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~D~v~~~~~~~~~~  133 (194)
T 1dus_A           64 GVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--------DRKYNKIITNPPIRAGK  133 (194)
T ss_dssp             SHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--------TSCEEEEEECCCSTTCH
T ss_pred             CHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--------cCCceEEEECCCcccch
Confidence            3344444444  7899999999999999999999988864 59999999987432        46899999987532   


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                       ....+++.+.++|+|||.+++...
T Consensus       134 ~~~~~~l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A          134 EVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hHHHHHHHHHHHHcCCCCEEEEEEC
Confidence             345788889999999999998654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.14  E-value=9.4e-11  Score=91.66  Aligned_cols=92  Identities=14%  Similarity=0.152  Sum_probs=72.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~   79 (157)
                      |..+..++...+..+|+++|+++.+++.|++|++++|+. +++++.+|+.+.++..     ..++||+|++|++..  ..
T Consensus       183 G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~-----~~~~fD~Vi~~~p~~~~~~  256 (373)
T 2qm3_A          183 DLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY-----ALHKFDTFITDPPETLEAI  256 (373)
T ss_dssp             TCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT-----TSSCBSEEEECCCSSHHHH
T ss_pred             CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh-----ccCCccEEEECCCCchHHH
Confidence            555666666667789999999999999999999999987 8999999998744321     135899999997532  24


Q ss_pred             HHHHHHHHhcccCCe-EEEEe
Q 031568           80 CNYHERLMKLLKVGG-IAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG-~iv~~   99 (157)
                      ..+++.+.+.|+||| ++++.
T Consensus       257 ~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          257 RAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             HHHHHHHHHTBCSTTCEEEEE
T ss_pred             HHHHHHHHHHcccCCeEEEEE
Confidence            577888999999999 44554

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.14  E-value=1.4e-10  Score=85.40  Aligned_cols=94  Identities=20%  Similarity=0.181  Sum_probs=76.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~   79 (157)
                      |..+..++...+ .+|+++|+++.+++.|++++...++.++++++.+|+.+. + +     +.++||+|++.....  ..
T Consensus        58 G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~  129 (257)
T 3f4k_A           58 GGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-P-F-----QNEELDLIWSEGAIYNIGF  129 (257)
T ss_dssp             SHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-S-S-----CTTCEEEEEEESCSCCCCH
T ss_pred             CHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-C-C-----CCCCEEEEEecChHhhcCH
Confidence            556666777665 499999999999999999999999988899999999653 2 1     257899999875322  46


Q ss_pred             HHHHHHHHhcccCCeEEEEecccC
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ..+++.+.++|+|||++++.+..|
T Consensus       130 ~~~l~~~~~~L~pgG~l~~~~~~~  153 (257)
T 3f4k_A          130 ERGMNEWSKYLKKGGFIAVSEASW  153 (257)
T ss_dssp             HHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEEEeec
Confidence            788999999999999999976544

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.13  E-value=1.3e-10  Score=88.09  Aligned_cols=86  Identities=16%  Similarity=0.291  Sum_probs=69.1

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHc--C-C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKA--G-V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------   77 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~-~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------   77 (157)
                      +++..+..+|+.||+||..++.+++++...  + + ++|++++.+|+.+++...      .++||+|++|...+      
T Consensus       101 vlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~------~~~yDvIi~D~~dp~~~~~~  174 (294)
T 3o4f_A          101 VTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT------SQTFDVIISDCTDPIGPGES  174 (294)
T ss_dssp             HHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS------SCCEEEEEESCCCCCCTTCC
T ss_pred             HHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc------cccCCEEEEeCCCcCCCchh
Confidence            333445789999999999999999998642  2 1 478999999999998642      57899999997422      


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                       ...++++.+.+.|+|||++++.
T Consensus       175 L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          175 LFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             SSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             hcCHHHHHHHHHHhCCCCEEEEe
Confidence             2357899999999999999985

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.13  E-value=1e-10  Score=91.66  Aligned_cols=91  Identities=11%  Similarity=0.071  Sum_probs=74.3

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCC--cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDH--KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-   77 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~--~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-   77 (157)
                      .|.-+..++...|+.+|+++|+++.+++.|++|++.+++.+  +++++.+|+.+.++        .++||+|+++++.. 
T Consensus       233 ~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--------~~~fD~Ii~nppfh~  304 (375)
T 4dcm_A          233 NGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRFNAVLCNPPFHQ  304 (375)
T ss_dssp             TCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--------TTCEEEEEECCCC--
T ss_pred             chHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--------CCCeeEEEECCCccc
Confidence            36667777888899999999999999999999999998754  58889999987432        56899999987522 


Q ss_pred             -------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 -------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 -------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                             ....+++.+.+.|+|||.+++-
T Consensus       305 ~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          305 QHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             -----CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence                   1236789999999999999883

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.13  E-value=3.4e-10  Score=85.64  Aligned_cols=91  Identities=5%  Similarity=0.087  Sum_probs=74.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..++...+ .+|+++|+++++++.|++++...++.++++++.+|+.+.          .++||+|++....     
T Consensus        84 G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~~fD~v~~~~~~~~~~d  152 (302)
T 3hem_A           84 GSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----------DEPVDRIVSLGAFEHFAD  152 (302)
T ss_dssp             SHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----------CCCCSEEEEESCGGGTTC
T ss_pred             cHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----------CCCccEEEEcchHHhcCc
Confidence            444555665544 899999999999999999999999988999999999764          3689999986422     


Q ss_pred             -------cccHHHHHHHHhcccCCeEEEEecccC
Q 031568           77 -------DNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        77 -------~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                             ..+..+++.+.++|+|||.+++..+..
T Consensus       153 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  186 (302)
T 3hem_A          153 GAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  186 (302)
T ss_dssp             CSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred             cccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence                   334788999999999999999876543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.13  E-value=9.7e-11  Score=87.76  Aligned_cols=89  Identities=17%  Similarity=0.166  Sum_probs=74.2

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..+..++.. .|+++|+++|+++.+++.|++|++..++.++++++.+|+.+.++        .++||+|++|..  ...
T Consensus       124 G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~D~V~~~~~--~~~  193 (277)
T 1o54_A          124 GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--------EKDVDALFLDVP--DPW  193 (277)
T ss_dssp             SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--------CCSEEEEEECCS--CGG
T ss_pred             CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--------CCccCEEEECCc--CHH
Confidence            4555666666 57899999999999999999999999887789999999987632        467999999864  345


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 031568           81 NYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~  100 (157)
                      .+++.+.+.|+|||.+++..
T Consensus       194 ~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          194 NYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             GTHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCCEEEEEe
Confidence            67889999999999999854

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.13  E-value=2.6e-10  Score=86.85  Aligned_cols=93  Identities=13%  Similarity=0.222  Sum_probs=70.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH---cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK---AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |..+..++...+..+|+++|+++.+++.|++++..   ....++++++.+|+.+++...     ..++||+|++|.....
T Consensus       107 G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-----~~~~fDvIi~d~~~~~  181 (304)
T 3bwc_A          107 GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-----PDNTYDVVIIDTTDPA  181 (304)
T ss_dssp             SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-----CTTCEEEEEEECC---
T ss_pred             CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-----cCCceeEEEECCCCcc
Confidence            44444455555678999999999999999998843   222468999999999886531     1568999999874322


Q ss_pred             -------cHHHHHHHHhcccCCeEEEEe
Q 031568           79 -------YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 -------~~~~~~~~~~~L~~gG~iv~~   99 (157)
                             ..++++.+.+.|+|||++++.
T Consensus       182 ~~~~~l~~~~~l~~~~~~LkpgG~lv~~  209 (304)
T 3bwc_A          182 GPASKLFGEAFYKDVLRILKPDGICCNQ  209 (304)
T ss_dssp             ------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence                   157899999999999999986

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.13  E-value=2.5e-09  Score=74.38  Aligned_cols=86  Identities=22%  Similarity=0.138  Sum_probs=70.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..++.  ++.+++++|+++.+++.|+++++..++ ++++++.+|+.+.++        .++||+|+++.. .....
T Consensus        47 G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~D~i~~~~~-~~~~~  114 (183)
T 2yxd_A           47 GGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLD--------KLEFNKAFIGGT-KNIEK  114 (183)
T ss_dssp             SHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGG--------GCCCSEEEECSC-SCHHH
T ss_pred             CHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCcccccc--------CCCCcEEEECCc-ccHHH
Confidence            434444444  789999999999999999999999988 479999999988432        468999999887 66778


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 031568           82 YHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +++.+.++  |||.+++...
T Consensus       115 ~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A          115 IIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             HHHHHHHT--TCCEEEEEES
T ss_pred             HHHHHhhC--CCCEEEEEec
Confidence            88888877  9999998653

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.12  E-value=1.7e-10  Score=84.98  Aligned_cols=93  Identities=19%  Similarity=0.247  Sum_probs=75.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++... +.+|+++|+++.+++.|+++++..|+.++++++.+|+.+...        .++||+|++...   .+.
T Consensus        48 G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~fD~V~~~~~~~~~~~  118 (256)
T 1nkv_A           48 GEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA--------NEKCDVAACVGATWIAGG  118 (256)
T ss_dssp             CHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC--------SSCEEEEEEESCGGGTSS
T ss_pred             CHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc--------CCCCCEEEECCChHhcCC
Confidence            55566666665 779999999999999999999999988799999999976421        468999998542   224


Q ss_pred             cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ....++.+.+.|+|||.+++.+..+
T Consensus       119 ~~~~l~~~~r~LkpgG~l~~~~~~~  143 (256)
T 1nkv_A          119 FAGAEELLAQSLKPGGIMLIGEPYW  143 (256)
T ss_dssp             SHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCeEEEEecCcc
Confidence            6788999999999999999865443

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.12  E-value=3.6e-10  Score=85.33  Aligned_cols=88  Identities=14%  Similarity=0.130  Sum_probs=71.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCce---eEEEEcCCCcc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF---DYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~f---D~I~iD~~~~~   78 (157)
                      |.-+..++.. |+.+|+++|+++++++.|++|++..++.++++++++|+.+.++         ++|   |+|+++++.-.
T Consensus       135 G~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~---------~~f~~~D~IvsnPPyi~  204 (284)
T 1nv8_A          135 GAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK---------EKFASIEMILSNPPYVK  204 (284)
T ss_dssp             SHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG---------GGTTTCCEEEECCCCBC
T ss_pred             hHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc---------cccCCCCEEEEcCCCCC
Confidence            4445556667 8999999999999999999999999998789999999987532         368   99999864211


Q ss_pred             ----------------------cHHHHHHHH-hcccCCeEEEEe
Q 031568           79 ----------------------YCNYHERLM-KLLKVGGIAVYD   99 (157)
Q Consensus        79 ----------------------~~~~~~~~~-~~L~~gG~iv~~   99 (157)
                                            ...+++.+. +.|+|||+++++
T Consensus       205 ~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          205 SSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             GGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             cccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence                                  126788899 999999999985

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.12  E-value=4.4e-11  Score=90.84  Aligned_cols=93  Identities=15%  Similarity=0.148  Sum_probs=73.7

Q ss_pred             cccHHHHH-hhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568            2 HLPTKLFM-TGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----   76 (157)
Q Consensus         2 g~st~~l~-~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----   76 (157)
                      |..+..++ +..|+.+|+++|+++.+++.|++++...++.++++++.+|+.+. + +      .++||+|++....    
T Consensus       130 G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~------~~~fD~v~~~~~~~~~~  201 (305)
T 3ocj_A          130 MSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-D-T------REGYDLLTSNGLNIYEP  201 (305)
T ss_dssp             CHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-C-C------CSCEEEEECCSSGGGCC
T ss_pred             CHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-C-c------cCCeEEEEECChhhhcC
Confidence            44444454 35689999999999999999999999999888899999999874 1 1      3789999986522    


Q ss_pred             --cccHHHHHHHHhcccCCeEEEEeccc
Q 031568           77 --DNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        77 --~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                        .....+++.+.+.|+|||.+++.+..
T Consensus       202 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          202 DDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence              12234789999999999999997654

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.12  E-value=1.5e-10  Score=86.10  Aligned_cols=94  Identities=15%  Similarity=0.165  Sum_probs=76.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~   79 (157)
                      |..+..++.. ++++|+++|+++.+++.|+++++..++.++++++.+|+.+. + +     +.++||+|++.....  ..
T Consensus        58 G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD~i~~~~~~~~~~~  129 (267)
T 3kkz_A           58 GGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-P-F-----RNEELDLIWSEGAIYNIGF  129 (267)
T ss_dssp             CHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-C-----CTTCEEEEEESSCGGGTCH
T ss_pred             CHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-C-C-----CCCCEEEEEEcCCceecCH
Confidence            4455555555 78899999999999999999999999988899999999763 2 1     257899999875321  45


Q ss_pred             HHHHHHHHhcccCCeEEEEecccC
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ..+++.+.++|+|||++++.+..+
T Consensus       130 ~~~l~~~~~~LkpgG~l~~~~~~~  153 (267)
T 3kkz_A          130 ERGLNEWRKYLKKGGYLAVSECSW  153 (267)
T ss_dssp             HHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEEeee
Confidence            778999999999999999976654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.11  E-value=2.6e-10  Score=84.10  Aligned_cols=93  Identities=14%  Similarity=0.108  Sum_probs=74.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--------CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--------GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD   73 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--------~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD   73 (157)
                      |..+..++...|+.+|++||+++.+++.|+++++..        ++. +++++.+|+.+.++...    ..+++|.|++.
T Consensus        61 G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~----~~~~~d~v~~~  135 (246)
T 2vdv_E           61 GGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFF----EKGQLSKMFFC  135 (246)
T ss_dssp             SHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTS----CTTCEEEEEEE
T ss_pred             CHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhc----cccccCEEEEE
Confidence            556677777878899999999999999999999876        664 79999999987655321    25689999876


Q ss_pred             CCCcc-----------cHHHHHHHHhcccCCeEEEEe
Q 031568           74 ADKDN-----------YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        74 ~~~~~-----------~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      .+.+.           +..+++.+.++|+|||++++.
T Consensus       136 ~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          136 FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            43221           257899999999999999873

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.11  E-value=2.2e-09  Score=82.08  Aligned_cols=96  Identities=15%  Similarity=0.082  Sum_probs=71.1

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |--|+.++.. .+.++|+++|+++.+++.+++|++++|+. +++++.+|+.+..+...    ..++||.|++|++...  
T Consensus       114 G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~----~~~~fD~Vl~D~PcSg~G  188 (309)
T 2b9e_A          114 GNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDP----RYHEVHYILLDPSCSGSG  188 (309)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCG----GGTTEEEEEECCCCCC--
T ss_pred             hHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCcccc----ccCCCCEEEEcCCcCCCC
Confidence            5556667764 46799999999999999999999999985 79999999987532110    0147999999975311  


Q ss_pred             -------------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 -------------------------YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 -------------------------~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                               ..++++.+.++++ ||.+++..+..
T Consensus       189 ~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          189 MPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             CCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence                                     0134666667776 99999987754

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.11  E-value=2.5e-10  Score=84.37  Aligned_cols=92  Identities=10%  Similarity=0.088  Sum_probs=74.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-CCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-DKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~~~~~~   80 (157)
                      |+-++.++...|..+|+++|+++.+++.|++|++.+|+.++|+++.+|+.+.+..       .++||.|++.+ ...-..
T Consensus        33 G~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~-------~~~~D~IviagmGg~lI~  105 (244)
T 3gnl_A           33 AYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK-------KDAIDTIVIAGMGGTLIR  105 (244)
T ss_dssp             THHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GGCCCEEEEEEECHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc-------cccccEEEEeCCchHHHH
Confidence            4455566666678899999999999999999999999988999999999886531       23599998743 333466


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 031568           81 NYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ++++...+.|++++.+|+..
T Consensus       106 ~IL~~~~~~L~~~~~lIlq~  125 (244)
T 3gnl_A          106 TILEEGAAKLAGVTKLILQP  125 (244)
T ss_dssp             HHHHHTGGGGTTCCEEEEEE
T ss_pred             HHHHHHHHHhCCCCEEEEEc
Confidence            78888889999999999864

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.10  E-value=2.3e-10  Score=81.94  Aligned_cols=93  Identities=15%  Similarity=0.286  Sum_probs=75.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~   78 (157)
                      |..+..++.. ++.+++++|+++.+++.|+++++..++.++++++.+|+.+. + +     +.++||+|++....   ..
T Consensus        55 G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~v~~~~~l~~~~~  126 (219)
T 3dlc_A           55 GALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI-P-I-----EDNYADLIVSRGSVFFWED  126 (219)
T ss_dssp             SHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC-S-S-----CTTCEEEEEEESCGGGCSC
T ss_pred             CHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC-C-C-----CcccccEEEECchHhhccC
Confidence            4455556666 78899999999999999999999999888999999999763 2 1     25789999997632   34


Q ss_pred             cHHHHHHHHhcccCCeEEEEeccc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ...+++.+.+.|+|||.+++.+..
T Consensus       127 ~~~~l~~~~~~L~pgG~l~~~~~~  150 (219)
T 3dlc_A          127 VATAFREIYRILKSGGKTYIGGGF  150 (219)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEecc
Confidence            578899999999999999986543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.10  E-value=5.9e-10  Score=79.62  Aligned_cols=89  Identities=13%  Similarity=0.155  Sum_probs=72.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..++ ..+..+|+++|+++.+++.|++++...+..+ ++++.+|+.+..         .++||+|+++.....+..
T Consensus        72 G~~~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~---------~~~fD~i~~~~~~~~~~~  140 (205)
T 3grz_A           72 GILAIAAH-KLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV---------DGKFDLIVANILAEILLD  140 (205)
T ss_dssp             SHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC---------CSCEEEEEEESCHHHHHH
T ss_pred             CHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC---------CCCceEEEECCcHHHHHH
Confidence            44444544 4467799999999999999999999998864 999999997632         578999999986655667


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 031568           82 YHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +++.+.++|+|||.+++...
T Consensus       141 ~l~~~~~~L~~gG~l~~~~~  160 (205)
T 3grz_A          141 LIPQLDSHLNEDGQVIFSGI  160 (205)
T ss_dssp             HGGGSGGGEEEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCCEEEEEec
Confidence            78888899999999998644

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.09  E-value=2.1e-10  Score=82.16  Aligned_cols=85  Identities=15%  Similarity=0.171  Sum_probs=69.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..|..++..  +.+|+++|+++++++.|+++++..++. +++++.+|+.+..+.       .++||+|+++....... 
T Consensus        89 G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~~~D~i~~~~~~~~~~-  157 (210)
T 3lbf_A           89 GYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQA-------RAPFDAIIVTAAPPEIP-  157 (210)
T ss_dssp             SHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GCCEEEEEESSBCSSCC-
T ss_pred             CHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCcc-------CCCccEEEEccchhhhh-
Confidence            5666666666  789999999999999999999999886 799999999875432       46899999987554433 


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                        +.+.+.|+|||.+++.
T Consensus       158 --~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          158 --TALMTQLDEGGILVLP  173 (210)
T ss_dssp             --THHHHTEEEEEEEEEE
T ss_pred             --HHHHHhcccCcEEEEE
Confidence              3678899999999985

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.09  E-value=2.3e-09  Score=79.54  Aligned_cols=89  Identities=18%  Similarity=0.144  Sum_probs=70.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.-+..++..  +.+|+++|+++.+++.|++|++.+++.  ++++.+|+.+.++        .++||+|+++........
T Consensus       132 G~l~~~la~~--g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~--------~~~fD~Vv~n~~~~~~~~  199 (254)
T 2nxc_A          132 GVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP--------FGPFDLLVANLYAELHAA  199 (254)
T ss_dssp             SHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG--------GCCEEEEEEECCHHHHHH
T ss_pred             cHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc--------CCCCCEEEECCcHHHHHH
Confidence            3334344433  339999999999999999999998875  8999999987532        468999999876555677


Q ss_pred             HHHHHHhcccCCeEEEEeccc
Q 031568           82 YHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      +++.+.++|+|||.+++..+.
T Consensus       200 ~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          200 LAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCCEEEEEeec
Confidence            888999999999999986543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.08  E-value=2.4e-10  Score=83.59  Aligned_cols=93  Identities=19%  Similarity=0.216  Sum_probs=69.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..++. .+..+|+++|+++.+++.|+++.+..+  .+++++.+|+.+.++.+     ++++||+|++|...     
T Consensus        72 G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~-----~~~~fD~V~~d~~~~~~~~  143 (236)
T 1zx0_A           72 AIAASKVQE-APIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL-----PDGHFDGILYDTYPLSEET  143 (236)
T ss_dssp             SHHHHHHHT-SCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS-----CTTCEEEEEECCCCCBGGG
T ss_pred             CHHHHHHHh-cCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhccc-----CCCceEEEEECCcccchhh
Confidence            555555643 345599999999999999999988776  47999999999865433     25789999994321     


Q ss_pred             ---cccHHHHHHHHhcccCCeEEEEeccc
Q 031568           77 ---DNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        77 ---~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                         .....+++.+.++|+|||++++-+..
T Consensus       144 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          144 WHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             TTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             hhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence               11235688899999999999976543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.08  E-value=2.1e-10  Score=86.71  Aligned_cols=101  Identities=14%  Similarity=0.211  Sum_probs=73.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-----------------------------------------
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-----------------------------------------   40 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-----------------------------------------   40 (157)
                      |..|..++..+++.+|+++|+++.+++.|+++++..+..                                         
T Consensus        58 G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~  137 (292)
T 3g07_A           58 GHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPI  137 (292)
T ss_dssp             CHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------------------
T ss_pred             CHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccchhhhccCcc
Confidence            667777888888899999999999999999998765432                                         


Q ss_pred             ----------------CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---------cccHHHHHHHHhcccCCeE
Q 031568           41 ----------------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---------DNYCNYHERLMKLLKVGGI   95 (157)
Q Consensus        41 ----------------~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---------~~~~~~~~~~~~~L~~gG~   95 (157)
                                      ++++++.+|+.+....+..  ...++||+|++....         .....+++.+.++|+|||+
T Consensus       138 ~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~--~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~  215 (292)
T 3g07_A          138 AAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVE--AQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGI  215 (292)
T ss_dssp             ----CCSSTTCCSSTTTTEEEEECCCCCSSHHHHT--TCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred             ccccccccccccccccccceEEecccccCcccccc--ccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcE
Confidence                            5899999998743211110  025789999987642         1345678899999999999


Q ss_pred             EEEecccCC
Q 031568           96 AVYDNTLWG  104 (157)
Q Consensus        96 iv~~~~~~~  104 (157)
                      +++....|.
T Consensus       216 lil~~~~~~  224 (292)
T 3g07_A          216 LVLEPQPWS  224 (292)
T ss_dssp             EEEECCCHH
T ss_pred             EEEecCCch
Confidence            999765553

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.08  E-value=3.9e-10  Score=84.55  Aligned_cols=91  Identities=16%  Similarity=0.150  Sum_probs=72.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~   78 (157)
                      |..+..++..  +.+|+++|+++.+++.|+++++..++.++++++.+|+.+..+ +     ..++||+|++....   +.
T Consensus        80 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~-----~~~~fD~v~~~~~l~~~~~  151 (285)
T 4htf_A           80 GQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-H-----LETPVDLILFHAVLEWVAD  151 (285)
T ss_dssp             CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-G-----CSSCEEEEEEESCGGGCSC
T ss_pred             hHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-h-----cCCCceEEEECchhhcccC
Confidence            4444445544  789999999999999999999999987799999999987642 2     25789999987532   34


Q ss_pred             cHHHHHHHHhcccCCeEEEEec
Q 031568           79 YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ...+++.+.++|+|||++++..
T Consensus       152 ~~~~l~~~~~~LkpgG~l~~~~  173 (285)
T 4htf_A          152 PRSVLQTLWSVLRPGGVLSLMF  173 (285)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCeEEEEEE
Confidence            5788999999999999999854

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.07  E-value=6.7e-11  Score=84.51  Aligned_cols=93  Identities=9%  Similarity=0.085  Sum_probs=54.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      |..+..++...++.+++++|+++.+++.|++++...+.  +++++++|+.+.++....   ..++||+|+++++...   
T Consensus        42 G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~---~~~~fD~i~~npp~~~~~~  116 (215)
T 4dzr_A           42 GCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWLIERAE---RGRPWHAIVSNPPYIPTGE  116 (215)
T ss_dssp             CHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHHHHHHH---TTCCBSEEEECCCCCC---
T ss_pred             hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhhhhhhh---ccCcccEEEECCCCCCCcc
Confidence            55566677777889999999999999999999998877  799999999986653110   1378999999753210   


Q ss_pred             --------------------------cHHHHHHHHhcccCCeE-EEEe
Q 031568           79 --------------------------YCNYHERLMKLLKVGGI-AVYD   99 (157)
Q Consensus        79 --------------------------~~~~~~~~~~~L~~gG~-iv~~   99 (157)
                                                +..+++.+.++|+|||+ +++.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  164 (215)
T 4dzr_A          117 IDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE  164 (215)
T ss_dssp             ---------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred             ccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                                      15566777789999999 6654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.07  E-value=2.2e-09  Score=84.53  Aligned_cols=141  Identities=13%  Similarity=0.120  Sum_probs=89.6

Q ss_pred             cccHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCCC--
Q 031568            2 HLPTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADK--   76 (157)
Q Consensus         2 g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~~--   76 (157)
                      |.+++.+++ .+|+++|+++|+++.+.         . ..++++++++|+.+.  ...+..   ..++||+|++|...  
T Consensus       234 GG~Sl~la~~~fP~a~V~GVDiSp~m~---------~-~~~rI~fv~GDa~dlpf~~~l~~---~d~sFDlVisdgsH~~  300 (419)
T 3sso_A          234 GGGSLRMWKSFFPRGQIYGLDIMDKSH---------V-DELRIRTIQGDQNDAEFLDRIAR---RYGPFDIVIDDGSHIN  300 (419)
T ss_dssp             CCHHHHHHHHHCTTCEEEEEESSCCGG---------G-CBTTEEEEECCTTCHHHHHHHHH---HHCCEEEEEECSCCCH
T ss_pred             CHHHHHHHHHhCCCCEEEEEECCHHHh---------h-cCCCcEEEEecccccchhhhhhc---ccCCccEEEECCcccc
Confidence            345556665 45899999999999972         1 235899999999763  222211   03689999998754  


Q ss_pred             cccHHHHHHHHhcccCCeEEEEecccCCccccC-CCCCCCCCcccchHHHHHHHHHHhhcC---------CCee---EEe
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV-PEEQVPDHFRGSSRQAILDLNRSLADD---------PRVQ---LSH  143 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~---~~~  143 (157)
                      ......|+.+.++|||||+++++++..+..... +....+....+ +.+.++++...+...         |.+.   ..-
T Consensus       301 ~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~t-ii~~lk~l~D~l~~~~~~~~~~~~~~~~~~~~~~  379 (419)
T 3sso_A          301 AHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGT-SLGLLKSLIDAIQHQELPSDPNRSPGYVDRNIVG  379 (419)
T ss_dssp             HHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTS-HHHHHHHHHHHHTGGGSCCCTTCCCCHHHHHEEE
T ss_pred             hhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhH-HHHHHHHHHHHhcccccCCCcCCCCCccccceeE
Confidence            235677999999999999999988763211111 10000011122 777788887766531         2221   344


Q ss_pred             eecCCeeEEEEEe
Q 031568          144 VALGDGITICRRI  156 (157)
Q Consensus       144 ~p~~~G~~v~~~~  156 (157)
                      +.+-++|.+..|.
T Consensus       380 ~h~y~~i~~~~kg  392 (419)
T 3sso_A          380 LHVYHNVAFVEKG  392 (419)
T ss_dssp             EEEETTEEEEEES
T ss_pred             EEecCcEEEEEec
Confidence            6677888777764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.07  E-value=5.6e-11  Score=88.88  Aligned_cols=84  Identities=10%  Similarity=0.103  Sum_probs=65.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |..+..+++. + .+|+++|+++.+++.|++++...  ++ .++++++.+|+.+++          ++||+|++|...+ 
T Consensus        84 G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------~~fD~Ii~d~~dp-  150 (262)
T 2cmg_A           84 LELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------KKYDLIFCLQEPD-  150 (262)
T ss_dssp             HHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------CCEEEEEESSCCC-
T ss_pred             CHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------hhCCEEEECCCCh-
Confidence            3334444545 6 99999999999999999987541  22 358999999998753          4799999997533 


Q ss_pred             cHHHHHHHHhcccCCeEEEEe
Q 031568           79 YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~   99 (157)
                       ..+++.+.+.|+|||++++.
T Consensus       151 -~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          151 -IHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             -HHHHHHHHTTEEEEEEEEEE
T ss_pred             -HHHHHHHHHhcCCCcEEEEE
Confidence             45899999999999999985

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.06  E-value=8e-10  Score=82.41  Aligned_cols=96  Identities=14%  Similarity=0.072  Sum_probs=70.7

Q ss_pred             CcccHHHHHhh-------CCC-----cEEEEEeCCh--------------hHHHHHHHHHHHc----------CCC---C
Q 031568            1 MHLPTKLFMTG-------NKI-----LQITAIDVNR--------------ETYEIGLPIIKKA----------GVD---H   41 (157)
Q Consensus         1 ~g~st~~l~~~-------~~~-----~~v~~ve~~~--------------~~~~~a~~~~~~~----------~~~---~   41 (157)
                      ||++++.++..       .|+     .+++++|.+|              +..+.|+++++..          .+.   .
T Consensus        71 tG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~r~~~~~~~~  150 (257)
T 2qy6_A           71 TGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRV  150 (257)
T ss_dssp             TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEEEEEEC--CE
T ss_pred             hHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchhheeccCCce
Confidence            68888886653       564     5899999987              4555778887752          121   3


Q ss_pred             cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEE
Q 031568           42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      +++++.||+.+.++.+...  ...+||+||+|+..+      .+.++++.+.++|+|||+++.
T Consensus       151 ~l~l~~GDa~~~l~~~~~~--~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          151 TLDLWFGDINELISQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEESCHHHHGGGSCGG--GTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEECcHHHHHhhcccc--cCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence            6889999999998865200  012799999997322      267899999999999999986

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=99.06  E-value=3e-09  Score=79.13  Aligned_cols=100  Identities=13%  Similarity=0.058  Sum_probs=70.4

Q ss_pred             HcCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-cccHHHHHHHHhcccCCeEEEEecccCCccccCCCCC
Q 031568           36 KAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQ  113 (157)
Q Consensus        36 ~~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~  113 (157)
                      ..|. .++|+++.|++.+.++.+.+. .+.++||+|++|+++ ..+..+++.+.++|+|||+|++||....+        
T Consensus       152 ~~g~~~~~i~li~G~~~dTL~~~l~~-~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~--------  222 (257)
T 3tos_A          152 FFGHVTQRSVLVEGDVRETVPRYLAE-NPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPK--------  222 (257)
T ss_dssp             TTTTSCCSEEEEESCHHHHHHHHHHH-CTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTT--------
T ss_pred             hcCCCCCcEEEEEecHHHHHHHHHHh-CCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCC--------
Confidence            4565 478999999999999876321 123479999999986 34566899999999999999999964211        


Q ss_pred             CCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEE
Q 031568          114 VPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC  153 (157)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~  153 (157)
                      +         ..+++.++.+....+.....+|++.+....
T Consensus       223 w---------~G~~~A~~ef~~~~~~~i~~~p~~~~~~y~  253 (257)
T 3tos_A          223 W---------PGENIAMRKVLGLDHAPLRLLPGRPAPAYL  253 (257)
T ss_dssp             C---------THHHHHHHHHTCTTSSCCEECTTCSCCEEE
T ss_pred             C---------hHHHHHHHHHHhhCCCeEEEccCCCCCEEE
Confidence            1         134444444455556677788888766443

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.06  E-value=5.4e-10  Score=83.24  Aligned_cols=94  Identities=24%  Similarity=0.298  Sum_probs=76.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++...|+.+++++|+++.+++.|++++...+.. +++++.+|+.+..  +     +.++||+|++...   .+.
T Consensus        49 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~-----~~~~fD~v~~~~~l~~~~~  120 (276)
T 3mgg_A           49 GAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLP--F-----EDSSFDHIFVCFVLEHLQS  120 (276)
T ss_dssp             SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCC--S-----CTTCEEEEEEESCGGGCSC
T ss_pred             CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCC--C-----CCCCeeEEEEechhhhcCC
Confidence            555666777778999999999999999999999998885 7999999998642  1     2578999998753   234


Q ss_pred             cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ...+++.+.++|+|||++++.....
T Consensus       121 ~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          121 PEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            5688999999999999999865433

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=99.06  E-value=2.3e-09  Score=83.64  Aligned_cols=132  Identities=14%  Similarity=0.060  Sum_probs=87.2

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC---C----CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG---V----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~---~----~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      ++.-+.+.+..+|+.||+||+.++.|++++....   .    .+|++++.+|+.+++++..+.   .++||+|++|....
T Consensus       219 ~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~---~~~yDvIIvDl~D~  295 (381)
T 3c6k_A          219 ILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE---GREFDYVINDLTAV  295 (381)
T ss_dssp             HHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH---TCCEEEEEEECCSS
T ss_pred             HHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc---cCceeEEEECCCCC
Confidence            3333335567899999999999999999874311   1    246999999999999865321   46899999995210


Q ss_pred             -------------ccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcC-CCee---
Q 031568           78 -------------NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD-PRVQ---  140 (157)
Q Consensus        78 -------------~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~---  140 (157)
                                   ...++++.+.+.|+|||+++...-..    .             ..+.+..+.+.++.- +.+.   
T Consensus       296 ~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~----~-------------~~~~~~~i~~tl~~vF~~v~~~~  358 (381)
T 3c6k_A          296 PISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV----N-------------LTEALSLYEEQLGRLYCPVEFSK  358 (381)
T ss_dssp             CCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET----T-------------CHHHHHHHHHHHTTSSSCEEEEE
T ss_pred             cccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC----c-------------chhHHHHHHHHHHHhCCcceEee
Confidence                         12567888999999999999852110    0             223445555555542 3332   


Q ss_pred             -EEeeec---CCeeEEEEEe
Q 031568          141 -LSHVAL---GDGITICRRI  156 (157)
Q Consensus       141 -~~~~p~---~~G~~v~~~~  156 (157)
                       .+.+|.   .+|+.++-|.
T Consensus       359 ~~~~VPSy~~~W~F~~aSK~  378 (381)
T 3c6k_A          359 EIVCVPSYLELWVFYTVWKK  378 (381)
T ss_dssp             EEECCGGGSSCEEEEEEEEC
T ss_pred             EEEEecCCCCceeeeEEECC
Confidence             233453   5788888774

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.05  E-value=4.4e-10  Score=82.78  Aligned_cols=89  Identities=11%  Similarity=0.021  Sum_probs=72.2

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |..+..++.. .|+.+|+++|+++.+++.|+++++.. | .++++++.+|+.+. + +     +.++||+|++|..  ..
T Consensus       108 G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~-~-~-----~~~~~D~v~~~~~--~~  177 (258)
T 2pwy_A          108 GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEA-E-L-----EEAAYDGVALDLM--EP  177 (258)
T ss_dssp             SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGC-C-C-----CTTCEEEEEEESS--CG
T ss_pred             CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhc-C-C-----CCCCcCEEEECCc--CH
Confidence            5556666665 57899999999999999999999988 7 45899999999875 1 1     1467999999864  34


Q ss_pred             HHHHHHHHhcccCCeEEEEec
Q 031568           80 CNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ..+++.+.+.|+|||.+++..
T Consensus       178 ~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          178 WKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             GGGHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEEe
Confidence            567899999999999998843

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.04  E-value=3.4e-10  Score=84.81  Aligned_cols=88  Identities=10%  Similarity=0.207  Sum_probs=72.2

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |..+..++.. .|+.+|+++|+++.+++.|+++++.. |. ++++++.+|+.+.+        +.++||+|++|..  ..
T Consensus       122 G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~--------~~~~fD~Vi~~~~--~~  190 (275)
T 1yb2_A          122 GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFI--------SDQMYDAVIADIP--DP  190 (275)
T ss_dssp             SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCC--------CSCCEEEEEECCS--CG
T ss_pred             CHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccC--------cCCCccEEEEcCc--CH
Confidence            4455566665 67899999999999999999999988 75 48999999998732        2468999999764  44


Q ss_pred             HHHHHHHHhcccCCeEEEEec
Q 031568           80 CNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ..+++.+.+.|+|||++++..
T Consensus       191 ~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          191 WNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             GGSHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEe
Confidence            678899999999999998854

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.03  E-value=1.3e-09  Score=84.09  Aligned_cols=81  Identities=22%  Similarity=0.215  Sum_probs=68.8

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL   90 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L   90 (157)
                      +.++.+|+++|+++.+++.|++|++.+++.++++++.+|+.+++          ++||+|++|++.. ...+++.+.++|
T Consensus       213 a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----------~~fD~Vi~dpP~~-~~~~l~~~~~~L  281 (336)
T 2yx1_A          213 CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----------VKGNRVIMNLPKF-AHKFIDKALDIV  281 (336)
T ss_dssp             TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----------CCEEEEEECCTTT-GGGGHHHHHHHE
T ss_pred             ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----------CCCcEEEECCcHh-HHHHHHHHHHHc
Confidence            33688999999999999999999999999778999999998753          4799999997533 347888999999


Q ss_pred             cCCeEEEEeccc
Q 031568           91 KVGGIAVYDNTL  102 (157)
Q Consensus        91 ~~gG~iv~~~~~  102 (157)
                      +|||++++..+.
T Consensus       282 ~~gG~l~~~~~~  293 (336)
T 2yx1_A          282 EEGGVIHYYTIG  293 (336)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CCCCEEEEEEee
Confidence            999999886543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.01  E-value=7e-10  Score=81.26  Aligned_cols=88  Identities=19%  Similarity=0.206  Sum_probs=71.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..++..  +.+++++|+++++++.|+++++..++.++++++.+|+.+...       ..++||+|+++..  ....
T Consensus       103 G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~D~v~~~~~--~~~~  171 (248)
T 2yvl_A          103 GALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV-------PEGIFHAAFVDVR--EPWH  171 (248)
T ss_dssp             SHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC-------CTTCBSEEEECSS--CGGG
T ss_pred             cHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc-------CCCcccEEEECCc--CHHH
Confidence            4455556656  789999999999999999999999987789999999987430       1457999999865  3456


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.|+|||.+++..
T Consensus       172 ~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          172 YLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             GHHHHHHHBCTTCEEEEEE
T ss_pred             HHHHHHHHcCCCCEEEEEe
Confidence            7889999999999999854

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.01  E-value=6.3e-10  Score=85.57  Aligned_cols=90  Identities=12%  Similarity=0.134  Sum_probs=67.8

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcC----------CCCcEEEEEccHHHHHHHHhhcCCCCCceeEE
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAG----------VDHKINFIESEALSVLDQLLKYSENEGSFDYA   70 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~----------~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I   70 (157)
                      |..|..++.. .|.++|+++|+++.+++.|++|++..+          ..++++++.+|+.+..+.+.     .++||+|
T Consensus       117 G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~-----~~~fD~V  191 (336)
T 2b25_A          117 GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK-----SLTFDAV  191 (336)
T ss_dssp             SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC------------EEEE
T ss_pred             CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC-----CCCeeEE
Confidence            5556667765 477999999999999999999998643          23589999999987543331     4579999


Q ss_pred             EEcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568           71 FVDADKDNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        71 ~iD~~~~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      ++|...  ....++.+.+.|+|||.+++
T Consensus       192 ~~~~~~--~~~~l~~~~~~LkpgG~lv~  217 (336)
T 2b25_A          192 ALDMLN--PHVTLPVFYPHLKHGGVCAV  217 (336)
T ss_dssp             EECSSS--TTTTHHHHGGGEEEEEEEEE
T ss_pred             EECCCC--HHHHHHHHHHhcCCCcEEEE
Confidence            998653  23468899999999999986

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.01  E-value=1.8e-09  Score=82.22  Aligned_cols=91  Identities=5%  Similarity=0.095  Sum_probs=73.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~   76 (157)
                      |..+..++... +.+|+++|+++++++.|+++++..++.++++++.+|+.+.          +++||+|++...     .
T Consensus       102 G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~~fD~v~~~~~l~~~~~  170 (318)
T 2fk8_A          102 GTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----------AEPVDRIVSIEAFEHFGH  170 (318)
T ss_dssp             SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----------CCCCSEEEEESCGGGTCG
T ss_pred             hHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC----------CCCcCEEEEeChHHhcCH
Confidence            44455555554 6799999999999999999999999887899999998653          367999998742     2


Q ss_pred             cccHHHHHHHHhcccCCeEEEEecccC
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      +....+++.+.++|+|||.+++.....
T Consensus       171 ~~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          171 ENYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             GGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            456788999999999999999866543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.00  E-value=8.5e-10  Score=79.99  Aligned_cols=92  Identities=20%  Similarity=0.184  Sum_probs=70.6

Q ss_pred             cccHHHHHhhC-----CCcEEEEEeCChhHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEE
Q 031568            2 HLPTKLFMTGN-----KILQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENEGSFDYAFV   72 (157)
Q Consensus         2 g~st~~l~~~~-----~~~~v~~ve~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~i   72 (157)
                      |..|..++...     |.++|+++|+++++++.|+++++..++    .++++++.+|+.+..+....   ..++||+|++
T Consensus        92 G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~fD~I~~  168 (227)
T 2pbf_A           92 GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK---ELGLFDAIHV  168 (227)
T ss_dssp             SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH---HHCCEEEEEE
T ss_pred             CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc---cCCCcCEEEE
Confidence            66677777654     568999999999999999999998873    35899999999874311000   0357999999


Q ss_pred             cCCCcccHHHHHHHHhcccCCeEEEEe
Q 031568           73 DADKDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        73 D~~~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      +.....   +++.+.+.|+|||++++.
T Consensus       169 ~~~~~~---~~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          169 GASASE---LPEILVDLLAENGKLIIP  192 (227)
T ss_dssp             CSBBSS---CCHHHHHHEEEEEEEEEE
T ss_pred             CCchHH---HHHHHHHhcCCCcEEEEE
Confidence            876544   357778999999999885

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.99  E-value=1e-10  Score=85.58  Aligned_cols=89  Identities=16%  Similarity=0.144  Sum_probs=69.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH-
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC-   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~-   80 (157)
                      |..+..++..  +.+|+++|+++.+++.|+++++..++.++++++++|+.+..+        .++||+|++++...... 
T Consensus        90 G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~D~v~~~~~~~~~~~  159 (241)
T 3gdh_A           90 GGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS--------FLKADVVFLSPPWGGPDY  159 (241)
T ss_dssp             SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--------GCCCSEEEECCCCSSGGG
T ss_pred             CHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--------cCCCCEEEECCCcCCcch
Confidence            4445555554  589999999999999999999999987789999999988642        46899999997543221 


Q ss_pred             --HHHHHHHhcccCCeEEEEec
Q 031568           81 --NYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        81 --~~~~~~~~~L~~gG~iv~~~  100 (157)
                        ..+..+.++|+|||+++++.
T Consensus       160 ~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          160 ATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             GGSSSBCTTTSCSSCHHHHHHH
T ss_pred             hhhHHHHHHhhcCCcceeHHHH
Confidence              13445668899999987754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.99  E-value=1.3e-09  Score=79.10  Aligned_cols=91  Identities=15%  Similarity=0.071  Sum_probs=69.4

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..+..++.. .++++|+++|+++.+++.++++++..   ++++++.+|+.+......    ..++||+|++|.......
T Consensus        85 G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~----~~~~~D~v~~~~~~~~~~  157 (227)
T 1g8a_A           85 GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRA----LVPKVDVIFEDVAQPTQA  157 (227)
T ss_dssp             TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTT----TCCCEEEEEECCCSTTHH
T ss_pred             CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhc----ccCCceEEEECCCCHhHH
Confidence            5556667765 36789999999999999999988765   589999999976321000    135799999998644433


Q ss_pred             -HHHHHHHhcccCCeEEEEe
Q 031568           81 -NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 -~~~~~~~~~L~~gG~iv~~   99 (157)
                       .+++.+.+.|+|||.+++.
T Consensus       158 ~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          158 KILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEEE
Confidence             3488999999999999885

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.99  E-value=1.8e-09  Score=83.67  Aligned_cols=84  Identities=14%  Similarity=0.163  Sum_probs=68.9

Q ss_pred             HHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---------
Q 031568            8 FMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---------   77 (157)
Q Consensus         8 l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---------   77 (157)
                      ++... |+.+++++|+++.+++.|++|++.+|+. +++++++|+.+...       +.++||+|++|++..         
T Consensus       221 ~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~-------~~~~~D~Ii~npPyg~r~~~~~~~  292 (354)
T 3tma_A          221 AASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPR-------FFPEVDRILANPPHGLRLGRKEGL  292 (354)
T ss_dssp             HHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGG-------TCCCCSEEEECCCSCC----CHHH
T ss_pred             HHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcc-------ccCCCCEEEECCCCcCccCCcccH
Confidence            33333 7899999999999999999999999997 89999999988632       145699999997532         


Q ss_pred             --ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 --NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 --~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                        .|..+++.+.++|+|||.+++-
T Consensus       293 ~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          293 FHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             HHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEE
Confidence              1466788888999999999884

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.99  E-value=1.5e-09  Score=80.68  Aligned_cols=94  Identities=16%  Similarity=0.295  Sum_probs=75.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++... +.+|+++|+++.+++.|++++...++.++++++.+|+.+. + +     +.++||+|++...   .+.
T Consensus        73 G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~  144 (273)
T 3bus_A           73 GKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-P-F-----EDASFDAVWALESLHHMPD  144 (273)
T ss_dssp             SHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-S-----CTTCEEEEEEESCTTTSSC
T ss_pred             CHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-C-C-----CCCCccEEEEechhhhCCC
Confidence            44555566554 7899999999999999999999999888999999999763 2 1     2468999997642   234


Q ss_pred             cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ...+++.+.+.|+|||.+++.+...
T Consensus       145 ~~~~l~~~~~~L~pgG~l~i~~~~~  169 (273)
T 3bus_A          145 RGRALREMARVLRPGGTVAIADFVL  169 (273)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCeEEEEEEeec
Confidence            5788999999999999999876543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.98  E-value=3.3e-09  Score=79.45  Aligned_cols=90  Identities=6%  Similarity=0.058  Sum_probs=72.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~   76 (157)
                      |..+..++... +.+|+++|+++++++.|+++++..++.++++++.+|+.+.          .++||+|++...     .
T Consensus        76 G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----------~~~fD~v~~~~~l~~~~~  144 (287)
T 1kpg_A           76 GATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----------DEPVDRIVSIGAFEHFGH  144 (287)
T ss_dssp             SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----------CCCCSEEEEESCGGGTCT
T ss_pred             cHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----------CCCeeEEEEeCchhhcCh
Confidence            44455566444 4599999999999999999999998888999999999642          368999998642     2


Q ss_pred             cccHHHHHHHHhcccCCeEEEEeccc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      .....+++.+.++|+|||.+++....
T Consensus       145 ~~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          145 ERYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             TTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            45678899999999999999986654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.97  E-value=1.2e-09  Score=81.99  Aligned_cols=91  Identities=14%  Similarity=0.133  Sum_probs=73.8

Q ss_pred             cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 031568            2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD   77 (157)
Q Consensus         2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~   77 (157)
                      |..+..++...| +.+|+++|+++.+++.|++++...+.  +++++.+|+.+. +       ..++||+|++...   .+
T Consensus        34 G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~-~-------~~~~fD~v~~~~~l~~~~  103 (284)
T 3gu3_A           34 GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-E-------LNDKYDIAICHAFLLHMT  103 (284)
T ss_dssp             THHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-C-------CSSCEEEEEEESCGGGCS
T ss_pred             CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhc-C-------cCCCeeEEEECChhhcCC
Confidence            556666777777 58999999999999999999987765  899999999864 2       1468999998763   23


Q ss_pred             ccHHHHHHHHhcccCCeEEEEeccc
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ....+++.+.+.|+|||.+++.+..
T Consensus       104 ~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A          104 TPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CHHHHHHHHHHHcCCCCEEEEEecc
Confidence            4578899999999999999986554

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.97  E-value=1.6e-09  Score=77.92  Aligned_cols=93  Identities=16%  Similarity=0.172  Sum_probs=75.2

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---c
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---D   77 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~   77 (157)
                      |..+..++... |..+|+++|+++.+++.|++++...++. +++++.+|+.+.-  +     ..++||+|++....   .
T Consensus        49 G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~-----~~~~fD~v~~~~~l~~~~  120 (219)
T 3dh0_A           49 GFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIP--L-----PDNTVDFIFMAFTFHELS  120 (219)
T ss_dssp             CTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCS--S-----CSSCEEEEEEESCGGGCS
T ss_pred             CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCC--C-----CCCCeeEEEeehhhhhcC
Confidence            55666677654 7889999999999999999999998886 8999999997641  1     25689999987532   3


Q ss_pred             ccHHHHHHHHhcccCCeEEEEeccc
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ....+++.+.++|+|||.+++.+..
T Consensus       121 ~~~~~l~~~~~~LkpgG~l~i~~~~  145 (219)
T 3dh0_A          121 EPLKFLEELKRVAKPFAYLAIIDWK  145 (219)
T ss_dssp             SHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHHHhCCCeEEEEEEec
Confidence            4577899999999999999986543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.97  E-value=1.3e-09  Score=79.47  Aligned_cols=91  Identities=13%  Similarity=-0.020  Sum_probs=69.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-ccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-NYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-~~~   80 (157)
                      |..+..++...+.++|+++|+++.+++.|+++++..   ++++++.+|+.+....+.    ..++||+|+.+...+ ...
T Consensus        86 G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~----~~~~~D~v~~~~~~~~~~~  158 (230)
T 1fbn_A           86 GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYAN----IVEKVDVIYEDVAQPNQAE  158 (230)
T ss_dssp             SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTT----TSCCEEEEEECCCSTTHHH
T ss_pred             CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccc----cCccEEEEEEecCChhHHH
Confidence            556666777767789999999999999999987654   589999999876211010    136799999875432 236


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      .+++.+.+.|+|||.+++.
T Consensus       159 ~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          159 ILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             HHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHhCCCCcEEEEE
Confidence            6789999999999999985

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.97  E-value=7.5e-10  Score=80.49  Aligned_cols=90  Identities=18%  Similarity=0.206  Sum_probs=71.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      |..+..++...|+.+++++|+++.+++.|++++...+   +++++.+|+.+...        .++||+|++......   
T Consensus        56 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~--------~~~fD~v~~~~~l~~~~~  124 (234)
T 3dtn_A           56 GLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF--------EEKYDMVVSALSIHHLED  124 (234)
T ss_dssp             SHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC--------CSCEEEEEEESCGGGSCH
T ss_pred             CHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC--------CCCceEEEEeCccccCCH
Confidence            5566777778889999999999999999999886554   79999999976421        368999998763221   


Q ss_pred             --cHHHHHHHHhcccCCeEEEEeccc
Q 031568           79 --YCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        79 --~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                        ...+++.+.+.|+|||.+++.+..
T Consensus       125 ~~~~~~l~~~~~~LkpgG~l~~~~~~  150 (234)
T 3dtn_A          125 EDKKELYKRSYSILKESGIFINADLV  150 (234)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEec
Confidence              224789999999999999986543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.97  E-value=2.3e-09  Score=80.90  Aligned_cols=95  Identities=13%  Similarity=0.078  Sum_probs=71.8

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhh-cCCCCCceeEEEEcCCCc-
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLK-YSENEGSFDYAFVDADKD-   77 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~-~~~~~~~fD~I~iD~~~~-   77 (157)
                      |..+..++... ++.+|+++|+++.+++.|+++++.. +...+++++++|+.+.-  +.. .....++||+|++..... 
T Consensus        48 G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~fD~V~~~~~l~~  125 (299)
T 3g5t_A           48 GTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK--FLGADSVDKQKIDMITAVECAHW  125 (299)
T ss_dssp             THHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG--GGCTTTTTSSCEEEEEEESCGGG
T ss_pred             CHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC--ccccccccCCCeeEEeHhhHHHH
Confidence            55556666654 8999999999999999999999987 55578999999997642  110 000016899999865311 


Q ss_pred             -ccHHHHHHHHhcccCCeEEEE
Q 031568           78 -NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~   98 (157)
                       ....+++.+.+.|+|||.+++
T Consensus       126 ~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          126 FDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEE
T ss_pred             hCHHHHHHHHHHhcCCCcEEEE
Confidence             567889999999999999987

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.95  E-value=6.4e-09  Score=77.91  Aligned_cols=86  Identities=10%  Similarity=0.065  Sum_probs=68.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~   76 (157)
                      |..+..++..  +.+|+++|+++.+++.|++++...++  +++++.+|+.+..        ..++||+|++...     .
T Consensus       132 G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--------~~~~fD~i~~~~~~~~~~~  199 (286)
T 3m70_A          132 GRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAAN--------IQENYDFIVSTVVFMFLNR  199 (286)
T ss_dssp             CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCC--------CCSCEEEEEECSSGGGSCG
T ss_pred             CHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEecccccc--------ccCCccEEEEccchhhCCH
Confidence            4445555554  67999999999999999999999887  7999999998642        1468999998753     2


Q ss_pred             cccHHHHHHHHhcccCCeEEEEe
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      +....+++.+.++|+|||.+++-
T Consensus       200 ~~~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          200 ERVPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEE
Confidence            34567899999999999997663

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.95  E-value=9.6e-09  Score=75.45  Aligned_cols=92  Identities=11%  Similarity=-0.019  Sum_probs=64.7

Q ss_pred             CcccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|..|..++.. .+.++|+++|+++.+++...+..++.   .++.++.+|+.......    ...++||+||+|...+..
T Consensus        87 tG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~----~~~~~~D~I~~d~a~~~~  159 (232)
T 3id6_C           87 SGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYK----SVVENVDVLYVDIAQPDQ  159 (232)
T ss_dssp             TSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTT----TTCCCEEEEEECCCCTTH
T ss_pred             CCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhh----ccccceEEEEecCCChhH
Confidence            36667777763 47899999999999976555544432   47999999987532100    013589999999876554


Q ss_pred             HHHHH-HHHhcccCCeEEEEe
Q 031568           80 CNYHE-RLMKLLKVGGIAVYD   99 (157)
Q Consensus        80 ~~~~~-~~~~~L~~gG~iv~~   99 (157)
                      ...+. .+.+.|+|||.+++.
T Consensus       160 ~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          160 TDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCeEEEEE
Confidence            55554 444599999999985

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.95  E-value=1.6e-09  Score=77.84  Aligned_cols=87  Identities=17%  Similarity=0.146  Sum_probs=69.2

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..+..++... |..+|+++|+++.+++.|++++...+.. +++++.+|+.+.++.       .++||+|+++.......
T Consensus        89 G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~~fD~v~~~~~~~~~~  160 (215)
T 2yxe_A           89 GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYEP-------LAPYDRIYTTAAGPKIP  160 (215)
T ss_dssp             SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCGG-------GCCEEEEEESSBBSSCC
T ss_pred             cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCC-------CCCeeEEEECCchHHHH
Confidence            55666677654 5689999999999999999999998875 699999998654321       35799999987654433


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                         +.+.++|+|||.+++.
T Consensus       161 ---~~~~~~L~pgG~lv~~  176 (215)
T 2yxe_A          161 ---EPLIRQLKDGGKLLMP  176 (215)
T ss_dssp             ---HHHHHTEEEEEEEEEE
T ss_pred             ---HHHHHHcCCCcEEEEE
Confidence               5778999999999885

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.94  E-value=3.5e-09  Score=82.64  Aligned_cols=94  Identities=11%  Similarity=0.092  Sum_probs=67.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcC---------CCCCceeEEEE
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS---------ENEGSFDYAFV   72 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~---------~~~~~fD~I~i   72 (157)
                      |.-++.++.  ...+|+++|+++++++.|++|++.+|+. +++++.+|+.+.++.+....         ....+||+|++
T Consensus       225 G~~~l~la~--~~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~  301 (369)
T 3bt7_A          225 GNFSLALAR--NFDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV  301 (369)
T ss_dssp             SHHHHHHGG--GSSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEE
T ss_pred             CHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEE
Confidence            333444443  4679999999999999999999999985 89999999999887652100         00027999999


Q ss_pred             cCCCcccHHHHHHHHhcccCCeEEEEecc
Q 031568           73 DADKDNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        73 D~~~~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      |++....   .+.+.+.|+++|.|++-.+
T Consensus       302 dPPr~g~---~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          302 DPPRSGL---DSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             CCCTTCC---CHHHHHHHTTSSEEEEEES
T ss_pred             CcCcccc---HHHHHHHHhCCCEEEEEEC
Confidence            9875432   2345566678888887544

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.94  E-value=5.3e-09  Score=76.12  Aligned_cols=81  Identities=11%  Similarity=0.099  Sum_probs=66.9

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----CcccHHHHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLM   87 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~~~~~~~~~~~~   87 (157)
                      ++.+|+++|+++.+++.|++++...+...+++++.+|+.+..        ..++||+|++...     ......+++.+.
T Consensus        87 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~  158 (235)
T 3lcc_A           87 PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR--------PTELFDLIFDYVFFCAIEPEMRPAWAKSMY  158 (235)
T ss_dssp             TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC--------CSSCEEEEEEESSTTTSCGGGHHHHHHHHH
T ss_pred             CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC--------CCCCeeEEEEChhhhcCCHHHHHHHHHHHH
Confidence            688999999999999999999987666678999999998742        1468999997542     225577899999


Q ss_pred             hcccCCeEEEEecc
Q 031568           88 KLLKVGGIAVYDNT  101 (157)
Q Consensus        88 ~~L~~gG~iv~~~~  101 (157)
                      ++|+|||.+++...
T Consensus       159 ~~LkpgG~l~~~~~  172 (235)
T 3lcc_A          159 ELLKPDGELITLMY  172 (235)
T ss_dssp             HHEEEEEEEEEEEC
T ss_pred             HHCCCCcEEEEEEe
Confidence            99999999998543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.93  E-value=1.7e-09  Score=82.28  Aligned_cols=92  Identities=11%  Similarity=0.138  Sum_probs=73.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC--ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--~~~   79 (157)
                      |..+..++... +.+|+++|+++.+++.|+++++..++.++++++.+|+.+. + +     +.++||+|++....  -..
T Consensus       129 G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD~V~~~~~l~~~~~  200 (312)
T 3vc1_A          129 GGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-P-F-----DKGAVTASWNNESTMYVDL  200 (312)
T ss_dssp             SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-C-----CTTCEEEEEEESCGGGSCH
T ss_pred             CHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-C-C-----CCCCEeEEEECCchhhCCH
Confidence            44455566553 6899999999999999999999999988999999999763 2 1     25789999985421  136


Q ss_pred             HHHHHHHHhcccCCeEEEEecc
Q 031568           80 CNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ..+++.+.++|+|||.+++-..
T Consensus       201 ~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          201 HDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEEEc
Confidence            7889999999999999998554

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.93  E-value=3.1e-09  Score=79.35  Aligned_cols=90  Identities=17%  Similarity=0.158  Sum_probs=72.1

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHc-C-CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKA-G-VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~-~-~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |..+..++.. .|+++|+++|+++++++.|+++++.. | +.++++++.+|+.+..  +     +.++||+|+++..  .
T Consensus       111 G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~--~-----~~~~~D~v~~~~~--~  181 (280)
T 1i9g_A          111 GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE--L-----PDGSVDRAVLDML--A  181 (280)
T ss_dssp             SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC--C-----CTTCEEEEEEESS--C
T ss_pred             cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC--C-----CCCceeEEEECCc--C
Confidence            4455566663 47899999999999999999999987 5 4568999999998751  1     1467999999865  3


Q ss_pred             cHHHHHHHHhcccCCeEEEEec
Q 031568           79 YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ...+++.+.+.|+|||.+++..
T Consensus       182 ~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          182 PWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             GGGGHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCCEEEEEe
Confidence            4577899999999999999853

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.92  E-value=4.5e-09  Score=75.89  Aligned_cols=92  Identities=14%  Similarity=0.023  Sum_probs=66.9

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      .|..|..++...++++|+++|+++.+++.+.+..+..   .++.++.+|+.+......    ..++||+|+++...+...
T Consensus        68 tG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~----~~~~fD~V~~~~~~~~~~  140 (210)
T 1nt2_A           68 SGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSG----IVEKVDLIYQDIAQKNQI  140 (210)
T ss_dssp             TSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTT----TCCCEEEEEECCCSTTHH
T ss_pred             CCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcc----cccceeEEEEeccChhHH
Confidence            3666677777666789999999999987777766543   368899999875311000    136899999986443323


Q ss_pred             -HHHHHHHhcccCCeEEEEe
Q 031568           81 -NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 -~~~~~~~~~L~~gG~iv~~   99 (157)
                       .+++.+.+.|+|||.+++.
T Consensus       141 ~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          141 EILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEE
Confidence             3478899999999999986

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.92  E-value=2.1e-09  Score=80.90  Aligned_cols=93  Identities=11%  Similarity=0.207  Sum_probs=74.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++... +.+|+++|+++.+++.|+++++..++.++++++.+|+.+. + +     ++++||+|++...   .+.
T Consensus        94 G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~  165 (297)
T 2o57_A           94 GGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-C-----EDNSYDFIWSQDAFLHSPD  165 (297)
T ss_dssp             SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-S-----CTTCEEEEEEESCGGGCSC
T ss_pred             CHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-C-C-----CCCCEeEEEecchhhhcCC
Confidence            44555566553 5699999999999999999999999888999999999763 2 1     2568999998643   234


Q ss_pred             cHHHHHHHHhcccCCeEEEEeccc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ...+++.+.+.|+|||.+++....
T Consensus       166 ~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          166 KLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCeEEEEEEec
Confidence            578899999999999999987554

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.92  E-value=3.4e-09  Score=76.73  Aligned_cols=89  Identities=17%  Similarity=0.195  Sum_probs=69.8

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      |..|..++.. .+.++|+++|+++.+++.++++++..+.    .++++++.+|+.+....       .++||+|+++...
T Consensus        89 G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~fD~i~~~~~~  161 (226)
T 1i1n_A           89 GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-------EAPYDAIHVGAAA  161 (226)
T ss_dssp             SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-------GCCEEEEEECSBB
T ss_pred             CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc-------CCCcCEEEECCch
Confidence            5566667765 3668999999999999999999998764    35899999998753221       4579999998764


Q ss_pred             cccHHHHHHHHhcccCCeEEEEec
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ..   +++.+.+.|+|||++++..
T Consensus       162 ~~---~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          162 PV---VPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             SS---CCHHHHHTEEEEEEEEEEE
T ss_pred             HH---HHHHHHHhcCCCcEEEEEE
Confidence            43   3467889999999999853

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.92  E-value=4e-10  Score=83.11  Aligned_cols=93  Identities=12%  Similarity=0.120  Sum_probs=68.0

Q ss_pred             cccHHHHHhh--CCCcEEEEEeCChhHHHHHHHHHHHc---CCCCc-------------------------EE-------
Q 031568            2 HLPTKLFMTG--NKILQITAIDVNRETYEIGLPIIKKA---GVDHK-------------------------IN-------   44 (157)
Q Consensus         2 g~st~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~---~~~~~-------------------------i~-------   44 (157)
                      |.-+..++..  .++.+|+++|+++.+++.|++|+...   ++.++                         ++       
T Consensus        63 G~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  142 (250)
T 1o9g_A           63 GYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEG  142 (250)
T ss_dssp             SHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhhhhhhhhccccc
Confidence            4334445555  56789999999999999999999876   55333                         67       


Q ss_pred             ------EEEccHHHHHHH--HhhcCCCCCceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEE
Q 031568           45 ------FIESEALSVLDQ--LLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        45 ------~~~~d~~~~l~~--~~~~~~~~~~fD~I~iD~~~------------~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                            ++++|+.+..+.  ..    ..++||+|++++..            ..+..+++.+.++|+|||++++
T Consensus       143 ~~~~~~~~~~D~~~~~~~~~~~----~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  212 (250)
T 1o9g_A          143 GALPCAIRTADVFDPRALSAVL----AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAV  212 (250)
T ss_dssp             SSCCEEEEECCTTCGGGHHHHH----TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             cccccceeeccccccccccccc----CCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEE
Confidence                  999998775421  00    13479999998631            1234778889999999999997

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.91  E-value=4.4e-10  Score=82.97  Aligned_cols=72  Identities=13%  Similarity=0.185  Sum_probs=54.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-HHHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |.-+..++...++.+|+++|+++.+++.|++|++.+++.++++++++|+.+ ++..+..  ...++||+|+++++
T Consensus        77 G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~~fD~i~~npp  149 (254)
T 2h00_A           77 SCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESEIIYDFCMCNPP  149 (254)
T ss_dssp             TTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCSCCBSEEEECCC
T ss_pred             hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhc--ccCCcccEEEECCC
Confidence            444555666667899999999999999999999999998789999999865 2222210  00157999999864

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.91  E-value=3e-09  Score=83.24  Aligned_cols=91  Identities=12%  Similarity=0.132  Sum_probs=70.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------   75 (157)
                      |..+..++.. +..+|+++|++ .+++.|+++++.+++.++++++.+|+.++.  +      .++||+|+++.-      
T Consensus        75 G~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~~~D~Iv~~~~~~~l~~  144 (376)
T 3r0q_C           75 GILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS--L------PEKVDVIISEWMGYFLLR  144 (376)
T ss_dssp             THHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC--C------SSCEEEEEECCCBTTBTT
T ss_pred             CHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC--c------CCcceEEEEcChhhcccc
Confidence            4444444444 45599999999 999999999999999888999999998752  1      368999999651      


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ......++..+.++|+|||++++....
T Consensus       145 e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          145 ESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             TCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             hHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            123556788888999999999886543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.91  E-value=2.5e-09  Score=81.72  Aligned_cols=87  Identities=16%  Similarity=0.250  Sum_probs=69.7

Q ss_pred             cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..+..++...+ +++|+++|+++++++.|+++++..|+. +++++.+|+.+..+.       .++||+|+++.......
T Consensus        87 G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~~-------~~~fD~Iv~~~~~~~~~  158 (317)
T 1dl5_A           87 GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPE-------FSPYDVIFVTVGVDEVP  158 (317)
T ss_dssp             SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GCCEEEEEECSBBSCCC
T ss_pred             hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhcccc-------CCCeEEEEEcCCHHHHH
Confidence            555556666555 589999999999999999999999986 599999999875431       46799999997654433


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                         +.+.+.|+|||++++.
T Consensus       159 ---~~~~~~LkpgG~lvi~  174 (317)
T 1dl5_A          159 ---ETWFTQLKEGGRVIVP  174 (317)
T ss_dssp             ---HHHHHHEEEEEEEEEE
T ss_pred             ---HHHHHhcCCCcEEEEE
Confidence               5677899999999985

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.90  E-value=3.3e-09  Score=78.39  Aligned_cols=89  Identities=13%  Similarity=0.267  Sum_probs=70.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..|..++...  .+|+++|+++.+++.|+++++..++. +++++.+|+.+. + +     ++++||+|++...   .+.
T Consensus        49 G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l-~-~-----~~~~fD~V~~~~~l~~~~d  118 (260)
T 1vl5_A           49 GHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-F-----TDERFHIVTCRIAAHHFPN  118 (260)
T ss_dssp             CHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-S-----CTTCEEEEEEESCGGGCSC
T ss_pred             CHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhC-C-C-----CCCCEEEEEEhhhhHhcCC
Confidence            55555566553  49999999999999999999988875 799999999763 2 2     2578999998753   234


Q ss_pred             cHHHHHHHHhcccCCeEEEEec
Q 031568           79 YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ....++.+.+.|+|||.+++.+
T Consensus       119 ~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          119 PASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEEE
Confidence            5788999999999999998853

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.90  E-value=4e-09  Score=82.76  Aligned_cols=87  Identities=10%  Similarity=0.043  Sum_probs=70.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |.-+..++..  +.+|+++|+++.+++.|++|++.+++.  ++++.+|+.+...       +.++||+|++++...    
T Consensus       245 G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~~-------~~~~fD~Ii~npp~~~~~~  313 (381)
T 3dmg_A          245 GALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEALT-------EEARFDIIVTNPPFHVGGA  313 (381)
T ss_dssp             STTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTSC-------TTCCEEEEEECCCCCTTCS
T ss_pred             CHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhccc-------cCCCeEEEEECCchhhccc
Confidence            5555566654  679999999999999999999998874  8999999987642       136899999986432    


Q ss_pred             ----ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 ----NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 ----~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                          ....+++.+.+.|+|||.+++.
T Consensus       314 ~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          314 VILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             SCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence                2457888899999999999884

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.90  E-value=5.3e-08  Score=69.37  Aligned_cols=83  Identities=17%  Similarity=0.117  Sum_probs=62.0

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---cHHHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---YCNYHE   84 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---~~~~~~   84 (157)
                      ++...|+++++++|+|+.+++++++|++.+|...++++  +|..+..+        .++||+|+.-.-.+-   -...+.
T Consensus        67 l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~--------~~~~DvVLa~k~LHlL~~~~~al~  136 (200)
T 3fzg_A           67 QWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY--------KGTYDVVFLLKMLPVLKQQDVNIL  136 (200)
T ss_dssp             HHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT--------TSEEEEEEEETCHHHHHHTTCCHH
T ss_pred             HHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC--------CCCcChhhHhhHHHhhhhhHHHHH
Confidence            44456899999999999999999999999998767777  56654422        678999997542111   112234


Q ss_pred             HHHhcccCCeEEEEec
Q 031568           85 RLMKLLKVGGIAVYDN  100 (157)
Q Consensus        85 ~~~~~L~~gG~iv~~~  100 (157)
                      .+.+.|+|||++|.-.
T Consensus       137 ~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          137 DFLQLFHTQNFVISFP  152 (200)
T ss_dssp             HHHHTCEEEEEEEEEE
T ss_pred             HHHHHhCCCCEEEEeC
Confidence            6789999999999754

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.90  E-value=2.6e-09  Score=78.07  Aligned_cols=86  Identities=21%  Similarity=0.269  Sum_probs=67.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..++...+ .+|+++|+++.+++.|+++++..++. +++++.+|+...++.       ..+||+|+++....... 
T Consensus       103 G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~~fD~Ii~~~~~~~~~-  172 (235)
T 1jg1_A          103 GWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPP-------KAPYDVIIVTAGAPKIP-  172 (235)
T ss_dssp             SHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GCCEEEEEECSBBSSCC-
T ss_pred             CHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCC-------CCCccEEEECCcHHHHH-
Confidence            566666777655 89999999999999999999999886 599999998432221       24599999987654433 


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                        +.+.+.|+|||++++.
T Consensus       173 --~~~~~~L~pgG~lvi~  188 (235)
T 1jg1_A          173 --EPLIEQLKIGGKLIIP  188 (235)
T ss_dssp             --HHHHHTEEEEEEEEEE
T ss_pred             --HHHHHhcCCCcEEEEE
Confidence              4678899999999885

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.89  E-value=4.8e-09  Score=81.28  Aligned_cols=90  Identities=14%  Similarity=0.168  Sum_probs=70.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------   75 (157)
                      |..+..++.. +..+|+++|+++ +++.|+++++..++.++++++.+|+.+. + +     +.++||+|+++..      
T Consensus        78 G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD~Iis~~~~~~l~~  148 (349)
T 3q7e_A           78 GILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV-E-L-----PVEKVDIIISEWMGYCLFY  148 (349)
T ss_dssp             SHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC-C-C-----SSSCEEEEEECCCBBTBTB
T ss_pred             hHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc-c-C-----CCCceEEEEEccccccccC
Confidence            4444445544 677999999995 9999999999999988899999999875 1 2     2478999998641      


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEec
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ......+++.+.++|+|||+++.+.
T Consensus       149 ~~~~~~~l~~~~r~LkpgG~li~~~  173 (349)
T 3q7e_A          149 ESMLNTVLHARDKWLAPDGLIFPDR  173 (349)
T ss_dssp             TCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             chhHHHHHHHHHHhCCCCCEEcccc
Confidence            2345677888889999999998643

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.88  E-value=8.1e-09  Score=72.85  Aligned_cols=87  Identities=10%  Similarity=0.065  Sum_probs=68.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~   76 (157)
                      |..+..++..  +.+++++|+++.+++.++++++..++. +++++.+|+.+..        ..++||+|++...     .
T Consensus        44 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--------~~~~~D~v~~~~~l~~~~~  112 (199)
T 2xvm_A           44 GRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLT--------FDRQYDFILSTVVLMFLEA  112 (199)
T ss_dssp             SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCC--------CCCCEEEEEEESCGGGSCG
T ss_pred             CHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCC--------CCCCceEEEEcchhhhCCH
Confidence            4444445544  679999999999999999999988874 6999999997641        1468999998753     2


Q ss_pred             cccHHHHHHHHhcccCCeEEEEe
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      .....+++.+.+.|+|||.+++-
T Consensus       113 ~~~~~~l~~~~~~L~~gG~l~~~  135 (199)
T 2xvm_A          113 KTIPGLIANMQRCTKPGGYNLIV  135 (199)
T ss_dssp             GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEE
Confidence            24577899999999999997653

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.88  E-value=4.7e-09  Score=81.60  Aligned_cols=94  Identities=14%  Similarity=0.111  Sum_probs=74.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH-HHHhhcCCCCCceeEEEEcCCC----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENEGSFDYAFVDADK----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l-~~~~~~~~~~~~fD~I~iD~~~----   76 (157)
                      |..+..++..+|+.+++++|+ |.+++.|+++++..++.++++++.+|+.+.- + +      .++||+|++....    
T Consensus       191 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~------p~~~D~v~~~~vlh~~~  262 (363)
T 3dp7_A          191 GKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP-F------PTGFDAVWMSQFLDCFS  262 (363)
T ss_dssp             CHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC-C------CCCCSEEEEESCSTTSC
T ss_pred             CHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC-C------CCCcCEEEEechhhhCC
Confidence            556667778889999999999 9999999999998888789999999997630 0 1      3579999985432    


Q ss_pred             -cccHHHHHHHHhcccCCeEEEEecccC
Q 031568           77 -DNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        77 -~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                       +....+++.+.+.|+|||.+++.+..+
T Consensus       263 ~~~~~~~l~~~~~~L~pgG~l~i~e~~~  290 (363)
T 3dp7_A          263 EEEVISILTRVAQSIGKDSKVYIMETLW  290 (363)
T ss_dssp             HHHHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEeecc
Confidence             123467889999999999998765544

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.87  E-value=3e-09  Score=83.32  Aligned_cols=96  Identities=11%  Similarity=0.175  Sum_probs=74.1

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHc-----C-CC-CcEEEEEccHHHHHH----HHhhcCCCCCceeE
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKA-----G-VD-HKINFIESEALSVLD----QLLKYSENEGSFDY   69 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~-----~-~~-~~i~~~~~d~~~~l~----~~~~~~~~~~~fD~   69 (157)
                      |..+..++... ++++|+++|+++.+++.|+++++..     | .. ++++++.+|+.+...    .+     +.++||+
T Consensus        95 G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~-----~~~~fD~  169 (383)
T 4fsd_A           95 GRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV-----PDSSVDI  169 (383)
T ss_dssp             SHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC-----CTTCEEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC-----CCCCEEE
Confidence            55566666654 7889999999999999999998765     4 32 589999999986421    11     2568999


Q ss_pred             EEEcCC---CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           70 AFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        70 I~iD~~---~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      |++...   .+....+++.+.++|+|||++++.+..
T Consensus       170 V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  205 (383)
T 4fsd_A          170 VISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVY  205 (383)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEec
Confidence            998763   234678899999999999999986544

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.87  E-value=7.1e-09  Score=75.53  Aligned_cols=89  Identities=15%  Similarity=0.029  Sum_probs=68.4

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l--~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |..+..++... |+++|+++|+++.+++.+.++++..   .+++++.+|+.+..  +..      .++||+|++|.....
T Consensus        89 G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~------~~~~D~V~~~~~~~~  159 (233)
T 2ipx_A           89 GTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRML------IAMVDVIFADVAQPD  159 (233)
T ss_dssp             SHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGG------CCCEEEEEECCCCTT
T ss_pred             CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhccc------CCcEEEEEEcCCCcc
Confidence            55566677654 6789999999999988888888775   47999999998642  211      468999999876332


Q ss_pred             c-HHHHHHHHhcccCCeEEEEe
Q 031568           79 Y-CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ~-~~~~~~~~~~L~~gG~iv~~   99 (157)
                      . ..++..+.+.|+|||++++.
T Consensus       160 ~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          160 QTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCeEEEEE
Confidence            2 34577789999999999984

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.86  E-value=5.8e-09  Score=79.94  Aligned_cols=92  Identities=11%  Similarity=0.044  Sum_probs=74.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..++..+|+.+++++|+ |.+++.|++++...++.++++++.+|+.+.+         ..+||+|++-...     
T Consensus       181 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------p~~~D~v~~~~vlh~~~~  250 (332)
T 3i53_A          181 GGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL---------PAGAGGYVLSAVLHDWDD  250 (332)
T ss_dssp             SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------CCSCSEEEEESCGGGSCH
T ss_pred             hHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC---------CCCCcEEEEehhhccCCH
Confidence            556667777889999999999 9999999999999998889999999997421         2379999985422     


Q ss_pred             cccHHHHHHHHhcccCCeEEEEecccC
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      +....+++.+.+.|+|||.+++.+...
T Consensus       251 ~~~~~~l~~~~~~L~pgG~l~i~e~~~  277 (332)
T 3i53_A          251 LSAVAILRRCAEAAGSGGVVLVIEAVA  277 (332)
T ss_dssp             HHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence            123678999999999999998866544

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.86  E-value=1.4e-08  Score=86.03  Aligned_cols=138  Identities=9%  Similarity=0.146  Sum_probs=91.3

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHc------CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKA------GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~------~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |..+..|+... +..+|+++|+++.+++.|+++++..      +. .+++++++|+.+.-.       ..++||+|++..
T Consensus       733 G~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~-------~d~sFDlVV~~e  804 (950)
T 3htx_A          733 GSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDS-------RLHDVDIGTCLE  804 (950)
T ss_dssp             SHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCT-------TSCSCCEEEEES
T ss_pred             CHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCc-------ccCCeeEEEEeC
Confidence            55555566554 4589999999999999999977643      44 489999999987421       247899999865


Q ss_pred             CCcc-----cHHHHHHHHhcccCCeEEEEeccc------CCcc-----ccCCCC------CCC-CCcccchHHHHHHHHH
Q 031568           75 DKDN-----YCNYHERLMKLLKVGGIAVYDNTL------WGGT-----VAVPEE------QVP-DHFRGSSRQAILDLNR  131 (157)
Q Consensus        75 ~~~~-----~~~~~~~~~~~L~~gG~iv~~~~~------~~~~-----~~~~~~------~~~-~~~~~~~~~~~~~~~~  131 (157)
                      ....     ...+++.+.+.|+|| ++++....      +.+.     ...|..      ..+ ..++- ..+.++.|.+
T Consensus       805 VLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEW-TReEFr~Wae  882 (950)
T 3htx_A          805 VIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEW-TREQFNQWAS  882 (950)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSCSCCB-CHHHHHHHHH
T ss_pred             chhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCcceee-cHHHHHHHHH
Confidence            4322     234788899999999 55553221      1111     000000      001 11111 3456788888


Q ss_pred             HhhcCCCeeEEeeecCCe
Q 031568          132 SLADDPRVQLSHVALGDG  149 (157)
Q Consensus       132 ~l~~~~~~~~~~~p~~~G  149 (157)
                      .+..+.+|.+.+.++|+|
T Consensus       883 ~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          883 KLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             HHHHHTTEEEEEEEESSC
T ss_pred             HHHHhcCcEEEEEccCCC
Confidence            888888999999999988

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.86  E-value=1.1e-08  Score=81.36  Aligned_cols=96  Identities=11%  Similarity=0.074  Sum_probs=72.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHH-------HHHHHHcCCC-CcEEEEEccHHHH---HHHHhhcCCCCCceeEE
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIG-------LPIIKKAGVD-HKINFIESEALSV---LDQLLKYSENEGSFDYA   70 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a-------~~~~~~~~~~-~~i~~~~~d~~~~---l~~~~~~~~~~~~fD~I   70 (157)
                      |..++.++...+..+|++||+++.+++.|       +++++..|+. ++++++++|....   ++..      .++||+|
T Consensus       254 G~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~------~~~FDvI  327 (433)
T 1u2z_A          254 GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL------IPQCDVI  327 (433)
T ss_dssp             SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH------GGGCSEE
T ss_pred             CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc------cCCCCEE
Confidence            55566666655677999999999999999       9999988854 5899999865421   2221      3579999


Q ss_pred             EEcCC--CcccHHHHHHHHhcccCCeEEEEecccC
Q 031568           71 FVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        71 ~iD~~--~~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ++...  .+.....++.+.+.|+|||.+++.+.+.
T Consensus       328 vvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~  362 (433)
T 1u2z_A          328 LVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR  362 (433)
T ss_dssp             EECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             EEeCccccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence            98632  2345667888999999999999976543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.85  E-value=1e-08  Score=79.04  Aligned_cols=95  Identities=14%  Similarity=0.098  Sum_probs=75.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++..+|+.+++++|+ +.+++.|++++...++.++++++.+|+.+..+..      .++||+|++.....    
T Consensus       191 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~D~v~~~~vlh~~~~  263 (352)
T 3mcz_A          191 GTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------GGAADVVMLNDCLHYFDA  263 (352)
T ss_dssp             CHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT------TCCEEEEEEESCGGGSCH
T ss_pred             CHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC------CCCccEEEEecccccCCH
Confidence            555666777889999999999 9999999999999998889999999998642111      45699999854321    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEecccC
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                       ....+++.+.+.|+|||.+++.+...
T Consensus       264 ~~~~~~l~~~~~~L~pgG~l~i~e~~~  290 (352)
T 3mcz_A          264 REAREVIGHAAGLVKPGGALLILTMTM  290 (352)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence             23578899999999999998865544

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.85  E-value=8.2e-09  Score=79.71  Aligned_cols=87  Identities=17%  Similarity=0.205  Sum_probs=70.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |.-+..++...|..+|+++|+++.+++.|+++++..++.  ++++.+|+.+..         .++||+|++++...    
T Consensus       208 G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~---------~~~fD~Iv~~~~~~~g~~  276 (343)
T 2pjd_A          208 GVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV---------KGRFDMIISNPPFHDGMQ  276 (343)
T ss_dssp             SHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC---------CSCEEEEEECCCCCSSSH
T ss_pred             CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc---------cCCeeEEEECCCcccCcc
Confidence            555566777778889999999999999999999998874  677899987632         46899999987532    


Q ss_pred             ----ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 ----NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 ----~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                          ....+++.+.+.|+|||.+++-
T Consensus       277 ~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          277 TSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             HHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence                2356788899999999999874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.84  E-value=2.1e-09  Score=78.12  Aligned_cols=88  Identities=15%  Similarity=0.141  Sum_probs=68.1

Q ss_pred             cccHHHHHhhCC------CcEEEEEeCChhHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHhhcCCCCCceeEEE
Q 031568            2 HLPTKLFMTGNK------ILQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENEGSFDYAF   71 (157)
Q Consensus         2 g~st~~l~~~~~------~~~v~~ve~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~   71 (157)
                      |..|..++...+      .++|+++|+++++++.|+++++..+.    .++++++.+|+.+.++.       .++||+|+
T Consensus        96 G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~fD~I~  168 (227)
T 1r18_A           96 GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-------NAPYNAIH  168 (227)
T ss_dssp             SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-------GCSEEEEE
T ss_pred             cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-------CCCccEEE
Confidence            556666666433      37999999999999999999988762    24799999999873321       36799999


Q ss_pred             EcCCCcccHHHHHHHHhcccCCeEEEEe
Q 031568           72 VDADKDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        72 iD~~~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ++......   .+.+.+.|+|||++++.
T Consensus       169 ~~~~~~~~---~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          169 VGAAAPDT---PTELINQLASGGRLIVP  193 (227)
T ss_dssp             ECSCBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             ECCchHHH---HHHHHHHhcCCCEEEEE
Confidence            98865443   36778999999999985

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.84  E-value=2e-08  Score=79.32  Aligned_cols=93  Identities=10%  Similarity=-0.012  Sum_probs=67.4

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHH-------HcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIK-------KAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-   75 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~-------~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-   75 (157)
                      +..++...+..+|++||+++.++++|+++++       .+|+. ++|++++||+.+.--...     -..||+||++.. 
T Consensus       188 ~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~-----~~~aDVVf~Nn~~  262 (438)
T 3uwp_A          188 VLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER-----IANTSVIFVNNFA  262 (438)
T ss_dssp             HHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHH-----HHTCSEEEECCTT
T ss_pred             HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccc-----cCCccEEEEcccc
Confidence            3444545566689999999999999998753       45663 689999999987421100     146999998753 


Q ss_pred             -CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           76 -KDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        76 -~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                       .+.....+.++.+.|+|||.||+-..+
T Consensus       263 F~pdl~~aL~Ei~RvLKPGGrIVssE~f  290 (438)
T 3uwp_A          263 FGPEVDHQLKERFANMKEGGRIVSSKPF  290 (438)
T ss_dssp             CCHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred             cCchHHHHHHHHHHcCCCCcEEEEeecc
Confidence             234456677888999999999986544

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.84  E-value=1.1e-08  Score=79.76  Aligned_cols=92  Identities=9%  Similarity=0.072  Sum_probs=74.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++..+|+.+++++|+ |.+++.|++++...++.++++++.+|+.+.+         ..+||+|++.....    
T Consensus       214 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---------p~~~D~v~~~~vlh~~~d  283 (369)
T 3gwz_A          214 GSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI---------PDGADVYLIKHVLHDWDD  283 (369)
T ss_dssp             SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC---------CSSCSEEEEESCGGGSCH
T ss_pred             cHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC---------CCCceEEEhhhhhccCCH
Confidence            556667777889999999999 9999999999999998889999999997321         23799999854321    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEecccC
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                       ....+++.+.+.|+|||.+++.+...
T Consensus       284 ~~~~~~L~~~~~~L~pgG~l~i~e~~~  310 (369)
T 3gwz_A          284 DDVVRILRRIATAMKPDSRLLVIDNLI  310 (369)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence             22368999999999999998866544

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.84  E-value=8.6e-09  Score=75.39  Aligned_cols=90  Identities=17%  Similarity=0.241  Sum_probs=70.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++..  ..+++++|+++.+++.++++++..++. +++++.+|+.+. + +     +.++||+|++...   ...
T Consensus        33 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~  102 (239)
T 1xxl_A           33 GHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P-F-----PDDSFDIITCRYAAHHFSD  102 (239)
T ss_dssp             SHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C-S-----CTTCEEEEEEESCGGGCSC
T ss_pred             CHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccC-C-C-----CCCcEEEEEECCchhhccC
Confidence            4445555554  359999999999999999999988875 799999998753 2 1     2468999998753   234


Q ss_pred             cHHHHHHHHhcccCCeEEEEecc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ....++.+.+.|+|||.+++.+.
T Consensus       103 ~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A          103 VRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEc
Confidence            57889999999999999988543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.84  E-value=5.4e-09  Score=75.36  Aligned_cols=89  Identities=15%  Similarity=0.197  Sum_probs=68.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--Cc--
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KD--   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~--   77 (157)
                      |..+..++...+  +++++|+++.+++.|+++++..+  .+++++.+|+.+. + +     +.++||+|++...  ..  
T Consensus        50 G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-~-~-----~~~~~D~v~~~~~~~~~~~  118 (227)
T 1ve3_A           50 GGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKL-S-F-----EDKTFDYVIFIDSIVHFEP  118 (227)
T ss_dssp             SHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSC-C-S-----CTTCEEEEEEESCGGGCCH
T ss_pred             CHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcC-C-C-----CCCcEEEEEEcCchHhCCH
Confidence            444555555544  99999999999999999998876  4799999998763 1 1     2468999998754  22  


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                       ....+++.+.+.|+|||.+++...
T Consensus       119 ~~~~~~l~~~~~~L~~gG~l~~~~~  143 (227)
T 1ve3_A          119 LELNQVFKEVRRVLKPSGKFIMYFT  143 (227)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEec
Confidence             345678889999999999987544

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.83  E-value=8.2e-09  Score=79.73  Aligned_cols=89  Identities=15%  Similarity=0.125  Sum_probs=68.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------   75 (157)
                      |.-+..++.. +..+|+++|+++ +++.|+++++.+++.++++++.+|+.+. + +     +.++||+|+++.-      
T Consensus        76 G~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~~~~~D~Ivs~~~~~~l~~  146 (340)
T 2fyt_A           76 GILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV-H-L-----PVEKVDVIISEWMGYFLLF  146 (340)
T ss_dssp             SHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-C-C-----SCSCEEEEEECCCBTTBTT
T ss_pred             cHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh-c-C-----CCCcEEEEEEcCchhhccC
Confidence            4434444443 556999999997 9999999999999978999999999864 1 1     2468999998751      


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEe
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ......++..+.++|+|||+++.+
T Consensus       147 ~~~~~~~l~~~~~~LkpgG~lip~  170 (340)
T 2fyt_A          147 ESMLDSVLYAKNKYLAKGGSVYPD  170 (340)
T ss_dssp             TCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             HHHHHHHHHHHHhhcCCCcEEEcc
Confidence            123456788888999999999843

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.83  E-value=8.8e-09  Score=75.68  Aligned_cols=91  Identities=11%  Similarity=0.014  Sum_probs=69.7

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-c
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-Y   79 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-~   79 (157)
                      |..|..++.. .|.++|+++|+++++++.+++++++.   .++..+.+|+.+.....    ...+.+|+||.|...+. .
T Consensus        89 G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~----~~~~~vDvVf~d~~~~~~~  161 (233)
T 4df3_A           89 GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYR----HLVEGVDGLYADVAQPEQA  161 (233)
T ss_dssp             SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGT----TTCCCEEEEEECCCCTTHH
T ss_pred             CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccc----cccceEEEEEEeccCChhH
Confidence            6677777773 58999999999999999999887654   37889999886532111    12568999999875443 3


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ...+..+.+.|||||.+++.
T Consensus       162 ~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          162 AIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHhccCCCEEEEE
Confidence            46788889999999999874

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.82  E-value=1.6e-08  Score=74.14  Aligned_cols=87  Identities=18%  Similarity=0.329  Sum_probs=67.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..++..  +.+|+++|+++.+++.|++++...+.  +++++.+|+.+..        ..++||+|++....     
T Consensus        53 G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~--------~~~~fD~v~~~~~~~~~~~  120 (252)
T 1wzn_A           53 GIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA--------FKNEFDAVTMFFSTIMYFD  120 (252)
T ss_dssp             CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC--------CCSCEEEEEECSSGGGGSC
T ss_pred             CHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc--------cCCCccEEEEcCCchhcCC
Confidence            4344445543  67999999999999999999988775  6999999998741        14679999975321     


Q ss_pred             -cccHHHHHHHHhcccCCeEEEEec
Q 031568           77 -DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 -~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                       .....+++.+.+.|+|||+++++.
T Consensus       121 ~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          121 EEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEEec
Confidence             234567888899999999999863

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.81  E-value=1.1e-08  Score=76.67  Aligned_cols=92  Identities=10%  Similarity=0.044  Sum_probs=71.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..++.. +..+++++|+++.+++.|++++...+...+++++.+|+.+. + +.    ..++||+|++....     
T Consensus        76 G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~----~~~~fD~v~~~~~l~~~~~  148 (298)
T 1ri5_A           76 GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-H-MD----LGKEFDVISSQFSFHYAFS  148 (298)
T ss_dssp             TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-C-CC----CSSCEEEEEEESCGGGGGS
T ss_pred             CHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-c-cC----CCCCcCEEEECchhhhhcC
Confidence            4444455544 56699999999999999999999888877899999999764 1 10    15689999987542     


Q ss_pred             --cccHHHHHHHHhcccCCeEEEEec
Q 031568           77 --DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 --~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                        .....+++.+.++|+|||.+++..
T Consensus       149 ~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          149 TSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence              234568888999999999999754

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.80  E-value=5.2e-09  Score=76.52  Aligned_cols=87  Identities=14%  Similarity=0.213  Sum_probs=66.0

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----cc
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----NY   79 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----~~   79 (157)
                      +..++... ..+|+++|+++.+++.|++++...+ ..+++++.+|+.+...       ..++||+|+++....     .+
T Consensus        94 ~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~-------~~~~fD~v~~~~~l~~~~~~~~  164 (241)
T 2ex4_A           94 TKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTP-------EPDSYDVIWIQWVIGHLTDQHL  164 (241)
T ss_dssp             HHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCC-------CSSCEEEEEEESCGGGSCHHHH
T ss_pred             HHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCC-------CCCCEEEEEEcchhhhCCHHHH
Confidence            33344443 6799999999999999999988765 3479999999876421       245899999885422     24


Q ss_pred             HHHHHHHHhcccCCeEEEEec
Q 031568           80 CNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ..+++.+.++|+|||++++.+
T Consensus       165 ~~~l~~~~~~LkpgG~l~i~~  185 (241)
T 2ex4_A          165 AEFLRRCKGSLRPNGIIVIKD  185 (241)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCeEEEEEE
Confidence            478899999999999998844

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.80  E-value=5.9e-09  Score=76.67  Aligned_cols=85  Identities=19%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~   78 (157)
                      |..+..++...|+.+++++|+++.+++.++++      .++++++.+|+.+..  .      .++||+|++....   +.
T Consensus        45 G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~--~------~~~fD~v~~~~~l~~~~~  110 (259)
T 2p35_A           45 GNSTELLTDRYGVNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK--P------AQKADLLYANAVFQWVPD  110 (259)
T ss_dssp             THHHHHHHHHHCTTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC--C------SSCEEEEEEESCGGGSTT
T ss_pred             CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC--c------cCCcCEEEEeCchhhCCC
Confidence            55566677776889999999999999999987      247899999997642  1      5689999987632   34


Q ss_pred             cHHHHHHHHhcccCCeEEEEec
Q 031568           79 YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ....++.+.+.|+|||.+++..
T Consensus       111 ~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          111 HLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCeEEEEEe
Confidence            5778999999999999999854

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.80  E-value=1.4e-08  Score=78.56  Aligned_cols=80  Identities=15%  Similarity=0.124  Sum_probs=65.1

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----CcccHHHHHH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHER   85 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~~~~~~~~~~   85 (157)
                      ..+..+|+++|+++ +++.|+++++.+++.++++++.+|+.+.-  +      .++||+|++...     .......+..
T Consensus        70 ~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~------~~~~D~Ivs~~~~~~~~~~~~~~~l~~  140 (348)
T 2y1w_A           70 QAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L------PEQVDIIISEPMGYMLFNERMLESYLH  140 (348)
T ss_dssp             HTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C------SSCEEEEEECCCBTTBTTTSHHHHHHH
T ss_pred             hCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC--C------CCceeEEEEeCchhcCChHHHHHHHHH
Confidence            34667999999996 88999999999999889999999997641  1      468999999753     2345677888


Q ss_pred             HHhcccCCeEEEEe
Q 031568           86 LMKLLKVGGIAVYD   99 (157)
Q Consensus        86 ~~~~L~~gG~iv~~   99 (157)
                      +.++|+|||+++..
T Consensus       141 ~~~~LkpgG~li~~  154 (348)
T 2y1w_A          141 AKKYLKPSGNMFPT  154 (348)
T ss_dssp             GGGGEEEEEEEESC
T ss_pred             HHhhcCCCeEEEEe
Confidence            88999999999854

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.80  E-value=3.5e-09  Score=79.92  Aligned_cols=91  Identities=12%  Similarity=0.157  Sum_probs=70.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----   74 (157)
                      |..+..++..  +.+|+++|+++.+++.|++++...+..  .+++++.+|+.+. +       ..++||+|++..     
T Consensus        94 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~-------~~~~fD~v~~~~~~~~~  163 (299)
T 3g2m_A           94 GRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-A-------LDKRFGTVVISSGSINE  163 (299)
T ss_dssp             TTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-C-------CSCCEEEEEECHHHHTT
T ss_pred             CHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-C-------cCCCcCEEEECCccccc
Confidence            5555556654  679999999999999999999887642  5899999999874 2       156899998642     


Q ss_pred             -CCcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           75 -DKDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        75 -~~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                       .......+++.+.+.|+|||.+++....
T Consensus       164 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  192 (299)
T 3g2m_A          164 LDEADRRGLYASVREHLEPGGKFLLSLAM  192 (299)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence             1113467889999999999999996543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.80  E-value=1.2e-08  Score=79.98  Aligned_cols=85  Identities=13%  Similarity=0.239  Sum_probs=67.0

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------CcccHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------KDNYCN   81 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------~~~~~~   81 (157)
                      +|++....+|++||.++ +++.|+++++.+|+.++|+++.+++.++  .+      +++||+|+...-      ......
T Consensus       100 ~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~--~l------pe~~DvivsE~~~~~l~~e~~l~~  170 (376)
T 4hc4_A          100 FCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV--EL------PEQVDAIVSEWMGYGLLHESMLSS  170 (376)
T ss_dssp             HHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SSCEEEEECCCCBTTBTTTCSHHH
T ss_pred             HHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee--cC------CccccEEEeecccccccccchhhh
Confidence            45555567999999996 8899999999999999999999999875  12      568999997431      123556


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 031568           82 YHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ++....++|+|||+++.+.+
T Consensus       171 ~l~a~~r~Lkp~G~~iP~~a  190 (376)
T 4hc4_A          171 VLHARTKWLKEGGLLLPASA  190 (376)
T ss_dssp             HHHHHHHHEEEEEEEESCEE
T ss_pred             HHHHHHhhCCCCceECCccc
Confidence            67777799999999986543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.79  E-value=1.6e-08  Score=77.74  Aligned_cols=89  Identities=13%  Similarity=0.144  Sum_probs=68.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------   75 (157)
                      |.-+..++. .+..+|+++|++ .+++.|+++++.+++.++++++.+|+.+..  +     +.++||+|+++..      
T Consensus        50 G~ls~~la~-~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-----~~~~~D~Ivs~~~~~~l~~  120 (328)
T 1g6q_1           50 GILSMFAAK-HGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--L-----PFPKVDIIISEWMGYFLLY  120 (328)
T ss_dssp             SHHHHHHHH-TCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--C-----SSSCEEEEEECCCBTTBST
T ss_pred             HHHHHHHHH-CCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--C-----CCCcccEEEEeCchhhccc
Confidence            433433443 356799999999 599999999999999889999999998741  1     2468999998742      


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEe
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ......++..+.++|+|||+++.+
T Consensus       121 ~~~~~~~l~~~~~~LkpgG~li~~  144 (328)
T 1g6q_1          121 ESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             TCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEe
Confidence            223456788888999999999854

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.79  E-value=4.8e-09  Score=75.19  Aligned_cols=88  Identities=9%  Similarity=0.020  Sum_probs=62.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC-----------CCCcEEEEEccHHHHHHHHhhcCCCCCceeEE
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG-----------VDHKINFIESEALSVLDQLLKYSENEGSFDYA   70 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-----------~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I   70 (157)
                      |.-+..|+..  +.+|+++|+++.+++.|+++.....           ...+++++++|+.+.-..-      .++||+|
T Consensus        34 G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~------~~~fD~v  105 (203)
T 1pjz_A           34 SQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD------IGHCAAF  105 (203)
T ss_dssp             SHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH------HHSEEEE
T ss_pred             cHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc------CCCEEEE
Confidence            5556666665  6799999999999999998764310           1247999999998753210      1579999


Q ss_pred             EEcCCC-----cccHHHHHHHHhcccCCeEEE
Q 031568           71 FVDADK-----DNYCNYHERLMKLLKVGGIAV   97 (157)
Q Consensus        71 ~iD~~~-----~~~~~~~~~~~~~L~~gG~iv   97 (157)
                      +.....     .....+++.+.++|+|||.++
T Consensus       106 ~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~  137 (203)
T 1pjz_A          106 YDRAAMIALPADMRERYVQHLEALMPQACSGL  137 (203)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred             EECcchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            964421     123457889999999999833

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.78  E-value=1.1e-08  Score=74.34  Aligned_cols=75  Identities=17%  Similarity=0.279  Sum_probs=61.1

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-------CcccHHHHHHHH
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-------KDNYCNYHERLM   87 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-------~~~~~~~~~~~~   87 (157)
                      .+++++|+++.+++.|++++...+  .+++++.+|+.+..        ..++||+|++..+       .......++.+.
T Consensus        55 ~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--------~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~  124 (243)
T 3d2l_A           55 YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELE--------LPEPVDAITILCDSLNYLQTEADVKQTFDSAA  124 (243)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCC--------CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHH
T ss_pred             CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcC--------CCCCcCEEEEeCCchhhcCCHHHHHHHHHHHH
Confidence            899999999999999999998876  37999999987641        1468999998641       123456788889


Q ss_pred             hcccCCeEEEEe
Q 031568           88 KLLKVGGIAVYD   99 (157)
Q Consensus        88 ~~L~~gG~iv~~   99 (157)
                      ++|+|||.++++
T Consensus       125 ~~L~pgG~l~~~  136 (243)
T 3d2l_A          125 RLLTDGGKLLFD  136 (243)
T ss_dssp             HHEEEEEEEEEE
T ss_pred             HhcCCCeEEEEE
Confidence            999999999984

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.78  E-value=1.2e-08  Score=74.01  Aligned_cols=84  Identities=18%  Similarity=0.224  Sum_probs=65.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..|..++...  .+|+++|+++.+++.|++++...+   +++++.+|+.+.++.       .++||+|+++....... 
T Consensus        82 G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~-------~~~fD~v~~~~~~~~~~-  148 (231)
T 1vbf_A           82 GYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEE-------EKPYDRVVVWATAPTLL-  148 (231)
T ss_dssp             SHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGG-------GCCEEEEEESSBBSSCC-
T ss_pred             CHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccccccc-------CCCccEEEECCcHHHHH-
Confidence            55566666653  899999999999999999998766   799999999873321       46899999987544433 


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                        +.+.+.|+|||++++..
T Consensus       149 --~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          149 --CKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             --HHHHHTEEEEEEEEEEE
T ss_pred             --HHHHHHcCCCcEEEEEE
Confidence              46788999999998853

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.77  E-value=6.2e-09  Score=74.69  Aligned_cols=86  Identities=19%  Similarity=0.207  Sum_probs=66.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..++..  +.+|+++|+++.+++.|++++...+   +++++.+|+.+..        ..++||+|++....     
T Consensus        63 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~--------~~~~fD~v~~~~~l~~~~~  129 (216)
T 3ofk_A           63 GAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS--------TAELFDLIVVAEVLYYLED  129 (216)
T ss_dssp             SHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC--------CSCCEEEEEEESCGGGSSS
T ss_pred             CHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC--------CCCCccEEEEccHHHhCCC
Confidence            4444445544  4699999999999999999887643   7999999998753        15789999987432     


Q ss_pred             -cccHHHHHHHHhcccCCeEEEEec
Q 031568           77 -DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 -~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                       .....+++.+.++|+|||.+++..
T Consensus       130 ~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          130 MTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence             122466889999999999999854

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.77  E-value=1.9e-08  Score=78.06  Aligned_cols=90  Identities=12%  Similarity=0.054  Sum_probs=71.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++...|+.+++++|+ +.+++.|++++...++.++++++.+|+.+.+         ...||+|++.....    
T Consensus       194 G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D~v~~~~vl~~~~~  263 (374)
T 1qzz_A          194 GGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL---------PVTADVVLLSFVLLNWSD  263 (374)
T ss_dssp             SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SCCEEEEEEESCGGGSCH
T ss_pred             CHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---------CCCCCEEEEeccccCCCH
Confidence            555666777788999999999 9999999999999998889999999997632         23499999865322    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                       ....+++.+.+.|+|||.+++.+.
T Consensus       264 ~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          264 EDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEec
Confidence             123688999999999998876544

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.77  E-value=1.9e-08  Score=73.08  Aligned_cols=86  Identities=17%  Similarity=0.244  Sum_probs=67.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-CC----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-DK----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~~----   76 (157)
                      |..+..++..  +.+++++|+++.+++.|++++...+.  +++++.+|+.+..  +      .++||+|++.. ..    
T Consensus        49 G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~------~~~fD~v~~~~~~l~~~~  116 (246)
T 1y8c_A           49 GNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN--I------NRKFDLITCCLDSTNYII  116 (246)
T ss_dssp             STTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC--C------SCCEEEEEECTTGGGGCC
T ss_pred             CHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCC--c------cCCceEEEEcCccccccC
Confidence            4445555554  67999999999999999999988775  7999999997641  1      36899999975 21    


Q ss_pred             --cccHHHHHHHHhcccCCeEEEEe
Q 031568           77 --DNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        77 --~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                        .....+++.+.+.|+|||.++++
T Consensus       117 ~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          117 DSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             SHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence              34567788899999999999984

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.76  E-value=3e-08  Score=78.96  Aligned_cols=91  Identities=12%  Similarity=0.115  Sum_probs=69.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.-+..++..  ..+|+++|+++++++.|++|++.+++. +++++.+|+.+.++.+..   ..++||+|++|++.....+
T Consensus       298 G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~~~~~---~~~~fD~Vv~dPPr~g~~~  371 (433)
T 1uwv_A          298 GNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPW---AKNGFDKVLLDPARAGAAG  371 (433)
T ss_dssp             TTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGG---GTTCCSEEEECCCTTCCHH
T ss_pred             CHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhhhhhh---hcCCCCEEEECCCCccHHH
Confidence            4445555544  789999999999999999999999986 899999999885432100   1457999999998766666


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+. .++|++++.+.
T Consensus       372 ~~~~l~-~~~p~~ivyvs  388 (433)
T 1uwv_A          372 VMQQII-KLEPIRIVYVS  388 (433)
T ss_dssp             HHHHHH-HHCCSEEEEEE
T ss_pred             HHHHHH-hcCCCeEEEEE
Confidence            665554 47888887663

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.76  E-value=9.5e-09  Score=78.71  Aligned_cols=92  Identities=8%  Similarity=0.006  Sum_probs=73.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++..+|+.+++++|+ +.+++.|++++...++.++++++.+|+.+.   +      .++||+|++.....    
T Consensus       179 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~~~D~v~~~~vl~~~~~  248 (334)
T 2ip2_A          179 GELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---V------PSNGDIYLLSRIIGDLDE  248 (334)
T ss_dssp             CHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C------CSSCSEEEEESCGGGCCH
T ss_pred             hHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C------CCCCCEEEEchhccCCCH
Confidence            555666777889999999999 999999999998888777999999999762   2      35799999865322    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEecccC
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                       ....+++.+.+.|+|||.+++.+...
T Consensus       249 ~~~~~~l~~~~~~L~pgG~l~i~e~~~  275 (334)
T 2ip2_A          249 AASLRLLGNCREAMAGDGRVVVIERTI  275 (334)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence             22378899999999999988865543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.76  E-value=1.1e-08  Score=82.43  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=64.8

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----CcccHHHHHH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHER   85 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~~~~~~~~~~   85 (157)
                      ..+..+|+++|+++ +++.|+++++.+|+.++++++.+|+.+. + +      .++||+|+++..     .......+..
T Consensus       178 ~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~-~------~~~fD~Ivs~~~~~~~~~e~~~~~l~~  248 (480)
T 3b3j_A          178 QAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV-S-L------PEQVDIIISEPMGYMLFNERMLESYLH  248 (480)
T ss_dssp             HTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC-C-C------SSCEEEEECCCCHHHHTCHHHHHHHHH
T ss_pred             HcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC-c-c------CCCeEEEEEeCchHhcCcHHHHHHHHH
Confidence            45778999999998 9999999999999988999999999864 1 1      358999999753     1234556667


Q ss_pred             HHhcccCCeEEEEe
Q 031568           86 LMKLLKVGGIAVYD   99 (157)
Q Consensus        86 ~~~~L~~gG~iv~~   99 (157)
                      +.++|+|||+++..
T Consensus       249 ~~~~LkpgG~li~~  262 (480)
T 3b3j_A          249 AKKYLKPSGNMFPT  262 (480)
T ss_dssp             GGGGEEEEEEEESC
T ss_pred             HHHhcCCCCEEEEE
Confidence            78999999999853

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.76  E-value=3e-08  Score=75.79  Aligned_cols=92  Identities=15%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..++..+|+.+++++|++ .+++.|++++...++.++++++.+|+.+.  .+      .+.||+|++....     
T Consensus       177 G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~------~~~~D~v~~~~~l~~~~~  247 (335)
T 2r3s_A          177 GLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY------GNDYDLVLLPNFLHHFDV  247 (335)
T ss_dssp             CHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC------CSCEEEEEEESCGGGSCH
T ss_pred             CHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC------CCCCcEEEEcchhccCCH
Confidence            4455667777889999999999 99999999999999887899999999763  11      3459999985432     


Q ss_pred             cccHHHHHHHHhcccCCeEEEEeccc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      +....+++.+.+.|+|||.+++-+..
T Consensus       248 ~~~~~~l~~~~~~L~pgG~l~i~e~~  273 (335)
T 2r3s_A          248 ATCEQLLRKIKTALAVEGKVIVFDFI  273 (335)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEEeec
Confidence            23357889999999999977765443

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.75  E-value=8.4e-08  Score=71.92  Aligned_cols=97  Identities=8%  Similarity=-0.007  Sum_probs=69.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH---H--hhcCCCCCceeEEEEcCCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ---L--LKYSENEGSFDYAFVDADK   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~---~--~~~~~~~~~fD~I~iD~~~   76 (157)
                      |..+..++...|+.+|+++|++|.+++.|++++..   .++++++.+|+.+.-.-   .  ... .+.++||+|++....
T Consensus        92 G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~-~d~~~~d~v~~~~vl  167 (274)
T 2qe6_A           92 QNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM-IDFSRPAAIMLVGML  167 (274)
T ss_dssp             SCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH-CCTTSCCEEEETTTG
T ss_pred             ChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc-CCCCCCEEEEEechh
Confidence            54444455567899999999999999999998843   35899999999753110   0  000 012579999986521


Q ss_pred             -----cccHHHHHHHHhcccCCeEEEEeccc
Q 031568           77 -----DNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        77 -----~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                           .....+++.+.+.|+|||.+++.+..
T Consensus       168 h~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          168 HYLSPDVVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             GGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             hhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence                 13577899999999999999987654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.75  E-value=2.7e-08  Score=76.93  Aligned_cols=91  Identities=12%  Similarity=0.126  Sum_probs=72.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++...|+.+++++|+ +.+++.|+++++..++.++++++.+|+.+.+         ...||+|++.....    
T Consensus       195 G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D~v~~~~vl~~~~~  264 (360)
T 1tw3_A          195 GGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---------PRKADAIILSFVLLNWPD  264 (360)
T ss_dssp             SHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SSCEEEEEEESCGGGSCH
T ss_pred             cHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC---------CCCccEEEEcccccCCCH
Confidence            555666777888999999999 9999999999999998889999999997632         23599999865322    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEeccc
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                       ....+++.+.+.|+|||.+++.+..
T Consensus       265 ~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          265 HDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence             1246889999999999988875443

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.75  E-value=2.1e-08  Score=73.79  Aligned_cols=87  Identities=18%  Similarity=0.214  Sum_probs=67.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~   78 (157)
                      |..|..++..  +.+|+++|+++.+++.|++++ . +...+++++.+|+.+. + +     +.++||+|++....   +.
T Consensus        51 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~  119 (263)
T 2yqz_A           51 GRIALPLIAR--GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAI-P-L-----PDESVHGVIVVHLWHLVPD  119 (263)
T ss_dssp             STTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSC-C-S-----CTTCEEEEEEESCGGGCTT
T ss_pred             CHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccC-C-C-----CCCCeeEEEECCchhhcCC
Confidence            5556666654  689999999999999999988 3 3335899999999753 2 1     25689999987532   24


Q ss_pred             cHHHHHHHHhcccCCeEEEEe
Q 031568           79 YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ....++.+.+.|+|||.+++.
T Consensus       120 ~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          120 WPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHCCCCcEEEEE
Confidence            577899999999999999885

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.74  E-value=1.8e-08  Score=71.80  Aligned_cols=90  Identities=12%  Similarity=0.239  Sum_probs=68.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..++.+++. ++.+++++|+++.+++.|+++++..+  .+++++.+|+.+. + +     +.++||+|++....     
T Consensus        35 G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~  104 (209)
T 2p8j_A           35 DLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKL-P-F-----KDESMSFVYSYGTIFHMRK  104 (209)
T ss_dssp             SSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSC-C-S-----CTTCEEEEEECSCGGGSCH
T ss_pred             CHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhC-C-C-----CCCceeEEEEcChHHhCCH
Confidence            3333334333 57899999999999999999998776  3689999999763 2 1     24689999986432     


Q ss_pred             cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .....+++.+.+.|+|||.+++...
T Consensus       105 ~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A          105 NDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            3456778889999999999998654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.74  E-value=2.2e-08  Score=74.25  Aligned_cols=89  Identities=12%  Similarity=0.123  Sum_probs=63.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH----------c------CCCCcEEEEEccHHHHHHHHhhcCCCCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK----------A------GVDHKINFIESEALSVLDQLLKYSENEG   65 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~----------~------~~~~~i~~~~~d~~~~l~~~~~~~~~~~   65 (157)
                      |.-+.+|+..  +.+|++||+++.+++.|++....          .      ....+++++++|+.+.-..      ..+
T Consensus        80 G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~------~~~  151 (252)
T 2gb4_A           80 AIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRA------NIG  151 (252)
T ss_dssp             CTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGG------CCC
T ss_pred             cHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcc------cCC
Confidence            5555566654  67999999999999999875531          0      0125799999999875321      126


Q ss_pred             ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 031568           66 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        66 ~fD~I~iD~~-----~~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      +||+|+....     ......+++.+.++|+|||++++
T Consensus       152 ~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l  189 (252)
T 2gb4_A          152 KFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLV  189 (252)
T ss_dssp             CEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             CEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            8999996432     12345689999999999999864

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.74  E-value=2e-08  Score=79.86  Aligned_cols=84  Identities=19%  Similarity=0.156  Sum_probs=65.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.-++.++..  +.+|+++|+++++++.|++|++.+++.  ++++.+|+.+.+         ..+||+|++|++......
T Consensus       302 G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~---------~~~fD~Vv~dPPr~g~~~  368 (425)
T 2jjq_A          302 GTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVS---------VKGFDTVIVDPPRAGLHP  368 (425)
T ss_dssp             THHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCC---------CTTCSEEEECCCTTCSCH
T ss_pred             hHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcC---------ccCCCEEEEcCCccchHH
Confidence            4344445443  679999999999999999999999885  999999998753         237999999997654443


Q ss_pred             -HHHHHHhcccCCeEEEEe
Q 031568           82 -YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 -~~~~~~~~L~~gG~iv~~   99 (157)
                       .++.+ ..|+|+|++++.
T Consensus       369 ~~~~~l-~~l~p~givyvs  386 (425)
T 2jjq_A          369 RLVKRL-NREKPGVIVYVS  386 (425)
T ss_dssp             HHHHHH-HHHCCSEEEEEE
T ss_pred             HHHHHH-HhcCCCcEEEEE
Confidence             55554 469999998874

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.74  E-value=1.1e-08  Score=74.43  Aligned_cols=85  Identities=16%  Similarity=0.119  Sum_probs=65.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~   78 (157)
                      |..+..++..  +.+|+++|+++.+++.|++++..     +++++.+|+.+..        .+++||+|++....   +.
T Consensus        54 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~--------~~~~fD~v~~~~~l~~~~~  118 (250)
T 2p7i_A           54 GDFTSRLQEH--FNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ--------LPRRYDNIVLTHVLEHIDD  118 (250)
T ss_dssp             SHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC--------CSSCEEEEEEESCGGGCSS
T ss_pred             CHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC--------cCCcccEEEEhhHHHhhcC
Confidence            4444445544  44899999999999999987643     7999999998762        25789999986532   34


Q ss_pred             cHHHHHHHH-hcccCCeEEEEecc
Q 031568           79 YCNYHERLM-KLLKVGGIAVYDNT  101 (157)
Q Consensus        79 ~~~~~~~~~-~~L~~gG~iv~~~~  101 (157)
                      ...+++.+. +.|+|||.+++...
T Consensus       119 ~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          119 PVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEcC
Confidence            578899999 99999999998643

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.74  E-value=2.8e-08  Score=70.48  Aligned_cols=90  Identities=14%  Similarity=0.143  Sum_probs=68.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~   78 (157)
                      |..+..++..  +.+++++|+++.+++.|++++...+.  +++++.+|+.+. + +     +.++||+|++....   ..
T Consensus        41 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~~~~~~~  109 (202)
T 2kw5_A           41 GRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADF-D-I-----VADAWEGIVSIFCHLPSSL  109 (202)
T ss_dssp             THHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTB-S-C-----CTTTCSEEEEECCCCCHHH
T ss_pred             CHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhc-C-C-----CcCCccEEEEEhhcCCHHH
Confidence            3334444433  67999999999999999999988776  799999998764 1 1     24689999985422   23


Q ss_pred             cHHHHHHHHhcccCCeEEEEeccc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ...+++.+.+.|+|||.+++....
T Consensus       110 ~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A          110 RQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             HHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEec
Confidence            467788999999999999986543

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.74  E-value=8.7e-09  Score=75.17  Aligned_cols=90  Identities=13%  Similarity=0.062  Sum_probs=68.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCC-hhHHHHH---HHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568            2 HLPTKLFMTGNKILQITAIDVN-RETYEIG---LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~-~~~~~~a---~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      |..+..++...++.+|+++|++ +.+++.|   ++++++.++. +++++.+|+.+. +...     .+.+|.|++.....
T Consensus        36 G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l-~~~~-----~d~v~~i~~~~~~~  108 (225)
T 3p2e_A           36 GRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESL-PFEL-----KNIADSISILFPWG  108 (225)
T ss_dssp             SHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBC-CGGG-----TTCEEEEEEESCCH
T ss_pred             cHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHh-hhhc-----cCeEEEEEEeCCCc
Confidence            5556666666789999999999 6666666   8888888875 799999999875 3211     35688888765322


Q ss_pred             --------ccHHHHHHHHhcccCCeEEEE
Q 031568           78 --------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 --------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                              .+...++.+.++|+|||.+++
T Consensus       109 ~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          109 TLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             HHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence                    235678999999999999988

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.74  E-value=1.2e-08  Score=73.77  Aligned_cols=91  Identities=20%  Similarity=0.278  Sum_probs=68.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC----CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD----HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~----~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      |..+..++..  +.+|+++|+++.+++.|++++...++.    ++++++.+|+.+. + +     ..++||+|++.....
T Consensus        42 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~v~~~~~l~  112 (235)
T 3sm3_A           42 GKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-S-F-----HDSSFDFAVMQAFLT  112 (235)
T ss_dssp             SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-C-S-----CTTCEEEEEEESCGG
T ss_pred             CHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-C-C-----CCCceeEEEEcchhh
Confidence            4444445544  779999999999999999999887762    4689999998764 2 1     257899999875322


Q ss_pred             ---c---cHHHHHHHHhcccCCeEEEEecc
Q 031568           78 ---N---YCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 ---~---~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                         .   ...+++.+.+.|+|||.+++...
T Consensus       113 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          113 SVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             GCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence               2   22789999999999999988643

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.73  E-value=2.7e-08  Score=77.75  Aligned_cols=76  Identities=24%  Similarity=0.244  Sum_probs=60.0

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----------
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----------   77 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----------   77 (157)
                      ++...+.++|+++|+++.+++.|++|++.+|+.++++++++|+.+...       +.++||+|++|++..          
T Consensus       235 ~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~-------~~~~fD~Ii~npPyg~r~~~~~~~~  307 (373)
T 3tm4_A          235 LALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ-------YVDSVDFAISNLPYGLKIGKKSMIP  307 (373)
T ss_dssp             HHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG-------TCSCEEEEEEECCCC------CCHH
T ss_pred             HHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc-------ccCCcCEEEECCCCCcccCcchhHH
Confidence            444445569999999999999999999999997799999999988531       246899999997521          


Q ss_pred             -ccHHHHHHHHhcc
Q 031568           78 -NYCNYHERLMKLL   90 (157)
Q Consensus        78 -~~~~~~~~~~~~L   90 (157)
                       -|..+++.+.+.|
T Consensus       308 ~ly~~~~~~l~r~l  321 (373)
T 3tm4_A          308 DLYMKFFNELAKVL  321 (373)
T ss_dssp             HHHHHHHHHHHHHE
T ss_pred             HHHHHHHHHHHHHc
Confidence             1456677777877

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.73  E-value=7.6e-08  Score=74.50  Aligned_cols=90  Identities=9%  Similarity=0.004  Sum_probs=72.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++..+|+.+++++|+ +.+++.|+++++..++.++++++.+|+.+. +        ...+|+|++.....    
T Consensus       202 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------~~~~D~v~~~~vlh~~~d  271 (359)
T 1x19_A          202 GDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--------YPEADAVLFCRILYSANE  271 (359)
T ss_dssp             CHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-C--------CCCCSEEEEESCGGGSCH
T ss_pred             cHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-C--------CCCCCEEEEechhccCCH
Confidence            555667777889999999999 999999999999998887899999999864 1        23359999865322    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                       ....+++.+.+.|+|||.+++-+.
T Consensus       272 ~~~~~~l~~~~~~L~pgG~l~i~e~  296 (359)
T 1x19_A          272 QLSTIMCKKAFDAMRSGGRLLILDM  296 (359)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEec
Confidence             246678999999999999966443

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.72  E-value=2.1e-08  Score=73.68  Aligned_cols=86  Identities=6%  Similarity=0.107  Sum_probs=66.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++... ..+|+++|+++.+++.|++++.    ..+++++.+|+.+. + +     +.++||+|++...   ...
T Consensus        56 G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~  123 (253)
T 3g5l_A           56 GWHCIYAAEHG-AKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDI-A-I-----EPDAYNVVLSSLALHYIAS  123 (253)
T ss_dssp             CHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGC-C-C-----CTTCEEEEEEESCGGGCSC
T ss_pred             CHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhC-C-C-----CCCCeEEEEEchhhhhhhh
Confidence            44455555543 3399999999999999998775    35899999999763 2 1     2578999998753   235


Q ss_pred             cHHHHHHHHhcccCCeEEEEe
Q 031568           79 YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ...+++.+.+.|+|||.+++.
T Consensus       124 ~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          124 FDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEE
Confidence            678899999999999999985

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.71  E-value=9.8e-09  Score=75.61  Aligned_cols=90  Identities=16%  Similarity=0.170  Sum_probs=70.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..++... +.+|+++|+++.+++.|++++...   ++++++.+|+.+. + +     +.++||+|++....     
T Consensus        67 G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~  135 (266)
T 3ujc_A           67 GGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK-E-F-----PENNFDLIYSRDAILALSL  135 (266)
T ss_dssp             SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC-C-C-----CTTCEEEEEEESCGGGSCH
T ss_pred             CHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC-C-C-----CCCcEEEEeHHHHHHhcCh
Confidence            44455566654 789999999999999999977654   5899999999764 2 1     25789999987532     


Q ss_pred             cccHHHHHHHHhcccCCeEEEEeccc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      .....+++.+.++|+|||.+++.+..
T Consensus       136 ~~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          136 ENKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            34567889999999999999987653

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.70  E-value=3.4e-08  Score=72.06  Aligned_cols=84  Identities=13%  Similarity=0.142  Sum_probs=65.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~   76 (157)
                      |..+..++..  +.+|+++|+++.+++.|+++         ++++.+|+.+.+..+     +.++||+|++...     .
T Consensus        53 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~-----~~~~fD~i~~~~~l~~~~~  116 (240)
T 3dli_A           53 GEFLELCKEE--GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL-----PDKYLDGVMISHFVEHLDP  116 (240)
T ss_dssp             THHHHHHHHH--TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS-----CTTCBSEEEEESCGGGSCG
T ss_pred             CHHHHHHHhC--CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc-----CCCCeeEEEECCchhhCCc
Confidence            4344445444  66899999999999999875         788999999876443     2578999998653     2


Q ss_pred             cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +....+++.+.+.|+|||.+++...
T Consensus       117 ~~~~~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A          117 ERLFELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             GGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            2457889999999999999998654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.69  E-value=5.1e-08  Score=69.19  Aligned_cols=85  Identities=9%  Similarity=-0.048  Sum_probs=65.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~   76 (157)
                      |..+..++..  +.+++++|+++.+++.|+++.      .+++++.+|+.+. + +     +.++||+|++...     .
T Consensus        53 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~  117 (203)
T 3h2b_A           53 GRWTGHLASL--GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDL-S-D-----SPKRWAGLLAWYSLIHMGP  117 (203)
T ss_dssp             CHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGG-G-G-----SCCCEEEEEEESSSTTCCT
T ss_pred             CHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCccccc-c-c-----CCCCeEEEEehhhHhcCCH
Confidence            4444445544  669999999999999999872      3789999999874 2 2     2578999998652     2


Q ss_pred             cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .....+++.+.+.|+|||.+++...
T Consensus       118 ~~~~~~l~~~~~~L~pgG~l~i~~~  142 (203)
T 3h2b_A          118 GELPDALVALRMAVEDGGGLLMSFF  142 (203)
T ss_dssp             TTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            3567889999999999999998654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.68  E-value=9.9e-08  Score=71.48  Aligned_cols=93  Identities=13%  Similarity=0.166  Sum_probs=68.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC---CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-C--
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-D--   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~--   75 (157)
                      |..+..++..  +.+|+++|+++.+++.|++++...+..   .++.+..+|+.+....+.    ..++||+|++.+ .  
T Consensus        69 G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~fD~V~~~g~~l~  142 (293)
T 3thr_A           69 GVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP----AGDGFDAVICLGNSFA  142 (293)
T ss_dssp             SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC----CTTCEEEEEECTTCGG
T ss_pred             CHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccc----cCCCeEEEEEcChHHh
Confidence            4444455554  569999999999999999988654432   468899999987642221    257899999862 1  


Q ss_pred             -Ccc-------cHHHHHHHHhcccCCeEEEEec
Q 031568           76 -KDN-------YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        76 -~~~-------~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                       ...       ...+++.+.++|+|||++++..
T Consensus       143 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          143 HLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             GSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence             222       6778999999999999999753

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.68  E-value=3.6e-08  Score=70.42  Aligned_cols=85  Identities=14%  Similarity=0.195  Sum_probs=65.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      |..+..++..  +.+++++|+++.+++.|++    .+. .+++++.+|+.+..        ..++||+|++......   
T Consensus        58 G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~--------~~~~~D~v~~~~~l~~~~~  122 (218)
T 3ou2_A           58 GYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWT--------PDRQWDAVFFAHWLAHVPD  122 (218)
T ss_dssp             SHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCC--------CSSCEEEEEEESCGGGSCH
T ss_pred             CHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCC--------CCCceeEEEEechhhcCCH
Confidence            4445555555  6799999999999999988    444 47999999998751        2678999998753221   


Q ss_pred             --cHHHHHHHHhcccCCeEEEEecc
Q 031568           79 --YCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        79 --~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                        ...+++.+.+.|+|||.+++...
T Consensus       123 ~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          123 DRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence              36788999999999999988654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.67  E-value=1.4e-07  Score=71.65  Aligned_cols=85  Identities=18%  Similarity=0.253  Sum_probs=60.7

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCC-----cEEEEEccH----H-HHHHHHhhcCCCCCceeEEEEcCC------C
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEA----L-SVLDQLLKYSENEGSFDYAFVDAD------K   76 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-----~i~~~~~d~----~-~~l~~~~~~~~~~~~fD~I~iD~~------~   76 (157)
                      ...+|+++|+++.+++.|++.....+...     +++++.+|+    . +.++...    +.++||+|++-..      .
T Consensus        70 ~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~----~~~~FD~V~~~~~lhy~~~~  145 (302)
T 2vdw_A           70 EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF----YFGKFNIIDWQFAIHYSFHP  145 (302)
T ss_dssp             TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC----CSSCEEEEEEESCGGGTCST
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc----cCCCeeEEEECchHHHhCCH
Confidence            46799999999999999999887765421     267777776    1 2222111    2468999986432      1


Q ss_pred             cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ......++.+.++|+|||++++...
T Consensus       146 ~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          146 RHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             TTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            2346789999999999999998544

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.66  E-value=1.1e-08  Score=74.34  Aligned_cols=79  Identities=13%  Similarity=0.032  Sum_probs=61.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCC-CCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN-EGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~-~~~fD~I~iD~~~~~~~   80 (157)
                      |..+..++..  +.+|+++|+++.+++.|+++      .++++++.+|+.+.++.      . .++||+|++..   ...
T Consensus        60 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~------~~~~~fD~v~~~~---~~~  122 (226)
T 3m33_A           60 GPDAARFGPQ--AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPA------GLGAPFGLIVSRR---GPT  122 (226)
T ss_dssp             SHHHHHHGGG--SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCT------TCCCCEEEEEEES---CCS
T ss_pred             CHHHHHHHHc--CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCC------cCCCCEEEEEeCC---CHH
Confidence            4445555555  67999999999999999998      24799999999654431      2 46899999974   345


Q ss_pred             HHHHHHHhcccCCeEEE
Q 031568           81 NYHERLMKLLKVGGIAV   97 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv   97 (157)
                      ..++.+.++|+|||.++
T Consensus       123 ~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          123 SVILRLPELAAPDAHFL  139 (226)
T ss_dssp             GGGGGHHHHEEEEEEEE
T ss_pred             HHHHHHHHHcCCCcEEE
Confidence            57788899999999999

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.66  E-value=2.9e-08  Score=74.13  Aligned_cols=84  Identities=15%  Similarity=0.069  Sum_probs=65.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~   78 (157)
                      |..+..++.  ++.+|+++|+++.+++.+++++      ++++++.+|+.+. +       ..++||+|++....   ..
T Consensus        69 G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-------~~~~fD~v~~~~~l~~~~d  132 (279)
T 3ccf_A           69 GQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNF-R-------VDKPLDAVFSNAMLHWVKE  132 (279)
T ss_dssp             SHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTC-C-------CSSCEEEEEEESCGGGCSC
T ss_pred             CHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhC-C-------cCCCcCEEEEcchhhhCcC
Confidence            445555555  7899999999999999998865      4688999999763 2       14689999987532   34


Q ss_pred             cHHHHHHHHhcccCCeEEEEecc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ....++.+.+.|+|||.+++...
T Consensus       133 ~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          133 PEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEec
Confidence            57789999999999999998543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.66  E-value=4.7e-08  Score=72.54  Aligned_cols=95  Identities=7%  Similarity=-0.032  Sum_probs=68.9

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChh------HHHHHHHHHHHcCCCCcEEEEEcc-HHHH-HHHHhhcCCCCCceeEEEE
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRE------TYEIGLPIIKKAGVDHKINFIESE-ALSV-LDQLLKYSENEGSFDYAFV   72 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~------~~~~a~~~~~~~~~~~~i~~~~~d-~~~~-l~~~~~~~~~~~~fD~I~i   72 (157)
                      |..+..++... |..+|+++|+++.      +++.|+++++..++.++++++.+| .... ++ +     +.++||+|++
T Consensus        55 G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~-----~~~~fD~v~~  128 (275)
T 3bkx_A           55 GDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP-I-----ADQHFDRVVL  128 (275)
T ss_dssp             SHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG-G-----TTCCCSEEEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC-C-----CCCCEEEEEE
Confidence            55556666653 6799999999997      999999999998887789999998 3211 11 1     2578999998


Q ss_pred             cCCC---cccHHHHHHHHhcccCCeEEEEeccc
Q 031568           73 DADK---DNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        73 D~~~---~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ....   +....+++.+..+++|||.+++.+..
T Consensus       129 ~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          129 AHSLWYFASANALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             ESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             ccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            6532   23344566666677779999986544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.65  E-value=1.9e-08  Score=72.25  Aligned_cols=86  Identities=19%  Similarity=0.154  Sum_probs=64.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---c
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~   78 (157)
                      |..+..++..  +.+++++|+++.+++.+++++.     .+++++.+|+.+..        ..++||+|++.....   .
T Consensus        57 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~--------~~~~fD~v~~~~~l~~~~~  121 (220)
T 3hnr_A           57 GNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFE--------VPTSIDTIVSTYAFHHLTD  121 (220)
T ss_dssp             SHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCC--------CCSCCSEEEEESCGGGSCH
T ss_pred             CHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcC--------CCCCeEEEEECcchhcCCh
Confidence            4334444444  7899999999999999998764     47899999998641        137899999976322   2


Q ss_pred             c--HHHHHHHHhcccCCeEEEEeccc
Q 031568           79 Y--CNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        79 ~--~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      .  ..+++.+.+.|+|||.+++.+..
T Consensus       122 ~~~~~~l~~~~~~LkpgG~l~i~~~~  147 (220)
T 3hnr_A          122 DEKNVAIAKYSQLLNKGGKIVFADTI  147 (220)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            2  23789999999999999987543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.64  E-value=1.4e-08  Score=75.68  Aligned_cols=83  Identities=12%  Similarity=0.115  Sum_probs=63.6

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC--cc
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DN   78 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--~~   78 (157)
                      .|..|..|+..  +.+|+++|+++.|++.|++       .++++++++|+.+. + +     ++++||+|++....  -.
T Consensus        50 tG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~-~-~-----~~~sfD~v~~~~~~h~~~  113 (257)
T 4hg2_A           50 SGQASLGLAEF--FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDT-G-L-----PPASVDVAIAAQAMHWFD  113 (257)
T ss_dssp             TTTTHHHHHTT--CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCC-C-C-----CSSCEEEEEECSCCTTCC
T ss_pred             CCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhh-c-c-----cCCcccEEEEeeehhHhh
Confidence            36667667654  5799999999999987754       24799999999764 2 2     36789999986432  23


Q ss_pred             cHHHHHHHHhcccCCeEEEEe
Q 031568           79 YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ....+.++.+.|+|||++++-
T Consensus       114 ~~~~~~e~~rvLkpgG~l~~~  134 (257)
T 4hg2_A          114 LDRFWAELRRVARPGAVFAAV  134 (257)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEE
Confidence            567899999999999999763

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.62  E-value=4.5e-08  Score=71.71  Aligned_cols=89  Identities=11%  Similarity=0.145  Sum_probs=66.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..++... ..+|+++|+++.+++.|++++...   .+++++.+|+.+. + +     +.++||+|++....     
T Consensus       105 G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~  173 (254)
T 1xtp_A          105 GRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA-T-L-----PPNTYDLIVIQWTAIYLTD  173 (254)
T ss_dssp             THHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC-C-C-----CSSCEEEEEEESCGGGSCH
T ss_pred             CHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHC-C-C-----CCCCeEEEEEcchhhhCCH
Confidence            33344444443 678999999999999999987654   5799999999764 2 1     25689999986532     


Q ss_pred             cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .....+++.+.+.|+|||++++...
T Consensus       174 ~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          174 ADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEec
Confidence            2346788899999999999988653

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.61  E-value=4.2e-07  Score=68.22  Aligned_cols=91  Identities=13%  Similarity=0.009  Sum_probs=60.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeC-ChhHHHHHHHHH-----HHcCCC----CcEEEEEccHH----HHHHHHhhcCCCCCce
Q 031568            2 HLPTKLFMTGNKILQITAIDV-NRETYEIGLPII-----KKAGVD----HKINFIESEAL----SVLDQLLKYSENEGSF   67 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~-~~~~~~~a~~~~-----~~~~~~----~~i~~~~~d~~----~~l~~~~~~~~~~~~f   67 (157)
                      |..+..++.. ...+|+++|+ ++.+++.|++|+     +..++.    ++++++..+..    +..+.+.     .++|
T Consensus        91 G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~f  164 (281)
T 3bzb_A           91 GLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTG-----LQRF  164 (281)
T ss_dssp             SHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHS-----CSSB
T ss_pred             cHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhcc-----CCCC
Confidence            4445544443 4459999999 899999999999     555554    47888855432    2222211     4689


Q ss_pred             eEEEE-cCC--CcccHHHHHHHHhccc---C--CeEEEE
Q 031568           68 DYAFV-DAD--KDNYCNYHERLMKLLK---V--GGIAVY   98 (157)
Q Consensus        68 D~I~i-D~~--~~~~~~~~~~~~~~L~---~--gG~iv~   98 (157)
                      |+|++ |..  .+....+++.+.++|+   |  ||.+++
T Consensus       165 D~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          165 QVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             SEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             CEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            99987 542  3346778999999999   9  997655

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.61  E-value=1.5e-07  Score=71.45  Aligned_cols=96  Identities=11%  Similarity=0.068  Sum_probs=69.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC------CCCcEEEEEccHHHHH--HHHhhcCCCCCceeEEEEc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVL--DQLLKYSENEGSFDYAFVD   73 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~~l--~~~~~~~~~~~~fD~I~iD   73 (157)
                      |.-+..++. .+..+++++|+++.+++.|+++....+      ...+++++.+|+.+..  ..+.   .+.++||+|++.
T Consensus        46 G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---~~~~~fD~V~~~  121 (313)
T 3bgv_A           46 GGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR---DPQMCFDICSCQ  121 (313)
T ss_dssp             TTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS---STTCCEEEEEEE
T ss_pred             cHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc---cCCCCEEEEEEe
Confidence            444555554 468899999999999999999987652      2247999999997641  0010   013489999987


Q ss_pred             CCC-------cccHHHHHHHHhcccCCeEEEEecc
Q 031568           74 ADK-------DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        74 ~~~-------~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ...       .....+++.+.+.|+|||++++...
T Consensus       122 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          122 FVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             TCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            543       1235788899999999999998543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.61  E-value=1.5e-07  Score=67.49  Aligned_cols=88  Identities=9%  Similarity=0.074  Sum_probs=64.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--Cccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~   79 (157)
                      |..+..++..  +.+++++|+++.+++.|+++       .+++++.+|+.+......   ...++||+|++...  ....
T Consensus        64 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~---~~~~~fD~v~~~~~l~~~~~  131 (227)
T 3e8s_A           64 GWLLRALADR--GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKV---PVGKDYDLICANFALLHQDI  131 (227)
T ss_dssp             CHHHHHHHTT--TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCS---CCCCCEEEEEEESCCCSSCC
T ss_pred             CHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccc---ccCCCccEEEECchhhhhhH
Confidence            4344444444  77999999999999999986       357789999887632111   12346999998653  3456


Q ss_pred             HHHHHHHHhcccCCeEEEEecc
Q 031568           80 CNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ..+++.+.+.|+|||.+++...
T Consensus       132 ~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          132 IELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             HHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHhCCCeEEEEEec
Confidence            7899999999999999998654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.61  E-value=3.3e-08  Score=70.43  Aligned_cols=88  Identities=11%  Similarity=0.114  Sum_probs=65.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..++...+ .+++++|+++.+++.|++++..   .++++++.+|+.+. + +     +.++||+|++....     
T Consensus        54 G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~-~-~-----~~~~fD~v~~~~~~~~~~~  122 (215)
T 2pxx_A           54 SALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL-D-F-----PSASFDVVLEKGTLDALLA  122 (215)
T ss_dssp             CSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC-C-S-----CSSCEEEEEEESHHHHHTT
T ss_pred             cHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC-C-C-----CCCcccEEEECcchhhhcc
Confidence            444555555433 3999999999999999998764   24799999998764 2 2     24689999975421     


Q ss_pred             -------------cccHHHHHHHHhcccCCeEEEEec
Q 031568           77 -------------DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 -------------~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                                   .....+++.+.++|+|||.+++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  159 (215)
T 2pxx_A          123 GERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT  159 (215)
T ss_dssp             TCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence                         133678888999999999999854

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.61  E-value=1.4e-08  Score=74.86  Aligned_cols=96  Identities=17%  Similarity=0.042  Sum_probs=66.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC----------------------------CCcE-EEEEccHHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV----------------------------DHKI-NFIESEALS   52 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~----------------------------~~~i-~~~~~d~~~   52 (157)
                      |.-+..++...+ .+|+++|+++.+++.|++++...+.                            ..++ +++.+|+.+
T Consensus        68 G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~  146 (265)
T 2i62_A           68 TIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQ  146 (265)
T ss_dssp             CCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTS
T ss_pred             cHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeecc
Confidence            333444444322 5999999999999999998865431                            1137 899999987


Q ss_pred             HHHHHhhcCCCCCceeEEEEcCCCc-------ccHHHHHHHHhcccCCeEEEEecc
Q 031568           53 VLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        53 ~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ..+...   ...++||+|++.....       .+..+++.+.++|+|||.+++...
T Consensus       147 ~~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          147 SQPLGG---VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             SSTTTT---CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCCCCc---cccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence            432110   0126899999865322       456788899999999999998654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.60  E-value=2.8e-08  Score=71.45  Aligned_cols=89  Identities=11%  Similarity=0.024  Sum_probs=64.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHH----HHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPI----IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~----~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      |..+..++...|+.+|+++|+++.+++.+.++    ....++. +++++++|+.+. +.      ..+. |.|++.....
T Consensus        39 G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l-~~------~~~~-d~v~~~~~~~  109 (218)
T 3mq2_A           39 GKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERL-PP------LSGV-GELHVLMPWG  109 (218)
T ss_dssp             CHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTC-CS------CCCE-EEEEEESCCH
T ss_pred             CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhC-CC------CCCC-CEEEEEccch
Confidence            66677788888899999999999988864333    3344553 899999999873 31      1344 7777544211


Q ss_pred             --------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 --------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 --------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                              ....+++.+.+.|+|||.+++.
T Consensus       110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A          110 SLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             HHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence                    2267889999999999999984

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.59  E-value=1.8e-07  Score=64.48  Aligned_cols=84  Identities=12%  Similarity=0.093  Sum_probs=64.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~   78 (157)
                      |..+..++...  .+++++|+++.+++.++++      .++++++.+|    ++ +     +.++||+|++....   +.
T Consensus        29 G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d----~~-~-----~~~~~D~v~~~~~l~~~~~   90 (170)
T 3i9f_A           29 GFYCKYLLEFA--TKLYCIDINVIALKEVKEK------FDSVITLSDP----KE-I-----PDNSVDFILFANSFHDMDD   90 (170)
T ss_dssp             CTTHHHHHTTE--EEEEEECSCHHHHHHHHHH------CTTSEEESSG----GG-S-----CTTCEEEEEEESCSTTCSC
T ss_pred             CHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC----CC-C-----CCCceEEEEEccchhcccC
Confidence            44555565543  4999999999999999998      2479999999    22 1     25789999987532   34


Q ss_pred             cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ...+++.+.+.|+|||.+++.+...
T Consensus        91 ~~~~l~~~~~~L~pgG~l~~~~~~~  115 (170)
T 3i9f_A           91 KQHVISEVKRILKDDGRVIIIDWRK  115 (170)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             HHHHHHHHHHhcCCCCEEEEEEcCc
Confidence            5788999999999999999875543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.59  E-value=7.9e-08  Score=75.97  Aligned_cols=66  Identities=20%  Similarity=0.112  Sum_probs=53.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |..++.++..  +.+|++||+|+.+++.|++|++.+  |+ ++++++++|+.++++...     .++||+||+|++
T Consensus       105 G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~-----~~~fDvV~lDPP  172 (410)
T 3ll7_A          105 GIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK-----TFHPDYIYVDPA  172 (410)
T ss_dssp             SHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH-----HHCCSEEEECCE
T ss_pred             hHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc-----CCCceEEEECCC
Confidence            4445445443  689999999999999999999998  88 589999999998776532     357999999974

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.58  E-value=6.9e-08  Score=68.97  Aligned_cols=83  Identities=11%  Similarity=0.036  Sum_probs=63.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++..  +.+++++|+++.+++.+++++       +++++.+|+.+..        ..++||+|++.....    
T Consensus        55 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--------~~~~fD~v~~~~~l~~~~~  117 (211)
T 3e23_A           55 GYQAEAMLAA--GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--------AIDAYDAVWAHACLLHVPR  117 (211)
T ss_dssp             SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--------CCSCEEEEEECSCGGGSCH
T ss_pred             CHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--------CCCcEEEEEecCchhhcCH
Confidence            4344445444  679999999999999999987       3567888887642        167899999875322    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                       ....+++.+.+.|+|||.+++...
T Consensus       118 ~~~~~~l~~~~~~LkpgG~l~~~~~  142 (211)
T 3e23_A          118 DELADVLKLIWRALKPGGLFYASYK  142 (211)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEc
Confidence             445788999999999999998643

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.57  E-value=6.2e-08  Score=72.15  Aligned_cols=67  Identities=16%  Similarity=0.163  Sum_probs=54.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCCh-------hHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCC--CceeEEEE
Q 031568            2 HLPTKLFMTGNKILQITAIDVNR-------ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE--GSFDYAFV   72 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~-------~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~--~~fD~I~i   72 (157)
                      |.-+..++..  +++|+++|+++       ++++.|++|++.+++.++++++++|+.++++.+.     .  ++||+|++
T Consensus        95 G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~-----~~~~~fD~V~~  167 (258)
T 2r6z_A           95 GRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALV-----KTQGKPDIVYL  167 (258)
T ss_dssp             CHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHH-----HHHCCCSEEEE
T ss_pred             CHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhh-----ccCCCccEEEE
Confidence            4444555553  67999999999       9999999999888876679999999999887653     2  68999999


Q ss_pred             cCC
Q 031568           73 DAD   75 (157)
Q Consensus        73 D~~   75 (157)
                      |+.
T Consensus       168 dP~  170 (258)
T 2r6z_A          168 DPM  170 (258)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            974

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.55  E-value=4.1e-07  Score=64.71  Aligned_cols=83  Identities=5%  Similarity=0.043  Sum_probs=62.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |.-+..++.. +..+|+++|+++.+++.|+++++..++  +++++.+|+.+.          .++||+|++|++.     
T Consensus        61 G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~----------~~~~D~v~~~~p~~~~~~  127 (207)
T 1wy7_A           61 GVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF----------NSRVDIVIMNPPFGSQRK  127 (207)
T ss_dssp             CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC----------CCCCSEEEECCCCSSSST
T ss_pred             CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHc----------CCCCCEEEEcCCCccccC
Confidence            4334444444 456899999999999999999998887  799999999873          3489999999852     


Q ss_pred             cccHHHHHHHHhcccCCeEEEEe
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      .....+++.+.+.+  |++++..
T Consensus       128 ~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          128 HADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             TTTHHHHHHHHHHC--SEEEEEE
T ss_pred             CchHHHHHHHHHhc--CcEEEEE
Confidence            23456788888887  6666543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.55  E-value=9.7e-08  Score=69.38  Aligned_cols=86  Identities=13%  Similarity=0.137  Sum_probs=65.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++..  +.+|+++|+++.+++.++++.    ...+++++.+|+.+. + +     +.++||+|++...   .+.
T Consensus        65 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~  131 (242)
T 3l8d_A           65 GYGTYKLSRT--GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSL-P-F-----ENEQFEAIMAINSLEWTEE  131 (242)
T ss_dssp             SHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBC-S-S-----CTTCEEEEEEESCTTSSSC
T ss_pred             CHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcC-C-C-----CCCCccEEEEcChHhhccC
Confidence            4344445544  779999999999999998864    235799999999864 2 1     2578999998653   234


Q ss_pred             cHHHHHHHHhcccCCeEEEEec
Q 031568           79 YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ...+++.+.+.|+|||.+++..
T Consensus       132 ~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          132 PLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhCCCeEEEEEE
Confidence            5678999999999999999865

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.54  E-value=6.2e-08  Score=71.55  Aligned_cols=73  Identities=8%  Similarity=0.027  Sum_probs=58.7

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-CC------cccHHHHHHH
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-DK------DNYCNYHERL   86 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~~------~~~~~~~~~~   86 (157)
                      +.+|+++|+++.+++.|++++.      +++++.+|+.+..        ..++||+|++.. ..      .....+++.+
T Consensus        72 ~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~--------~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~  137 (263)
T 3pfg_A           72 FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFS--------LGRRFSAVTCMFSSIGHLAGQAELDAALERF  137 (263)
T ss_dssp             SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCC--------CSCCEEEEEECTTGGGGSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCC--------ccCCcCEEEEcCchhhhcCCHHHHHHHHHHH
Confidence            5699999999999999998752      6899999998641        146899999875 21      2344678899


Q ss_pred             HhcccCCeEEEEec
Q 031568           87 MKLLKVGGIAVYDN  100 (157)
Q Consensus        87 ~~~L~~gG~iv~~~  100 (157)
                      .++|+|||.++++.
T Consensus       138 ~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          138 AAHVLPDGVVVVEP  151 (263)
T ss_dssp             HHTEEEEEEEEECC
T ss_pred             HHhcCCCcEEEEEe
Confidence            99999999999974

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.54  E-value=8.1e-07  Score=66.74  Aligned_cols=88  Identities=8%  Similarity=0.077  Sum_probs=62.5

Q ss_pred             hhCCCcEE--EEEeCChhHHHHHHHHHHHc-CCCCcE--EEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHH
Q 031568           10 TGNKILQI--TAIDVNRETYEIGLPIIKKA-GVDHKI--NFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCN   81 (157)
Q Consensus        10 ~~~~~~~v--~~ve~~~~~~~~a~~~~~~~-~~~~~i--~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~   81 (157)
                      ...|+.+|  +++|++++|++.|++.++.. ++. ++  ++..+++.+........ .++++||+|++...   .++...
T Consensus        76 ~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~-~~~~~fD~V~~~~~l~~~~d~~~  153 (292)
T 2aot_A           76 AQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE-NVKFAWHKETSSEYQSRMLEK-KELQKWDFIHMIQMLYYVKDIPA  153 (292)
T ss_dssp             HHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT-TEEEEEECSCHHHHHHHHHTT-TCCCCEEEEEEESCGGGCSCHHH
T ss_pred             hhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC-cceEEEEecchhhhhhhhccc-cCCCceeEEEEeeeeeecCCHHH
Confidence            34577765  99999999999999998764 443 44  55677776553211000 01568999998653   335677


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.++|+|||.+++-
T Consensus       154 ~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          154 TLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             HHHHHHHTEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCcEEEEE
Confidence            899999999999999874

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.51  E-value=4.4e-08  Score=73.00  Aligned_cols=67  Identities=7%  Similarity=0.083  Sum_probs=51.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--------CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG--------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD   73 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--------~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD   73 (157)
                      |..++.++..  +++|++||+++.++++++++++...        +.++++++++|+.++++.+      .++||+||+|
T Consensus       100 G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~------~~~fDvV~lD  171 (258)
T 2oyr_A          100 GRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------TPRPQVVYLD  171 (258)
T ss_dssp             CHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC------SSCCSEEEEC
T ss_pred             CHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC------cccCCEEEEc
Confidence            4445555555  6689999999999999999887542        3257999999999987654      3479999999


Q ss_pred             CCC
Q 031568           74 ADK   76 (157)
Q Consensus        74 ~~~   76 (157)
                      +..
T Consensus       172 P~y  174 (258)
T 2oyr_A          172 PMF  174 (258)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            853

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.51  E-value=1.4e-07  Score=68.50  Aligned_cols=87  Identities=13%  Similarity=0.171  Sum_probs=65.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~   78 (157)
                      |..+..++.. +..+++++|+++.+++.|+++...    .+++++.+|+.+. + +     +.++||+|++....   ..
T Consensus        55 G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~  122 (243)
T 3bkw_A           55 GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKL-H-L-----PQDSFDLAYSSLALHYVED  122 (243)
T ss_dssp             CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGC-C-C-----CTTCEEEEEEESCGGGCSC
T ss_pred             CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhc-c-C-----CCCCceEEEEeccccccch
Confidence            4444445544 334999999999999999987643    3799999999764 2 1     25689999987532   34


Q ss_pred             cHHHHHHHHhcccCCeEEEEec
Q 031568           79 YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ...+++.+.+.|+|||.+++..
T Consensus       123 ~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          123 VARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCcCcEEEEEe
Confidence            5778999999999999999853

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.51  E-value=2.3e-07  Score=67.66  Aligned_cols=89  Identities=15%  Similarity=0.079  Sum_probs=65.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH--HhhcCCCCCceeEEEEcCCC---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ--LLKYSENEGSFDYAFVDADK---   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~--~~~~~~~~~~fD~I~iD~~~---   76 (157)
                      |..+..++...+  +|+++|+++.+++.|++++.    ..+++++.+|+.+....  +..    ...||+|++....   
T Consensus        68 G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~----~~~~d~v~~~~~~~~~  137 (245)
T 3ggd_A           68 GTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHS----EIGDANIYMRTGFHHI  137 (245)
T ss_dssp             SHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHH----HHCSCEEEEESSSTTS
T ss_pred             CHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc----ccCceEEECccccccccccccc----ccCccEEEEcchhhcC
Confidence            555666766644  89999999999999999772    23799999999774321  110    1359999987532   


Q ss_pred             --cccHHHHHHHHhcccCCeEEEEec
Q 031568           77 --DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 --~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                        .....+++.+.+.|+|||.+++-+
T Consensus       138 ~~~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          138 PVEKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             CGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence              245688999999999999866543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.49  E-value=7.6e-08  Score=72.22  Aligned_cols=98  Identities=11%  Similarity=0.004  Sum_probs=64.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc-----------------CCC------------CcEEEEEccHHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA-----------------GVD------------HKINFIESEALS   52 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-----------------~~~------------~~i~~~~~d~~~   52 (157)
                      |. +..+++..++.+|+++|+++.+++.|+++++..                 +..            ..++++.+|+.+
T Consensus        83 G~-~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~  161 (289)
T 2g72_A           83 TV-YQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQ  161 (289)
T ss_dssp             CC-GGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTS
T ss_pred             Ch-HHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCC
Confidence            44 333444445779999999999999999876432                 100            025677788876


Q ss_pred             HHHHHhhcCCCCCceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEecc
Q 031568           53 VLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        53 ~l~~~~~~~~~~~~fD~I~iD~~~-------~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .++.-. ...+.++||+|++....       ..+...++.+.++|+|||.+++...
T Consensus       162 ~~~~~~-~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~  216 (289)
T 2g72_A          162 PQPLGA-GSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  216 (289)
T ss_dssp             SSTTCS-SCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCCccc-cccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            332100 00013569999986532       2456788999999999999998643

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.48  E-value=1.8e-07  Score=67.71  Aligned_cols=84  Identities=7%  Similarity=0.051  Sum_probs=62.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC----C-
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD----K-   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~----~-   76 (157)
                      |..+..++...  .+++++|+++.+++.|++++      ++++++.+|+.+. +       ..++||+|++...    . 
T Consensus        52 G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-------~~~~~D~v~~~~~~~~~~~  115 (239)
T 3bxo_A           52 GTHLEHFTKEF--GDTAGLELSEDMLTHARKRL------PDATLHQGDMRDF-R-------LGRKFSAVVSMFSSVGYLK  115 (239)
T ss_dssp             SHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTC-C-------CSSCEEEEEECTTGGGGCC
T ss_pred             CHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHc-c-------cCCCCcEEEEcCchHhhcC
Confidence            44455555553  39999999999999999864      3689999999763 1       1468999995321    1 


Q ss_pred             --cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 --DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 --~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                        .....+++.+.+.|+|||.++++..
T Consensus       116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A          116 TTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             SHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence              2346788899999999999999753

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.48  E-value=3.8e-07  Score=68.43  Aligned_cols=95  Identities=13%  Similarity=0.095  Sum_probs=65.5

Q ss_pred             HHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee-----EEEEcCCCc--
Q 031568            6 KLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD-----YAFVDADKD--   77 (157)
Q Consensus         6 ~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD-----~I~iD~~~~--   77 (157)
                      ..++. ..|+++|++||.||.|++.||+.+...+ ..+++++++|+.+.-.-+... ...+.||     .|++.+...  
T Consensus        96 ~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~-~~~~~~D~~~p~av~~~avLH~l  173 (277)
T 3giw_A           96 HEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAP-ELRDTLDLTRPVALTVIAIVHFV  173 (277)
T ss_dssp             HHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCH-HHHTTCCTTSCCEEEEESCGGGS
T ss_pred             HHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhccc-ccccccCcCCcchHHhhhhHhcC
Confidence            33443 5799999999999999999999886543 247999999998752111000 0013455     466654221  


Q ss_pred             ----ccHHHHHHHHhcccCCeEEEEeccc
Q 031568           78 ----NYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        78 ----~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                          ....+++.+.+.|+|||++++.+..
T Consensus       174 ~d~~~p~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          174 LDEDDAVGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             CGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             CchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence                1356899999999999999987653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.46  E-value=2.9e-07  Score=64.30  Aligned_cols=84  Identities=11%  Similarity=0.061  Sum_probs=62.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-C----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-K----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-~----   76 (157)
                      |..+..++..  +.+++++|+++.+++.+++++      .+++++.+|+.+. + +     +.++||+|++.+. .    
T Consensus        58 G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~~D~i~~~~~~~~~~~  122 (195)
T 3cgg_A           58 GRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVD-Q-I-----SETDFDLIVSAGNVMGFLA  122 (195)
T ss_dssp             THHHHHHHHT--TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTS-C-C-----CCCCEEEEEECCCCGGGSC
T ss_pred             CHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccC-C-C-----CCCceeEEEECCcHHhhcC
Confidence            3334444444  679999999999999999876      2588999998763 1 1     2468999999742 1    


Q ss_pred             -cccHHHHHHHHhcccCCeEEEEec
Q 031568           77 -DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 -~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                       +....+++.+.+.|+|||.+++..
T Consensus       123 ~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          123 EDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHhCCCCEEEEEe
Confidence             223678888999999999999854

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.45  E-value=6.3e-07  Score=63.49  Aligned_cols=79  Identities=11%  Similarity=0.092  Sum_probs=57.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |.-+..++.. +..+|+++|+++.+++.|++++.      +++++.+|+.+.          .++||+|+++++..    
T Consensus        63 G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~----------~~~~D~v~~~~p~~~~~~  125 (200)
T 1ne2_A           63 GILACGSYLL-GAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI----------SGKYDTWIMNPPFGSVVK  125 (200)
T ss_dssp             CHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC----------CCCEEEEEECCCC-----
T ss_pred             cHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHC----------CCCeeEEEECCCchhccC
Confidence            4444444444 55689999999999999999875      689999999873          35799999997521    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                       ....+++.+.+.+  |+++++.
T Consensus       126 ~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          126 HSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             --CHHHHHHHHHHE--EEEEEEE
T ss_pred             chhHHHHHHHHHhc--CcEEEEE
Confidence             2346788888877  5655554

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.45  E-value=3e-07  Score=63.07  Aligned_cols=83  Identities=16%  Similarity=0.077  Sum_probs=59.6

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-----HHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-----LDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |..+..++.. .++.+++++|+++ +++.           .+++++.+|+.+.     ++...    +.++||+|+++..
T Consensus        34 G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~----~~~~~D~i~~~~~   97 (180)
T 1ej0_A           34 GGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERV----GDSKVQVVMSDMA   97 (180)
T ss_dssp             CHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHH----TTCCEEEEEECCC
T ss_pred             CHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccC----CCCceeEEEECCC
Confidence            4455566665 3679999999999 6532           4799999999764     12111    2468999999864


Q ss_pred             Cc---cc-----------HHHHHHHHhcccCCeEEEEec
Q 031568           76 KD---NY-----------CNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        76 ~~---~~-----------~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ..   ..           ..+++.+.++|+|||.+++..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (180)
T 1ej0_A           98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            32   11           577888899999999999854

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.44  E-value=3.1e-07  Score=68.00  Aligned_cols=82  Identities=15%  Similarity=0.171  Sum_probs=64.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..++...++.+++++|+++.+++.|+++.      .++.++.+|+.+. + +     ..++||+|++....    .
T Consensus        97 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~~----~  159 (269)
T 1p91_A           97 GYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P-F-----SDTSMDAIIRIYAP----C  159 (269)
T ss_dssp             STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S-B-----CTTCEEEEEEESCC----C
T ss_pred             CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhC-C-C-----CCCceeEEEEeCCh----h
Confidence            566777777767889999999999999998864      3678999998653 2 1     24689999976542    2


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.++|+|||.+++..
T Consensus       160 ~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          160 KAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             CHHHHHHHEEEEEEEEEEE
T ss_pred             hHHHHHHhcCCCcEEEEEE
Confidence            4788889999999998753

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.44  E-value=3.1e-07  Score=70.84  Aligned_cols=75  Identities=17%  Similarity=0.209  Sum_probs=61.2

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc----------------
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----------------   78 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~----------------   78 (157)
                      .+++++|+++.+++.|+.|+...|+  +++++++|+.+..        ..++||+|+.+++...                
T Consensus       160 ~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~--------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~  229 (344)
T 2f8l_A          160 VHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL--------LVDPVDVVISDLPVGYYPDDENAKTFELCREE  229 (344)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC--------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSS
T ss_pred             ceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc--------ccCCccEEEECCCCCCcCchhhhhhccccCCC
Confidence            7999999999999999999998887  5889999987632        1468999999976211                


Q ss_pred             -----cHHHHHHHHhcccCCeEEEEe
Q 031568           79 -----YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 -----~~~~~~~~~~~L~~gG~iv~~   99 (157)
                           +..+++.+.+.|+|||++++.
T Consensus       230 g~~~~~~~~l~~~~~~Lk~gG~~~~v  255 (344)
T 2f8l_A          230 GHSFAHFLFIEQGMRYTKPGGYLFFL  255 (344)
T ss_dssp             SCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CcchHHHHHHHHHHHHhCCCCEEEEE
Confidence                 125788899999999998774

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.43  E-value=3.4e-07  Score=72.08  Aligned_cols=76  Identities=14%  Similarity=0.117  Sum_probs=57.6

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccHHHHHHHH
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLM   87 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~~~~~~~~   87 (157)
                      .+|+++|+++.+++.|++|++.+|+.++++++++|+.+...        .++||+|++|++..       ....++..+.
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg  335 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--------EDEYGVVVANPPYGERLEDEEAVRQLYREMG  335 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--------CCCCCEEEECCCCccccCCchhHHHHHHHHH
Confidence            67999999999999999999999998889999999987521        45899999998632       2233444444


Q ss_pred             hcccC--CeEEEE
Q 031568           88 KLLKV--GGIAVY   98 (157)
Q Consensus        88 ~~L~~--gG~iv~   98 (157)
                      +.|++  ||.+.+
T Consensus       336 ~~lk~~~g~~~~i  348 (393)
T 3k0b_A          336 IVYKRMPTWSVYV  348 (393)
T ss_dssp             HHHHTCTTCEEEE
T ss_pred             HHHhcCCCCEEEE
Confidence            44444  665544

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.42  E-value=7.4e-07  Score=66.94  Aligned_cols=80  Identities=14%  Similarity=0.175  Sum_probs=63.4

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---ccHHHHHHHHh-
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---NYCNYHERLMK-   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~~~~~~~~~~~-   88 (157)
                      ++.+++.+|.+++.++..++|++.   .++++++.+|+.+.+..+..   +..+||+||+|++-.   .+...++.+.+ 
T Consensus       112 ~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~---~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~  185 (283)
T 2oo3_A          112 SQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLP---PPEKRGLIFIDPSYERKEEYKEIPYAIKNA  185 (283)
T ss_dssp             TTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCS---CTTSCEEEEECCCCCSTTHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcC---CCCCccEEEECCCCCCCcHHHHHHHHHHHh
Confidence            578999999999999999999975   35899999999998887642   234799999999643   45555555543 


Q ss_pred             -cccCCeEEEE
Q 031568           89 -LLKVGGIAVY   98 (157)
Q Consensus        89 -~L~~gG~iv~   98 (157)
                       .+.++|++++
T Consensus       186 ~~r~~~Gi~v~  196 (283)
T 2oo3_A          186 YSKFSTGLYCV  196 (283)
T ss_dssp             HHHCTTSEEEE
T ss_pred             CccCCCeEEEE
Confidence             6788999886

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.40  E-value=6e-07  Score=70.45  Aligned_cols=76  Identities=8%  Similarity=0.037  Sum_probs=58.5

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccHHHHHHHH
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLM   87 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~~~~~~~~   87 (157)
                      .+|+++|+|+.+++.|++|++.+|+.++++++++|+.+...        .++||+|++|++..       ....++..+.
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg  328 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--------NKINGVLISNPPYGERLLDDKAVDILYNEMG  328 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc--------cCCcCEEEECCchhhccCCHHHHHHHHHHHH
Confidence            67999999999999999999999998889999999987521        35899999998631       2344555555


Q ss_pred             hcccC--CeEEEE
Q 031568           88 KLLKV--GGIAVY   98 (157)
Q Consensus        88 ~~L~~--gG~iv~   98 (157)
                      +.|++  ||.+.+
T Consensus       329 ~~lk~~~g~~~~i  341 (384)
T 3ldg_A          329 ETFAPLKTWSQFI  341 (384)
T ss_dssp             HHHTTCTTSEEEE
T ss_pred             HHHhhCCCcEEEE
Confidence            55554  665543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.40  E-value=2.2e-07  Score=66.30  Aligned_cols=75  Identities=12%  Similarity=0.149  Sum_probs=60.1

Q ss_pred             Cc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHhc
Q 031568           14 IL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKL   89 (157)
Q Consensus        14 ~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~~   89 (157)
                      +. +++++|+++.+++.+++++      .+++++.+|+.+. + +     +.++||+|++...   .+.....++.+.+.
T Consensus        55 ~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~  121 (211)
T 2gs9_A           55 PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEAL-P-F-----PGESFDVVLLFTTLEFVEDVERVLLEARRV  121 (211)
T ss_dssp             CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSC-C-S-----CSSCEEEEEEESCTTTCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccC-C-C-----CCCcEEEEEEcChhhhcCCHHHHHHHHHHH
Confidence            45 9999999999999999876      4788999998763 2 1     2568999998753   23467789999999


Q ss_pred             ccCCeEEEEecc
Q 031568           90 LKVGGIAVYDNT  101 (157)
Q Consensus        90 L~~gG~iv~~~~  101 (157)
                      |+|||.+++...
T Consensus       122 L~pgG~l~i~~~  133 (211)
T 2gs9_A          122 LRPGGALVVGVL  133 (211)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             cCCCCEEEEEec
Confidence            999999998644

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.40  E-value=1.1e-06  Score=66.87  Aligned_cols=72  Identities=14%  Similarity=0.091  Sum_probs=55.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      |--|..++...|+++|+++|+|+.+++.|+++++.+|  ++++++++|+.+....+.+.  ..++||.|++|.+..
T Consensus        38 G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~--g~~~~D~Vl~D~gvS  109 (301)
T 1m6y_A           38 GGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTL--GIEKVDGILMDLGVS  109 (301)
T ss_dssp             SHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHT--TCSCEEEEEEECSCC
T ss_pred             CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhc--CCCCCCEEEEcCccc
Confidence            4456667777778999999999999999999998887  58999999987753222210  015799999998643

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.38  E-value=1.4e-07  Score=70.09  Aligned_cols=85  Identities=21%  Similarity=0.060  Sum_probs=59.5

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCC----------------------------CCcEE-EEEccHHHHHHHHhhcCCCCC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGV----------------------------DHKIN-FIESEALSVLDQLLKYSENEG   65 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~----------------------------~~~i~-~~~~d~~~~l~~~~~~~~~~~   65 (157)
                      .+|+++|+++.+++.|+++++....                            ..+++ ++.+|+.+..+...   ...+
T Consensus        79 ~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~---~~~~  155 (263)
T 2a14_A           79 QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAP---AVLP  155 (263)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTT---CCCC
T ss_pred             cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCc---cccC
Confidence            4799999999999999998865421                            01244 88888876322100   0145


Q ss_pred             ceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           66 SFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        66 ~fD~I~iD~~-------~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      +||+|++...       .+.+...++.+.++|+|||.+++....
T Consensus       156 ~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          156 LADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             CEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             CCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            8999998532       134457788888999999999997543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.35  E-value=6.1e-07  Score=70.41  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=57.7

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccHHHHHHHH
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLM   87 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~~~~~~~~   87 (157)
                      .+|+++|+++.+++.|++|++.+|+.+++++.++|+.+...        .++||+|++|++..       ....++..+.
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg  329 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--------EDEFGFIITNPPYGERLEDKDSVKQLYKELG  329 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--------CCCCcEEEECCCCcCccCCHHHHHHHHHHHH
Confidence            68999999999999999999999998889999999987532        45899999998742       2233455444


Q ss_pred             hcccC--CeEEEE
Q 031568           88 KLLKV--GGIAVY   98 (157)
Q Consensus        88 ~~L~~--gG~iv~   98 (157)
                      +.|++  |+.+.+
T Consensus       330 ~~lk~~~g~~~~i  342 (385)
T 3ldu_A          330 YAFRKLKNWSYYL  342 (385)
T ss_dssp             HHHHTSBSCEEEE
T ss_pred             HHHhhCCCCEEEE
Confidence            44544  555443

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.34  E-value=1.5e-06  Score=67.31  Aligned_cols=90  Identities=18%  Similarity=0.105  Sum_probs=68.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..++.++|+.+++..|. |++++.|+++++..+ .+||+++.+|+.+.         +...+|++++-.-.     
T Consensus       191 G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~---------~~~~~D~~~~~~vlh~~~d  259 (353)
T 4a6d_A          191 GALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKD---------PLPEADLYILARVLHDWAD  259 (353)
T ss_dssp             SHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTS---------CCCCCSEEEEESSGGGSCH
T ss_pred             CHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccC---------CCCCceEEEeeeecccCCH
Confidence            555666888999999999997 899999999887555 57999999998752         13468999985422     


Q ss_pred             cccHHHHHHHHhcccCCeEEEEeccc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      +.-..+++.+.+.|+|||.+++-+..
T Consensus       260 ~~~~~iL~~~~~al~pgg~lli~e~~  285 (353)
T 4a6d_A          260 GKCSHLLERIYHTCKPGGGILVIESL  285 (353)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEEEee
Confidence            12346789999999999987775544

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.30  E-value=5.3e-07  Score=62.62  Aligned_cols=66  Identities=14%  Similarity=0.161  Sum_probs=51.2

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------------ccHHHH
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------NYCNYH   83 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------------~~~~~~   83 (157)
                      +|+++|+++.+++.          .++++++.+|+.+.++        .++||+|++++...            .....+
T Consensus        46 ~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~--------~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~  107 (170)
T 3q87_B           46 TVVSTDLNIRALES----------HRGGNLVRADLLCSIN--------QESVDVVVFNPPYVPDTDDPIIGGGYLGREVI  107 (170)
T ss_dssp             EEEEEESCHHHHHT----------CSSSCEEECSTTTTBC--------GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHH
T ss_pred             cEEEEECCHHHHhc----------ccCCeEEECChhhhcc--------cCCCCEEEECCCCccCCccccccCCcchHHHH
Confidence            99999999999987          3478999999987322        46899999986432            124567


Q ss_pred             HHHHhcccCCeEEEEec
Q 031568           84 ERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~~~  100 (157)
                      +.+.+.+ |||.+++..
T Consensus       108 ~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B          108 DRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             HHHHHHC-CSSEEEEEE
T ss_pred             HHHHhhC-CCCEEEEEE
Confidence            7777777 999998754

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.30  E-value=1.7e-07  Score=69.30  Aligned_cols=82  Identities=10%  Similarity=0.058  Sum_probs=61.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++.  ++.+|+++|+++.+++.|+++.       +++++.+|+.+. + +     +.++||+|++...   ...
T Consensus        46 G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~  109 (261)
T 3ege_A           46 GGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL-A-L-----PDKSVDGVISILAIHHFSH  109 (261)
T ss_dssp             SHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC-C-S-----CTTCBSEEEEESCGGGCSS
T ss_pred             cHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC-C-C-----CCCCEeEEEEcchHhhccC
Confidence            444444543  7899999999999988776543       799999999763 2 1     2578999998753   245


Q ss_pred             cHHHHHHHHhcccCCeEEEEec
Q 031568           79 YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ...+++.+.+.|+ ||.+++-.
T Consensus       110 ~~~~l~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A          110 LEKSFQEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             HHHHHHHHHHHBC-SSCEEEEE
T ss_pred             HHHHHHHHHHHhC-CcEEEEEE
Confidence            6788999999999 99665543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.29  E-value=1.1e-06  Score=65.57  Aligned_cols=86  Identities=14%  Similarity=0.172  Sum_probs=56.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |.-|..++..  +.+|+++|+++.|++.|++++.....  +..+...+.. .....      .++||+|+++....    
T Consensus        57 G~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v--~~~~~~~~~~-~~~~~------~~~fD~Vv~~~~l~~~~~  125 (261)
T 3iv6_A           57 RFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCV--TIDLLDITAE-IPKEL------AGHFDFVLNDRLINRFTT  125 (261)
T ss_dssp             HHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCC--EEEECCTTSC-CCGGG------TTCCSEEEEESCGGGSCH
T ss_pred             hHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccc--eeeeeecccc-ccccc------CCCccEEEEhhhhHhCCH
Confidence            4444455543  68999999999999999998865411  2233222220 00111      46899999986432    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                       .....+..+.++| |||.+++.
T Consensus       126 ~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          126 EEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             HHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             HHHHHHHHHHHHhC-cCcEEEEE
Confidence             2345788888899 99999875

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.28  E-value=3e-06  Score=63.77  Aligned_cols=66  Identities=12%  Similarity=0.089  Sum_probs=53.2

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      +|.-|..++..  +.+|+++|+++.+++.++++++..+..++++++.+|+.+. +        ..+||.|+.+.+..
T Consensus        39 ~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~-~--------~~~fD~vv~nlpy~  104 (285)
T 1zq9_A           39 TGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT-D--------LPFFDTCVANLPYQ  104 (285)
T ss_dssp             TSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS-C--------CCCCSEEEEECCGG
T ss_pred             ccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc-c--------chhhcEEEEecCcc
Confidence            36667777765  5699999999999999999998777656899999999864 1        34799999987543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.26  E-value=4.9e-07  Score=64.83  Aligned_cols=84  Identities=11%  Similarity=0.041  Sum_probs=61.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~   78 (157)
                      |..+..++..  +.+++++|+++.+++.++++.        .+++.+|+.+....+     ++++||+|++....   ..
T Consensus        44 G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~-----~~~~fD~v~~~~~l~~~~~  108 (230)
T 3cc8_A           44 GALGAAIKEN--GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPY-----EEEQFDCVIFGDVLEHLFD  108 (230)
T ss_dssp             SHHHHHHHTT--TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCS-----CTTCEEEEEEESCGGGSSC
T ss_pred             CHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCC-----CCCccCEEEECChhhhcCC
Confidence            4444445544  489999999999999988754        267888887531111     24689999986532   34


Q ss_pred             cHHHHHHHHhcccCCeEEEEec
Q 031568           79 YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ...+++.+.+.|+|||.+++..
T Consensus       109 ~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A          109 PWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             HHHHHHHTGGGEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEEEe
Confidence            5678899999999999999864

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.25  E-value=6.7e-07  Score=67.16  Aligned_cols=81  Identities=21%  Similarity=0.268  Sum_probs=58.2

Q ss_pred             CcEEEEEeCChhHHHHHHHHHH--------------H---------cC-------CCCcEEEEEccHHHHHHHHhhcCCC
Q 031568           14 ILQITAIDVNRETYEIGLPIIK--------------K---------AG-------VDHKINFIESEALSVLDQLLKYSEN   63 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~--------------~---------~~-------~~~~i~~~~~d~~~~l~~~~~~~~~   63 (157)
                      +.+|+++|+|+++++.|++++-              +         .|       +.++|+|.++|+.+. + +.    .
T Consensus       137 ~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~-~-~~----~  210 (274)
T 1af7_A          137 RWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEK-Q-YN----V  210 (274)
T ss_dssp             SEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCS-S-CC----C
T ss_pred             CeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCC-C-CC----c
Confidence            4699999999999999998751              0         00       013699999998762 1 10    1


Q ss_pred             CCceeEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEec
Q 031568           64 EGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        64 ~~~fD~I~iD~~~-----~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++||+|++-...     +....+++.+.+.|+|||++++..
T Consensus       211 ~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          211 PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             CCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            3579999985421     123567888899999999999843

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.23  E-value=4.1e-06  Score=59.11  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=57.4

Q ss_pred             cccHHHHHhhCC--CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH-----------------------HH
Q 031568            2 HLPTKLFMTGNK--ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-----------------------DQ   56 (157)
Q Consensus         2 g~st~~l~~~~~--~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l-----------------------~~   56 (157)
                      |.-|..++...+  +++|+++|+++..           .. ++++++++|+.+..                       ..
T Consensus        34 G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  101 (201)
T 2plw_A           34 GSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEI  101 (201)
T ss_dssp             CHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC-----------CHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhccccccccccchhhHHHHHhh
Confidence            556667777776  7999999999842           12 46899999986531                       01


Q ss_pred             HhhcCCCCCceeEEEEcCCCcc-------c-------HHHHHHHHhcccCCeEEEEec
Q 031568           57 LLKYSENEGSFDYAFVDADKDN-------Y-------CNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        57 ~~~~~~~~~~fD~I~iD~~~~~-------~-------~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      +     +.++||+|+++.....       .       ...++.+.++|+|||.+++..
T Consensus       102 ~-----~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A          102 L-----QDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             H-----TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c-----CCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            2     1468999999864321       1       125777889999999999853

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.23  E-value=5.5e-07  Score=69.44  Aligned_cols=89  Identities=10%  Similarity=0.018  Sum_probs=65.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++..+|+.+++++|. +.++.  +++++..+..++++++.+|+.+.   +      + +||+|++.....    
T Consensus       196 G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~---~------p-~~D~v~~~~vlh~~~d  262 (348)
T 3lst_A          196 GGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE---V------P-HADVHVLKRILHNWGD  262 (348)
T ss_dssp             SHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC---C------C-CCSEEEEESCGGGSCH
T ss_pred             CHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC---C------C-CCcEEEEehhccCCCH
Confidence            556667888889999999999 55554  44454556667899999999731   1      3 899999864321    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEecccC
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                       ....+++.+.+.|+|||.+++.+...
T Consensus       263 ~~~~~~L~~~~~~LkpgG~l~i~e~~~  289 (348)
T 3lst_A          263 EDSVRILTNCRRVMPAHGRVLVIDAVV  289 (348)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEEECCB
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence             12578999999999999998865543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.20  E-value=2e-06  Score=63.48  Aligned_cols=83  Identities=13%  Similarity=0.187  Sum_probs=60.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC----Cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD----KD   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~----~~   77 (157)
                      |..+..++..  +.+++++|+++.+++.|+++..     .+  ++.+|+.+. + +     +.++||+|++...    ..
T Consensus        66 G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~-~-~-----~~~~fD~v~~~~~~~~~~~  129 (260)
T 2avn_A           66 GKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDL-P-F-----PSGAFEAVLALGDVLSYVE  129 (260)
T ss_dssp             CHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSC-C-S-----CTTCEEEEEECSSHHHHCS
T ss_pred             CHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHC-C-C-----CCCCEEEEEEcchhhhccc
Confidence            3344444443  6799999999999999998753     12  788888753 2 1     2568999998642    13


Q ss_pred             ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      .....++.+.+.|+|||.+++..
T Consensus       130 ~~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          130 NKDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cHHHHHHHHHHHcCCCeEEEEEe
Confidence            46778999999999999999853

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.20  E-value=3.2e-06  Score=64.09  Aligned_cols=64  Identities=13%  Similarity=0.096  Sum_probs=47.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      |.-|..++..  +.+|+++|+++.+++.++++++..+. ++++++.+|+.+..         .++||+|+++.+..
T Consensus        54 G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~---------~~~~D~Vv~n~py~  117 (299)
T 2h1r_A           54 GNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTV---------FPKFDVCTANIPYK  117 (299)
T ss_dssp             STTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSC---------CCCCSEEEEECCGG
T ss_pred             cHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCC---------cccCCEEEEcCCcc
Confidence            5556666554  67999999999999999999988877 58999999997641         35799999997643

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.18  E-value=2.2e-06  Score=71.03  Aligned_cols=77  Identities=12%  Similarity=0.129  Sum_probs=62.3

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCcccHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~~~~~~~~~~   88 (157)
                      ..+|++||.+| ++..|++.++.++++++|++++||+.++-  +      ++++|+|+..-     ..+..++.+....+
T Consensus       385 ~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~--L------PEKVDIIVSEwMG~fLl~E~mlevL~Ardr  455 (637)
T 4gqb_A          385 RIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWV--A------PEKADIIVSELLGSFADNELSPECLDGAQH  455 (637)
T ss_dssp             EEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCC--C------SSCEEEEECCCCBTTBGGGCHHHHHHHHGG
T ss_pred             CcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceecc--C------CcccCEEEEEcCcccccccCCHHHHHHHHH
Confidence            34789999997 67889999999999999999999999862  2      57899999753     12334577777789


Q ss_pred             cccCCeEEEEe
Q 031568           89 LLKVGGIAVYD   99 (157)
Q Consensus        89 ~L~~gG~iv~~   99 (157)
                      +|+|||+++-+
T Consensus       456 ~LKPgGimiPs  466 (637)
T 4gqb_A          456 FLKDDGVSIPG  466 (637)
T ss_dssp             GEEEEEEEESC
T ss_pred             hcCCCcEEccc
Confidence            99999999754

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.16  E-value=6.2e-06  Score=61.46  Aligned_cols=82  Identities=11%  Similarity=-0.038  Sum_probs=62.3

Q ss_pred             HhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-----cHHHH
Q 031568            9 MTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----YCNYH   83 (157)
Q Consensus         9 ~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-----~~~~~   83 (157)
                      +...|.++++++|+|+.+++.+++|+..+|+.  .++.+.|.....        +.++||++++.-..+.     -...|
T Consensus       151 ~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~--------p~~~~DvaL~lkti~~Le~q~kg~g~  220 (281)
T 3lcv_B          151 MGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR--------LDEPADVTLLLKTLPCLETQQRGSGW  220 (281)
T ss_dssp             TTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC--------CCSCCSEEEETTCHHHHHHHSTTHHH
T ss_pred             HhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC--------CCCCcchHHHHHHHHHhhhhhhHHHH
Confidence            33458999999999999999999999999975  678888887543        2678999987532111     11334


Q ss_pred             HHHHhcccCCeEEEEecc
Q 031568           84 ERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~~~~  101 (157)
                       .+.+.|+++|++|.-..
T Consensus       221 -~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          221 -EVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             -HHHHHSSCSEEEEEEEC
T ss_pred             -HHHHHhCCCCEEEeccc
Confidence             67789999999997544

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.16  E-value=2.4e-06  Score=67.18  Aligned_cols=87  Identities=11%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..++..  +.+|+++|+++.+++.|+++    +......++..+..+.++..      +++||+|++...   .+.
T Consensus       119 G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~------~~~fD~I~~~~vl~h~~d  186 (416)
T 4e2x_A          119 GIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT------EGPANVIYAANTLCHIPY  186 (416)
T ss_dssp             TTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH------HCCEEEEEEESCGGGCTT
T ss_pred             CHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC------CCCEEEEEECChHHhcCC
Confidence            4445555543  56999999999999999875    44322222323333333322      478999998753   235


Q ss_pred             cHHHHHHHHhcccCCeEEEEec
Q 031568           79 YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ...+++.+.++|+|||++++..
T Consensus       187 ~~~~l~~~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          187 VQSVLEGVDALLAPDGVFVFED  208 (416)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCeEEEEEe
Confidence            6788999999999999999864

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.15  E-value=5.4e-06  Score=58.77  Aligned_cols=84  Identities=19%  Similarity=0.205  Sum_probs=55.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-----HHHHhhcCCCCCceeEEEEcCCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-----LDQLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----l~~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      |..|..++..  +++|+++|+++..           .. ++++++.+|+.+.     +...... ...++||+|++|+..
T Consensus        37 G~~s~~la~~--~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~-~~~~~~D~Vlsd~~~  101 (191)
T 3dou_A           37 GGWTQVLNSL--ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALRE-EGIEKVDDVVSDAMA  101 (191)
T ss_dssp             CHHHHHHTTT--CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHH-HTCSSEEEEEECCCC
T ss_pred             CHHHHHHHHc--CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhc-ccCCcceEEecCCCc
Confidence            5455555554  8899999999852           22 4799999997652     1111100 001489999999743


Q ss_pred             cc--------------cHHHHHHHHhcccCCeEEEEec
Q 031568           77 DN--------------YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 ~~--------------~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ..              ....++.+.++|+|||.+++.-
T Consensus       102 ~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~  139 (191)
T 3dou_A          102 KVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ  139 (191)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            21              1345677789999999999853

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.07  E-value=3.4e-06  Score=60.53  Aligned_cols=69  Identities=19%  Similarity=0.277  Sum_probs=55.1

Q ss_pred             EEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHhcccCCe
Q 031568           18 TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGG   94 (157)
Q Consensus        18 ~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~~L~~gG   94 (157)
                      +++|+++.+++.++++        +++++.+|+.+. + +     +.++||+|++...   .+....+++.+.+.|+|||
T Consensus        69 ~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG  133 (219)
T 1vlm_A           69 IGVEPSERMAEIARKR--------GVFVLKGTAENL-P-L-----KDESFDFALMVTTICFVDDPERALKEAYRILKKGG  133 (219)
T ss_dssp             EEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-S-----CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEE
T ss_pred             hccCCCHHHHHHHHhc--------CCEEEEcccccC-C-C-----CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCc
Confidence            9999999999999886        578899998653 2 1     2468999998753   2345778999999999999


Q ss_pred             EEEEecc
Q 031568           95 IAVYDNT  101 (157)
Q Consensus        95 ~iv~~~~  101 (157)
                      .+++...
T Consensus       134 ~l~i~~~  140 (219)
T 1vlm_A          134 YLIVGIV  140 (219)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9998643

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.07  E-value=4.8e-06  Score=62.97  Aligned_cols=73  Identities=12%  Similarity=0.081  Sum_probs=54.2

Q ss_pred             HHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEE-EEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------
Q 031568            6 KLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLKYSENEGSFDYAFVDADKD------   77 (157)
Q Consensus         6 ~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~-~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------   77 (157)
                      .+++...+ +++|+++|+++.             + +++++ +++|+.+..  +      .++||+|++|....      
T Consensus        83 ~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~--~------~~~fD~Vvsn~~~~~~g~~~  140 (290)
T 2xyq_A           83 AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVH--T------ANKWDLIISDMYDPRTKHVT  140 (290)
T ss_dssp             HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCC--C------SSCEEEEEECCCCCC---CC
T ss_pred             HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCC--c------cCcccEEEEcCCcccccccc
Confidence            44555555 799999999998             1 26888 999997631  1      36799999985321      


Q ss_pred             --------ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 --------NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 --------~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                              .+...++.+.+.|+|||.+++..
T Consensus       141 ~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          141 KENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             SCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                    12467888999999999999863

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.06  E-value=5.5e-07  Score=68.15  Aligned_cols=85  Identities=19%  Similarity=0.145  Sum_probs=58.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEE-EccHHHHHH-HHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLD-QLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~l~-~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |.-|..++.. +.++|+++|+++.|++.+.++      ..++... ..++...-. .+     +..+||+|++|......
T Consensus        97 G~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~l~~~~l-----~~~~fD~v~~d~sf~sl  164 (291)
T 3hp7_A           97 GGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRYAEPVDF-----TEGLPSFASIDVSFISL  164 (291)
T ss_dssp             SHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGGCCGGGC-----TTCCCSEEEECCSSSCG
T ss_pred             cHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh------CcccceecccCceecchhhC-----CCCCCCEEEEEeeHhhH
Confidence            5555555544 567999999999999885432      1244333 334432211 11     13459999999876677


Q ss_pred             HHHHHHHHhcccCCeEEEE
Q 031568           80 CNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~   98 (157)
                      ...+..+.++|+|||.+++
T Consensus       165 ~~vL~e~~rvLkpGG~lv~  183 (291)
T 3hp7_A          165 NLILPALAKILVDGGQVVA  183 (291)
T ss_dssp             GGTHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHHcCcCCEEEE
Confidence            8889999999999999987

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.04  E-value=3.2e-06  Score=67.42  Aligned_cols=78  Identities=14%  Similarity=0.183  Sum_probs=61.9

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-------------
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-------------   78 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-------------   78 (157)
                      +..+++++|+++.++++|+.|+...|+.. +++++++|+....        ..++||+|+.+++...             
T Consensus       207 ~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~--------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~  278 (445)
T 2okc_A          207 RDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE--------PSTLVDVILANPPFGTRPAGSVDINRPDF  278 (445)
T ss_dssp             HHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC--------CSSCEEEEEECCCSSCCCTTCCCCCCTTS
T ss_pred             cCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc--------ccCCcCEEEECCCCCCcccccchhhHhhc
Confidence            34689999999999999999999888753 6789999987642        1348999999874211             


Q ss_pred             -------cHHHHHHHHhcccCCeEEEE
Q 031568           79 -------YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 -------~~~~~~~~~~~L~~gG~iv~   98 (157)
                             ...+++.+.++|+|||.+++
T Consensus       279 ~~~~~~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          279 YVETKNNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             SSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCcchHHHHHHHHHHHhccCCEEEE
Confidence                   13678899999999998865

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.03  E-value=1.7e-06  Score=60.04  Aligned_cols=73  Identities=11%  Similarity=0.141  Sum_probs=55.3

Q ss_pred             EEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH-HhhcCCCCCceeEEEEcCC---C-cccHHHHHHHHhcccCC
Q 031568           19 AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGSFDYAFVDAD---K-DNYCNYHERLMKLLKVG   93 (157)
Q Consensus        19 ~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~-~~~~~~~~~~fD~I~iD~~---~-~~~~~~~~~~~~~L~~g   93 (157)
                      ++|+++.|++.|+++..     .+++++.+|+.+.... +     ++++||+|++...   . ......++++.+.|+||
T Consensus        25 ~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~-----~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~Lkpg   94 (176)
T 2ld4_A           25 PVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAH-----KESSFDIILSGLVPGSTTLHSAEILAEIARILRPG   94 (176)
T ss_dssp             CHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCC-----CSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEE
T ss_pred             eeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccC-----CCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCC
Confidence            37899999999998753     2489999999864210 0     1578999998532   2 45688999999999999


Q ss_pred             eEEEEecc
Q 031568           94 GIAVYDNT  101 (157)
Q Consensus        94 G~iv~~~~  101 (157)
                      |.+++.+.
T Consensus        95 G~l~~~~~  102 (176)
T 2ld4_A           95 GCLFLKEP  102 (176)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEcc
Confidence            99998644

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.02  E-value=1.3e-05  Score=56.14  Aligned_cols=83  Identities=10%  Similarity=0.077  Sum_probs=56.9

Q ss_pred             cccHHHHHhhCCC---------cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEE-EccHHHHHH-----HHhhcCCCCCc
Q 031568            2 HLPTKLFMTGNKI---------LQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLD-----QLLKYSENEGS   66 (157)
Q Consensus         2 g~st~~l~~~~~~---------~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~l~-----~~~~~~~~~~~   66 (157)
                      |..+..++...+.         ++|+++|+++..           .. ++++++ .+|+.+...     ...    +.++
T Consensus        34 G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~~~~~~----~~~~   97 (196)
T 2nyu_A           34 GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQRILEVL----PGRR   97 (196)
T ss_dssp             CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHHHHHHS----GGGC
T ss_pred             CHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHHHHHhc----CCCC
Confidence            5566677776554         899999999842           22 368889 898754321     111    1357


Q ss_pred             eeEEEEcCCCcc-------c-------HHHHHHHHhcccCCeEEEEec
Q 031568           67 FDYAFVDADKDN-------Y-------CNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        67 fD~I~iD~~~~~-------~-------~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ||+|+++.....       .       ...++.+.++|+|||.+++..
T Consensus        98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            999999763211       1       367888899999999999864

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.97  E-value=8.2e-06  Score=68.64  Aligned_cols=81  Identities=14%  Similarity=0.121  Sum_probs=59.1

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccHHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHER   85 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~~~~~~   85 (157)
                      +..+|+++|+++.+++.|++|++.+|+.+.+++.++|+.+..+..     ..++||+|+++++..       ....+++.
T Consensus       255 ~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~-----~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~  329 (703)
T 3v97_A          255 YSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL-----PKGPYGTVLSNPPYGERLDSEPALIALHSL  329 (703)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC-----TTCCCCEEEECCCCCC---CCHHHHHHHHH
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc-----ccCCCCEEEeCCCccccccchhHHHHHHHH
Confidence            347899999999999999999999999888999999998742211     123799999998632       22333433


Q ss_pred             ---HHhcccCCeEEEE
Q 031568           86 ---LMKLLKVGGIAVY   98 (157)
Q Consensus        86 ---~~~~L~~gG~iv~   98 (157)
                         .++.+.|||.+.+
T Consensus       330 l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          330 LGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHCTTCEEEE
T ss_pred             HHHHHHhhCCCCeEEE
Confidence               3344557877654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.96  E-value=3.7e-06  Score=65.41  Aligned_cols=84  Identities=6%  Similarity=0.062  Sum_probs=63.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++..+|+.+++++|+ |++++.|+++       ++++++.+|+.+.   +      ... |+|++.....    
T Consensus       215 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~------p~~-D~v~~~~vlh~~~~  276 (368)
T 3reo_A          215 GAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDG---V------PKG-DAIFIKWICHDWSD  276 (368)
T ss_dssp             SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTC---C------CCC-SEEEEESCGGGBCH
T ss_pred             CHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCC---C------CCC-CEEEEechhhcCCH
Confidence            556667888889999999999 8888776542       5899999999762   1      223 9999865322    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEecccC
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                       ....+++.+.+.|+|||.+++.+...
T Consensus       277 ~~~~~~l~~~~~~L~pgG~l~i~e~~~  303 (368)
T 3reo_A          277 EHCLKLLKNCYAALPDHGKVIVAEYIL  303 (368)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence             23467899999999999988765543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.94  E-value=1.2e-06  Score=64.07  Aligned_cols=85  Identities=12%  Similarity=0.110  Sum_probs=53.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHH-HHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVL-DQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l-~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |..|..++.. +..+|+++|+++.+++.|+++..      ++.... .++.... ..+     ....||.+.+|......
T Consensus        49 G~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~D~v~~~l  116 (232)
T 3opn_A           49 GGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLADF-----EQGRPSFTSIDVSFISL  116 (232)
T ss_dssp             SHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGGGC-----CSCCCSEEEECCSSSCG
T ss_pred             CHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHhHc-----CcCCCCEEEEEEEhhhH
Confidence            5555556654 44699999999999998877532      222221 1221110 011     11236777777655556


Q ss_pred             HHHHHHHHhcccCCeEEEE
Q 031568           80 CNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~   98 (157)
                      ..++..+.+.|+|||.+++
T Consensus       117 ~~~l~~i~rvLkpgG~lv~  135 (232)
T 3opn_A          117 DLILPPLYEILEKNGEVAA  135 (232)
T ss_dssp             GGTHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHhccCCCEEEE
Confidence            7789999999999999987

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.93  E-value=7e-06  Score=63.74  Aligned_cols=84  Identities=6%  Similarity=0.034  Sum_probs=63.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++.++|+.+++++|+ |++++.|++       .++++++.+|+.+  + +      ... |+|++.....    
T Consensus       213 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~-~------p~~-D~v~~~~vlh~~~d  274 (364)
T 3p9c_A          213 GATVAAIAAHYPTIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMFK--E-V------PSG-DTILMKWILHDWSD  274 (364)
T ss_dssp             SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTT--C-C------CCC-SEEEEESCGGGSCH
T ss_pred             CHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcCC--C-C------CCC-CEEEehHHhccCCH
Confidence            556677888889999999999 888877654       2589999999986  2 1      223 9999865322    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEecccC
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                       ....+++.+.+.|+|||.+++.+...
T Consensus       275 ~~~~~~L~~~~~~L~pgG~l~i~e~~~  301 (364)
T 3p9c_A          275 QHCATLLKNCYDALPAHGKVVLVQCIL  301 (364)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence             23467899999999999988765543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.90  E-value=0.00015  Score=53.37  Aligned_cols=87  Identities=14%  Similarity=0.083  Sum_probs=64.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |+..+.++.. ++.+++++|+|+.+++.+++++..+|.  +.++.++|.....+        .++||+|++--..+    
T Consensus       115 G~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~--------~~~~DvvLllk~lh~LE~  183 (253)
T 3frh_A          115 GLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPP--------AEAGDLALIFKLLPLLER  183 (253)
T ss_dssp             TTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCC--------CCBCSEEEEESCHHHHHH
T ss_pred             CccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCC--------CCCcchHHHHHHHHHhhh
Confidence            5555555545 899999999999999999999999884  68889999876432        56899998752111    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                       .-...+ .+.+.|++++++|.-.
T Consensus       184 q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          184 EQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             HSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             hchhhHH-HHHHHhcCCCEEEEcC
Confidence             111233 6667999999998754

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.89  E-value=5.6e-06  Score=65.00  Aligned_cols=69  Identities=17%  Similarity=0.296  Sum_probs=53.9

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---------------
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---------------   77 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---------------   77 (157)
                      +..+++++|+++.+++.|          .+++++++|+.+..        ..++||+|+.+++..               
T Consensus        63 ~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~--------~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~  124 (421)
T 2ih2_A           63 TAYRFVGVEIDPKALDLP----------PWAEGILADFLLWE--------PGEAFDLILGNPPYGIVGEASKYPIHVFKA  124 (421)
T ss_dssp             SCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCC--------CSSCEEEEEECCCCCCBSCTTTCSBCCCHH
T ss_pred             CCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcC--------ccCCCCEEEECcCccCcccccccccccCHH
Confidence            678999999999999877          47999999998752        146899999986321               


Q ss_pred             -----------------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 -----------------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 -----------------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                                       .+..+++.+.++|+|||.+++-
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i  163 (421)
T 2ih2_A          125 VKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV  163 (421)
T ss_dssp             HHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEE
Confidence                             0124577888999999998773

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.86  E-value=9e-06  Score=63.14  Aligned_cols=83  Identities=12%  Similarity=0.166  Sum_probs=63.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---c
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~   78 (157)
                      |..+..++...|+.+++++|+ +.+++.|++      . ++++++.+|+.+  + +      .. ||+|++.....   .
T Consensus       221 G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~--~-~------~~-~D~v~~~~~lh~~~d  282 (372)
T 1fp1_D          221 GRNLELIISKYPLIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFA--S-V------PQ-GDAMILKAVCHNWSD  282 (372)
T ss_dssp             SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT--C-C------CC-EEEEEEESSGGGSCH
T ss_pred             cHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCccc--C-C------CC-CCEEEEecccccCCH
Confidence            556667777889999999999 999887765      1 469999999976  2 1      23 99999865322   2


Q ss_pred             --cHHHHHHHHhcccCCeEEEEeccc
Q 031568           79 --YCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        79 --~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                        ...+++.+.+.|+|||.+++.+..
T Consensus       283 ~~~~~~l~~~~~~L~pgG~l~i~e~~  308 (372)
T 1fp1_D          283 EKCIEFLSNCHKALSPNGKVIIVEFI  308 (372)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence              237889999999999999876543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.83  E-value=1.2e-05  Score=61.87  Aligned_cols=83  Identities=7%  Similarity=0.062  Sum_probs=62.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---c
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~   78 (157)
                      |..+..++..+|+.+++++|+ |.+++.|++      . ++++++.+|+.+.   +      . .||+|++.....   .
T Consensus       200 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~---~------p-~~D~v~~~~~lh~~~d  261 (352)
T 1fp2_A          200 GTTAKIICETFPKLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFTS---I------P-NADAVLLKYILHNWTD  261 (352)
T ss_dssp             SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTTC---C------C-CCSEEEEESCGGGSCH
T ss_pred             cHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C-CCcEEEeccccCC---C------C-CccEEEeehhhccCCH
Confidence            555666777889999999999 999988765      1 3599999999752   1      2 499999865321   2


Q ss_pred             --cHHHHHHHHhcccC---CeEEEEeccc
Q 031568           79 --YCNYHERLMKLLKV---GGIAVYDNTL  102 (157)
Q Consensus        79 --~~~~~~~~~~~L~~---gG~iv~~~~~  102 (157)
                        ...+++.+.+.|+|   ||.+++.+..
T Consensus       262 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          262 KDCLRILKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             HHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence              23788999999999   9988775544

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.83  E-value=4.2e-05  Score=62.49  Aligned_cols=78  Identities=10%  Similarity=0.054  Sum_probs=61.6

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCC----cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc------------
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDH----KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------------   78 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~------------   78 (157)
                      .+++++|+++.++++|+.|+...|+..    +++++++|+......      ..++||+|+.+++...            
T Consensus       212 ~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~------~~~~fD~Vv~NPPf~~~~~~~~~~~~~~  285 (541)
T 2ar0_A          212 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSAAGTNITRTFVH  285 (541)
T ss_dssp             TSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH------TSCCEEEEEECCCCTTCSSCCCCSCCSS
T ss_pred             ceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccc------cccCCeEEEECCCcccccchhhHhhcCC
Confidence            479999999999999999998888763    278999998765322      1467999999975221            


Q ss_pred             -----cHHHHHHHHhcccCCeEEEE
Q 031568           79 -----YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 -----~~~~~~~~~~~L~~gG~iv~   98 (157)
                           ...+++.+.++|+|||.+++
T Consensus       286 ~~~~~~~~Fl~~~l~~Lk~gGr~a~  310 (541)
T 2ar0_A          286 PTSNKQLCFMQHIIETLHPGGRAAV  310 (541)
T ss_dssp             CCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCchHHHHHHHHHHHhCCCCEEEE
Confidence                 23678889999999998765

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.80  E-value=3.3e-05  Score=64.63  Aligned_cols=83  Identities=11%  Similarity=0.023  Sum_probs=60.5

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----CcccHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~~~~~~~~~~~~~   88 (157)
                      ..+|++||.++.++..++.... +|+.++|+++.+|+.++-.-...  ...++.|+|+..--     .+..++.++.+.+
T Consensus       446 ~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~~~--~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r  522 (745)
T 3ua3_A          446 KVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIAKD--RGFEQPDIIVSELLGSFGDNELSPECLDGVTG  522 (745)
T ss_dssp             EEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHHHH--TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGG
T ss_pred             ccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccccc--CCCCcccEEEEeccccccchhccHHHHHHHHH
Confidence            4599999999988766666554 78888999999999987321100  01468999997532     1234577777789


Q ss_pred             cccCCeEEEEe
Q 031568           89 LLKVGGIAVYD   99 (157)
Q Consensus        89 ~L~~gG~iv~~   99 (157)
                      .|+|||+++-+
T Consensus       523 ~Lkp~Gi~iP~  533 (745)
T 3ua3_A          523 FLKPTTISIPQ  533 (745)
T ss_dssp             GSCTTCEEESC
T ss_pred             hCCCCcEEECC
Confidence            99999998754

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.77  E-value=8.2e-05  Score=56.32  Aligned_cols=64  Identities=14%  Similarity=0.138  Sum_probs=50.2

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      +|.-|..++..  +.+|+++|+|+.+++.++++++.  . ++++++++|+.+.-  +.     ..+||.|+.+.+.
T Consensus        61 ~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~--~-~~v~vi~gD~l~~~--~~-----~~~fD~Iv~NlPy  124 (295)
T 3gru_A           61 KGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL--Y-NNIEIIWGDALKVD--LN-----KLDFNKVVANLPY  124 (295)
T ss_dssp             TSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH--C-SSEEEEESCTTTSC--GG-----GSCCSEEEEECCG
T ss_pred             chHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc--C-CCeEEEECchhhCC--cc-----cCCccEEEEeCcc
Confidence            36667777765  68999999999999999999873  2 48999999998741  11     3469999988654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.75  E-value=8.6e-05  Score=60.93  Aligned_cols=65  Identities=20%  Similarity=0.198  Sum_probs=51.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |+-+..||.  -+++|++||.++.+++.|+.++.+.|.. ++++.++++.+.....     ..++||+|++-.
T Consensus        78 G~~~~~la~--~ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~-----~~~~fD~v~~~e  142 (569)
T 4azs_A           78 GFFSLSLAS--KGATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAAL-----EEGEFDLAIGLS  142 (569)
T ss_dssp             SHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHC-----CTTSCSEEEEES
T ss_pred             cHHHHHHHh--CCCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhc-----cCCCccEEEECc
Confidence            444445554  3889999999999999999999888754 6999999999876543     256899999754

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.55  E-value=7.4e-05  Score=57.60  Aligned_cols=83  Identities=13%  Similarity=0.046  Sum_probs=62.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---c
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~   78 (157)
                      |..+..++..+|+.+++++|+ +.+++.|++      . ++++++.+|+.+  + +      . +||+|++.....   .
T Consensus       205 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~--~-~------~-~~D~v~~~~vlh~~~d  266 (358)
T 1zg3_A          205 GGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK--S-I------P-SADAVLLKWVLHDWND  266 (358)
T ss_dssp             SHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT--C-C------C-CCSEEEEESCGGGSCH
T ss_pred             CHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC--C-C------C-CceEEEEcccccCCCH
Confidence            555667777889999999999 788877664      2 369999999976  2 1      2 599999865321   2


Q ss_pred             --cHHHHHHHHhcccC---CeEEEEeccc
Q 031568           79 --YCNYHERLMKLLKV---GGIAVYDNTL  102 (157)
Q Consensus        79 --~~~~~~~~~~~L~~---gG~iv~~~~~  102 (157)
                        ...+++.+.+.|+|   ||.+++.+..
T Consensus       267 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          267 EQSLKILKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             HHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence              23788999999999   9988775443

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.51  E-value=8.9e-06  Score=61.02  Aligned_cols=85  Identities=5%  Similarity=-0.087  Sum_probs=54.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHH-HHcCCCCcEEEE--EccHHHHHHHHhhcCCCCCceeEEEEcCCC--
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPII-KKAGVDHKINFI--ESEALSVLDQLLKYSENEGSFDYAFVDADK--   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~-~~~~~~~~i~~~--~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--   76 (157)
                      |..|..++..   ++|++||+++ ++..+++.. .......+++++  .+|+.+.         ++++||+|++|...  
T Consensus        94 G~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---------~~~~fD~Vvsd~~~~~  160 (276)
T 2wa2_A           94 GSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM---------EPFQADTVLCDIGESN  160 (276)
T ss_dssp             CHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC---------CCCCCSEEEECCCCCC
T ss_pred             CHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC---------CCCCcCEEEECCCcCC
Confidence            4445555544   7999999998 533332210 001111268899  9998762         25689999998641  


Q ss_pred             cc-----c--HHHHHHHHhcccCCe--EEEEe
Q 031568           77 DN-----Y--CNYHERLMKLLKVGG--IAVYD   99 (157)
Q Consensus        77 ~~-----~--~~~~~~~~~~L~~gG--~iv~~   99 (157)
                      ..     .  ...++.+.++|+|||  .++++
T Consensus       161 ~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~  192 (276)
T 2wa2_A          161 PTAAVEASRTLTVLNVISRWLEYNQGCGFCVK  192 (276)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             CchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence            01     0  135777889999999  88884

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.50  E-value=0.00026  Score=52.43  Aligned_cols=65  Identities=9%  Similarity=0.174  Sum_probs=48.1

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcCC
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      +|.-|..++..  +.+|+++|+|+.+++.++++++.   .++++++++|+.++ ++.+.    .+++|| |+.+.+
T Consensus        40 ~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~----~~~~~~-vv~NlP  105 (255)
T 3tqs_A           40 RGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVK----TDKPLR-VVGNLP  105 (255)
T ss_dssp             TTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGGSC----CSSCEE-EEEECC
T ss_pred             ccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHHhc----cCCCeE-EEecCC
Confidence            36667667664  48999999999999999999865   35899999999876 22221    134688 776654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.48  E-value=5.2e-05  Score=63.44  Aligned_cols=83  Identities=11%  Similarity=0.057  Sum_probs=57.7

Q ss_pred             cEEEEEeCChhHHHHHHHHH--------------HHc-----C-----CCC---cEEEEEccHHHHHHHHhhcCCCCCce
Q 031568           15 LQITAIDVNRETYEIGLPII--------------KKA-----G-----VDH---KINFIESEALSVLDQLLKYSENEGSF   67 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~--------------~~~-----~-----~~~---~i~~~~~d~~~~l~~~~~~~~~~~~f   67 (157)
                      .+++++|..|-..+.+++.+              +..     |     +++   +++++.||+.+.++++...  ....+
T Consensus        95 l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~  172 (689)
T 3pvc_A           95 LHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCHRILLADGAITLDLWFGDVNTLLPTLDDS--LNNQV  172 (689)
T ss_dssp             EEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEEEEEETTTTEEEEEEESCHHHHGGGCCGG--GTTCE
T ss_pred             EEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCceEEEecCCcEEEEEEccCHHHHHhhcccc--cCCce
Confidence            67999999775555554422              221     1     111   5789999999999875210  13679


Q ss_pred             eEEEEcCCCcc------cHHHHHHHHhcccCCeEEEEe
Q 031568           68 DYAFVDADKDN------YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        68 D~I~iD~~~~~------~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      |.+|+|+..+.      ..++|..+.+++++||.+..-
T Consensus       173 da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  210 (689)
T 3pvc_A          173 DAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF  210 (689)
T ss_dssp             EEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred             eEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence            99999985443      378899999999999998764

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.47  E-value=0.00032  Score=52.67  Aligned_cols=65  Identities=8%  Similarity=0.063  Sum_probs=48.2

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |..++..  +++|+++|.||.+++.|++ ++.    +++++++++..++-..+.+.  ..+++|.|++|.+.+.
T Consensus        37 S~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~--g~~~vDgIL~DLGvSS  101 (285)
T 1wg8_A           37 ARGILER--GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAAL--GVERVDGILADLGVSS  101 (285)
T ss_dssp             HHHHHHT--TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHT--TCSCEEEEEEECSCCH
T ss_pred             HHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHc--CCCCcCEEEeCCcccc
Confidence            4445554  7899999999999999998 643    58999999998764333210  1257999999976543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.44  E-value=7.3e-05  Score=61.12  Aligned_cols=79  Identities=9%  Similarity=0.114  Sum_probs=61.0

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---------------
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---------------   78 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---------------   78 (157)
                      ..+++++|+++.++.+|+.|+...|+..++.+.++|....-. .     ...+||+|+.+++...               
T Consensus       283 ~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~-~-----~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~  356 (544)
T 3khk_A          283 QISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ-H-----PDLRADFVMTNPPFNMKDWWHEKLADDPRWT  356 (544)
T ss_dssp             GEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-C-----TTCCEEEEEECCCSSCCSCCCGGGTTCGGGE
T ss_pred             hceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-c-----ccccccEEEECCCcCCccccchhhhhhhhhh
Confidence            568999999999999999999999987666668999765311 1     1468999999875221               


Q ss_pred             -----------------cHHHHHHHHhcccCCeEEEE
Q 031568           79 -----------------YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 -----------------~~~~~~~~~~~L~~gG~iv~   98 (157)
                                       ...+++.+.++|+|||.+++
T Consensus       357 ~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai  393 (544)
T 3khk_A          357 INTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMAL  393 (544)
T ss_dssp             ECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred             cCcccccccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence                             02478888999999998654

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.43  E-value=2.6e-05  Score=59.27  Aligned_cols=83  Identities=7%  Similarity=-0.074  Sum_probs=53.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeC----ChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568            2 HLPTKLFMTGNKILQITAIDV----NRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~----~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      |..|..++..   ++|++||+    ++.+++.++  .+..+. ++++++.+ |+.+.         +.++||+|++|...
T Consensus        94 G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l---------~~~~fD~V~sd~~~  158 (305)
T 2p41_A           94 GGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFI---------PPERCDTLLCDIGE  158 (305)
T ss_dssp             SHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTS---------CCCCCSEEEECCCC
T ss_pred             CHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccC---------CcCCCCEEEECCcc
Confidence            5556556554   68999999    554332111  111121 47999999 88753         14689999998753


Q ss_pred             c--cc-------HHHHHHHHhcccCCeEEEEe
Q 031568           77 D--NY-------CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        77 ~--~~-------~~~~~~~~~~L~~gG~iv~~   99 (157)
                      .  ..       ...+..+.++|+|||.++++
T Consensus       159 ~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          159 SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             ccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            2  10       13567777999999999985

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.38  E-value=0.0005  Score=56.16  Aligned_cols=81  Identities=14%  Similarity=0.160  Sum_probs=62.2

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHH-HHHhhcCCCCCceeEEEEcCCCc-------------
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVL-DQLLKYSENEGSFDYAFVDADKD-------------   77 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l-~~~~~~~~~~~~fD~I~iD~~~~-------------   77 (157)
                      +..+++++|+++.++.+|+.|+...|+. +++.+.++|....- +..     ...+||+|+.+|+..             
T Consensus       247 ~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~-----~~~~fD~IvaNPPf~~~~~~~~~~~~d~  321 (542)
T 3lkd_A          247 QTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQ-----EPTNFDGVLMNPPYSAKWSASSGFMDDP  321 (542)
T ss_dssp             TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCS-----SCCCBSEEEECCCTTCCCCCCGGGGGST
T ss_pred             cCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccc-----ccccccEEEecCCcCCccccchhhhhhh
Confidence            4679999999999999999999998885 47899999987531 111     146799999987421             


Q ss_pred             c---c----------HHHHHHHHhccc-CCeEEEE
Q 031568           78 N---Y----------CNYHERLMKLLK-VGGIAVY   98 (157)
Q Consensus        78 ~---~----------~~~~~~~~~~L~-~gG~iv~   98 (157)
                      .   +          ..+++.+.++|+ +||.+++
T Consensus       322 rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~  356 (542)
T 3lkd_A          322 RFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI  356 (542)
T ss_dssp             TTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred             hhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence            0   1          236888899999 9998754

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.37  E-value=0.00021  Score=52.81  Aligned_cols=53  Identities=15%  Similarity=0.176  Sum_probs=41.0

Q ss_pred             cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----------------ccHHHHHHHHhcccCCeEEEEe
Q 031568           42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----------------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++++||+.+.++.+.     .++||+||+|++-.                 ....+++.+.++|+|+|.+++.
T Consensus         4 ~~~l~~gD~~~~l~~l~-----~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            4 INKIHQMNCFDFLDQVE-----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSSEEECCHHHHHHHSC-----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCeEEechHHHHHHhcc-----ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            34689999999998763     57899999999631                 1234567778899999999875

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.37  E-value=1e-05  Score=60.33  Aligned_cols=86  Identities=9%  Similarity=-0.072  Sum_probs=54.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHH-HHcCCCCcEEEE--EccHHHHHHHHhhcCCCCCceeEEEEcCCC--
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPII-KKAGVDHKINFI--ESEALSVLDQLLKYSENEGSFDYAFVDADK--   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~-~~~~~~~~i~~~--~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--   76 (157)
                      |..|..++..   ++|++||+++ ++..+++.. .......++.++  .+|+.+.         ++++||+|++|...  
T Consensus        86 G~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---------~~~~fD~V~sd~~~~~  152 (265)
T 2oxt_A           86 GGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL---------PVERTDVIMCDVGESS  152 (265)
T ss_dssp             SHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS---------CCCCCSEEEECCCCCC
T ss_pred             CHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC---------CCCCCcEEEEeCcccC
Confidence            4445555544   7999999998 433222110 000111268889  8999763         24689999998641  


Q ss_pred             ccc-------HHHHHHHHhcccCCe--EEEEec
Q 031568           77 DNY-------CNYHERLMKLLKVGG--IAVYDN  100 (157)
Q Consensus        77 ~~~-------~~~~~~~~~~L~~gG--~iv~~~  100 (157)
                      ...       ...++.+.++|+|||  .+++..
T Consensus       153 ~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          153 PKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            011       126777889999999  888853

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.29  E-value=0.00032  Score=53.61  Aligned_cols=54  Identities=19%  Similarity=0.229  Sum_probs=42.5

Q ss_pred             CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----------------ccHHHHHHHHhcccCCeEEEEe
Q 031568           41 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        41 ~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----------------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ++.++++||+.+.++.+.     .++||+||+|++-.                 .+.+.++.+.++|+|||.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~l~-----~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFP-----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGSC-----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCC-----CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            468899999999887652     57899999998631                 1345677788999999999874

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.28  E-value=9.7e-05  Score=52.50  Aligned_cols=64  Identities=19%  Similarity=0.229  Sum_probs=49.2

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--CcccHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~~~~~~~~~~~L~~   92 (157)
                      .+++++|+++.                +++++.+|+.+. + +     +.++||+|++...  ......+++.+.++|+|
T Consensus        87 ~~v~~~D~s~~----------------~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~  143 (215)
T 2zfu_A           87 NPVHCFDLASL----------------DPRVTVCDMAQV-P-L-----EDESVDVAVFCLSLMGTNIRDFLEEANRVLKP  143 (215)
T ss_dssp             SCEEEEESSCS----------------STTEEESCTTSC-S-C-----CTTCEEEEEEESCCCSSCHHHHHHHHHHHEEE
T ss_pred             ccEEEEeCCCC----------------CceEEEeccccC-C-C-----CCCCEeEEEEehhccccCHHHHHHHHHHhCCC
Confidence            68999999988                456788888762 2 1     2568999998653  24567889999999999


Q ss_pred             CeEEEEecc
Q 031568           93 GGIAVYDNT  101 (157)
Q Consensus        93 gG~iv~~~~  101 (157)
                      ||.+++.+.
T Consensus       144 gG~l~i~~~  152 (215)
T 2zfu_A          144 GGLLKVAEV  152 (215)
T ss_dssp             EEEEEEEEC
T ss_pred             CeEEEEEEc
Confidence            999998643

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.21  E-value=0.00061  Score=52.05  Aligned_cols=53  Identities=15%  Similarity=0.211  Sum_probs=41.4

Q ss_pred             cEEEE-EccHHHHHHHHhhcCCCCCceeEEEEcCCCc----------cc----HHHHHHHHhcccCCeEEEEe
Q 031568           42 KINFI-ESEALSVLDQLLKYSENEGSFDYAFVDADKD----------NY----CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        42 ~i~~~-~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----------~~----~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..+++ +||+.+.++.+.     .++||+||+|++-.          .|    ...+..+.++|+|||.+++.
T Consensus        38 ~~~l~i~gD~l~~L~~l~-----~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~  105 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKLP-----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF  105 (319)
T ss_dssp             EEEEEEECCHHHHHHTSC-----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEECCcHHHHHHhCc-----cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            46788 999999998763     56899999999632          12    34566778899999999885

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.16  E-value=0.0023  Score=48.59  Aligned_cols=51  Identities=14%  Similarity=0.088  Sum_probs=41.4

Q ss_pred             EEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEE
Q 031568           43 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        43 i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      ++++.||+.+.++++.     ..+||+||.|+-.+      ...++|+.+.++++|||+++.
T Consensus       168 L~l~~GDa~~~l~~l~-----~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          168 LKVLLGDARKRIKEVE-----NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             EEEEESCHHHHGGGCC-----SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEechHHHHHhhhc-----ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            5688999999998762     35799999998322      236889999999999999985

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.11  E-value=0.00065  Score=51.15  Aligned_cols=54  Identities=19%  Similarity=0.131  Sum_probs=40.3

Q ss_pred             CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---c--------------------cHHHHHHHHhcccCCeEEE
Q 031568           41 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N--------------------YCNYHERLMKLLKVGGIAV   97 (157)
Q Consensus        41 ~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~--------------------~~~~~~~~~~~L~~gG~iv   97 (157)
                      .++++++||+.+.++.+     ++++||+|++|++-.   .                    +..+++.+.++|+|||.++
T Consensus        20 ~~~~i~~gD~~~~l~~l-----~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~   94 (297)
T 2zig_A           20 GVHRLHVGDAREVLASF-----PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLV   94 (297)
T ss_dssp             -CEEEEESCHHHHHTTS-----CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCCEEEECcHHHHHhhC-----CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence            36899999999988755     257899999998531   1                    1235567789999999987


Q ss_pred             Ee
Q 031568           98 YD   99 (157)
Q Consensus        98 ~~   99 (157)
                      +.
T Consensus        95 i~   96 (297)
T 2zig_A           95 IV   96 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.11  E-value=0.001  Score=49.70  Aligned_cols=85  Identities=11%  Similarity=-0.016  Sum_probs=55.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.-|..++..  +.+|+++|+|+.+++.+++++..    ++++++++|+.++-..      ....+|.|+.+.+......
T Consensus        58 G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~------~~~~~~~iv~NlPy~iss~  125 (271)
T 3fut_A           58 GALTRALLEA--GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWE------EVPQGSLLVANLPYHIATP  125 (271)
T ss_dssp             SHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGG------GSCTTEEEEEEECSSCCHH
T ss_pred             HHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChh------hccCccEEEecCcccccHH
Confidence            5556566654  47999999999999999998752    4899999999875211      0136899998875433333


Q ss_pred             HHHHHHhc-ccCCeEEEE
Q 031568           82 YHERLMKL-LKVGGIAVY   98 (157)
Q Consensus        82 ~~~~~~~~-L~~gG~iv~   98 (157)
                      ++..++.. .-+.+++++
T Consensus       126 il~~ll~~~~~~~~~lm~  143 (271)
T 3fut_A          126 LVTRLLKTGRFARLVFLV  143 (271)
T ss_dssp             HHHHHHHHCCEEEEEEEE
T ss_pred             HHHHHhcCCCCCEEEEEe
Confidence            44333322 113445544

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=97.10  E-value=0.0013  Score=48.01  Aligned_cols=47  Identities=11%  Similarity=0.101  Sum_probs=38.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   53 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   53 (157)
                      |.-|..++..  +.+|+++|+++.+++.++++++..   ++++++++|+.+.
T Consensus        42 G~lt~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~   88 (244)
T 1qam_A           42 GHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQF   88 (244)
T ss_dssp             SHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGC
T ss_pred             hHHHHHHHHc--CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhC
Confidence            5556666665  489999999999999999988642   4899999999874

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.91  E-value=0.0016  Score=55.56  Aligned_cols=79  Identities=11%  Similarity=0.008  Sum_probs=54.0

Q ss_pred             CcEEEEEeCChhHHHHH--HHHHHHcCCC---CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc----------
Q 031568           14 ILQITAIDVNRETYEIG--LPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----------   78 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a--~~~~~~~~~~---~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~----------   78 (157)
                      ..+++++|+++.+++.|  +.|+..+++.   +...+..+|..+.-..      ..++||+|+.+++...          
T Consensus       348 ~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~------~~~kFDVVIgNPPYg~~~~~~~e~kd  421 (878)
T 3s1s_A          348 PRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE------DFANVSVVVMNPPYVSGVTDPAIKRK  421 (878)
T ss_dssp             GGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG------GGTTEEEEEECCBCCSSCCCHHHHHH
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc------ccCCCCEEEECCCccccccchhhhhh
Confidence            46899999999999999  7776553322   1245666776652111      1457999999985310          


Q ss_pred             ----------------------cHHHHHHHHhcccCCeEEEE
Q 031568           79 ----------------------YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 ----------------------~~~~~~~~~~~L~~gG~iv~   98 (157)
                                            +..+++.+.++|++||.+++
T Consensus       422 ~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf  463 (878)
T 3s1s_A          422 FAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISA  463 (878)
T ss_dssp             HHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEE
Confidence                                  22356778899999999876

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.91  E-value=0.0016  Score=50.02  Aligned_cols=67  Identities=15%  Similarity=0.218  Sum_probs=47.7

Q ss_pred             HHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568            5 TKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         5 t~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      |..++.. .|+++|+++|.||++++.|+ .+    ..+|+++++++..++...+.+. +-.+++|.|++|-+.+
T Consensus        72 S~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~-g~~~~vDgILfDLGVS  139 (347)
T 3tka_A           72 SRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAER-DLIGKIDGILLDLGVS  139 (347)
T ss_dssp             HHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHT-TCTTCEEEEEEECSCC
T ss_pred             HHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhc-CCCCcccEEEECCccC
Confidence            4555555 47899999999999999984 33    2368999999988875544320 0113699999986543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=96.85  E-value=6e-05  Score=55.18  Aligned_cols=85  Identities=12%  Similarity=0.126  Sum_probs=58.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc--
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~--   79 (157)
                      |.-|..++..  +.+|+++|+++.+++.|+++++   ..++++++++|+.+.-  +.    ..++| .|+.+++....  
T Consensus        41 G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~--~~----~~~~f-~vv~n~Py~~~~~  108 (245)
T 1yub_A           41 GHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQ--FP----NKQRY-KIVGNIPYHLSTQ  108 (245)
T ss_dssp             SSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTT--CC----CSSEE-EEEEECCSSSCHH
T ss_pred             CHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcC--cc----cCCCc-EEEEeCCccccHH
Confidence            5566667665  4899999999999999998875   2358999999998752  10    12578 67777542211  


Q ss_pred             --H----------HHH----HHHHhcccCCeEEEE
Q 031568           80 --C----------NYH----ERLMKLLKVGGIAVY   98 (157)
Q Consensus        80 --~----------~~~----~~~~~~L~~gG~iv~   98 (157)
                        .          .++    +.+.++|+|||.+.+
T Consensus       109 ~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A          109 IIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             HHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             HHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence              1          122    557789999998754

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=96.56  E-value=0.0066  Score=45.40  Aligned_cols=48  Identities=10%  Similarity=0.072  Sum_probs=38.6

Q ss_pred             CcccHHHHHhhCC--CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH
Q 031568            1 MHLPTKLFMTGNK--ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   53 (157)
Q Consensus         1 ~g~st~~l~~~~~--~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   53 (157)
                      +|.-|..|+...+  +++|+++|+|+.+++.++++.     .++++++++|+.+.
T Consensus        53 ~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           53 LGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF  102 (279)
T ss_dssp             TSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred             cHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence            4666777777533  366999999999999999983     35899999999875

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.51  E-value=0.0078  Score=45.78  Aligned_cols=86  Identities=13%  Similarity=0.208  Sum_probs=57.9

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      +|+.++.+++.. +.+|++++.+++..+.+++    .|.+.-+.....+..+.+...      .+.+|.||....   ..
T Consensus       178 vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~------~g~~d~vid~~g---~~  243 (340)
T 3s2e_A          178 LGHVAVQYARAM-GLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKE------IGGAHGVLVTAV---SP  243 (340)
T ss_dssp             THHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------HSSEEEEEESSC---CH
T ss_pred             HHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHh------CCCCCEEEEeCC---CH
Confidence            355666677665 6799999999999887754    565322222223454444432      247999986643   35


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 031568           81 NYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ..++.+.+.|+++|.++.-.
T Consensus       244 ~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          244 KAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             HHHHHHHHHEEEEEEEEECS
T ss_pred             HHHHHHHHHhccCCEEEEeC
Confidence            67888999999999998743

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.47  E-value=0.022  Score=43.30  Aligned_cols=87  Identities=17%  Similarity=0.102  Sum_probs=60.6

Q ss_pred             ccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568            3 LPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY   82 (157)
Q Consensus         3 ~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~   82 (157)
                      ..++.+++...+.+|++++.+++..+.+++    .|.+.-+.....|..+.+.++.    ....+|.++.+..   ....
T Consensus       177 ~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t----~g~g~d~~~~~~~---~~~~  245 (348)
T 4eez_A          177 NLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT----GGLGVQSAIVCAV---ARIA  245 (348)
T ss_dssp             HHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT----TSSCEEEEEECCS---CHHH
T ss_pred             HHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc----CCCCceEEEEecc---Ccch
Confidence            344556666678999999999998776654    5554345555567766666553    2346888887764   3556


Q ss_pred             HHHHHhcccCCeEEEEec
Q 031568           83 HERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        83 ~~~~~~~L~~gG~iv~~~  100 (157)
                      +..+.+.|+++|.++.-.
T Consensus       246 ~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          246 FEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             HHHHHHTEEEEEEEEECC
T ss_pred             hheeheeecCCceEEEEe
Confidence            888899999999998743

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=96.42  E-value=0.0062  Score=44.71  Aligned_cols=82  Identities=16%  Similarity=0.138  Sum_probs=51.7

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAFVDADKDNYCNY   82 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~~~~~~~~~   82 (157)
                      -|..++.. +..+|+++|+|+.+++.++++    + ..+++++++|+.+. ++..      .+.| .|+.+.+......+
T Consensus        45 lt~~L~~~-~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~~~~------~~~~-~vv~NlPy~i~~~i  111 (249)
T 3ftd_A           45 LTKVLLQH-PLKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPFCSL------GKEL-KVVGNLPYNVASLI  111 (249)
T ss_dssp             HHHHHTTS-CCSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCGGGS------CSSE-EEEEECCTTTHHHH
T ss_pred             HHHHHHHc-CCCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCChhHc------cCCc-EEEEECchhccHHH
Confidence            34444443 468999999999999999987    2 24899999999875 2211      1234 67777664433444


Q ss_pred             HHHHHhc--ccCCeEEEE
Q 031568           83 HERLMKL--LKVGGIAVY   98 (157)
Q Consensus        83 ~~~~~~~--L~~gG~iv~   98 (157)
                      +..+++.  .-+.+++++
T Consensus       112 l~~ll~~~~~~~~~~~m~  129 (249)
T 3ftd_A          112 IENTVYNKDCVPLAVFMV  129 (249)
T ss_dssp             HHHHHHTGGGCSEEEEEE
T ss_pred             HHHHHhcCCCCceEEEEE
Confidence            4444432  234555555

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.40  E-value=0.0087  Score=46.11  Aligned_cols=87  Identities=16%  Similarity=0.199  Sum_probs=55.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+|+.....+|+++|.+++..+.+++    .|.+.-+.....+..+.+.++.     .+.+|+||-...   ...
T Consensus       203 G~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~~-----~gg~D~vid~~g---~~~  270 (371)
T 1f8f_A          203 GLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEIT-----DGGVNFALESTG---SPE  270 (371)
T ss_dssp             HHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-----TSCEEEEEECSC---CHH
T ss_pred             HHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCCEEecCCccCHHHHHHHhc-----CCCCcEEEECCC---CHH
Confidence            4455556665433489999999999888765    3543112222234444444442     337999985443   345


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.|+++|.++.-.
T Consensus       271 ~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          271 ILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             HHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHHHhcCCEEEEeC
Confidence            6888899999999998743

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.38  E-value=0.0094  Score=45.93  Aligned_cols=85  Identities=13%  Similarity=0.031  Sum_probs=55.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+|+...+.+|++++.+++..+.+++    .|.+ .+--...+..+.+.++     ..+.+|+||-...   ...
T Consensus       185 G~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad-~vi~~~~~~~~~v~~~-----~~~g~Dvvid~~g---~~~  251 (363)
T 4dvj_A          185 GSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH-HVIDHSKPLAAEVAAL-----GLGAPAFVFSTTH---TDK  251 (363)
T ss_dssp             HHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS-EEECTTSCHHHHHHTT-----CSCCEEEEEECSC---HHH
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC-EEEeCCCCHHHHHHHh-----cCCCceEEEECCC---chh
Confidence            5555566665468899999999998887754    5643 2211122344444332     1357998875432   345


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       252 ~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          252 HAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             HHHHHHHHSCTTCEEEEC
T ss_pred             hHHHHHHHhcCCCEEEEE
Confidence            778889999999999863

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.31  E-value=0.0056  Score=47.35  Aligned_cols=90  Identities=12%  Similarity=0.089  Sum_probs=57.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|.+.-+.....|..+.+......  ..+.+|+||-...   ...
T Consensus       195 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~--~~gg~Dvvid~~G---~~~  265 (370)
T 4ej6_A          195 GLLTVQLARLAGATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGL--VPGGVDVVIECAG---VAE  265 (370)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSS--STTCEEEEEECSC---CHH
T ss_pred             HHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhc--cCCCCCEEEECCC---CHH
Confidence            5556667766544499999999999887765    455422222234555544431000  1247999985432   355


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.|++||.++.-.
T Consensus       266 ~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          266 TVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             HHHHHHHHEEEEEEEEECS
T ss_pred             HHHHHHHHhccCCEEEEEe
Confidence            7888899999999998743

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.28  E-value=0.0091  Score=41.71  Aligned_cols=85  Identities=12%  Similarity=-0.017  Sum_probs=51.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..++.+++. .+.+|++++.+++..+.+++    .|....+.....+..+.+.+..    ....+|.++....    ..
T Consensus        52 G~~~~~~~~~-~G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~----~~~~~D~vi~~~g----~~  118 (198)
T 1pqw_A           52 GMAAVSIAKM-IGARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELT----DGYGVDVVLNSLA----GE  118 (198)
T ss_dssp             HHHHHHHHHH-HTCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHT----TTCCEEEEEECCC----TH
T ss_pred             HHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH----cCCCEEeeCCcHHHHHHHHHHh----CCCCCeEEEECCc----hH
Confidence            3444445544 36799999999988766543    4543112111223333333321    1246999996553    24


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       119 ~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          119 AIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             HHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHhccCCEEEEE
Confidence            678888999999999873

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.27  E-value=0.011  Score=44.98  Aligned_cols=88  Identities=10%  Similarity=0.062  Sum_probs=58.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+++...+.+|+++|.+++..+.+++    .|.+ .+--...+..+.+.++.    ....+|+||-...   ...
T Consensus       184 G~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~-~~i~~~~~~~~~v~~~t----~g~g~d~v~d~~G---~~~  251 (345)
T 3jv7_A          184 GHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD-AAVKSGAGAADAIRELT----GGQGATAVFDFVG---AQS  251 (345)
T ss_dssp             HHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS-EEEECSTTHHHHHHHHH----GGGCEEEEEESSC---CHH
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC-EEEcCCCcHHHHHHHHh----CCCCCeEEEECCC---CHH
Confidence            5556667766568899999999999887765    5654 22112234444444442    1347999985443   345


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 031568           82 YHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .++.+.+.|+++|.++.-..
T Consensus       252 ~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          252 TIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             HHHHHHHHEEEEEEEEECSC
T ss_pred             HHHHHHHHHhcCCEEEEECC
Confidence            78889999999999987543

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=96.20  E-value=0.013  Score=43.07  Aligned_cols=68  Identities=16%  Similarity=0.181  Sum_probs=45.4

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcCCC
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      +|.-|. ++ ..+..+|+++|+|+.+++.++++++..   ++++++++|+.+. ++....   ..+..|.|+.+.+.
T Consensus        32 ~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~~---~~~~~~~vvsNlPY  100 (252)
T 1qyr_A           32 LAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAE---KMGQPLRVFGNLPY  100 (252)
T ss_dssp             TTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHH---HHTSCEEEEEECCT
T ss_pred             CcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhhc---ccCCceEEEECCCC
Confidence            366666 43 333334999999999999999877542   4899999999874 332210   00235788877654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.15  E-value=0.02  Score=43.84  Aligned_cols=87  Identities=10%  Similarity=0.020  Sum_probs=54.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc---HHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|.+ .  ++..+   ..+....+.+.  ....+|+||-...   
T Consensus       184 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~-~--vi~~~~~~~~~~~~~i~~~--~~~g~D~vid~~g---  251 (356)
T 1pl8_A          184 GMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD-L--VLQISKESPQEIARKVEGQ--LGCKPEVTIECTG---  251 (356)
T ss_dssp             HHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS-E--EEECSSCCHHHHHHHHHHH--HTSCCSEEEECSC---
T ss_pred             HHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC-E--EEcCcccccchHHHHHHHH--hCCCCCEEEECCC---
Confidence            5556667766543499999999998887754    4653 2  23222   22222222110  0246999985543   


Q ss_pred             cHHHHHHHHhcccCCeEEEEec
Q 031568           79 YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ....++.+.+.|+++|.++.-.
T Consensus       252 ~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          252 AEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             CHHHHHHHHHHSCTTCEEEECS
T ss_pred             ChHHHHHHHHHhcCCCEEEEEe
Confidence            3456788889999999998743

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.15  E-value=0.028  Score=42.67  Aligned_cols=89  Identities=16%  Similarity=0.026  Sum_probs=60.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++......+++++.+++..+.+++    +|.+.-+.....|..+....+..    ...+|.|+-...   ...
T Consensus       173 G~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~----~~g~d~v~d~~G---~~~  241 (346)
T 4a2c_A          173 GLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRE----LRFNQLILETAG---VPQ  241 (346)
T ss_dssp             HHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGG----GCSSEEEEECSC---SHH
T ss_pred             chHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcc----cCCccccccccc---ccc
Confidence            4455566667666788999999998887764    56553344444556665555431    345888775443   356


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 031568           82 YHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .++.+.++|+++|.++.-..
T Consensus       242 ~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          242 TVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             HHHHHHHHCCTTCEEEECCC
T ss_pred             hhhhhhheecCCeEEEEEec
Confidence            78888999999999987543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.12  E-value=0.009  Score=45.69  Aligned_cols=88  Identities=15%  Similarity=0.139  Sum_probs=56.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+|+.....+|+++|.+++..+.+++    .|.+.-+.....|..+.+.++.    ....+|+||-....   ..
T Consensus       179 G~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t----~g~g~D~v~d~~g~---~~  247 (352)
T 3fpc_A          179 GLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGATDIINYKNGDIVEQILKAT----DGKGVDKVVIAGGD---VH  247 (352)
T ss_dssp             HHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCCEEECGGGSCHHHHHHHHT----TTCCEEEEEECSSC---TT
T ss_pred             HHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCceEEcCCCcCHHHHHHHHc----CCCCCCEEEECCCC---hH
Confidence            5556666665533489999999998887765    4543212222345555554442    13469999844332   34


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.|+++|.++.-.
T Consensus       248 ~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          248 TFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             HHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHHHhcCCEEEEec
Confidence            6788889999999998744

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.12  E-value=0.019  Score=44.09  Aligned_cols=84  Identities=13%  Similarity=0.073  Sum_probs=54.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +++|++++.+++..+.+++    .|.+.-+.....+..+.+....     ...+|+||-....    .
T Consensus       177 G~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~-----~~g~D~vid~~g~----~  242 (362)
T 2c0c_A          177 GQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS----LGCDRPINYKTEPVGTVLKQEY-----PEGVDVVYESVGG----A  242 (362)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHC-----TTCEEEEEECSCT----H
T ss_pred             HHHHHHHHHhC-CCEEEEEECCHHHHHHHHH----cCCcEEEecCChhHHHHHHHhc-----CCCCCEEEECCCH----H
Confidence            55556666654 6799999999988887765    4543111111234444444331     3469999865442    4


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       243 ~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          243 MFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             HHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHHHhcCCEEEEE
Confidence            678888999999999874

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.11  E-value=0.028  Score=46.75  Aligned_cols=56  Identities=16%  Similarity=0.105  Sum_probs=42.4

Q ss_pred             cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEEe
Q 031568           42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      +++++.||+.+.++++...  ....||.+|+|+..+      ...++|..+.++++|||.+..-
T Consensus       157 ~l~l~~gd~~~~l~~~~~~--~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  218 (676)
T 3ps9_A          157 TLDLWFGDINELTSQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF  218 (676)
T ss_dssp             EEEEEESCHHHHGGGBCGG--GTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred             EEEEecCCHHHHHHhcccc--cCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence            3678999999998875210  135799999998432      2467899999999999999864

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.07  E-value=0.011  Score=44.94  Aligned_cols=86  Identities=20%  Similarity=0.162  Sum_probs=55.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +++|++++.+++..+.+++    .|.+.-+.....+..+.+.+..    ....+|+||-....    .
T Consensus       162 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~~~~~~~~~~~~~~~~~~----~~~g~D~vid~~g~----~  228 (334)
T 3qwb_A          162 GLILNQLLKMK-GAHTIAVASTDEKLKIAKE----YGAEYLINASKEDILRQVLKFT----NGKGVDASFDSVGK----D  228 (334)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHT----TTSCEEEEEECCGG----G
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcEEEeCCCchHHHHHHHHh----CCCCceEEEECCCh----H
Confidence            45555566654 6799999999998887755    4543112222234445444442    13469999865542    4


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.|+++|.++.-.
T Consensus       229 ~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          229 TFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             GHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHHhccCCEEEEEc
Confidence            5778889999999998743

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.04  E-value=0.015  Score=44.60  Aligned_cols=85  Identities=14%  Similarity=0.057  Sum_probs=55.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +++|++++.+++..+.+++    .|.+.-+.....+..+.+....     ...+|+||-....    .
T Consensus       181 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~-----~~g~Dvvid~~g~----~  246 (353)
T 4dup_A          181 GTTAIQLARAF-GAEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAET-----GQGVDIILDMIGA----A  246 (353)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH-----SSCEEEEEESCCG----G
T ss_pred             HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHh-----CCCceEEEECCCH----H
Confidence            44555566654 7799999999999888765    3543222222334444444432     3579999865543    2


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.|+++|.++.-.
T Consensus       247 ~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          247 YFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             GHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHHhccCCEEEEEE
Confidence            5677889999999998743

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.00  E-value=0.013  Score=45.34  Aligned_cols=88  Identities=22%  Similarity=0.269  Sum_probs=57.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEE--EccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~--~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+|+.....+|+++|.+++..+.++    +.|.+.-+...  ..+..+.+.++.     .+.+|+||-...   .
T Consensus       206 G~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~i~~~~-----~gg~D~vid~~g---~  273 (378)
T 3uko_A          206 GLAVAEGAKTAGASRIIGIDIDSKKYETAK----KFGVNEFVNPKDHDKPIQEVIVDLT-----DGGVDYSFECIG---N  273 (378)
T ss_dssp             HHHHHHHHHHHTCSCEEEECSCTTHHHHHH----TTTCCEEECGGGCSSCHHHHHHHHT-----TSCBSEEEECSC---C
T ss_pred             HHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCcEEEccccCchhHHHHHHHhc-----CCCCCEEEECCC---C
Confidence            555666666554448999999999988775    45654212111  234555555542     347999985443   3


Q ss_pred             HHHHHHHHhcccCC-eEEEEecc
Q 031568           80 CNYHERLMKLLKVG-GIAVYDNT  101 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~~~  101 (157)
                      ...++.+.+.|++| |.++.-..
T Consensus       274 ~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          274 VSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             HHHHHHHHHHhhccCCEEEEEcc
Confidence            56788899999996 99987443

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.96  E-value=0.026  Score=43.47  Aligned_cols=87  Identities=21%  Similarity=0.210  Sum_probs=55.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|.+.-+....  .+..+.+.++.     .+.+|+||-...   .
T Consensus       208 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~v~~~~-----~~g~Dvvid~~G---~  275 (376)
T 1e3i_A          208 GLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT-----AGGVDYSLDCAG---T  275 (376)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH-----TSCBSEEEESSC---C
T ss_pred             HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCcEEEccccccchHHHHHHHHh-----CCCccEEEECCC---C
Confidence            5556666766543489999999999887754    45531111111  23445454442     347999985433   3


Q ss_pred             HHHHHHHHhcccCC-eEEEEec
Q 031568           80 CNYHERLMKLLKVG-GIAVYDN  100 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~~  100 (157)
                      ...++.+.+.|+++ |.++.-.
T Consensus       276 ~~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          276 AQTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             HHHHHHHHHTBCTTTCEEEECC
T ss_pred             HHHHHHHHHHhhcCCCEEEEEC
Confidence            45678889999999 9998643

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.90  E-value=0.03  Score=43.14  Aligned_cols=87  Identities=17%  Similarity=0.230  Sum_probs=55.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|.+.-+....  .+..+.+.++.     .+.+|+||-...   .
T Consensus       205 G~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~-----~~g~D~vid~~g---~  272 (374)
T 1cdo_A          205 GLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKMT-----NGGVDFSLECVG---N  272 (374)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHHH-----TSCBSEEEECSC---C
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCceEEeccccchhHHHHHHHHh-----CCCCCEEEECCC---C
Confidence            4555666666533489999999999887764    45531111111  23444454442     347999985443   2


Q ss_pred             HHHHHHHHhcccCC-eEEEEec
Q 031568           80 CNYHERLMKLLKVG-GIAVYDN  100 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~~  100 (157)
                      ...++.+.+.|+++ |.++.-.
T Consensus       273 ~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          273 VGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             HHHHHHHHHTBCTTTCEEEECS
T ss_pred             HHHHHHHHHHhhcCCcEEEEEc
Confidence            45678889999999 9998743

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.85  E-value=0.012  Score=44.40  Aligned_cols=86  Identities=7%  Similarity=-0.002  Sum_probs=55.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+++.. +++|++++.+++..+.+++    .|.+.-+.....+..+.+.+..    ....+|+||-....    .
T Consensus       154 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~----~~~g~Dvvid~~g~----~  220 (325)
T 3jyn_A          154 GSLACQWAKAL-GAKLIGTVSSPEKAAHAKA----LGAWETIDYSHEDVAKRVLELT----DGKKCPVVYDGVGQ----D  220 (325)
T ss_dssp             HHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TTCCEEEEEESSCG----G
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHh----CCCCceEEEECCCh----H
Confidence            45555566553 6799999999999887764    3543222222234444444432    13479998865542    3


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.|+++|.++.-.
T Consensus       221 ~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          221 TWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             GHHHHHTTEEEEEEEEECC
T ss_pred             HHHHHHHHhcCCCEEEEEe
Confidence            5778889999999998743

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.84  E-value=0.024  Score=42.92  Aligned_cols=85  Identities=13%  Similarity=0.133  Sum_probs=53.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +.+|++++.+++..+.+++    .|...-+.....+..+.+.+..    ....+|+||-....    .
T Consensus       159 G~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~i~~~~----~~~~~d~vi~~~g~----~  225 (333)
T 1wly_A          159 GHIMVPWARHL-GATVIGTVSTEEKAETARK----LGCHHTINYSTQDFAEVVREIT----GGKGVDVVYDSIGK----D  225 (333)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH----TTCCEEEEEECSCT----T
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHHHHHHHHHh----CCCCCeEEEECCcH----H
Confidence            55555566654 6799999999988887765    3432112111233334443332    13469999866543    4


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       226 ~~~~~~~~l~~~G~iv~~  243 (333)
T 1wly_A          226 TLQKSLDCLRPRGMCAAY  243 (333)
T ss_dssp             THHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHhhccCCEEEEE
Confidence            567888999999999874

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.73  E-value=0.029  Score=42.46  Aligned_cols=84  Identities=11%  Similarity=0.062  Sum_probs=53.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..++.+++.. +.+|++++.+++..+.+++    .|....+.... .+..+.+....     .+.+|+++.....    
T Consensus       159 G~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~-----~~~~d~vi~~~g~----  224 (333)
T 1v3u_A          159 GSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKAS-----PDGYDCYFDNVGG----  224 (333)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHHC-----TTCEEEEEESSCH----
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCcEEEecCCHHHHHHHHHHHh-----CCCCeEEEECCCh----
Confidence            44455555553 6799999999988877633    35421122112 34445554442     3479999876642    


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++.+.+.|+++|.++.-
T Consensus       225 ~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          225 EFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             HHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHhcCCEEEEE
Confidence            3578888999999999864

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.72  E-value=0.014  Score=45.17  Aligned_cols=85  Identities=12%  Similarity=0.099  Sum_probs=53.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc------cHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES------EALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~------d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|.+ .  ++..      |..+.+.++.    ....+|+||-...
T Consensus       208 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~-~--vi~~~~~~~~~~~~~v~~~~----~g~g~Dvvid~~g  276 (380)
T 1vj0_A          208 GLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD-L--TLNRRETSVEERRKAIMDIT----HGRGADFILEATG  276 (380)
T ss_dssp             HHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS-E--EEETTTSCHHHHHHHHHHHT----TTSCEEEEEECSS
T ss_pred             HHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc-E--EEeccccCcchHHHHHHHHh----CCCCCcEEEECCC
Confidence            5556666766533699999999998887763    5653 2  2322      2233333331    1236999985443


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEec
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      .   ...++.+.+.|+++|.++.-.
T Consensus       277 ~---~~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          277 D---SRALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             C---TTHHHHHHHHEEEEEEEEECC
T ss_pred             C---HHHHHHHHHHHhcCCEEEEEe
Confidence            2   335778889999999998743

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.72  E-value=0.016  Score=44.14  Aligned_cols=86  Identities=20%  Similarity=0.091  Sum_probs=54.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCC-CceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE-GSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~-~~fD~I~iD~~~~~~~   80 (157)
                      |+.++.+++...+.+|++++.+++..+.+++    .|.+.-+.....+..+.+..+.     . +.+|+||-...   ..
T Consensus       184 G~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~-----~~~~~d~vi~~~g---~~  251 (347)
T 1jvb_A          184 GTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGADYVINASMQDPLAEIRRIT-----ESKGVDAVIDLNN---SE  251 (347)
T ss_dssp             HHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-----TTSCEEEEEESCC---CH
T ss_pred             HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCEEecCCCccHHHHHHHHh-----cCCCceEEEECCC---CH
Confidence            4445555655437799999999998887754    3432111111123333344432     2 57999986654   24


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++.+.+.|+++|.++.-
T Consensus       252 ~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          252 KTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             HHHTTGGGGEEEEEEEEEC
T ss_pred             HHHHHHHHHHhcCCEEEEE
Confidence            4678888999999999874

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.71  E-value=0.028  Score=43.31  Aligned_cols=87  Identities=14%  Similarity=0.177  Sum_probs=55.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|.+.-+....  .+..+.+.++.     .+.+|+||--..   .
T Consensus       204 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~t-----~gg~Dvvid~~g---~  271 (373)
T 1p0f_A          204 GFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEKT-----NGGVDYAVECAG---R  271 (373)
T ss_dssp             HHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHT-----TSCBSEEEECSC---C
T ss_pred             HHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEecccccchHHHHHHHHh-----CCCCCEEEECCC---C
Confidence            5555666665533489999999999887764    56531111111  23445454442     347999985433   3


Q ss_pred             HHHHHHHHhcccCC-eEEEEec
Q 031568           80 CNYHERLMKLLKVG-GIAVYDN  100 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~~  100 (157)
                      ...++.+.+.|+++ |.++.-.
T Consensus       272 ~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          272 IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             HHHHHHHHHTBCTTTCEEEECC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEc
Confidence            45678889999999 9998643

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.70  E-value=0.034  Score=42.39  Aligned_cols=83  Identities=17%  Similarity=0.130  Sum_probs=54.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +++|++++.+++..+.+++    .|.+ .+--...+..+.+.++.     .+.+|+||-...   ...
T Consensus       164 G~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~-----~~g~Dvv~d~~g---~~~  229 (346)
T 3fbg_A          164 GSIATQIAKAY-GLRVITTASRNETIEWTKK----MGAD-IVLNHKESLLNQFKTQG-----IELVDYVFCTFN---TDM  229 (346)
T ss_dssp             HHHHHHHHHHT-TCEEEEECCSHHHHHHHHH----HTCS-EEECTTSCHHHHHHHHT-----CCCEEEEEESSC---HHH
T ss_pred             HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCc-EEEECCccHHHHHHHhC-----CCCccEEEECCC---chH
Confidence            45555566654 6799999999998888776    3543 22111234444444441     457999885433   345


Q ss_pred             HHHHHHhcccCCeEEEE
Q 031568           82 YHERLMKLLKVGGIAVY   98 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~   98 (157)
                      .++.+.+.|+++|.++.
T Consensus       230 ~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          230 YYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             HHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHhccCCEEEE
Confidence            67888999999999975

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.67  E-value=0.028  Score=42.82  Aligned_cols=85  Identities=9%  Similarity=0.021  Sum_probs=54.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +++|++++.+++..+.+++    .|.+.-+... .+..+.+.+..    ....+|+||-....    .
T Consensus       173 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~v~~~~-~~~~~~v~~~~----~~~g~Dvvid~~g~----~  238 (342)
T 4eye_A          173 GTAAIQIAKGM-GAKVIAVVNRTAATEFVKS----VGADIVLPLE-EGWAKAVREAT----GGAGVDMVVDPIGG----P  238 (342)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSEEEESS-TTHHHHHHHHT----TTSCEEEEEESCC------
T ss_pred             HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcEEecCc-hhHHHHHHHHh----CCCCceEEEECCch----h
Confidence            44555566654 6799999999999887776    3543212222 44444444442    13369999865543    2


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.|+++|.++.-.
T Consensus       239 ~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          239 AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             CHHHHHHTEEEEEEEEEC-
T ss_pred             HHHHHHHhhcCCCEEEEEE
Confidence            4677889999999998743

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.65  E-value=0.037  Score=43.00  Aligned_cols=90  Identities=14%  Similarity=0.075  Sum_probs=56.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc-HHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |+.++.+|+.....+|+++|.+++..+.+++    .|.+ .+.....+ ..+.+.++.    ....+|+||-......  
T Consensus       198 G~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa~-~i~~~~~~~~~~~v~~~t----~g~g~Dvvid~~G~~~~~  268 (398)
T 1kol_A          198 GLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGFE-IADLSLDTPLHEQIAALL----GEPEVDCAVDAVGFEARG  268 (398)
T ss_dssp             HHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCE-EEETTSSSCHHHHHHHHH----SSSCEEEEEECCCTTCBC
T ss_pred             HHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCCc-EEccCCcchHHHHHHHHh----CCCCCCEEEECCCCcccc
Confidence            5556667766544489999999999888764    4642 22211122 344444432    1346999985443221  


Q ss_pred             ----------cHHHHHHHHhcccCCeEEEEec
Q 031568           79 ----------YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ----------~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                                ....++.+.+.|+++|.++.-.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          269 HGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             SSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             cccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence                      1246888899999999998743

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.64  E-value=0.016  Score=45.20  Aligned_cols=89  Identities=16%  Similarity=0.088  Sum_probs=55.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |+.++.+|+.....+|+++|.+++..+.+++    .|. +-+.....|. .+.+..+.    ....+|+||-......  
T Consensus       198 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~~~~~~----~g~g~Dvvid~~g~~~~~  268 (398)
T 2dph_A          198 GRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF-ETIDLRNSAPLRDQIDQIL----GKPEVDCGVDAVGFEAHG  268 (398)
T ss_dssp             HHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC-EEEETTSSSCHHHHHHHHH----SSSCEEEEEECSCTTCBC
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC-cEEcCCCcchHHHHHHHHh----CCCCCCEEEECCCCcccc
Confidence            5555666665533499999999998877654    454 2222222333 44444442    1236999985443221  


Q ss_pred             ---------cHHHHHHHHhcccCCeEEEEe
Q 031568           79 ---------YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ---------~~~~~~~~~~~L~~gG~iv~~   99 (157)
                               ....++.+.+.|+++|.++.-
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          269 LGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             SGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             ccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence                     124688889999999999863

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.64  E-value=0.022  Score=43.35  Aligned_cols=86  Identities=15%  Similarity=-0.006  Sum_probs=53.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +++|++++.+++..+.+++    .|.+.-+.....+..+.+.++.    ....+|+||-....   ..
T Consensus       158 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lga~~~~~~~~~~~~~~~~~~~----~~~g~Dvvid~~g~---~~  225 (340)
T 3gms_A          158 GHLFAQLSQIL-NFRLIAVTRNNKHTEELLR----LGAAYVIDTSTAPLYETVMELT----NGIGADAAIDSIGG---PD  225 (340)
T ss_dssp             HHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TTSCEEEEEESSCH---HH
T ss_pred             HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----CCCcEEEeCCcccHHHHHHHHh----CCCCCcEEEECCCC---hh
Confidence            44455555543 6799999999999888876    3543222222234445444442    13479999865442   22


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                       .....+.|+++|.++.-.
T Consensus       226 -~~~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          226 -GNELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             -HHHHHHTEEEEEEEEECC
T ss_pred             -HHHHHHHhcCCCEEEEEe
Confidence             334458999999998744

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.64  E-value=0.037  Score=42.61  Aligned_cols=87  Identities=15%  Similarity=0.234  Sum_probs=55.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|.+.-+....  .+..+.+.++.     .+.+|+||-...   .
T Consensus       204 G~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~-----~~g~D~vid~~g---~  271 (374)
T 2jhf_A          204 GLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGATECVNPQDYKKPIQEVLTEMS-----NGGVDFSFEVIG---R  271 (374)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHT-----TSCBSEEEECSC---C
T ss_pred             HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCceEecccccchhHHHHHHHHh-----CCCCcEEEECCC---C
Confidence            4555566666533489999999999887754    45531111111  23444454442     347999985443   2


Q ss_pred             HHHHHHHHhcccCC-eEEEEec
Q 031568           80 CNYHERLMKLLKVG-GIAVYDN  100 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~~  100 (157)
                      ...++.+.+.|+++ |.++.-.
T Consensus       272 ~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          272 LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             HHHHHHHHHHBCTTTCEEEECS
T ss_pred             HHHHHHHHHHhhcCCcEEEEec
Confidence            45678889999999 9998743

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.60  E-value=0.033  Score=43.48  Aligned_cols=89  Identities=7%  Similarity=0.030  Sum_probs=53.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|.+.-+.....|..+.+.++.    ....+|+||-.....  ..
T Consensus       226 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~i~~~t----~g~g~D~vid~~g~~--~~  295 (404)
T 3ip1_A          226 GLAAVAILKHAGASKVILSEPSEVRRNLAKE----LGADHVIDPTKENFVEAVLDYT----NGLGAKLFLEATGVP--QL  295 (404)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSEEECTTTSCHHHHHHHHT----TTCCCSEEEECSSCH--HH
T ss_pred             HHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCEEEcCCCCCHHHHHHHHh----CCCCCCEEEECCCCc--HH
Confidence            5556667766544499999999999888865    3543112222245555555442    134699998544322  12


Q ss_pred             HHHHHHhcc----cCCeEEEEec
Q 031568           82 YHERLMKLL----KVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L----~~gG~iv~~~  100 (157)
                      .++.+.+.|    +++|.++.-.
T Consensus       296 ~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          296 VWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             HHHHHHHHHHHCSCCCCEEEECS
T ss_pred             HHHHHHHHHHhccCCCcEEEEeC
Confidence            344444555    9999998743

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.57  E-value=0.045  Score=41.69  Aligned_cols=86  Identities=13%  Similarity=0.068  Sum_probs=54.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEE-EccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..++.+++.. +.+|++++.+++..+.+++    .|...-+.+. ..+..+.+.+..     .+.+|+|+....   ..
T Consensus       183 G~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~-----~~~~D~vi~~~g---~~  249 (347)
T 2hcy_A          183 GSLAVQYAKAM-GYRVLGIDGGEGKEELFRS----IGGEVFIDFTKEKDIVGAVLKAT-----DGGAHGVINVSV---SE  249 (347)
T ss_dssp             HHHHHHHHHHT-TCEEEEEECSTTHHHHHHH----TTCCEEEETTTCSCHHHHHHHHH-----TSCEEEEEECSS---CH
T ss_pred             HHHHHHHHHHC-CCcEEEEcCCHHHHHHHHH----cCCceEEecCccHhHHHHHHHHh-----CCCCCEEEECCC---cH
Confidence            44455555554 6799999999988776654    4543112111 234444554442     237999987654   34


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 031568           81 NYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ..++.+.+.|+++|.++.-.
T Consensus       250 ~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          250 AAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             HHHHHHTTSEEEEEEEEECC
T ss_pred             HHHHHHHHHHhcCCEEEEEe
Confidence            57888899999999998743

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.46  E-value=0.04  Score=42.36  Aligned_cols=87  Identities=18%  Similarity=0.250  Sum_probs=55.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+|+.....+|++++.+++..+.+++    .|.+.-+....  .+..+.+.++.     .+.+|+||-...   .
T Consensus       203 G~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~v~~~~-----~~g~D~vid~~g---~  270 (373)
T 2fzw_A          203 GLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEMT-----DGGVDYSFECIG---N  270 (373)
T ss_dssp             HHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHHT-----TSCBSEEEECSC---C
T ss_pred             HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEeccccccccHHHHHHHHh-----CCCCCEEEECCC---c
Confidence            4555566665533489999999999888764    35431111111  23445454442     347999985443   2


Q ss_pred             HHHHHHHHhcccCC-eEEEEec
Q 031568           80 CNYHERLMKLLKVG-GIAVYDN  100 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~~  100 (157)
                      ...++.+.+.|+++ |.++.-.
T Consensus       271 ~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          271 VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             HHHHHHHHHTBCTTTCEEEECS
T ss_pred             HHHHHHHHHhhccCCcEEEEEe
Confidence            45678889999999 9998743

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.45  E-value=0.046  Score=41.36  Aligned_cols=85  Identities=11%  Similarity=0.071  Sum_probs=54.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+++.. +.+|++++.+++..+.+.+   +.|...-+.....+..+.+.+..     .+.+|+||-...    ..
T Consensus       163 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~-----~~~~d~vi~~~g----~~  229 (336)
T 4b7c_A          163 GSVAGQIARLK-GCRVVGIAGGAEKCRFLVE---ELGFDGAIDYKNEDLAAGLKREC-----PKGIDVFFDNVG----GE  229 (336)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH---TTCCSEEEETTTSCHHHHHHHHC-----TTCEEEEEESSC----HH
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---HcCCCEEEECCCHHHHHHHHHhc-----CCCceEEEECCC----cc
Confidence            44455555554 6799999999988776632   34553212222234444444432     357999886554    24


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       230 ~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          230 ILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             HHHHHHTTEEEEEEEEEC
T ss_pred             hHHHHHHHHhhCCEEEEE
Confidence            688889999999999874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.41  E-value=0.037  Score=42.05  Aligned_cols=84  Identities=19%  Similarity=0.229  Sum_probs=54.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +.+|++++.+++..+.+++    .|.+.-+.....+..+.+.+.      .+.+|+||-...   ...
T Consensus       177 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~~d~~~~~~~~~~~~~------~~~~d~vid~~g---~~~  242 (339)
T 1rjw_A          177 GHVAVQYAKAM-GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK------VGGVHAAVVTAV---SKP  242 (339)
T ss_dssp             HHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH------HSSEEEEEESSC---CHH
T ss_pred             HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----CCCCEEecCCCccHHHHHHHH------hCCCCEEEECCC---CHH
Confidence            55566666654 6799999999998887754    454311111112343444333      146999986543   245


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       243 ~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          243 AFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             HHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHHhhcCCEEEEe
Confidence            678888999999999864

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.37  E-value=0.02  Score=44.03  Aligned_cols=86  Identities=15%  Similarity=0.075  Sum_probs=55.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |+.++.+++.. +++|++++.+++..+.+++    .|.+.-+. .. .+..+.+..+.    ....+|+||-....    
T Consensus       202 G~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~-~~~~~~~~~v~~~~----~g~g~D~vid~~g~----  267 (363)
T 3uog_A          202 ALFGLQIAKAT-GAEVIVTSSSREKLDRAFA----LGADHGIN-RLEEDWVERVYALT----GDRGADHILEIAGG----  267 (363)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCSEEEE-TTTSCHHHHHHHHH----TTCCEEEEEEETTS----
T ss_pred             HHHHHHHHHHc-CCEEEEEecCchhHHHHHH----cCCCEEEc-CCcccHHHHHHHHh----CCCCceEEEECCCh----
Confidence            55566666654 6799999999998887755    45532222 11 34445454443    13479999865542    


Q ss_pred             HHHHHHHhcccCCeEEEEecc
Q 031568           81 NYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      ..++.+.+.|+++|.++.-..
T Consensus       268 ~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          268 AGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             SCHHHHHHHEEEEEEEEEECC
T ss_pred             HHHHHHHHHhhcCCEEEEEec
Confidence            246678889999999987543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.31  E-value=0.024  Score=43.20  Aligned_cols=85  Identities=19%  Similarity=0.144  Sum_probs=54.4

Q ss_pred             cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+|+.. |+.+|++++.+++..+.+++    .|.+ .  ++..+- .+...++.    ....+|+||-...   .
T Consensus       183 G~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~-~--vi~~~~~~~~~~~~~----~g~g~D~vid~~g---~  248 (344)
T 2h6e_A          183 AVYTIQILKALMKNITIVGISRSKKHRDFALE----LGAD-Y--VSEMKDAESLINKLT----DGLGASIAIDLVG---T  248 (344)
T ss_dssp             HHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCS-E--EECHHHHHHHHHHHH----TTCCEEEEEESSC---C
T ss_pred             HHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCC-E--EeccccchHHHHHhh----cCCCccEEEECCC---C
Confidence            45555566643 47899999999999887765    3543 2  232111 23333332    1337999985543   2


Q ss_pred             HHHHHHHHhcccCCeEEEEec
Q 031568           80 CNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ...++.+.+.|+++|.++.-.
T Consensus       249 ~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          249 EETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             HHHHHHHHHHEEEEEEEEECC
T ss_pred             hHHHHHHHHHhhcCCEEEEeC
Confidence            446788899999999998743

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.28  E-value=0.025  Score=42.71  Aligned_cols=85  Identities=15%  Similarity=0.129  Sum_probs=52.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +.+|++++.+++..+.+++    .|...-+.....+..+.+.+..    ....+|++|-...    ..
T Consensus       154 G~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~~~~D~vi~~~g----~~  220 (327)
T 1qor_A          154 GLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEIT----GGKKVRVVYDSVG----RD  220 (327)
T ss_dssp             HHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TTCCEEEEEECSC----GG
T ss_pred             HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCccHHHHHHHHh----CCCCceEEEECCc----hH
Confidence            44455555543 6799999999988887765    3432111111223333333331    1346999987665    34


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       221 ~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          221 TWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             GHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHhcCCCEEEEE
Confidence            577888999999999874

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.28  E-value=0.028  Score=42.82  Aligned_cols=86  Identities=12%  Similarity=0.031  Sum_probs=55.0

Q ss_pred             cccHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |+.++.+++.. +. +|++++.+++..+.+++    .|.+.-+.....+..+.+.++.    ....+|+||-...   ..
T Consensus       180 G~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~----~g~g~D~vid~~g---~~  247 (348)
T 2d8a_A          180 GLLGIAVAKAS-GAYPVIVSEPSDFRRELAKK----VGADYVINPFEEDVVKEVMDIT----DGNGVDVFLEFSG---AP  247 (348)
T ss_dssp             HHHHHHHHHHT-TCCSEEEECSCHHHHHHHHH----HTCSEEECTTTSCHHHHHHHHT----TTSCEEEEEECSC---CH
T ss_pred             HHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEECCCCcCHHHHHHHHc----CCCCCCEEEECCC---CH
Confidence            55566666665 55 89999999998887764    3442111111234444444432    1346999985543   34


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++.+.+.|+++|.++.-
T Consensus       248 ~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          248 KALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             HHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHHHHhcCCEEEEE
Confidence            5678888999999999874

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.28  E-value=0.031  Score=42.63  Aligned_cols=86  Identities=7%  Similarity=-0.053  Sum_probs=54.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +++|++++.+++..+.+++    .|.+.-+.....+..+.+.++..    ...+|+||-...    ..
T Consensus       178 G~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~----~~g~D~vid~~g----~~  244 (349)
T 3pi7_A          178 CKLIIGLAKEE-GFRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEATLREVMK----AEQPRIFLDAVT----GP  244 (349)
T ss_dssp             HHHHHHHHHHH-TCEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHHHHHHHHH----HHCCCEEEESSC----HH
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHHHHHHHhc----CCCCcEEEECCC----Ch
Confidence            44555566654 6799999999999888764    45432222222344444444321    236999985443    22


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.|+++|.++.-.
T Consensus       245 ~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          245 LASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             HHHHHHHHSCTTCEEEECC
T ss_pred             hHHHHHhhhcCCCEEEEEe
Confidence            3577889999999998743

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.26  E-value=0.06  Score=41.06  Aligned_cols=89  Identities=10%  Similarity=0.006  Sum_probs=53.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |+.++.+++.. +.+|++++.+++..+.+++    .|.+.-+.... .+..+.+.+.... .....+|+||-...   ..
T Consensus       181 G~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~-~~g~g~D~vid~~g---~~  251 (352)
T 1e3j_A          181 GLVSVLAAKAY-GAFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRS-AIGDLPNVTIDCSG---NE  251 (352)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHH-HSSSCCSEEEECSC---CH
T ss_pred             HHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhcc-ccCCCCCEEEECCC---CH
Confidence            44555566654 6679999999998887754    46531122111 3333333332100 00246999985543   24


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++.+.+.|+++|.++.-
T Consensus       252 ~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          252 KCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             HHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHHHHHHHhcCCEEEEE
Confidence            4678888999999999874

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.22  E-value=0.064  Score=40.95  Aligned_cols=85  Identities=12%  Similarity=0.058  Sum_probs=53.8

Q ss_pred             cccHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |+.++.+++.. +. +|++++.+++..+.+++   +.|....+.....+..+.+.+..     .+.+|++|-...    .
T Consensus       174 G~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~---~~g~~~~~d~~~~~~~~~~~~~~-----~~~~d~vi~~~G----~  240 (357)
T 2zb4_A          174 GSVAGQIGHFL-GCSRVVGICGTHEKCILLTS---ELGFDAAINYKKDNVAEQLRESC-----PAGVDVYFDNVG----G  240 (357)
T ss_dssp             HHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH---TSCCSEEEETTTSCHHHHHHHHC-----TTCEEEEEESCC----H
T ss_pred             HHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHH---HcCCceEEecCchHHHHHHHHhc-----CCCCCEEEECCC----H
Confidence            44555566554 56 99999999887776654   24543112111223444444331     236999986654    2


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++.+.+.|+++|.++.-
T Consensus       241 ~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          241 NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             HHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHHhccCcEEEEE
Confidence            5688889999999999874

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.07  E-value=0.038  Score=42.05  Aligned_cols=85  Identities=13%  Similarity=0.115  Sum_probs=53.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +.+|++++.+++..+.+++    .|...-+.....+..+.+.+..    ....+|+||-... .   .
T Consensus       180 G~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~----~~~~~d~vi~~~g-~---~  246 (343)
T 2eih_A          180 SVAAIQIAKLF-GARVIATAGSEDKLRRAKA----LGADETVNYTHPDWPKEVRRLT----GGKGADKVVDHTG-A---L  246 (343)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSEEEETTSTTHHHHHHHHT----TTTCEEEEEESSC-S---S
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHh----CCCCceEEEECCC-H---H
Confidence            55555566654 6799999999998888764    3543111111223334444332    1247999987665 2   2


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       247 ~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          247 YFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             SHHHHHHHEEEEEEEEES
T ss_pred             HHHHHHHhhccCCEEEEE
Confidence            467778899999999874

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.96  E-value=0.093  Score=40.12  Aligned_cols=86  Identities=12%  Similarity=0.001  Sum_probs=55.3

Q ss_pred             cccHHHHHhhCCCcE-EEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-----ccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTGNKILQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-----~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |+.+..+|+.. +++ |++++.+++..+.+++. .    ..-+....     .|..+.+..+.    ....+|+||-...
T Consensus       192 G~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~~t----~g~g~Dvvid~~g  261 (363)
T 3m6i_A          192 GLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVESF----GGIEPAVALECTG  261 (363)
T ss_dssp             HHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHHHT----SSCCCSEEEECSC
T ss_pred             HHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHHHh----CCCCCCEEEECCC
Confidence            55556666665 554 99999999999998875 2    11233321     23333343332    1347999985443


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEec
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                         ....++.+.+.|+++|.++.-.
T Consensus       262 ---~~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          262 ---VESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             ---CHHHHHHHHHHSCTTCEEEECC
T ss_pred             ---ChHHHHHHHHHhcCCCEEEEEc
Confidence               3456788899999999998743

>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}

Probab=94.80  E-value=0.42  Score=30.09  Aligned_cols=70  Identities=13%  Similarity=0.019  Sum_probs=50.4

Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568           12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL   89 (157)
Q Consensus        12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~   89 (157)
                      .++.+|..+|-++......++.++..|.  .+. ...+..+.+..+.     ..++|+|++|...+  ...++++.+.+.
T Consensus         5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~   76 (130)
T 3eod_A            5 LVGKQILIVEDEQVFRSLLDSWFSSLGA--TTV-LAADGVDALELLG-----GFTPDLMICDIAMPRMNGLKLLEHIRNR   76 (130)
T ss_dssp             TTTCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHT-----TCCCSEEEECCC-----CHHHHHHHHHT
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHHhCCc--eEE-EeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence            3577999999999999999999998875  343 4677887777663     56799999997533  234556655543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.78  E-value=0.062  Score=40.20  Aligned_cols=49  Identities=6%  Similarity=-0.010  Sum_probs=35.3

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   50 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~   50 (157)
                      +|-.|+.+++..-+.+++++|+++++++.|+++++.......++ +.+|+
T Consensus       244 ~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~~~~~~~~-~~~~~  292 (297)
T 2zig_A          244 AGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAREVPGFSLE-VLDGA  292 (297)
T ss_dssp             CTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEE-EECC-
T ss_pred             CCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHhccccchh-hCCcc
Confidence            46667776665568899999999999999999998764333343 33444

>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}

Probab=94.77  E-value=0.42  Score=30.40  Aligned_cols=78  Identities=12%  Similarity=-0.066  Sum_probs=54.1

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---ccHHHHHHHHhc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---NYCNYHERLMKL   89 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~~~~~~~~~~~~   89 (157)
                      ...+|..+|-++...+..+..++..|+  .+.....+..+.+..+.     ...+|+|++|...+   ...++++.+.+.
T Consensus         8 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~-----~~~~dlii~d~~~~~~~~g~~~~~~l~~~   80 (140)
T 3cg0_A            8 DLPGVLIVEDGRLAAATLRIQLESLGY--DVLGVFDNGEEAVRCAP-----DLRPDIALVDIMLCGALDGVETAARLAAG   80 (140)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEESSCCSSSCHHHHHHHHHHH
T ss_pred             CCceEEEEECCHHHHHHHHHHHHHCCC--eeEEEECCHHHHHHHHH-----hCCCCEEEEecCCCCCCCHHHHHHHHHhC
Confidence            567899999999999999999998775  35434677777776554     34699999996542   334556666554


Q ss_pred             ccCCeEEEE
Q 031568           90 LKVGGIAVY   98 (157)
Q Consensus        90 L~~gG~iv~   98 (157)
                       ..--++++
T Consensus        81 -~~~~ii~l   88 (140)
T 3cg0_A           81 -CNLPIIFI   88 (140)
T ss_dssp             -SCCCEEEE
T ss_pred             -CCCCEEEE
Confidence             33334444

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=94.74  E-value=0.083  Score=40.19  Aligned_cols=82  Identities=12%  Similarity=0.007  Sum_probs=53.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +++|+++ .+++..+.+++    .|... +. ...+..+.+....    ....+|+||-....    .
T Consensus       164 G~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~~~~~~~----~~~g~D~vid~~g~----~  227 (343)
T 3gaz_A          164 GHVAIQIALAR-GARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPEDYAAEHT----AGQGFDLVYDTLGG----P  227 (343)
T ss_dssp             HHHHHHHHHHT-TCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHHHHHHHH----TTSCEEEEEESSCT----H
T ss_pred             HHHHHHHHHHC-CCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHHHHHHHh----cCCCceEEEECCCc----H
Confidence            45555566654 6799999 88888776654    45542 43 3344555444432    13579998855442    4


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       228 ~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          228 VLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             HHHHHHHHEEEEEEEEES
T ss_pred             HHHHHHHHHhcCCeEEEE
Confidence            678888999999999873

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.70  E-value=0.079  Score=40.49  Aligned_cols=86  Identities=8%  Similarity=0.020  Sum_probs=53.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +.+|++++.+++..+.+++    .|.+.-+.....+..+.+.+..    ....+|++|-.....    
T Consensus       176 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~~~~d~vi~~~G~~----  242 (354)
T 2j8z_A          176 GTAAIQLTRMA-GAIPLVTAGSQKKLQMAEK----LGAAAGFNYKKEDFSEATLKFT----KGAGVNLILDCIGGS----  242 (354)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TTSCEEEEEESSCGG----
T ss_pred             HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChHHHHHHHHHh----cCCCceEEEECCCch----
Confidence            44455555554 6799999999998887743    3432111111223334443332    134699998766532    


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.|+++|.++.-.
T Consensus       243 ~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          243 YWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             GHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHhccCCCEEEEEe
Confidence            4667788999999998743

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.60  E-value=0.12  Score=39.10  Aligned_cols=85  Identities=13%  Similarity=0.118  Sum_probs=53.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..++.+++.. +.+|++++.+++..+.+++   +.|...-+.... .+..+.+....     .+.+|+||-...    .
T Consensus       169 G~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~---~~g~~~~~d~~~~~~~~~~~~~~~-----~~~~d~vi~~~g----~  235 (345)
T 2j3h_A          169 GQLVGQLAKMM-GCYVVGSAGSKEKVDLLKT---KFGFDDAFNYKEESDLTAALKRCF-----PNGIDIYFENVG----G  235 (345)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH---TSCCSEEEETTSCSCSHHHHHHHC-----TTCEEEEEESSC----H
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---HcCCceEEecCCHHHHHHHHHHHh-----CCCCcEEEECCC----H
Confidence            44445555554 6799999999988877653   345431111111 23444444431     346999986654    2


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++.+.+.|+++|.++.-
T Consensus       236 ~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          236 KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             HHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHhcCCEEEEE
Confidence            4678889999999999874

>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}

Probab=94.53  E-value=0.51  Score=29.95  Aligned_cols=77  Identities=13%  Similarity=0.101  Sum_probs=52.3

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccHHHHHHH
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERL   86 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~~~~~~~   86 (157)
                      ..+|..+|-++......++.++..|.  .+. ...+..+.+..+.     ...+|+|++|...+       ...++++.+
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l   74 (140)
T 2qr3_A            3 LGTIIIVDDNKGVLTAVQLLLKNHFS--KVI-TLSSPVSLSTVLR-----EENPEVVLLDMNFTSGINNGNEGLFWLHEI   74 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTTSS--EEE-EECCHHHHHHHHH-----HSCEEEEEEETTTTC-----CCHHHHHHHH
T ss_pred             CceEEEEeCCHHHHHHHHHHHHhCCc--EEE-EeCCHHHHHHHHH-----cCCCCEEEEeCCcCCCCCCCccHHHHHHHH
Confidence            46899999999999999999987765  344 5567777766554     35699999997543       234555655


Q ss_pred             HhcccCCeEEEE
Q 031568           87 MKLLKVGGIAVY   98 (157)
Q Consensus        87 ~~~L~~gG~iv~   98 (157)
                      .+....--++++
T Consensus        75 ~~~~~~~~ii~l   86 (140)
T 2qr3_A           75 KRQYRDLPVVLF   86 (140)
T ss_dssp             HHHCTTCCEEEE
T ss_pred             HhhCcCCCEEEE
Confidence            554333344444

>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}

Probab=94.52  E-value=0.57  Score=30.48  Aligned_cols=70  Identities=19%  Similarity=0.162  Sum_probs=50.8

Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568           12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL   89 (157)
Q Consensus        12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~   89 (157)
                      ....+|..+|-++......+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+  ...++++.+.+.
T Consensus         5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~   76 (154)
T 2rjn_A            5 YKNYTVMLVDDEQPILNSLKRLIKRLGC--NII-TFTSPLDALEALK-----GTSVQLVISDMRMPEMGGEVFLEQVAKS   76 (154)
T ss_dssp             CSCCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESCHHHHHHHHT-----TSCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHHh
Confidence            3567899999999999999999988765  354 5677777776663     45799999997543  234455555443

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=94.52  E-value=0.087  Score=40.25  Aligned_cols=85  Identities=18%  Similarity=0.142  Sum_probs=52.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +.+|++++.+++..+.+++    .|...-+.....+..+.+.+..    ....+|+||-...    ..
T Consensus       184 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~----~~~~~D~vi~~~G----~~  250 (351)
T 1yb5_A          184 GLAACQIARAY-GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV----GEKGIDIIIEMLA----NV  250 (351)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH----CTTCEEEEEESCH----HH
T ss_pred             HHHHHHHHHHC-CCEEEEEeCChhHHHHHHH----cCCCEEEeCCCchHHHHHHHHc----CCCCcEEEEECCC----hH
Confidence            44455555553 6799999999988876643    4543112211223333333332    1347999986543    23


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       251 ~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          251 NLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             HHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHhccCCCEEEEE
Confidence            567788999999999874

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=94.50  E-value=0.5  Score=30.70  Aligned_cols=78  Identities=9%  Similarity=-0.010  Sum_probs=53.2

Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568           12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL   89 (157)
Q Consensus        12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~   89 (157)
                      .+..+|..+|-++...+..++.++..|.. .+-....+..+.+..+.     ...+|+|++|...+  ...++++.+.+.
T Consensus        13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~   86 (152)
T 3eul_A           13 PEKVRVVVGDDHPLFREGVVRALSLSGSV-NVVGEADDGAAALELIK-----AHLPDVALLDYRMPGMDGAQVAAAVRSY   86 (152)
T ss_dssp             -CCEEEEEECSSHHHHHHHHHHHHHHSSE-EEEEEESSHHHHHHHHH-----HHCCSEEEEETTCSSSCHHHHHHHHHHT
T ss_pred             CceEEEEEEcCCHHHHHHHHHHHhhCCCe-EEEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence            35789999999999999999999887642 23335677777776654     35799999997533  234556665544


Q ss_pred             ccCCeEE
Q 031568           90 LKVGGIA   96 (157)
Q Consensus        90 L~~gG~i   96 (157)
                       .+...+
T Consensus        87 -~~~~~i   92 (152)
T 3eul_A           87 -ELPTRV   92 (152)
T ss_dssp             -TCSCEE
T ss_pred             -CCCCeE
Confidence             344333

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.44  E-value=0.16  Score=39.12  Aligned_cols=81  Identities=15%  Similarity=0.139  Sum_probs=52.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+|+.. +++|++++.+++..+.+++    .|.+ .  ++...-.+.+..+      .+.+|+||-.....   .
T Consensus       207 G~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~----lGa~-~--vi~~~~~~~~~~~------~~g~Dvvid~~g~~---~  269 (369)
T 1uuf_A          207 GHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGAD-E--VVNSRNADEMAAH------LKSFDFILNTVAAP---H  269 (369)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCS-E--EEETTCHHHHHTT------TTCEEEEEECCSSC---C
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCc-E--EeccccHHHHHHh------hcCCCEEEECCCCH---H
Confidence            44555566654 6789999999999888765    4543 2  2322222333333      25799998554432   2


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       270 ~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          270 NLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             CHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHhccCCEEEEe
Confidence            356778999999999864

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.30  E-value=0.069  Score=40.83  Aligned_cols=83  Identities=10%  Similarity=0.130  Sum_probs=52.4

Q ss_pred             cccH-HHHH-hhCCCcE-EEEEeCChh---HHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPT-KLFM-TGNKILQ-ITAIDVNRE---TYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st-~~l~-~~~~~~~-v~~ve~~~~---~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |+.+ ..+| +.. +++ |++++.+++   ..+.+++    .|.+ .+.....|..+ +.++ .    . .+|+||-...
T Consensus       185 G~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~~-i~~~-~----g-g~Dvvid~~g  251 (357)
T 2b5w_A          185 GLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEE----LDAT-YVDSRQTPVED-VPDV-Y----E-QMDFIYEATG  251 (357)
T ss_dssp             HHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHH----TTCE-EEETTTSCGGG-HHHH-S----C-CEEEEEECSC
T ss_pred             HHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHH----cCCc-ccCCCccCHHH-HHHh-C----C-CCCEEEECCC
Confidence            4555 5566 544 555 999999988   8777654    4542 23111224444 4433 1    3 7999984433


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEec
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                         ....++.+.+.|+++|.++.-.
T Consensus       252 ---~~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          252 ---FPKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             ---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             ---ChHHHHHHHHHHhcCCEEEEEe
Confidence               2446788899999999998743

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=94.25  E-value=0.68  Score=30.36  Aligned_cols=77  Identities=10%  Similarity=0.066  Sum_probs=52.5

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCC--ceeEEEEcCCCc--ccHHHHHHHHhcc
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVDADKD--NYCNYHERLMKLL   90 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~--~fD~I~iD~~~~--~~~~~~~~~~~~L   90 (157)
                      .+|..+|-++...+..++.++..|.  .+.....+..+.+..+.     ..  .+|+|++|...+  .-.++++.+.+.-
T Consensus        37 ~~Ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~l~-----~~~~~~dliilD~~l~~~~g~~~~~~lr~~~  109 (157)
T 3hzh_A           37 FNVLIVDDSVFTVKQLTQIFTSEGF--NIIDTAADGEEAVIKYK-----NHYPNIDIVTLXITMPKMDGITCLSNIMEFD  109 (157)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HHGGGCCEEEECSSCSSSCHHHHHHHHHHHC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHH-----hcCCCCCEEEEeccCCCccHHHHHHHHHhhC
Confidence            4899999999999999999988875  34336778877776654     23  799999997543  2345555555433


Q ss_pred             cCCeEEEE
Q 031568           91 KVGGIAVY   98 (157)
Q Consensus        91 ~~gG~iv~   98 (157)
                      ..--+|++
T Consensus       110 ~~~~ii~l  117 (157)
T 3hzh_A          110 KNARVIMI  117 (157)
T ss_dssp             TTCCEEEE
T ss_pred             CCCcEEEE
Confidence            22234444

>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}

Probab=94.19  E-value=0.64  Score=29.66  Aligned_cols=77  Identities=8%  Similarity=-0.082  Sum_probs=53.5

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHhhcCCCC-CceeEEEEcCCCc-c--cHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENE-GSFDYAFVDADKD-N--YCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~l~~~~~~~~~~-~~fD~I~iD~~~~-~--~~~~~~~~~~   88 (157)
                      ..+|..+|-++......+..++. .|.  .+. ...+..+.+..+.     . ..+|+|++|...+ .  ..++++.+.+
T Consensus         4 ~~~ilivdd~~~~~~~l~~~L~~~~~~--~v~-~~~~~~~a~~~l~-----~~~~~dlvi~D~~l~~~~~g~~~~~~l~~   75 (140)
T 3lua_A            4 DGTVLLIDYFEYEREKTKIIFDNIGEY--DFI-EVENLKKFYSIFK-----DLDSITLIIMDIAFPVEKEGLEVLSAIRN   75 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHHCCC--EEE-EECSHHHHHTTTT-----TCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhccCc--cEE-EECCHHHHHHHHh-----cCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence            56899999999999999999998 765  454 6677777776553     4 6899999998655 2  2344555544


Q ss_pred             --cccCCeEEEE
Q 031568           89 --LLKVGGIAVY   98 (157)
Q Consensus        89 --~L~~gG~iv~   98 (157)
                        ....--+|++
T Consensus        76 ~~~~~~~~ii~l   87 (140)
T 3lua_A           76 NSRTANTPVIIA   87 (140)
T ss_dssp             SGGGTTCCEEEE
T ss_pred             CcccCCCCEEEE
Confidence              3333344444

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=94.16  E-value=0.19  Score=33.09  Aligned_cols=68  Identities=18%  Similarity=0.263  Sum_probs=50.6

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM   87 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~   87 (157)
                      .+-+|..||=++......++.++..|+. .+ ....|..+.+..+.     ...||+|++|-..+.  -.+..+.+.
T Consensus        11 k~~rILiVDD~~~~r~~l~~~L~~~G~~-~v-~~a~~g~~al~~~~-----~~~~DlillD~~MP~mdG~el~~~ir   80 (134)
T 3to5_A           11 KNMKILIVDDFSTMRRIVKNLLRDLGFN-NT-QEADDGLTALPMLK-----KGDFDFVVTDWNMPGMQGIDLLKNIR   80 (134)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHHHHTTCC-CE-EEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCc-EE-EEECCHHHHHHHHH-----hCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence            5678999999999999999999999874 23 34567877776654     457999999975443  244555554

>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A

Probab=94.10  E-value=0.59  Score=28.94  Aligned_cols=76  Identities=14%  Similarity=0.131  Sum_probs=52.5

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---ccHHHHHHHHhc--
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---NYCNYHERLMKL--   89 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~~~~~~~~~~~~--   89 (157)
                      .+|..+|-++...+..++.++..|.  ++. ...+..+.+..+.     ...+|+|++|...+   ...++++.+.+.  
T Consensus         6 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~   77 (127)
T 2gkg_A            6 KKILIVESDTALSATLRSALEGRGF--TVD-ETTDGKGSVEQIR-----RDRPDLVVLAVDLSAGQNGYLICGKLKKDDD   77 (127)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHHTC--EEE-EECCHHHHHHHHH-----HHCCSEEEEESBCGGGCBHHHHHHHHHHSTT
T ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCc--eEE-EecCHHHHHHHHH-----hcCCCEEEEeCCCCCCCCHHHHHHHHhcCcc
Confidence            4899999999999999999998776  453 5567777766553     34699999997543   234556666554  


Q ss_pred             ccCCeEEEE
Q 031568           90 LKVGGIAVY   98 (157)
Q Consensus        90 L~~gG~iv~   98 (157)
                      ...--++++
T Consensus        78 ~~~~~ii~~   86 (127)
T 2gkg_A           78 LKNVPIVII   86 (127)
T ss_dssp             TTTSCEEEE
T ss_pred             ccCCCEEEE
Confidence            233345555

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=94.09  E-value=0.097  Score=39.63  Aligned_cols=68  Identities=13%  Similarity=0.114  Sum_probs=47.0

Q ss_pred             hCCC-cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--------c---
Q 031568           11 GNKI-LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------N---   78 (157)
Q Consensus        11 ~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--------~---   78 (157)
                      ..|. +.|+++|+.|-..           .. . .+++||..+..        ..++||+|+.|..+.        .   
T Consensus       134 ~~p~g~~VVavDL~~~~s-----------da-~-~~IqGD~~~~~--------~~~k~DLVISDMAPNtTG~~D~d~~Rs  192 (344)
T 3r24_A          134 WLPTGTLLVDSDLNDFVS-----------DA-D-STLIGDCATVH--------TANKWDLIISDMYDPRTKHVTKENDSK  192 (344)
T ss_dssp             HSCTTCEEEEEESSCCBC-----------SS-S-EEEESCGGGEE--------ESSCEEEEEECCCCTTSCSSCSCCCCC
T ss_pred             hCCCCcEEEEeeCccccc-----------CC-C-eEEEccccccc--------cCCCCCEEEecCCCCcCCccccchhHH
Confidence            4565 6999999987542           11 2 45999976521        147899999996321        1   


Q ss_pred             ---cHHHHHHHHhcccCCeEEEEe
Q 031568           79 ---YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ---~~~~~~~~~~~L~~gG~iv~~   99 (157)
                         .+..++.+.+.|+|||-+++.
T Consensus       193 ~~L~ElALdfA~~~LkpGGsFvVK  216 (344)
T 3r24_A          193 EGFFTYLCGFIKQKLALGGSIAVK  216 (344)
T ss_dssp             CTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCcCCCEEEEE
Confidence               234466677899999999997

>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}

Probab=94.01  E-value=0.75  Score=29.89  Aligned_cols=78  Identities=10%  Similarity=0.065  Sum_probs=53.2

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLL   90 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L   90 (157)
                      ...+|..+|-++......++.++..|.  .+. ...+..+.+..+.     ...+|+|++|...+  ...++++.+.+.-
T Consensus        13 ~~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~~~   84 (153)
T 3hv2_A           13 RRPEILLVDSQEVILQRLQQLLSPLPY--TLH-FARDATQALQLLA-----SREVDLVISAAHLPQMDGPTLLARIHQQY   84 (153)
T ss_dssp             SCCEEEEECSCHHHHHHHHHHHTTSSC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred             CCceEEEECCCHHHHHHHHHHhcccCc--EEE-EECCHHHHHHHHH-----cCCCCEEEEeCCCCcCcHHHHHHHHHhHC
Confidence            356899999999999999999988764  343 5567777776664     45799999997543  2345566655532


Q ss_pred             cCCeEEEE
Q 031568           91 KVGGIAVY   98 (157)
Q Consensus        91 ~~gG~iv~   98 (157)
                      ..--+|++
T Consensus        85 ~~~~ii~~   92 (153)
T 3hv2_A           85 PSTTRILL   92 (153)
T ss_dssp             TTSEEEEE
T ss_pred             CCCeEEEE
Confidence            22334443

>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1

Probab=93.94  E-value=0.71  Score=29.33  Aligned_cols=69  Identities=6%  Similarity=0.117  Sum_probs=50.0

Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCC-CceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE-GSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~-~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      .+..+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     . ..+|+|++|...+.  ..++++.+.+
T Consensus        13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~~~~dlvilD~~l~~~~g~~~~~~l~~   84 (138)
T 2b4a_A           13 MQPFRVTLVEDEPSHATLIQYHLNQLGA--EVT-VHPSGSAFFQHRS-----QLSTCDLLIVSDQLVDLSIFSLLDIVKE   84 (138)
T ss_dssp             -CCCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHTGG-----GGGSCSEEEEETTCTTSCHHHHHHHHTT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHHcCC--EEE-EeCCHHHHHHHHH-----hCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            3688999999999999999999988775  343 5567777776553     4 57999999975432  3445555554

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=93.88  E-value=0.24  Score=38.09  Aligned_cols=85  Identities=11%  Similarity=0.107  Sum_probs=52.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+|+.. +++|+++- +++..+.++    ++|.+.-+.....|..+.+.++.     .+.+|+||-...   ...
T Consensus       178 G~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~----~lGa~~vi~~~~~~~~~~v~~~t-----~g~~d~v~d~~g---~~~  243 (371)
T 3gqv_A          178 ATVTMQMLRLS-GYIPIATC-SPHNFDLAK----SRGAEEVFDYRAPNLAQTIRTYT-----KNNLRYALDCIT---NVE  243 (371)
T ss_dssp             HHHHHHHHHHT-TCEEEEEE-CGGGHHHHH----HTTCSEEEETTSTTHHHHHHHHT-----TTCCCEEEESSC---SHH
T ss_pred             HHHHHHHHHHC-CCEEEEEe-CHHHHHHHH----HcCCcEEEECCCchHHHHHHHHc-----cCCccEEEECCC---chH
Confidence            44455566554 67888884 888877665    45654223333345555555542     345999985433   345


Q ss_pred             HHHHHHhcc-cCCeEEEEec
Q 031568           82 YHERLMKLL-KVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L-~~gG~iv~~~  100 (157)
                      .++.+.+.| +++|.++.-.
T Consensus       244 ~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          244 STTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             HHHHHHHHSCTTCEEEEESS
T ss_pred             HHHHHHHHhhcCCCEEEEEe
Confidence            677888888 6999998743

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=93.82  E-value=0.1  Score=42.42  Aligned_cols=80  Identities=14%  Similarity=0.122  Sum_probs=55.2

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH-HHHhhcCCCCCceeEEEEcCCCcc--------------
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENEGSFDYAFVDADKDN--------------   78 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l-~~~~~~~~~~~~fD~I~iD~~~~~--------------   78 (157)
                      ...++++|+++.++.+|+-|+-..|.. ...+..+|....- ...    ....+||+|+.+++...              
T Consensus       254 ~~~i~G~E~~~~~~~la~mNl~lhg~~-~~~I~~~dtL~~~~~~~----~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~  328 (530)
T 3ufb_A          254 ESSIFGGEAKSLPYLLVQMNLLLHGLE-YPRIDPENSLRFPLREM----GDKDRVDVILTNPPFGGEEEKGILGNFPEDM  328 (530)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHHHTCS-CCEEECSCTTCSCGGGC----CGGGCBSEEEECCCSSCBCCHHHHTTSCGGG
T ss_pred             hhhhhhhhccHHHHHHHHHHHHhcCCc-cccccccccccCchhhh----cccccceEEEecCCCCccccccccccCchhc
Confidence            357999999999999999999888875 4567888876431 110    01347999999985310              


Q ss_pred             -----cHHHHHHHHhccc-------CCeEEEE
Q 031568           79 -----YCNYHERLMKLLK-------VGGIAVY   98 (157)
Q Consensus        79 -----~~~~~~~~~~~L~-------~gG~iv~   98 (157)
                           ...+++.+...|+       +||.+.+
T Consensus       329 ~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~av  360 (530)
T 3ufb_A          329 QTAETAMLFLQLIMRKLKRPGHGSDNGGRAAV  360 (530)
T ss_dssp             CCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEE
T ss_pred             ccchhHHHHHHHHHHHhhhhhhccCCCceEEE
Confidence                 1235666666665       6887654

>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}

Probab=93.79  E-value=0.57  Score=29.54  Aligned_cols=74  Identities=22%  Similarity=0.130  Sum_probs=49.4

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~   92 (157)
                      -+|..+|-++...+..++.++..|.  .+.....+..+.+..+.     ...+|+|++|...+  ...++++.+.+. .|
T Consensus         2 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~-~~   73 (134)
T 3f6c_A            2 LNAIIIDDHPLAIAAIRNLLIKNDI--EILAELTEGGSAVQRVE-----TLKPDIVIIDVDIPGVNGIQVLETLRKR-QY   73 (134)
T ss_dssp             EEEEEECCCHHHHHHHHHHHHHTTE--EEEEEESSSTTHHHHHH-----HHCCSEEEEETTCSSSCHHHHHHHHHHT-TC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhhCCc--EEEEEcCCHHHHHHHHH-----hcCCCEEEEecCCCCCChHHHHHHHHhc-CC
Confidence            3789999999999999999998763  34334556666655543     35799999997543  234556665543 34


Q ss_pred             CeEE
Q 031568           93 GGIA   96 (157)
Q Consensus        93 gG~i   96 (157)
                      +..+
T Consensus        74 ~~~i   77 (134)
T 3f6c_A           74 SGII   77 (134)
T ss_dssp             CSEE
T ss_pred             CCeE
Confidence            4333

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=93.74  E-value=0.14  Score=40.13  Aligned_cols=47  Identities=6%  Similarity=0.041  Sum_probs=34.8

Q ss_pred             CcccHHHHH-hhCC-CcEEEEEeCChhHHHHHHHHHHH--cCCC-CcEEEEE
Q 031568            1 MHLPTKLFM-TGNK-ILQITAIDVNRETYEIGLPIIKK--AGVD-HKINFIE   47 (157)
Q Consensus         1 ~g~st~~l~-~~~~-~~~v~~ve~~~~~~~~a~~~~~~--~~~~-~~i~~~~   47 (157)
                      .|..|..++ +..+ .++|+++|++|..++..++|++.  ++.. ++++++.
T Consensus       237 ~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~  288 (409)
T 2py6_A          237 IGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG  288 (409)
T ss_dssp             TSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred             cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEE
Confidence            376777777 4444 48999999999999999999998  3222 4666553

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=93.62  E-value=0.082  Score=39.81  Aligned_cols=84  Identities=7%  Similarity=0.017  Sum_probs=49.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+++.. +++|++++.+++..+.+++    .|.+.-+.....+ .+.+..+     ..+.+|+||-....    .
T Consensus       163 G~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~-~~~~~~~-----~~~~~d~vid~~g~----~  227 (328)
T 1xa0_A          163 GSLAVSMLAKR-GYTVEASTGKAAEHDYLRV----LGAKEVLAREDVM-AERIRPL-----DKQRWAAAVDPVGG----R  227 (328)
T ss_dssp             HHHHHHHHHHT-TCCEEEEESCTTCHHHHHH----TTCSEEEECC----------C-----CSCCEEEEEECSTT----T
T ss_pred             HHHHHHHHHHC-CCEEEEEECCHHHHHHHHH----cCCcEEEecCCcH-HHHHHHh-----cCCcccEEEECCcH----H
Confidence            44455566554 6789999999988887754    4543212111111 1222222     13469998754432    2


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.++++|.++.-.
T Consensus       228 ~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          228 TLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             THHHHHHTEEEEEEEEECS
T ss_pred             HHHHHHHhhccCCEEEEEe
Confidence            4677889999999998743

>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}

Probab=93.43  E-value=0.9  Score=28.86  Aligned_cols=68  Identities=13%  Similarity=0.111  Sum_probs=50.1

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~   88 (157)
                      +..+|..+|-++......++.++..|.  .+ ....+..+.+..+.     ...+|+|++|...+  .-.++++.+.+
T Consensus         5 ~~~~iLivdd~~~~~~~l~~~l~~~g~--~v-~~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~   74 (140)
T 3grc_A            5 PRPRILICEDDPDIARLLNLMLEKGGF--DS-DMVHSAAQALEQVA-----RRPYAAMTVDLNLPDQDGVSLIRALRR   74 (140)
T ss_dssp             CCSEEEEECSCHHHHHHHHHHHHHTTC--EE-EEECSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHT
T ss_pred             CCCCEEEEcCCHHHHHHHHHHHHHCCC--eE-EEECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            457899999999999999999998776  34 45567777776664     45799999997543  23455666554

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.43  E-value=0.056  Score=41.07  Aligned_cols=83  Identities=16%  Similarity=0.111  Sum_probs=53.2

Q ss_pred             cccHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcE-EEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKI-NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+++.. +. +|++++.+++..+.+++. .     +.+ .....+..+.+.++.     ...+|+||-...   .
T Consensus       177 G~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a-----~~v~~~~~~~~~~~~~~~~-----~~g~D~vid~~g---~  241 (343)
T 2dq4_A          177 GLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-A-----DRLVNPLEEDLLEVVRRVT-----GSGVEVLLEFSG---N  241 (343)
T ss_dssp             HHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-C-----SEEECTTTSCHHHHHHHHH-----SSCEEEEEECSC---C
T ss_pred             HHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-H-----HhccCcCccCHHHHHHHhc-----CCCCCEEEECCC---C
Confidence            55555666665 55 899999999888877653 1     111 111234444444432     346999985543   3


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ...++.+.+.|+++|.++.-
T Consensus       242 ~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          242 EAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             HHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCEEEEE
Confidence            45678889999999999864

>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0

Probab=93.42  E-value=0.55  Score=29.92  Aligned_cols=68  Identities=16%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc----cHHHHHHHHhc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----YCNYHERLMKL   89 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~----~~~~~~~~~~~   89 (157)
                      ..+|..+|-++......++.++..|.  .+. ...+..+.+..+.     ..++|+|++|...+.    ..++++.+.+.
T Consensus         6 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~   77 (136)
T 3kto_A            6 HPIIYLVDHQKDARAALSKLLSPLDV--TIQ-CFASAESFMRQQI-----SDDAIGMIIEAHLEDKKDSGIELLETLVKR   77 (136)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHTTSSS--EEE-EESSHHHHTTSCC-----CTTEEEEEEETTGGGBTTHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHh-----ccCCCEEEEeCcCCCCCccHHHHHHHHHhC
Confidence            56899999999999999999987765  344 5567777765442     467999999976443    23445555443

>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}

Probab=93.41  E-value=1.2  Score=30.15  Aligned_cols=69  Identities=13%  Similarity=0.013  Sum_probs=50.7

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL   89 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~   89 (157)
                      ...+|..||-++......+..++..|.  .+ ....+..+.+..+.     ...+|+|++|...+  .-.++++.+.+.
T Consensus         6 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~~~-----~~~~dlvl~D~~lp~~~g~~~~~~l~~~   76 (184)
T 3rqi_A            6 SDKNFLVIDDNEVFAGTLARGLERRGY--AV-RQAHNKDEALKLAG-----AEKFEFITVXLHLGNDSGLSLIAPLCDL   76 (184)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHHTTC--EE-EEECSHHHHHHHHT-----TSCCSEEEECSEETTEESHHHHHHHHHH
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHCCC--EE-EEeCCHHHHHHHHh-----hCCCCEEEEeccCCCccHHHHHHHHHhc
Confidence            356899999999999999999998775  35 56678888877663     56799999996432  234556665543

>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}

Probab=93.39  E-value=0.7  Score=29.67  Aligned_cols=68  Identities=13%  Similarity=0.170  Sum_probs=48.9

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~   88 (157)
                      ...+|..+|-++......++.++..|.  .+. ...+..+.+..+.     ...+|+|++|...+  ...++++.+.+
T Consensus         7 ~~~~iLivd~~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~   76 (147)
T 2zay_A            7 KWWRIMLVDTQLPALAASISALSQEGF--DII-QCGNAIEAVPVAV-----KTHPHLIITEANMPKISGMDLFNSLKK   76 (147)
T ss_dssp             -CEEEEEECTTGGGGHHHHHHHHHHTE--EEE-EESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHH-----cCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence            467899999999999999999988775  354 5667777766554     34699999997543  23455565554

>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}

Probab=93.36  E-value=0.88  Score=28.52  Aligned_cols=69  Identities=10%  Similarity=0.006  Sum_probs=49.1

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL   89 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~   89 (157)
                      ...+|..+|-++......++.++..|.  .+. ...+..+.+..+.     ..++|+|++|...+.  ..++++.+.+.
T Consensus         5 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~   75 (132)
T 3lte_A            5 QSKRILVVDDDQAMAAAIERVLKRDHW--QVE-IAHNGFDAGIKLS-----TFEPAIMTLDLSMPKLDGLDVIRSLRQN   75 (132)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HTCCSEEEEESCBTTBCHHHHHHHHHTT
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHH-----hcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence            467899999999999999999988765  343 5667777776654     457999999975432  34555555543

>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C

Probab=93.33  E-value=0.68  Score=28.94  Aligned_cols=65  Identities=15%  Similarity=0.049  Sum_probs=48.1

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM   87 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~   87 (157)
                      .+|..+|-++......+..++..|.  .+. ...+..+.+..+.     ..++|+|++|...+.  -.++++.+.
T Consensus         3 ~~ILivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~al~~l~-----~~~~dlvllD~~~p~~~g~~~~~~l~   69 (122)
T 3gl9_A            3 KKVLLVDDSAVLRKIVSFNLKKEGY--EVI-EAENGQIALEKLS-----EFTPDLIVLXIMMPVMDGFTVLKKLQ   69 (122)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHT-----TBCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHH-----hcCCCEEEEeccCCCCcHHHHHHHHH
Confidence            4799999999999999999988875  343 5678888777663     567999999975433  244555554

>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A

Probab=93.23  E-value=0.89  Score=28.22  Aligned_cols=66  Identities=15%  Similarity=0.140  Sum_probs=48.3

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc--HHHHHHHHh
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMK   88 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~--~~~~~~~~~   88 (157)
                      .+|..+|-++......+..++..|.  .+. ...+..+.+..+.     ..++|+|++|...+..  .++++.+.+
T Consensus         3 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlii~D~~~p~~~g~~~~~~lr~   70 (120)
T 3f6p_A            3 KKILVVDDEKPIADILEFNLRKEGY--EVH-CAHDGNEAVEMVE-----ELQPDLILLDIMLPNKDGVEVCREVRK   70 (120)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----TTCCSEEEEETTSTTTHHHHHHHHHHT
T ss_pred             CeEEEEECCHHHHHHHHHHHHhCCE--EEE-EeCCHHHHHHHHh-----hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            5799999999999999999988875  343 4677877776664     4679999999765432  344555443

>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0

Probab=93.18  E-value=1  Score=28.79  Aligned_cols=70  Identities=9%  Similarity=0.100  Sum_probs=50.4

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      ...+|..+|-++......++.++..|... .-....+..+.+..+.     ...+|+|++|...+.  ..++++.+.+
T Consensus         4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~-----~~~~dlii~D~~l~~~~g~~~~~~lr~   75 (144)
T 3kht_A            4 RSKRVLVVEDNPDDIALIRRVLDRKDIHC-QLEFVDNGAKALYQVQ-----QAKYDLIILDIGLPIANGFEVMSAVRK   75 (144)
T ss_dssp             -CEEEEEECCCHHHHHHHHHHHHHTTCCE-EEEEESSHHHHHHHHT-----TCCCSEEEECTTCGGGCHHHHHHHHHS
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHhcCCCe-eEEEECCHHHHHHHhh-----cCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            35689999999999999999999987642 2345567777776663     567999999975432  3445555554

>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A

Probab=93.11  E-value=1.1  Score=29.04  Aligned_cols=77  Identities=13%  Similarity=0.062  Sum_probs=51.9

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~   91 (157)
                      ..+|..+|-++......+..+...|.  .+. ...+..+.+..+.     ...+|+|++|...+  ...++++.+.+...
T Consensus         3 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dliild~~l~~~~g~~~~~~l~~~~~   74 (155)
T 1qkk_A            3 APSVFLIDDDRDLRKAMQQTLELAGF--TVS-SFASATEALAGLS-----ADFAGIVISDIRMPGMDGLALFRKILALDP   74 (155)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHTCC-----TTCCSEEEEESCCSSSCHHHHHHHHHHHCT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCc--EEE-EECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence            56899999999999999999998776  354 5667777776542     45799999997543  23445555554433


Q ss_pred             CCeEEEE
Q 031568           92 VGGIAVY   98 (157)
Q Consensus        92 ~gG~iv~   98 (157)
                      .--++++
T Consensus        75 ~~pii~l   81 (155)
T 1qkk_A           75 DLPMILV   81 (155)
T ss_dssp             TSCEEEE
T ss_pred             CCCEEEE
Confidence            3334444

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=93.11  E-value=0.18  Score=39.89  Aligned_cols=85  Identities=12%  Similarity=0.030  Sum_probs=52.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH-----------------HHHHHHHhhcCCCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-----------------LSVLDQLLKYSENE   64 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-----------------~~~l~~~~~~~~~~   64 (157)
                      |+.++.+++.. ++++++++.+++..+.+++    .|.+.-+.....|.                 .+.+.++.    ..
T Consensus       242 G~~avqlak~~-Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t----~g  312 (456)
T 3krt_A          242 GSYATQFALAG-GANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELT----GG  312 (456)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHH----TS
T ss_pred             HHHHHHHHHHc-CCeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHh----CC
Confidence            44555566554 7899999999998887755    45432121111111                 13333332    13


Q ss_pred             CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 031568           65 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        65 ~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..+|+||-...    ...++.+.+.|+++|.++.-
T Consensus       313 ~g~Dvvid~~G----~~~~~~~~~~l~~~G~iv~~  343 (456)
T 3krt_A          313 EDIDIVFEHPG----RETFGASVFVTRKGGTITTC  343 (456)
T ss_dssp             CCEEEEEECSC----HHHHHHHHHHEEEEEEEEES
T ss_pred             CCCcEEEEcCC----chhHHHHHHHhhCCcEEEEE
Confidence            57998875433    25688889999999999874

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=93.10  E-value=0.22  Score=39.15  Aligned_cols=85  Identities=14%  Similarity=-0.003  Sum_probs=52.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH------------------HHHHHHHhhcCCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA------------------LSVLDQLLKYSEN   63 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~------------------~~~l~~~~~~~~~   63 (157)
                      |+.++.+++. -++++++++.+++..+.+++    .|...-+.....+.                  .+.+....     
T Consensus       234 G~~a~qla~~-~Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----  303 (447)
T 4a0s_A          234 GSYAIQFVKN-GGGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKA-----  303 (447)
T ss_dssp             HHHHHHHHHH-TTCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHH-cCCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccchhhhHHHHHHHHHh-----
Confidence            4455556655 47899999999998887753    56542222111110                  12222221     


Q ss_pred             CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEec
Q 031568           64 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        64 ~~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ...+|+||-....    ..++.+.+.|+++|.++.-.
T Consensus       304 g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          304 GREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             SSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred             CCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence            3469999865442    46788889999999998743

>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}

Probab=93.09  E-value=1.1  Score=28.98  Aligned_cols=78  Identities=13%  Similarity=0.060  Sum_probs=51.9

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLL   90 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L   90 (157)
                      ..+|..+|-++...+..+..++. .|.  .+.....+..+.+..+.     ...+|+|++|...+  ...++++.+.+.-
T Consensus         5 ~~~ILivdd~~~~~~~l~~~L~~~~~~--~v~~~~~~~~~a~~~l~-----~~~~dlii~D~~l~~~~g~~~~~~l~~~~   77 (153)
T 3cz5_A            5 TARIMLVDDHPIVREGYRRLIERRPGY--AVVAEAADAGEAYRLYR-----ETTPDIVVMDLTLPGPGGIEATRHIRQWD   77 (153)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHTTSTTE--EEEEEESSHHHHHHHHH-----TTCCSEEEECSCCSSSCHHHHHHHHHHHC
T ss_pred             ccEEEEECCcHHHHHHHHHHHhhCCCc--EEEEEeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence            56899999999999999998876 443  23335677777776664     45799999997543  2345566655443


Q ss_pred             cCCeEEEE
Q 031568           91 KVGGIAVY   98 (157)
Q Consensus        91 ~~gG~iv~   98 (157)
                      ..--++++
T Consensus        78 ~~~~ii~l   85 (153)
T 3cz5_A           78 GAARILIF   85 (153)
T ss_dssp             TTCCEEEE
T ss_pred             CCCeEEEE
Confidence            22334444

>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}

Probab=92.82  E-value=1.3  Score=28.88  Aligned_cols=68  Identities=12%  Similarity=-0.022  Sum_probs=49.8

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~   88 (157)
                      ...+|..+|-++......++.++..|.  .+ ....+..+.+..+.     ..++|+|++|...+  ...++++.+.+
T Consensus         6 ~~~~ILivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~l~-----~~~~dlii~D~~l~~~~g~~~~~~lr~   75 (154)
T 3gt7_A            6 RAGEILIVEDSPTQAEHLKHILEETGY--QT-EHVRNGREAVRFLS-----LTRPDLIISDVLMPEMDGYALCRWLKG   75 (154)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHTTTC--EE-EEESSHHHHHHHHT-----TCCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred             CCCcEEEEeCCHHHHHHHHHHHHHCCC--EE-EEeCCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            467999999999999999999998775  34 34567777777663     56799999997543  23445555544

>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}

Probab=92.80  E-value=1.2  Score=28.39  Aligned_cols=76  Identities=18%  Similarity=0.208  Sum_probs=51.8

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc--HHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~--~~~~~~~~~~L~   91 (157)
                      ..+|..+|-++......++.++..|.  .+. ...+..+.+..+.     ...+|+|++|. .+..  .++++.+.+...
T Consensus         4 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~   74 (142)
T 2qxy_A            4 TPTVMVVDESRITFLAVKNALEKDGF--NVI-WAKNEQEAFTFLR-----REKIDLVFVDV-FEGEESLNLIRRIREEFP   74 (142)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHGGGTC--EEE-EESSHHHHHHHHT-----TSCCSEEEEEC-TTTHHHHHHHHHHHHHCT
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHh-----ccCCCEEEEeC-CCCCcHHHHHHHHHHHCC
Confidence            46899999999999999999988776  454 5677777776663     46799999997 5432  234444444322


Q ss_pred             CCeEEEE
Q 031568           92 VGGIAVY   98 (157)
Q Consensus        92 ~gG~iv~   98 (157)
                      .--+|++
T Consensus        75 ~~pii~l   81 (142)
T 2qxy_A           75 DTKVAVL   81 (142)
T ss_dssp             TCEEEEE
T ss_pred             CCCEEEE
Confidence            2334444

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.80  E-value=0.52  Score=30.81  Aligned_cols=73  Identities=4%  Similarity=-0.049  Sum_probs=46.9

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL   90 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L   90 (157)
                      .+.+|+.+|.+++.++.+++    .    .+.++.||+.+  .+....     -...|.|++-.+....-...-...+.+
T Consensus        29 ~g~~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~~l~~a~-----i~~ad~vi~~~~~~~~n~~~~~~a~~~   95 (140)
T 3fwz_A           29 SDIPLVVIETSRTRVDELRE----R----GVRAVLGNAANEEIMQLAH-----LECAKWLILTIPNGYEAGEIVASARAK   95 (140)
T ss_dssp             TTCCEEEEESCHHHHHHHHH----T----TCEEEESCTTSHHHHHHTT-----GGGCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCHHHHHHHHH----c----CCCEEECCCCCHHHHHhcC-----cccCCEEEEECCChHHHHHHHHHHHHH
Confidence            47799999999998877654    2    35678898754  343321     257999998654332222223344667


Q ss_pred             cCCeEEEE
Q 031568           91 KVGGIAVY   98 (157)
Q Consensus        91 ~~gG~iv~   98 (157)
                      .|+..+++
T Consensus        96 ~~~~~iia  103 (140)
T 3fwz_A           96 NPDIEIIA  103 (140)
T ss_dssp             CSSSEEEE
T ss_pred             CCCCeEEE
Confidence            78877776

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.78  E-value=0.86  Score=36.47  Aligned_cols=87  Identities=11%  Similarity=0.096  Sum_probs=51.9

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH---cCC---------CCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK---AGV---------DHKINFIESEALSVLDQLLKYSENEGSFD   68 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~---~~~---------~~~i~~~~~d~~~~l~~~~~~~~~~~~fD   68 (157)
                      ||++++..++. .+-+|+++|++++.++..++....   .|+         ..++++ ..|..+.+.          ..|
T Consensus        19 vG~~lA~~la~-~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~~----------~aD   86 (478)
T 2y0c_A           19 VGLVTGACLAD-IGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAVA----------HGD   86 (478)
T ss_dssp             HHHHHHHHHHH-TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHHH----------HCS
T ss_pred             HHHHHHHHHHh-CCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHhh----------cCC
Confidence            46666665554 366899999999988877653100   010         113433 334433332          479


Q ss_pred             EEEEcCCC----------cccHHHHHHHHhcccCCeEEEEe
Q 031568           69 YAFVDADK----------DNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        69 ~I~iD~~~----------~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      +||+--+.          ......++.+.+.+++|.+++..
T Consensus        87 vviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~  127 (478)
T 2y0c_A           87 VQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDK  127 (478)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             EEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            99986433          23455666777889988877653

>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0

Probab=92.73  E-value=1.1  Score=27.91  Aligned_cols=68  Identities=13%  Similarity=0.169  Sum_probs=49.4

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL   89 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~   89 (157)
                      ..+|..+|-++...+..++.++..|.  .+. ...+..+.+..+.     ...+|+|++|...+  .-.++++.+.+.
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlii~D~~l~~~~g~~~~~~l~~~   72 (127)
T 3i42_A            3 LQQALIVEDYQAAAETFKELLEMLGF--QAD-YVMSGTDALHAMS-----TRGYDAVFIDLNLPDTSGLALVKQLRAL   72 (127)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHHTTE--EEE-EESSHHHHHHHHH-----HSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred             cceEEEEcCCHHHHHHHHHHHHHcCC--CEE-EECCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence            45899999999999999999998875  343 4567777776654     35799999997533  234556666554

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=92.70  E-value=0.049  Score=40.94  Aligned_cols=81  Identities=11%  Similarity=0.100  Sum_probs=51.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+|+.. +++|++++.+++..+.+++    .|.+ .+  +..+-.+.+..+     ..+.+|+||-...    .+
T Consensus       160 G~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~-~v--i~~~~~~~~~~~-----~~~~~d~v~d~~g----~~  222 (324)
T 3nx4_A          160 GSTAVALLHKL-GYQVAAVSGRESTHGYLKS----LGAN-RI--LSRDEFAESRPL-----EKQLWAGAIDTVG----DK  222 (324)
T ss_dssp             HHHHHHHHHHT-TCCEEEEESCGGGHHHHHH----HTCS-EE--EEGGGSSCCCSS-----CCCCEEEEEESSC----HH
T ss_pred             HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCC-EE--EecCCHHHHHhh-----cCCCccEEEECCC----cH
Confidence            44555566654 6699999999999888865    4543 22  211111111111     1357998764332    23


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       223 ~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          223 VLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             HHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHHhcCCEEEEE
Confidence            788899999999999874

>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*

Probab=92.65  E-value=1.1  Score=27.97  Aligned_cols=73  Identities=16%  Similarity=0.065  Sum_probs=48.0

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhccc
Q 031568           15 LQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLK   91 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~   91 (157)
                      .+|..+|-++...+..++.+... |.  .+.....+..+.+..+.     ..++|+|++|...+.  -.+.++.+.+...
T Consensus         3 ~~ilivdd~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~a~~~~~-----~~~~dlvllD~~l~~~~g~~~~~~l~~~~~   75 (130)
T 1dz3_A            3 IKVCIADDNRELVSLLDEYISSQPDM--EVIGTAYNGQDCLQMLE-----EKRPDILLLDIIMPHLDGLAVLERIRAGFE   75 (130)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTSTTE--EEEEEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHHHCS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHhcCC
Confidence            47899999999999999988765 32  22224567777776553     346999999975432  3445565554323


Q ss_pred             CCe
Q 031568           92 VGG   94 (157)
Q Consensus        92 ~gG   94 (157)
                      +..
T Consensus        76 ~~~   78 (130)
T 1dz3_A           76 HQP   78 (130)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            443

>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}

Probab=92.63  E-value=1.2  Score=28.22  Aligned_cols=68  Identities=13%  Similarity=0.097  Sum_probs=50.0

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~   88 (157)
                      ...+|..+|-++...+..++.++..|+  ++. ...+..+.+..+.     ...+|+|++|...+  ...++++.+.+
T Consensus         6 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~   75 (142)
T 3cg4_A            6 HKGDVMIVDDDAHVRIAVKTILSDAGF--HII-SADSGGQCIDLLK-----KGFSGVVLLDIMMPGMDGWDTIRAILD   75 (142)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----TCCCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHCCe--EEE-EeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            467899999999999999999998875  343 5567777776654     45799999997543  23455665554

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=92.57  E-value=0.23  Score=37.68  Aligned_cols=77  Identities=13%  Similarity=0.135  Sum_probs=51.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+|+.. +++|++++.+++..+.+++    .|.+ .+  + .+..    .+      ...+|+||-.....   .
T Consensus       189 G~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~-~v--~-~~~~----~~------~~~~D~vid~~g~~---~  246 (348)
T 3two_A          189 GSMAVKYAVAM-GAEVSVFARNEHKKQDALS----MGVK-HF--Y-TDPK----QC------KEELDFIISTIPTH---Y  246 (348)
T ss_dssp             HHHHHHHHHHT-TCEEEEECSSSTTHHHHHH----TTCS-EE--E-SSGG----GC------CSCEEEEEECCCSC---C
T ss_pred             HHHHHHHHHHC-CCeEEEEeCCHHHHHHHHh----cCCC-ee--c-CCHH----HH------hcCCCEEEECCCcH---H
Confidence            55555666654 6799999999999887754    5653 22  2 3332    11      23799998544432   2


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.|+++|.++.-.
T Consensus       247 ~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          247 DLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             CHHHHHTTEEEEEEEEECC
T ss_pred             HHHHHHHHHhcCCEEEEEC
Confidence            4677889999999999743

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=92.42  E-value=0.46  Score=36.15  Aligned_cols=90  Identities=10%  Similarity=0.016  Sum_probs=48.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE---ccHHHHHHHHh--hcCCCCCceeEEEEcCCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLL--KYSENEGSFDYAFVDADK   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~---~d~~~~l~~~~--~~~~~~~~fD~I~iD~~~   76 (157)
                      |+.++.+|+.. +++++++..+++..+..++.+++.|.+.-+....   .+..+.+.++.  .    ...+|+||-... 
T Consensus       181 G~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~----~~g~Dvvid~~G-  254 (364)
T 1gu7_A          181 GKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQS----GGEAKLALNCVG-  254 (364)
T ss_dssp             HHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHH----TCCEEEEEESSC-
T ss_pred             HHHHHHHHHHC-CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhcc----CCCceEEEECCC-
Confidence            44455566553 6788888766554222233344567542121111   23333443331  1    346999985433 


Q ss_pred             cccHHHHHHHHhcccCCeEEEEec
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                        ..... .+.+.|+++|.++.-.
T Consensus       255 --~~~~~-~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          255 --GKSST-GIARKLNNNGLMLTYG  275 (364)
T ss_dssp             --HHHHH-HHHHTSCTTCEEEECC
T ss_pred             --chhHH-HHHHHhccCCEEEEec
Confidence              22333 6779999999998743

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=92.26  E-value=1.5  Score=28.31  Aligned_cols=76  Identities=9%  Similarity=0.018  Sum_probs=51.2

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~   91 (157)
                      -.+|..+|-++...+..++.++..+.. ..-....+..+.+..+.     ...+|+|++|...+  ...++++.+.+. .
T Consensus        20 m~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~-----~~~~dlii~D~~l~~~~g~~~~~~l~~~-~   92 (150)
T 4e7p_A           20 HMKVLVAEDQSMLRDAMCQLLTLQPDV-ESVLQAKNGQEAIQLLE-----KESVDIAILDVEMPVKTGLEVLEWIRSE-K   92 (150)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHT-----TSCCSEEEECSSCSSSCHHHHHHHHHHT-T
T ss_pred             ccEEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHhh-----ccCCCEEEEeCCCCCCcHHHHHHHHHHh-C
Confidence            458999999999999999999876521 22334567777776663     56799999997533  234556665544 3


Q ss_pred             CCeEE
Q 031568           92 VGGIA   96 (157)
Q Consensus        92 ~gG~i   96 (157)
                      ++..+
T Consensus        93 ~~~~i   97 (150)
T 4e7p_A           93 LETKV   97 (150)
T ss_dssp             CSCEE
T ss_pred             CCCeE
Confidence            44333

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=92.26  E-value=0.21  Score=37.97  Aligned_cols=82  Identities=11%  Similarity=0.028  Sum_probs=46.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+++...+.+|++++ +++..+.++     .|.+.-+. ...|..+.+.++.     .+.+|+||-.....    
T Consensus       156 G~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~~~~~~~-----~~g~Dvv~d~~g~~----  219 (349)
T 4a27_A          156 GQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQEVKRIS-----AEGVDIVLDCLCGD----  219 (349)
T ss_dssp             HHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHHHHHHHC-----TTCEEEEEEECC------
T ss_pred             HHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHHHHHHhc-----CCCceEEEECCCch----
Confidence            44444555555578999988 555544443     45432233 3344555555442     45799998544322    


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       220 ~~~~~~~~l~~~G~~v~~  237 (349)
T 4a27_A          220 NTGKGLSLLKPLGTYILY  237 (349)
T ss_dssp             -----CTTEEEEEEEEEE
T ss_pred             hHHHHHHHhhcCCEEEEE
Confidence            246788999999999863

>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}

Probab=92.16  E-value=1.4  Score=27.93  Aligned_cols=75  Identities=13%  Similarity=0.056  Sum_probs=49.2

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~   88 (157)
                      +..+|..+|-++......+..++..|....+ ....+..+.+..+.........+|+|++|...+  .-.++++.+.+
T Consensus         8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~   84 (146)
T 3ilh_A            8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEI-QSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQ   84 (146)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHHTTCCEEEE-EEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCHHHHHHHHHHHHhcCCCeee-eecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence            4568999999999999999999887753123 345677776665531000016799999997543  23455666555

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=92.06  E-value=0.26  Score=37.72  Aligned_cols=50  Identities=18%  Similarity=0.159  Sum_probs=37.4

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH-HhhcCCCCCceeEEEEcCC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~-~~~~~~~~~~fD~I~iD~~   75 (157)
                      ..|.++|+++.+++..+.|+..      ..++.+|+.++... +.     ...+|+|+.+++
T Consensus        27 ~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~-----~~~~D~l~~gpP   77 (343)
T 1g55_A           27 QVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFD-----RLSFDMILMSPP   77 (343)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHH-----HHCCSEEEECCC
T ss_pred             eEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcC-----cCCcCEEEEcCC
Confidence            4699999999999999998742      34678888876432 21     126999999876

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=91.99  E-value=0.65  Score=34.37  Aligned_cols=78  Identities=18%  Similarity=0.163  Sum_probs=50.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..++.+++.. +.+|++++.+++..+.+++    .|.+ .  ++..+- .+....+       +.+|+||- ...    
T Consensus       139 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~-~--~~~~~~~~~~~~~~-------~~~d~vid-~g~----  198 (302)
T 1iz0_A          139 GTAAVQVARAM-GLRVLAAASRPEKLALPLA----LGAE-E--AATYAEVPERAKAW-------GGLDLVLE-VRG----  198 (302)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSGGGSHHHHH----TTCS-E--EEEGGGHHHHHHHT-------TSEEEEEE-CSC----
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCC-E--EEECCcchhHHHHh-------cCceEEEE-CCH----
Confidence            44455566554 6799999999998887754    4543 2  222221 2332221       46999987 643    


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++.+.+.|+++|.++.-
T Consensus       199 ~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          199 KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             TTHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHhhccCCEEEEE
Confidence            3567888999999999863

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=91.97  E-value=0.15  Score=39.33  Aligned_cols=48  Identities=6%  Similarity=0.133  Sum_probs=37.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   53 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   53 (157)
                      |.=|..|+......+|++||+|+..+...++.+ .   .++++++++|+.++
T Consensus        70 G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           70 GIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDW  117 (353)
T ss_dssp             CHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCH
T ss_pred             CHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccch
Confidence            455666665444678999999999999998876 2   35899999999876

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=91.93  E-value=0.17  Score=38.70  Aligned_cols=83  Identities=19%  Similarity=0.091  Sum_probs=51.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHH-HHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL-SVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |+.++.+++.. +.+|++++.+++..+.+++    .|.+ .  ++..+-. ++...+      .+.+|+||-..... ..
T Consensus       192 G~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~----lGa~-~--v~~~~~~~~~~~~~------~~~~D~vid~~g~~-~~  256 (360)
T 1piw_A          192 GSMGTLISKAM-GAETYVISRSSRKREDAMK----MGAD-H--YIATLEEGDWGEKY------FDTFDLIVVCASSL-TD  256 (360)
T ss_dssp             HHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCS-E--EEEGGGTSCHHHHS------CSCEEEEEECCSCS-TT
T ss_pred             HHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH----cCCC-E--EEcCcCchHHHHHh------hcCCCEEEECCCCC-cH
Confidence            45555566654 6689999999999888765    4543 2  2322111 233333      24799998554320 01


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++.+.+.|+++|.++.-
T Consensus       257 ~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          257 IDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             CCTTTGGGGEEEEEEEEEC
T ss_pred             HHHHHHHHHhcCCCEEEEe
Confidence            2356678899999999864

>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A

Probab=91.89  E-value=1.8  Score=29.96  Aligned_cols=74  Identities=19%  Similarity=0.211  Sum_probs=49.0

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc--------CCCCCceeEEEEcCCCcc--cHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY--------SENEGSFDYAFVDADKDN--YCNY   82 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~--------~~~~~~fD~I~iD~~~~~--~~~~   82 (157)
                      .+.+|..||-++......++.++..|.. .+ ....+..+.+..+...        ......||+|++|...+.  -.++
T Consensus        60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~-~v-~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el  137 (206)
T 3mm4_A           60 RGKRVLVVDDNFISRKVATGKLKKMGVS-EV-EQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEA  137 (206)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHHTTCS-EE-EEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCC-ee-eeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHH
Confidence            3569999999999999999999998763 23 3456776666554310        000137999999975432  3445


Q ss_pred             HHHHHh
Q 031568           83 HERLMK   88 (157)
Q Consensus        83 ~~~~~~   88 (157)
                      ++.+.+
T Consensus       138 ~~~lr~  143 (206)
T 3mm4_A          138 TREIRK  143 (206)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=91.89  E-value=1.4  Score=34.87  Aligned_cols=87  Identities=11%  Similarity=0.067  Sum_probs=52.0

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHH------------HHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPII------------KKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   68 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~------------~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD   68 (157)
                      ||.+++..++. .+-+|+++|++++.++..++..            ++.-...++++ ..|..+.+          ...|
T Consensus        13 vG~~lA~~La~-~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~----------~~aD   80 (450)
T 3gg2_A           13 VGLVSATCFAE-LGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAV----------PEAD   80 (450)
T ss_dssp             HHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHG----------GGCS
T ss_pred             HHHHHHHHHHh-cCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHH----------hcCC
Confidence            45555554444 3679999999999888766521            00000123443 24444432          2579


Q ss_pred             EEEEcCCCc----------ccHHHHHHHHhcccCCeEEEEe
Q 031568           69 YAFVDADKD----------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        69 ~I~iD~~~~----------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      +||+-.+.+          .....++.+.+.+++|.+++..
T Consensus        81 vViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~  121 (450)
T 3gg2_A           81 IIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTK  121 (450)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             EEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEe
Confidence            999865433          3456677777888888777664

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}

Probab=91.82  E-value=1.6  Score=27.63  Aligned_cols=69  Identities=13%  Similarity=0.033  Sum_probs=48.5

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~   88 (157)
                      ...+|..+|-++......++.++. .|.  .+-....+..+.+..+.     ...+|+|++|...+  ...++++.+.+
T Consensus         7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~--~~v~~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~   78 (143)
T 3cnb_A            7 NDFSILIIEDDKEFADMLTQFLENLFPY--AKIKIAYNPFDAGDLLH-----TVKPDVVMLDLMMVGMDGFSICHRIKS   78 (143)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHHHHCTT--CEEEEECSHHHHHHHHH-----HTCCSEEEEETTCTTSCHHHHHHHHHT
T ss_pred             CCceEEEEECCHHHHHHHHHHHHhccCc--cEEEEECCHHHHHHHHH-----hcCCCEEEEecccCCCcHHHHHHHHHh
Confidence            467899999999999999999988 776  32345567777766554     35699999997543  23455666554

>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y

Probab=91.75  E-value=1.4  Score=26.99  Aligned_cols=67  Identities=16%  Similarity=0.091  Sum_probs=47.0

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      .+|..+|-++......++.++..|.  .+.....+..+.+..+.     ..++|+|++|...+.  -.++++.+.+
T Consensus         3 ~~ilivdd~~~~~~~l~~~l~~~g~--~vv~~~~~~~~a~~~~~-----~~~~dlil~D~~l~~~~g~~~~~~l~~   71 (120)
T 1tmy_A            3 KRVLIVDDAAFMRMMLKDIITKAGY--EVAGEATNGREAVEKYK-----ELKPDIVTMDITMPEMNGIDAIKEIMK   71 (120)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEECSCGGGCHHHHHHHHHH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhhcCc--EEEEEECCHHHHHHHHH-----hcCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence            4789999999999999999987765  33335677777766553     346999999975432  2344555543

>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*

Probab=91.71  E-value=1.4  Score=26.84  Aligned_cols=65  Identities=15%  Similarity=0.279  Sum_probs=46.3

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      +|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ..++|+|++|...+.  -.+.++.+.+
T Consensus         3 ~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~g~~~~~~l~~   69 (116)
T 3a10_A            3 RILVVDDEPNIRELLKEELQEEGY--EID-TAENGEEALKKFF-----SGNYDLVILDIEMPGISGLEVAGEIRK   69 (116)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHh-----cCCCCEEEEECCCCCCCHHHHHHHHHc
Confidence            688999999999999999988765  344 5567777766553     357999999975432  2344555544

>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A

Probab=91.59  E-value=1.7  Score=27.48  Aligned_cols=67  Identities=12%  Similarity=0.043  Sum_probs=48.4

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL   89 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~   89 (157)
                      +..+|..+|-++...+..++.++..|.  .+. ...+..+.+..+.     ...+|+|+ .+.. ...++++.+.+.
T Consensus        17 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~~~dlvi-~~~~-~g~~~~~~l~~~   83 (137)
T 2pln_A           17 GSMRVLLIEKNSVLGGEIEKGLNVKGF--MAD-VTESLEDGEYLMD-----IRNYDLVM-VSDK-NALSFVSRIKEK   83 (137)
T ss_dssp             TCSEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHH-----HSCCSEEE-ECST-THHHHHHHHHHH
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHHcCc--EEE-EeCCHHHHHHHHH-----cCCCCEEE-EcCc-cHHHHHHHHHhc
Confidence            577999999999999999999998775  454 5677777776554     35799999 3322 334566666555

>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B

Probab=91.49  E-value=1.7  Score=27.45  Aligned_cols=72  Identities=11%  Similarity=0.254  Sum_probs=45.6

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      .+|..+|-++......+..++..|.. .+ ....+..+.+..+.........||+|++|...+.  -.+.++.+.+
T Consensus         3 ~~ILivdD~~~~~~~l~~~L~~~g~~-~v-~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~   76 (133)
T 2r25_B            3 VKILVVEDNHVNQEVIKRMLNLEGIE-NI-ELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRR   76 (133)
T ss_dssp             SCEEEECSCHHHHHHHHHHHHHTTCC-CE-EEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred             ceEEEEcCCHHHHHHHHHHHHHcCCc-eE-EEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHh
Confidence            46899999999999999999887653 23 3456666655443210000157999999975432  2345555544

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=91.48  E-value=3.1  Score=31.26  Aligned_cols=100  Identities=9%  Similarity=0.001  Sum_probs=64.7

Q ss_pred             cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCC--CCcEEEEEccHHH-HHHHHhhcCCCCCceeEEEEcCC--
Q 031568            2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALS-VLDQLLKYSENEGSFDYAFVDAD--   75 (157)
Q Consensus         2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~-~l~~~~~~~~~~~~fD~I~iD~~--   75 (157)
                      |+-|...-..+| +.+++=|| .|+.++..++.+...+.  .++..++.+|+.+ ++..+....-.....=++++.+-  
T Consensus       112 GlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~~i~Egvl~  190 (310)
T 2uyo_A          112 GLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTAWLAEGLLM  190 (310)
T ss_dssp             TTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEEEEECSCGG
T ss_pred             CCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCEEEEEechHh
Confidence            777776555545 57899999 69999999999987553  4678899999874 33333211000122334444432  


Q ss_pred             ---CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           76 ---KDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        76 ---~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                         ......+++.+...+.||+.++++.+.
T Consensus       191 Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          191 YLPATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             GSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             hCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence               122345677777888899999998754

>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}

Probab=91.44  E-value=2.3  Score=30.20  Aligned_cols=68  Identities=16%  Similarity=0.134  Sum_probs=49.6

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      +..+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  -.++++.+.+
T Consensus        22 ~~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvllD~~lp~~~g~~~~~~lr~   91 (250)
T 3r0j_A           22 PEARVLVVDDEANIVELLSVSLKFQGF--EVY-TATNGAQALDRAR-----ETRPDAVILDVXMPGMDGFGVLRRLRA   91 (250)
T ss_dssp             SSCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred             CCceEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            357999999999999999999988775  354 5677877776654     357999999975432  3445555544

>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}

Probab=91.38  E-value=0.13  Score=33.55  Aligned_cols=67  Identities=18%  Similarity=0.206  Sum_probs=48.0

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM   87 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~   87 (157)
                      ..+|..||=++......++.++..|..  +.....+..+.+..+.     ..+||+|++|-..+.  -.+..+.+.
T Consensus         8 ~~rILiVdD~~~~~~~l~~~L~~~G~~--v~~~a~~g~eAl~~~~-----~~~~DlvllDi~mP~~~G~el~~~lr   76 (123)
T 2lpm_A            8 RLRVLVVEDESMIAMLIEDTLCELGHE--VAATASRMQEALDIAR-----KGQFDIAIIDVNLDGEPSYPVADILA   76 (123)
T ss_dssp             CCCEEEESSSTTTSHHHHHHHHHHCCC--CCBCSCCHHHHHHHHH-----HCCSSEEEECSSSSSCCSHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHH-----hCCCCEEEEecCCCCCCHHHHHHHHH
Confidence            468999999999999999999999874  3223467777776554     467999999975432  234444444

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=91.31  E-value=0.75  Score=35.17  Aligned_cols=82  Identities=17%  Similarity=0.150  Sum_probs=50.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +.+|++++.+++..+.+++   +.|.+ .+ +-..+ .+.+.++      .+.+|+||-......   
T Consensus       200 G~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~---~lGa~-~v-~~~~~-~~~~~~~------~~~~D~vid~~g~~~---  263 (366)
T 1yqd_A          200 GHVAVKFAKAF-GSKVTVISTSPSKKEEALK---NFGAD-SF-LVSRD-QEQMQAA------AGTLDGIIDTVSAVH---  263 (366)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESCGGGHHHHHH---TSCCS-EE-EETTC-HHHHHHT------TTCEEEEEECCSSCC---
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---hcCCc-eE-EeccC-HHHHHHh------hCCCCEEEECCCcHH---
Confidence            45555666654 6799999999988776653   44543 22 21222 2334433      347999986544321   


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       264 ~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          264 PLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             CSHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHHHhcCCEEEEE
Confidence            235667889999998864

>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0

Probab=91.30  E-value=1.8  Score=27.25  Aligned_cols=70  Identities=11%  Similarity=-0.012  Sum_probs=49.0

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL   89 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~   89 (157)
                      +..+|..+|-++......++.++..|.  .+. ...+..+.+..+..    ...+|+|++|...+  ...++++.+.+.
T Consensus         6 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~~----~~~~dlvi~D~~l~~~~g~~~~~~l~~~   77 (136)
T 3hdv_A            6 ARPLVLVVDDNAVNREALILYLKSRGI--DAV-GADGAEEARLYLHY----QKRIGLMITDLRMQPESGLDLIRTIRAS   77 (136)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHHTTC--CEE-EESSHHHHHHHHHH----CTTEEEEEECSCCSSSCHHHHHHHHHTS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHHcCc--eEE-EeCCHHHHHHHHHh----CCCCcEEEEeccCCCCCHHHHHHHHHhc
Confidence            467899999999999999999998876  343 35667666665532    33499999997543  234556665543

>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}

Probab=91.28  E-value=1.7  Score=27.05  Aligned_cols=78  Identities=13%  Similarity=-0.003  Sum_probs=52.8

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCC-ceeEEEEcCCCc---ccHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFDYAFVDADKD---NYCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~-~fD~I~iD~~~~---~~~~~~~~~~~   88 (157)
                      ...+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     .. .+|+|++|...+   ...++++.+.+
T Consensus         4 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~~dlvi~d~~l~~~~~g~~~~~~l~~   75 (132)
T 2rdm_A            4 EAVTILLADDEAILLLDFESTLTDAGF--LVT-AVSSGAKAIEMLK-----SGAAIDGVVTDIRFCQPPDGWQVARVARE   75 (132)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----TTCCCCEEEEESCCSSSSCHHHHHHHHHH
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHH-----cCCCCCEEEEeeeCCCCCCHHHHHHHHHh
Confidence            356899999999999999999988776  344 4677777776654     34 799999997543   23455555554


Q ss_pred             cccCCeEEEE
Q 031568           89 LLKVGGIAVY   98 (157)
Q Consensus        89 ~L~~gG~iv~   98 (157)
                      .-..--++++
T Consensus        76 ~~~~~~ii~~   85 (132)
T 2rdm_A           76 IDPNMPIVYI   85 (132)
T ss_dssp             HCTTCCEEEE
T ss_pred             cCCCCCEEEE
Confidence            4322334444

>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}

Probab=91.28  E-value=1.8  Score=27.23  Aligned_cols=67  Identities=16%  Similarity=0.203  Sum_probs=47.9

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      ..+|..+|-++......+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  -.++++.+.+
T Consensus         3 ~~~Ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvl~D~~l~~~~g~~~~~~l~~   71 (132)
T 3crn_A            3 LKRILIVDDDTAILDSTKQILEFEGY--EVE-IAATAGEGLAKIE-----NEFFNLALFXIKLPDMEGTELLEKAHK   71 (132)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSBCSSSBHHHHHHHHHH
T ss_pred             ccEEEEEeCCHHHHHHHHHHHHHCCc--eEE-EeCCHHHHHHHHh-----cCCCCEEEEecCCCCCchHHHHHHHHh
Confidence            35799999999999999999988765  454 5677777776554     357999999975432  2445555543

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=91.26  E-value=0.35  Score=36.90  Aligned_cols=85  Identities=12%  Similarity=0.042  Sum_probs=50.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+|+..++++|++++.+++..+.+++    .|.+.-+... .+..+.+.++.    ....+|+||-...   ...
T Consensus       199 G~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~~~-~~~~~~v~~~~----~g~g~Dvvid~~G---~~~  266 (359)
T 1h2b_A          199 GHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGADHVVDAR-RDPVKQVMELT----RGRGVNVAMDFVG---SQA  266 (359)
T ss_dssp             HHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCSEEEETT-SCHHHHHHHHT----TTCCEEEEEESSC---CHH
T ss_pred             HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCEEEecc-chHHHHHHHHh----CCCCCcEEEECCC---Cch
Confidence            4455556665446799999999998887754    5643212111 11334444442    1236999985443   233


Q ss_pred             --HHHHHHhcccCCeEEEEec
Q 031568           82 --YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 --~~~~~~~~L~~gG~iv~~~  100 (157)
                        .++.+.+.  ++|.++.-.
T Consensus       267 ~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          267 TVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             HHHHGGGGEE--EEEEEEECC
T ss_pred             HHHHHHHhhc--CCCEEEEEe
Confidence              56677776  899988743

>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}

Probab=91.15  E-value=1.9  Score=27.38  Aligned_cols=70  Identities=11%  Similarity=0.093  Sum_probs=49.6

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---ccHHHHHHHHhc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---NYCNYHERLMKL   89 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~~~~~~~~~~~~   89 (157)
                      .+.+|..+|-++......++.++..|.  .+. ...+..+.+..+.+    ...+|+|++|...+   ...++++.+.+.
T Consensus         4 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~~----~~~~dlvi~D~~l~~~~~g~~~~~~l~~~   76 (140)
T 3h5i_A            4 KDKKILIVEDSKFQAKTIANILNKYGY--TVE-IALTGEAAVEKVSG----GWYPDLILMDIELGEGMDGVQTALAIQQI   76 (140)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHHT----TCCCSEEEEESSCSSSCCHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHHcCC--EEE-EecChHHHHHHHhc----CCCCCEEEEeccCCCCCCHHHHHHHHHhC
Confidence            356899999999999999999998875  344 56677777766641    25799999997542   334556665543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=91.14  E-value=0.39  Score=36.62  Aligned_cols=82  Identities=21%  Similarity=0.229  Sum_probs=50.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +++|++++.+++..+.+++   +.|.+ .+ +-..+ .+.+.++      .+.+|+||--.....   
T Consensus       193 G~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~---~lGa~-~v-i~~~~-~~~~~~~------~~g~D~vid~~g~~~---  256 (357)
T 2cf5_A          193 GHMGVKIAKAM-GHHVTVISSSNKKREEALQ---DLGAD-DY-VIGSD-QAKMSEL------ADSLDYVIDTVPVHH---  256 (357)
T ss_dssp             HHHHHHHHHHH-TCEEEEEESSTTHHHHHHT---TSCCS-CE-EETTC-HHHHHHS------TTTEEEEEECCCSCC---
T ss_pred             HHHHHHHHHHC-CCeEEEEeCChHHHHHHHH---HcCCc-ee-ecccc-HHHHHHh------cCCCCEEEECCCChH---
Confidence            45555566654 6799999999988776653   45653 22 11223 2333333      346999985443221   


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       257 ~~~~~~~~l~~~G~iv~~  274 (357)
T 2cf5_A          257 ALEPYLSLLKLDGKLILM  274 (357)
T ss_dssp             CSHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHhccCCEEEEe
Confidence            245677899999999874

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=90.96  E-value=2.7  Score=33.37  Aligned_cols=87  Identities=9%  Similarity=0.090  Sum_probs=51.9

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHH------------HHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPII------------KKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   68 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~------------~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD   68 (157)
                      ||+.++..++. .+-+|+++|++++.++..++..            ++.-...++++ ..|..+.+          ..-|
T Consensus        19 vG~~~A~~La~-~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~----------~~aD   86 (446)
T 4a7p_A           19 VGLVSGACFSD-FGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEGV----------KDAD   86 (446)
T ss_dssp             HHHHHHHHHHH-TTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH----------TTCS
T ss_pred             HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHHH----------hcCC
Confidence            46666665554 3779999999999988765420            00000123433 34554433          2478


Q ss_pred             EEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEEe
Q 031568           69 YAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        69 ~I~iD~~~~-----------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      +||+--+.+           ......+.+.+.|++|.++|..
T Consensus        87 vvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~  128 (446)
T 4a7p_A           87 AVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTK  128 (446)
T ss_dssp             EEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEEC
T ss_pred             EEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            998863221           2455666777889988887764

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=90.92  E-value=0.31  Score=37.24  Aligned_cols=81  Identities=15%  Similarity=0.093  Sum_probs=50.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCCh---hHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNR---ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~---~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |+.++.+++.. +++|++++.++   +..+.+++    .|.+ .+.  ..+..+.+.+.      .+.+|+||-..... 
T Consensus       193 G~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~----~ga~-~v~--~~~~~~~~~~~------~~~~d~vid~~g~~-  257 (366)
T 2cdc_A          193 GVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEE----TKTN-YYN--SSNGYDKLKDS------VGKFDVIIDATGAD-  257 (366)
T ss_dssp             HHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHH----HTCE-EEE--CTTCSHHHHHH------HCCEEEEEECCCCC-
T ss_pred             HHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHH----hCCc-eec--hHHHHHHHHHh------CCCCCEEEECCCCh-
Confidence            44455566554 56999999998   77766654    3542 231  11222333321      24699998665432 


Q ss_pred             cHHHH-HHHHhcccCCeEEEEe
Q 031568           79 YCNYH-ERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ~~~~~-~~~~~~L~~gG~iv~~   99 (157)
                        ..+ +.+.+.|+++|.++.-
T Consensus       258 --~~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          258 --VNILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             --THHHHHHGGGEEEEEEEEEC
T ss_pred             --HHHHHHHHHHHhcCCEEEEE
Confidence              245 7888999999999864

>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0

Probab=90.76  E-value=2.1  Score=27.14  Aligned_cols=67  Identities=13%  Similarity=0.118  Sum_probs=49.0

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      ..+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  -.++++.+.+
T Consensus         4 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvl~D~~lp~~~g~~~~~~lr~   72 (136)
T 3t6k_A            4 PHTLLIVDDDDTVAEMLELVLRGAGY--EVR-RAASGEEALQQIY-----KNLPDALICDVLLPGIDGYTLCKRVRQ   72 (136)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence            56899999999999999999988775  343 5567777776654     457999999975432  3445555543

>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0

Probab=90.74  E-value=2  Score=26.98  Aligned_cols=77  Identities=10%  Similarity=-0.005  Sum_probs=51.5

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLL   90 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L   90 (157)
                      ...+|..+|-++...+..++.++..+.  .+ ....+..+.+..+.     ..++|+|++|...+  ...++++.+.+. 
T Consensus         6 ~~~~ilivdd~~~~~~~l~~~L~~~~~--~v-~~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~-   76 (137)
T 3hdg_A            6 VALKILIVEDDTDAREWLSTIISNHFP--EV-WSAGDGEEGERLFG-----LHAPDVIITDIRMPKLGGLEMLDRIKAG-   76 (137)
T ss_dssp             -CCCEEEECSCHHHHHHHHHHHHTTCS--CE-EEESSHHHHHHHHH-----HHCCSEEEECSSCSSSCHHHHHHHHHHT-
T ss_pred             cccEEEEEeCCHHHHHHHHHHHHhcCc--EE-EEECCHHHHHHHHh-----ccCCCEEEEeCCCCCCCHHHHHHHHHhc-
Confidence            356899999999999999999987543  23 35567777766654     35799999997533  234556555543 


Q ss_pred             cCCeEEEE
Q 031568           91 KVGGIAVY   98 (157)
Q Consensus        91 ~~gG~iv~   98 (157)
                      .+...+++
T Consensus        77 ~~~~~ii~   84 (137)
T 3hdg_A           77 GAKPYVIV   84 (137)
T ss_dssp             TCCCEEEE
T ss_pred             CCCCcEEE
Confidence            34444443

>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1

Probab=90.65  E-value=2  Score=26.83  Aligned_cols=75  Identities=9%  Similarity=0.092  Sum_probs=49.9

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc--CCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY--SENEGSFDYAFVDADKD--NYCNYHERLMKL   89 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~--~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~   89 (157)
                      +.+|..+|-++...+..++.++..|....+ ....+..+.+..+...  ......+|+|++|...+  ...++++.+.+.
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~   80 (140)
T 1k68_A            2 HKKIFLVEDNKADIRLIQEALANSTVPHEV-VTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSD   80 (140)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHTCSSCCEE-EEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHS
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCCceE-EEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcC
Confidence            568999999999999999999988764233 3456777777665310  00015799999997543  234556655543

>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A

Probab=90.56  E-value=1.5  Score=32.42  Aligned_cols=58  Identities=9%  Similarity=0.052  Sum_probs=47.1

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      ...+|..+|=++......+..++..|.  .+.....|..+.+..+.     ..+||+|++|-..+
T Consensus       159 l~~rILvVdD~~~~~~~l~~~L~~~g~--~v~~~a~~g~eAl~~~~-----~~~~dlvl~D~~MP  216 (286)
T 3n0r_A          159 LATEVLIIEDEPVIAADIEALVRELGH--DVTDIAATRGEALEAVT-----RRTPGLVLADIQLA  216 (286)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HCCCSEEEEESCCT
T ss_pred             CCCcEEEEcCCHHHHHHHHHHhhccCc--eEEEEeCCHHHHHHHHH-----hCCCCEEEEcCCCC
Confidence            467899999999999999999999886  35436788888887764     45799999997544

>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*

Probab=90.56  E-value=1.1  Score=28.75  Aligned_cols=69  Identities=13%  Similarity=0.087  Sum_probs=47.5

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcCCCCC-ceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENEG-SFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~~~~-~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      +.-+|..+|-++......++.++.. |.  .+-....+..+.+..+.     .. .+|+|++|...+.  -.++++.+..
T Consensus        12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~--~~v~~~~~~~~al~~l~-----~~~~~dlvilD~~l~~~~g~~~~~~lr~   84 (145)
T 3kyj_B           12 SPYNVMIVDDAAMMRLYIASFIKTLPDF--KVVAQAANGQEALDKLA-----AQPNVDLILLDIEMPVMDGMEFLRHAKL   84 (145)
T ss_dssp             CSEEEEEECSCHHHHHHHHHHHTTCTTE--EEEEEESSHHHHHHHHH-----HCTTCCEEEECTTSCCCTTCHHHHHHHH
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEECCHHHHHHHHh-----cCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            5678999999999999999988765 32  22235677777776654     34 7999999975332  2344555443

>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.53  E-value=2.2  Score=27.06  Aligned_cols=67  Identities=4%  Similarity=-0.051  Sum_probs=46.2

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL   89 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~   89 (157)
                      .+|..+|-++......+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+  .-.++++.+.+.
T Consensus         5 ~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvllD~~l~~~~g~~l~~~l~~~   73 (137)
T 3cfy_A            5 PRVLLVEDSTSLAILYKQYVKDEPY--DIF-HVETGRDAIQFIE-----RSKPQLIILDLKLPDMSGEDVLDWINQN   73 (137)
T ss_dssp             CEEEEECSCTTHHHHHHHHTTTSSS--EEE-EESSHHHHHHHHH-----HHCCSEEEECSBCSSSBHHHHHHHHHHT
T ss_pred             ceEEEEeCCHHHHHHHHHHHHhcCc--eEE-EeCCHHHHHHHHH-----hcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence            4799999999999999888876654  343 5567777766553     34699999997533  234455555443

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=90.51  E-value=0.75  Score=35.22  Aligned_cols=83  Identities=16%  Similarity=0.091  Sum_probs=48.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+++.. +++|++++ +++..+.++    +.|.+.-+.....+..+.+..       ...+|+||-.....  ..
T Consensus       197 G~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~----~lGa~~v~~~~~~~~~~~~~~-------~~g~D~vid~~g~~--~~  261 (375)
T 2vn8_A          197 GTFAIQVMKAW-DAHVTAVC-SQDASELVR----KLGADDVIDYKSGSVEEQLKS-------LKPFDFILDNVGGS--TE  261 (375)
T ss_dssp             HHHHHHHHHHT-TCEEEEEE-CGGGHHHHH----HTTCSEEEETTSSCHHHHHHT-------SCCBSEEEESSCTT--HH
T ss_pred             HHHHHHHHHhC-CCEEEEEe-ChHHHHHHH----HcCCCEEEECCchHHHHHHhh-------cCCCCEEEECCCCh--hh
Confidence            44555566654 67999998 667666553    456531121112233333321       24699998554321  23


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+++|.++.-
T Consensus       262 ~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          262 TWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             HHGGGGBCSSSCCEEEES
T ss_pred             hhHHHHHhhcCCcEEEEe
Confidence            457778899999999863

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=90.50  E-value=0.22  Score=38.79  Aligned_cols=72  Identities=7%  Similarity=0.134  Sum_probs=44.5

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH   83 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~   83 (157)
                      .|-.++..  +++|++||..+-. .    .+..   .++|+++.+|+.++.+       ..++||+|++|.... .....
T Consensus       225 WT~~l~~r--g~~V~aVD~~~l~-~----~l~~---~~~V~~~~~d~~~~~~-------~~~~~D~vvsDm~~~-p~~~~  286 (375)
T 4auk_A          225 WTYQLVKR--NMWVYSVDNGPMA-Q----SLMD---TGQVTWLREDGFKFRP-------TRSNISWMVCDMVEK-PAKVA  286 (375)
T ss_dssp             HHHHHHHT--TCEEEEECSSCCC-H----HHHT---TTCEEEECSCTTTCCC-------CSSCEEEEEECCSSC-HHHHH
T ss_pred             HHHHHHHC--CCEEEEEEhhhcC-h----hhcc---CCCeEEEeCccccccC-------CCCCcCEEEEcCCCC-hHHhH
Confidence            45555543  7899999976422 1    1111   2589999999987643       246799999998642 33444


Q ss_pred             HHHHhcccCC
Q 031568           84 ERLMKLLKVG   93 (157)
Q Consensus        84 ~~~~~~L~~g   93 (157)
                      +...++|..+
T Consensus       287 ~l~~~wl~~~  296 (375)
T 4auk_A          287 ALMAQWLVNG  296 (375)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhcc
Confidence            4444444443

>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}

Probab=90.31  E-value=1.6  Score=27.70  Aligned_cols=66  Identities=14%  Similarity=0.146  Sum_probs=47.2

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      .+|..+|-++......+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  -.++++.+.+
T Consensus         4 ~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~   71 (138)
T 3c3m_A            4 YTILVVDDSPMIVDVFVTMLERGGY--RPI-TAFSGEECLEALN-----ATPPDLVLLDIMMEPMDGWETLERIKT   71 (138)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHcCc--eEE-EeCCHHHHHHHHh-----ccCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence            5799999999999999999988765  343 4567777766553     356999999975432  2445555543

>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}

Probab=90.28  E-value=2.7  Score=27.65  Aligned_cols=79  Identities=14%  Similarity=0.104  Sum_probs=51.5

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLL   90 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L   90 (157)
                      ...+|..+|-++......++.++..+.. .+-....+..+.+..+.     ...+|+|++|...+.  -.++++.+.+. 
T Consensus        24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~-----~~~~dlvilD~~l~~~~g~~l~~~lr~~-   96 (164)
T 3t8y_A           24 RVIRVLVVDDSAFMRMVLKDIIDSQPDM-KVVGFAKDGLEAVEKAI-----ELKPDVITMDIEMPNLNGIEALKLIMKK-   96 (164)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHH-----HHCCSEEEECSSCSSSCHHHHHHHHHHH-
T ss_pred             CccEEEEEcCCHHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHhc-----cCCCCEEEEeCCCCCCCHHHHHHHHHhc-
Confidence            3568999999999999999999876421 22224677777776654     346999999975332  34455555432 


Q ss_pred             cCCeEEEE
Q 031568           91 KVGGIAVY   98 (157)
Q Consensus        91 ~~gG~iv~   98 (157)
                      .+--++++
T Consensus        97 ~~~~ii~~  104 (164)
T 3t8y_A           97 APTRVIMV  104 (164)
T ss_dssp             SCCEEEEE
T ss_pred             CCceEEEE
Confidence            23344444

>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}

Probab=90.11  E-value=2  Score=25.84  Aligned_cols=67  Identities=15%  Similarity=0.039  Sum_probs=47.3

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL   89 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~   89 (157)
                      .+|..+|-++...+..++.++..|.  ++. ...+..+.+..+.     ...+|+|++|...+  ...+.++.+.+.
T Consensus         2 ~~iliv~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~~~~l~-----~~~~dlii~d~~~~~~~~~~~~~~l~~~   70 (119)
T 2j48_A            2 GHILLLEEEDEAATVVCEMLTAAGF--KVI-WLVDGSTALDQLD-----LLQPIVILMAWPPPDQSCLLLLQHLREH   70 (119)
T ss_dssp             CEEEEECCCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHH-----HHCCSEEEEECSTTCCTHHHHHHHHHHT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHhCCc--EEE-EecCHHHHHHHHH-----hcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence            5789999999999999999998776  454 4566776666553     34699999997543  234455555543

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=90.10  E-value=0.56  Score=36.36  Aligned_cols=80  Identities=10%  Similarity=0.107  Sum_probs=49.3

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH-HhhcCCCCCceeEEEEcCCCcc---------------
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGSFDYAFVDADKDN---------------   78 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~-~~~~~~~~~~fD~I~iD~~~~~---------------   78 (157)
                      ..+.++|+++.+++..+.|+.      ...++.+|+.+.... +.........+|+|+.++++..               
T Consensus        25 ~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ~fS~ag~~~~~d~r~~   98 (376)
T 3g7u_A           25 DVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQGFSSIGKGNPDDSRNQ   98 (376)
T ss_dssp             EEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCCTTC-------CHHHHH
T ss_pred             cEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCCCcccccCCCCCCchHH
Confidence            346799999999999988863      456788888765321 1000001357999999876432               


Q ss_pred             -cHHHHHHHHhcccCCeEEEEeccc
Q 031568           79 -YCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        79 -~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                       +.+++ .+.+.++|. +++++|+-
T Consensus        99 L~~~~~-~~v~~~~P~-~~v~ENV~  121 (376)
T 3g7u_A           99 LYMHFY-RLVSELQPL-FFLAENVP  121 (376)
T ss_dssp             HHHHHH-HHHHHHCCS-EEEEEECT
T ss_pred             HHHHHH-HHHHHhCCC-EEEEecch
Confidence             11222 334567775 56677763

>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}

Probab=90.04  E-value=2.5  Score=26.93  Aligned_cols=77  Identities=12%  Similarity=0.085  Sum_probs=48.7

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~   92 (157)
                      .+|..+|-++...+..+..+...+..-.+.....+..+.+..+.     ...+|+|++|...+.  -.++++.+.+. .|
T Consensus         3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~-----~~~~dlvllD~~lp~~~g~~l~~~l~~~-~~   76 (141)
T 3cu5_A            3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL-----KHPPNVLLTDVRMPRMDGIELVDNILKL-YP   76 (141)
T ss_dssp             CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHT-----TSCCSEEEEESCCSSSCHHHHHHHHHHH-CT
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHHhh-CC
Confidence            47899999999988888777532222134436777777776653     457999999975432  34455555443 34


Q ss_pred             CeEEE
Q 031568           93 GGIAV   97 (157)
Q Consensus        93 gG~iv   97 (157)
                      +..++
T Consensus        77 ~~~ii   81 (141)
T 3cu5_A           77 DCSVI   81 (141)
T ss_dssp             TCEEE
T ss_pred             CCcEE
Confidence            44333

>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*

Probab=90.00  E-value=2.3  Score=26.36  Aligned_cols=76  Identities=12%  Similarity=0.044  Sum_probs=51.3

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~   91 (157)
                      +.+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+  .-.++++.+.+. .
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~~~~~~~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~~-~   73 (126)
T 1dbw_A            3 DYTVHIVDDEEPVRKSLAFMLTMNGF--AVK-MHQSAEAFLAFAP-----DVRNGVLVTDLRMPDMSGVELLRNLGDL-K   73 (126)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHGG-----GCCSEEEEEECCSTTSCHHHHHHHHHHT-T
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCc--EEE-EeCCHHHHHHHHh-----cCCCCEEEEECCCCCCCHHHHHHHHHhc-C
Confidence            56899999999999999999988765  343 4567777766553     45799999997543  234455555443 3


Q ss_pred             CC-eEEEE
Q 031568           92 VG-GIAVY   98 (157)
Q Consensus        92 ~g-G~iv~   98 (157)
                      ++ -++++
T Consensus        74 ~~~~ii~~   81 (126)
T 1dbw_A           74 INIPSIVI   81 (126)
T ss_dssp             CCCCEEEE
T ss_pred             CCCCEEEE
Confidence            44 34444

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=89.89  E-value=0.25  Score=33.44  Aligned_cols=62  Identities=5%  Similarity=0.068  Sum_probs=38.5

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEE-EcCCCcccHHHHHHHHhccc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF-VDADKDNYCNYHERLMKLLK   91 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~-iD~~~~~~~~~~~~~~~~L~   91 (157)
                      .+..|+++|++|.+++                ++++|+.+-...+      -+.||+|+ +.++.+-.+.+++.+ +.+ 
T Consensus        58 ~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~------Y~~~DLIYsirPP~El~~~i~~lA-~~v-  113 (153)
T 2k4m_A           58 SKVDLVLTDIKPSHGG----------------IVRDDITSPRMEI------YRGAALIYSIRPPAEIHSSLMRVA-DAV-  113 (153)
T ss_dssp             SCCEEEEECSSCSSTT----------------EECCCSSSCCHHH------HTTEEEEEEESCCTTTHHHHHHHH-HHH-
T ss_pred             CCCeEEEEECCccccc----------------eEEccCCCCcccc------cCCcCEEEEcCCCHHHHHHHHHHH-HHc-
Confidence            5788999999998876                7888887633222      24799995 555544333344433 332 


Q ss_pred             CCeEEEEe
Q 031568           92 VGGIAVYD   99 (157)
Q Consensus        92 ~gG~iv~~   99 (157)
                       |.-+++.
T Consensus       114 -~adliI~  120 (153)
T 2k4m_A          114 -GARLIIK  120 (153)
T ss_dssp             -TCEEEEE
T ss_pred             -CCCEEEE
Confidence             4444443

>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A

Probab=89.84  E-value=3.4  Score=28.16  Aligned_cols=77  Identities=8%  Similarity=0.006  Sum_probs=52.8

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~   91 (157)
                      ..+|..+|-++......+..+...|.  .+.....+..+.+..+.     ...+|+|++|...+.  ..++++.+... .
T Consensus        13 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~~~-----~~~~dlvi~D~~~p~~~g~~~~~~l~~~-~   84 (205)
T 1s8n_A           13 PRRVLIAEDEALIRMDLAEMLREEGY--EIVGEAGDGQEAVELAE-----LHKPDLVIMDVKMPRRDGIDAASEIASK-R   84 (205)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHHT-T
T ss_pred             CccEEEEECCHHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHh-----hcCCCEEEEeCCCCCCChHHHHHHHHhc-C
Confidence            46899999999999999999988765  34445677777776553     346999999975432  34455555443 3


Q ss_pred             CCeEEEE
Q 031568           92 VGGIAVY   98 (157)
Q Consensus        92 ~gG~iv~   98 (157)
                      +.-+|++
T Consensus        85 ~~pii~l   91 (205)
T 1s8n_A           85 IAPIVVL   91 (205)
T ss_dssp             CSCEEEE
T ss_pred             CCCEEEE
Confidence            3455554

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=89.81  E-value=6.5  Score=31.32  Aligned_cols=86  Identities=14%  Similarity=0.118  Sum_probs=50.3

Q ss_pred             CcccHHHHHh-hCCCcEEEEEeCChhHHHHHHHH------------HHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCce
Q 031568            1 MHLPTKLFMT-GNKILQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   67 (157)
Q Consensus         1 ~g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~------------~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~f   67 (157)
                      ||.+++..++ ..++.+|+++|++++.++..++.            +.+. ...++++ ..|..+.+.          ..
T Consensus        20 vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~-~~~~l~~-t~~~~~~~~----------~a   87 (481)
T 2o3j_A           20 VGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAA-RGRNLFF-SSDIPKAIA----------EA   87 (481)
T ss_dssp             THHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHH-BTTTEEE-ESCHHHHHH----------HC
T ss_pred             HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHh-hcCCEEE-ECCHHHHhh----------cC
Confidence            5666666444 43578999999999988776531            1110 0112332 334433332          47


Q ss_pred             eEEEEcCCCc---------------ccHHHHHHHHhcccCCeEEEE
Q 031568           68 DYAFVDADKD---------------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        68 D~I~iD~~~~---------------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      |+||+..+.+               ......+.+.+.+++|.+++.
T Consensus        88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~  133 (481)
T 2o3j_A           88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVE  133 (481)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             CEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEE
Confidence            9999864221               134556667788888877765

>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A

Probab=89.68  E-value=1.6  Score=27.95  Aligned_cols=69  Identities=13%  Similarity=0.149  Sum_probs=46.6

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHHhhcCCCC-CceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAG-VDHKINFIESEALSVLDQLLKYSENE-GSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~l~~~~~~~~~~-~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      +..+|..+|-++......++.++..| +  .+.. ..+..+.+..+.+    . ..+|+|++|...+.  ..++++.+.+
T Consensus        19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~--~v~~-~~~~~~~~~~~~~----~~~~~dlvi~D~~l~~~~g~~~~~~l~~   91 (146)
T 4dad_A           19 GMINILVASEDASRLAHLARLVGDAGRY--RVTR-TVGRAAQIVQRTD----GLDAFDILMIDGAALDTAELAAIEKLSR   91 (146)
T ss_dssp             GGCEEEEECSCHHHHHHHHHHHHHHCSC--EEEE-ECCCHHHHTTCHH----HHTTCSEEEEECTTCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHhhCCCe--EEEE-eCCHHHHHHHHHh----cCCCCCEEEEeCCCCCccHHHHHHHHHH
Confidence            46799999999999999999999887 4  3433 4455545443321    2 57999999986543  2344554444

>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0

Probab=89.64  E-value=2.8  Score=26.93  Aligned_cols=74  Identities=16%  Similarity=0.175  Sum_probs=49.8

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcC----CCCCceeEEEEcCCCc--ccHHHHHHHH
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS----ENEGSFDYAFVDADKD--NYCNYHERLM   87 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~----~~~~~fD~I~iD~~~~--~~~~~~~~~~   87 (157)
                      ..+|..+|-++...+..++.++..|....+. ...+..+.+..+....    .....+|+|++|...+  .-.++++.+.
T Consensus         4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr   82 (152)
T 3heb_A            4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEII-AFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK   82 (152)
T ss_dssp             -CEEEEECCCHHHHHHHHHHHHHTTCCCCEE-EESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred             CceEEEEeCCHHHHHHHHHHHHhCCCcceEE-EeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence            4689999999999999999999988743343 4567777766552000    0035799999997433  2345566655


Q ss_pred             h
Q 031568           88 K   88 (157)
Q Consensus        88 ~   88 (157)
                      +
T Consensus        83 ~   83 (152)
T 3heb_A           83 E   83 (152)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}

Probab=89.54  E-value=1.4  Score=28.25  Aligned_cols=67  Identities=21%  Similarity=0.250  Sum_probs=45.2

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM   87 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~   87 (157)
                      ...+|..+|-++......++.++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  -.++++.+.
T Consensus        13 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvl~D~~mp~~~g~~~~~~lr   81 (143)
T 3m6m_D           13 RSMRMLVADDHEANRMVLQRLLEKAGH--KVL-CVNGAEQVLDAMA-----EEDYDAVIVDLHMPGMNGLDMLKQLR   81 (143)
T ss_dssp             --CEEEEECSSHHHHHHHHHHHHC--C--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             ccceEEEEeCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence            457899999999999999999987765  343 4567777766553     457999999975432  234455443

>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E

Probab=89.50  E-value=2.5  Score=26.05  Aligned_cols=74  Identities=14%  Similarity=0.104  Sum_probs=49.7

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~   92 (157)
                      .+|..+|-++......+..++..|.  .+. ...+..+.+..+.     ..++|+|++|...+.  ..++++.+.+. .+
T Consensus         4 ~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~g~~~~~~l~~~-~~   74 (124)
T 1srr_A            4 EKILIVDDQSGIRILLNEVFNKEGY--QTF-QAANGLQALDIVT-----KERPDLVLLDMKIPGMDGIEILKRMKVI-DE   74 (124)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESCCTTCCHHHHHHHHHHH-CT
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHh-----ccCCCEEEEecCCCCCCHHHHHHHHHHh-CC
Confidence            5799999999999999999987665  343 5667777666553     346999999975432  24455555443 34


Q ss_pred             CeEEE
Q 031568           93 GGIAV   97 (157)
Q Consensus        93 gG~iv   97 (157)
                      ...++
T Consensus        75 ~~~ii   79 (124)
T 1srr_A           75 NIRVI   79 (124)
T ss_dssp             TCEEE
T ss_pred             CCCEE
Confidence            44333

>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1

Probab=89.48  E-value=2.7  Score=26.57  Aligned_cols=75  Identities=11%  Similarity=0.120  Sum_probs=50.0

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCC---C--CceeEEEEcCCCcc--cHHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN---E--GSFDYAFVDADKDN--YCNYHER   85 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~---~--~~fD~I~iD~~~~~--~~~~~~~   85 (157)
                      ...+|..+|-++......++.++..|....+ ....+..+.+..+......   .  ..+|+|++|...+.  ..+.++.
T Consensus         5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v-~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~   83 (149)
T 1k66_A            5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPI-YRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQE   83 (149)
T ss_dssp             TTSCEEEECCCHHHHHHHHHHHHHTTBCSCE-EEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHH
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHcCCCceE-EEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHH
Confidence            4568999999999999999999988764234 3456677776655310000   0  57999999975432  3445555


Q ss_pred             HHh
Q 031568           86 LMK   88 (157)
Q Consensus        86 ~~~   88 (157)
                      +.+
T Consensus        84 l~~   86 (149)
T 1k66_A           84 IKQ   86 (149)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            544

>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}

Probab=89.47  E-value=2.7  Score=26.55  Aligned_cols=76  Identities=11%  Similarity=0.232  Sum_probs=51.3

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~   91 (157)
                      ..+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+  .-.++++.+...- 
T Consensus         4 ~~~Ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvllD~~l~~~~g~~l~~~l~~~~-   74 (136)
T 2qzj_A            4 QTKILIIDGDKDNCQKLKGFLEEKGI--SID-LAYNCEEAIGKIF-----SNKYDLIFLEIILSDGDGWTLCKKIRNVT-   74 (136)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HCCCSEEEEESEETTEEHHHHHHHHHTTC-
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHccCC-
Confidence            56899999999999999999987665  353 5667777766553     35799999997433  2244555554432 


Q ss_pred             CCeEEEE
Q 031568           92 VGGIAVY   98 (157)
Q Consensus        92 ~gG~iv~   98 (157)
                      .-.++++
T Consensus        75 ~~~ii~l   81 (136)
T 2qzj_A           75 TCPIVYM   81 (136)
T ss_dssp             CCCEEEE
T ss_pred             CCCEEEE
Confidence            3344444

>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}

Probab=89.32  E-value=0.65  Score=29.46  Aligned_cols=55  Identities=5%  Similarity=-0.040  Sum_probs=41.3

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAG-VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      ...+|..+|-++...+..++.++..| +  .+. ...+..+.+..+.     ..++|+|++|..
T Consensus        13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~D~~   68 (135)
T 3snk_A           13 KRKQVALFSSDPNFKRDVATRLDALAIY--DVR-VSETDDFLKGPPA-----DTRPGIVILDLG   68 (135)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHHHTSSE--EEE-EECGGGGGGCCCT-----TCCCSEEEEEEE
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHhhcCCe--EEE-EeccHHHHHHHHh-----ccCCCEEEEeCC
Confidence            35689999999999999999999876 4  343 4556666554432     467999999964

>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}

Probab=89.17  E-value=2.9  Score=26.44  Aligned_cols=78  Identities=13%  Similarity=0.079  Sum_probs=50.2

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL   89 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~   89 (157)
                      ...+|..+|-++......+..++.. +.  .+-....+..+.+..+.     ...+|+|++|...+.  ..++++.+.+ 
T Consensus         8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~--~~v~~~~~~~~al~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~-   79 (143)
T 2qv0_A            8 EKMKVIIVEDEFLAQQELSWLINTHSQM--EIVGSFDDGLDVLKFLQ-----HNKVDAIFLDINIPSLDGVLLAQNISQ-   79 (143)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHHHHSCC--EEEEEESCHHHHHHHHH-----HCCCSEEEECSSCSSSCHHHHHHHHTT-
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHH-----hCCCCEEEEecCCCCCCHHHHHHHHHc-
Confidence            3568999999999999999999876 33  22224567777766554     356999999975432  3445555544 


Q ss_pred             ccCCe-EEEE
Q 031568           90 LKVGG-IAVY   98 (157)
Q Consensus        90 L~~gG-~iv~   98 (157)
                      ..+.. ++++
T Consensus        80 ~~~~~~ii~~   89 (143)
T 2qv0_A           80 FAHKPFIVFI   89 (143)
T ss_dssp             STTCCEEEEE
T ss_pred             cCCCceEEEE
Confidence            34444 3444

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=89.17  E-value=0.37  Score=35.85  Aligned_cols=39  Identities=21%  Similarity=0.422  Sum_probs=27.1

Q ss_pred             CceeEEEEcCCCc----ccHHHHH----------HHHhcccCCeEEEEecccC
Q 031568           65 GSFDYAFVDADKD----NYCNYHE----------RLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        65 ~~fD~I~iD~~~~----~~~~~~~----------~~~~~L~~gG~iv~~~~~~  103 (157)
                      +.||+||++...+    .|++.-+          .++++|+|||.+++..-.+
T Consensus       210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGy  262 (324)
T 3trk_A          210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGY  262 (324)
T ss_dssp             CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCC
T ss_pred             CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecc
Confidence            6899999997432    3444333          2346899999999976543

>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1

Probab=89.15  E-value=2.8  Score=26.21  Aligned_cols=68  Identities=12%  Similarity=0.064  Sum_probs=47.4

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL   89 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~   89 (157)
                      +.+|..+|-++......+..+...|.  .+. ...+..+.+..+.     ...+|+|++|...+.  -.++++.+.+.
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~g~~~~~~l~~~   72 (136)
T 1mvo_A            3 NKKILVVDDEESIVTLLQYNLERSGY--DVI-TASDGEEALKKAE-----TEKPDLIVLDVMLPKLDGIEVCKQLRQQ   72 (136)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCc--EEE-EecCHHHHHHHHh-----hcCCCEEEEecCCCCCCHHHHHHHHHcC
Confidence            35899999999999999999988765  343 4566777666553     346999999975432  24455555443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=89.15  E-value=5.4  Score=31.49  Aligned_cols=83  Identities=7%  Similarity=0.169  Sum_probs=50.8

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHH------------HHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   68 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~------------~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD   68 (157)
                      ||++++..++.  +-+|+++|++++.++..++.            +.+.  ..++++ ..|..+.+          ..-|
T Consensus        47 mG~~lA~~La~--G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~--~~~l~~-ttd~~ea~----------~~aD  111 (432)
T 3pid_A           47 VGLSNGVLIAQ--NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEK--PLNFRA-TTDKHDAY----------RNAD  111 (432)
T ss_dssp             HHHHHHHHHHT--TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS--CCCEEE-ESCHHHHH----------TTCS
T ss_pred             HHHHHHHHHHc--CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhc--cCCeEE-EcCHHHHH----------hCCC
Confidence            46666665544  78999999999998877652            1111  113433 34544433          2478


Q ss_pred             EEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEEe
Q 031568           69 YAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        69 ~I~iD~~~~-----------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      +||+-.+.+           ......+.+.+ |++|.++|..
T Consensus       112 vViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~  152 (432)
T 3pid_A          112 YVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIK  152 (432)
T ss_dssp             EEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEEC
T ss_pred             EEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEe
Confidence            998864322           13445566677 8999888754

>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A

Probab=89.04  E-value=1.6  Score=26.86  Aligned_cols=66  Identities=15%  Similarity=0.133  Sum_probs=45.9

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      .+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  ..+.++.+.+
T Consensus         2 ~~ilivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~   69 (124)
T 1mb3_A            2 KKVLIVEDNELNMKLFHDLLEAQGY--ETL-QTREGLSALSIAR-----ENKPDLILMDIQLPEISGLEVTKWLKE   69 (124)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHH-----HHCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHcCc--EEE-EeCCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence            4789999999999999999988775  343 4567777665543     346999999975432  2345555544

>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A

Probab=89.02  E-value=4  Score=27.80  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=48.6

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL   89 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~   89 (157)
                      ..+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  ..+.++.+.+.
T Consensus         4 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvl~D~~lp~~~g~~~~~~l~~~   73 (208)
T 1yio_A            4 KPTVFVVDDDMSVREGLRNLLRSAGF--EVE-TFDCASTFLEHRR-----PEQHGCLVLDMRMPGMSGIELQEQLTAI   73 (208)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHCC-----TTSCEEEEEESCCSSSCHHHHHHHHHHT
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCc--eEE-EcCCHHHHHHhhh-----ccCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence            56899999999999999999987765  344 4567777776542     457999999975432  34455555443

>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A

Probab=88.97  E-value=4.3  Score=28.13  Aligned_cols=77  Identities=10%  Similarity=0.069  Sum_probs=52.2

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~   91 (157)
                      ..+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+  .-.+.++.+.+.-.
T Consensus         7 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~~~dlvllD~~l~~~~g~~~~~~l~~~~~   78 (233)
T 1ys7_A            7 SPRVLVVDDDSDVLASLERGLRLSGF--EVA-TAVDGAEALRSAT-----ENRPDAIVLDINMPVLDGVSVVTALRAMDN   78 (233)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESSCSSSCHHHHHHHHHHTTC
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence            45899999999999999999988765  343 5667777776554     35799999997543  23445555544322


Q ss_pred             CCeEEEE
Q 031568           92 VGGIAVY   98 (157)
Q Consensus        92 ~gG~iv~   98 (157)
                      .--++++
T Consensus        79 ~~~ii~l   85 (233)
T 1ys7_A           79 DVPVCVL   85 (233)
T ss_dssp             CCCEEEE
T ss_pred             CCCEEEE
Confidence            2334444

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=88.94  E-value=0.065  Score=40.68  Aligned_cols=52  Identities=8%  Similarity=-0.056  Sum_probs=39.9

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   54 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l   54 (157)
                      +|-.|+..++..-+.+.+++|+++..++.+++++++.+..  ...+.+|+.++.
T Consensus       261 ~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i~  312 (323)
T 1boo_A          261 GGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRIL  312 (323)
T ss_dssp             CTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Confidence            4667777777556899999999999999999999877653  455566666553

>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}

Probab=88.92  E-value=3.2  Score=26.64  Aligned_cols=76  Identities=11%  Similarity=0.020  Sum_probs=49.9

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcCCCC-CceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENE-GSFDYAFVDADKD--NYCNYHERLMKL   89 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~~~-~~fD~I~iD~~~~--~~~~~~~~~~~~   89 (157)
                      ..+|..+|-++......+..++.. |.  ..-....+..+.+..+.     . ..+|+|++|...+  ...++++.+.+.
T Consensus         3 ~~~iLivdd~~~~~~~l~~~L~~~~g~--~~v~~~~~~~~a~~~l~-----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~   75 (154)
T 2qsj_A            3 LTVVLIVDDHHLIRAGAKNLLEGAFSG--MRVEGAETVSDALAFLE-----ADNTVDLILLDVNLPDAEAIDGLVRLKRF   75 (154)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHHHCTT--EEEEEESSHHHHHHHHH-----TTCCCSEEEECC------CHHHHHHHHHH
T ss_pred             ccEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEecCHHHHHHHHh-----ccCCCCEEEEeCCCCCCchHHHHHHHHHh
Confidence            357999999999999999999887 54  22345667777776664     4 6799999997533  234455555544


Q ss_pred             ccCCeEEE
Q 031568           90 LKVGGIAV   97 (157)
Q Consensus        90 L~~gG~iv   97 (157)
                       .++..++
T Consensus        76 -~~~~~ii   82 (154)
T 2qsj_A           76 -DPSNAVA   82 (154)
T ss_dssp             -CTTSEEE
T ss_pred             -CCCCeEE
Confidence             3444443

>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*

Probab=88.78  E-value=4.3  Score=27.94  Aligned_cols=76  Identities=9%  Similarity=0.075  Sum_probs=51.0

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~   92 (157)
                      .+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  -.+.++.+.+.-..
T Consensus         3 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~   74 (225)
T 1kgs_A            3 VRVLVVEDERDLADLITEALKKEMF--TVD-VCYDGEEGMYMAL-----NEPFDVVILDIMLPVHDGWEILKSMRESGVN   74 (225)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHHTTCC
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence            4789999999999999999988765  353 5667777766553     357999999975432  34455555443222


Q ss_pred             CeEEEE
Q 031568           93 GGIAVY   98 (157)
Q Consensus        93 gG~iv~   98 (157)
                      --++++
T Consensus        75 ~~ii~l   80 (225)
T 1kgs_A           75 TPVLML   80 (225)
T ss_dssp             CCEEEE
T ss_pred             CCEEEE
Confidence            334444

>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A

Probab=88.61  E-value=4.1  Score=29.16  Aligned_cols=67  Identities=12%  Similarity=0.181  Sum_probs=48.2

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~   88 (157)
                      +.+|..+|-++......+..++..|.  ++. ...+..+.+..+.     ...||+|++|...+  .-.+..+.+.+
T Consensus       129 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~l~-----~~~~dlvl~D~~mp~~~G~~l~~~ir~  197 (254)
T 2ayx_A          129 DMMILVVDDHPINRRLLADQLGSLGY--QCK-TANDGVDALNVLS-----KNHIDIVLSDVNMPNMDGYRLTQRIRQ  197 (254)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHHTS--EEE-EECCSHHHHHHHH-----HSCCSEEEEEESSCSSCCHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence            46899999999999999999998886  353 5567777766554     35699999996433  22445555544

>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}

Probab=88.58  E-value=3.2  Score=26.22  Aligned_cols=70  Identities=16%  Similarity=0.134  Sum_probs=48.8

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL   89 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~   89 (157)
                      ..+|..+|-++...+..++.++..|.  .+. ...+..+.+..+..   ....+|+|++|...+  ...++++.+.+.
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~a~~~~~~---~~~~~dlvi~d~~l~~~~g~~~~~~l~~~   74 (143)
T 3jte_A            3 LAKILVIDDESTILQNIKFLLEIDGN--EVL-TASSSTEGLRIFTE---NCNSIDVVITDMKMPKLSGMDILREIKKI   74 (143)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHHH---TTTTCCEEEEESCCSSSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCc--eEE-EeCCHHHHHHHHHh---CCCCCCEEEEeCCCCCCcHHHHHHHHHHh
Confidence            46899999999999999999998775  343 55677776665531   135799999997543  234556665544

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=88.53  E-value=0.083  Score=39.80  Aligned_cols=80  Identities=16%  Similarity=0.134  Sum_probs=49.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH----HHHHhhcCCCCCceeEEEEcCCCc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV----LDQLLKYSENEGSFDYAFVDADKD   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----l~~~~~~~~~~~~fD~I~iD~~~~   77 (157)
                      |+.++.+++.. +.+|++++.+++..+.+++    .|.+ .  ++  |..+.    +..+     ..+.+|+||-.... 
T Consensus       164 G~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----lGa~-~--v~--~~~~~~~~~~~~~-----~~~~~d~vid~~g~-  227 (330)
T 1tt7_A          164 GGIAVSMLNKR-GYDVVASTGNREAADYLKQ----LGAS-E--VI--SREDVYDGTLKAL-----SKQQWQGAVDPVGG-  227 (330)
T ss_dssp             HHHHHHHHHHH-TCCEEEEESSSSTHHHHHH----HTCS-E--EE--EHHHHCSSCCCSS-----CCCCEEEEEESCCT-
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCc-E--EE--ECCCchHHHHHHh-----hcCCccEEEECCcH-
Confidence            44455556543 5789999999888887764    4543 2  22  22111    1111     12469998754432 


Q ss_pred             ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                         ..++.+.+.++++|.++.-.
T Consensus       228 ---~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          228 ---KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             ---HHHHHHHTTEEEEEEEEECC
T ss_pred             ---HHHHHHHHhhcCCCEEEEEe
Confidence               36788899999999998743

>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1

Probab=87.75  E-value=3.3  Score=25.31  Aligned_cols=66  Identities=11%  Similarity=0.124  Sum_probs=46.0

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      .+|..+|-++...+..++.++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  -.+..+.+.+
T Consensus         3 ~~ilivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~~~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~   70 (122)
T 1zgz_A            3 HHIVIVEDEPVTQARLQSYFTQEGY--TVS-VTASGAGLREIMQ-----NQSVDLILLDINLPDENGLMLTRALRE   70 (122)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred             cEEEEEECCHHHHHHHHHHHHHCCC--eEE-EecCHHHHHHHHh-----cCCCCEEEEeCCCCCCChHHHHHHHHh
Confidence            4789999999999999999988765  343 4566666665443     356999999975432  2445555554

>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}

Probab=87.75  E-value=3.9  Score=26.22  Aligned_cols=75  Identities=9%  Similarity=0.037  Sum_probs=48.8

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~   91 (157)
                      ..+|..+|-++...+..++.++. +.  .+. ...+..+.+..+..    ..+||+|++|...+  ...++++.+.+. .
T Consensus         4 ~~~ILivdd~~~~~~~l~~~L~~-~~--~v~-~~~~~~~a~~~l~~----~~~~dlvi~D~~l~~~~g~~~~~~l~~~-~   74 (151)
T 3kcn_A            4 NERILLVDDDYSLLNTLKRNLSF-DF--EVT-TCESGPEALACIKK----SDPFSVIMVDMRMPGMEGTEVIQKARLI-S   74 (151)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTT-TS--EEE-EESSHHHHHHHHHH----SCCCSEEEEESCCSSSCHHHHHHHHHHH-C
T ss_pred             CCeEEEEeCCHHHHHHHHHHhcc-Cc--eEE-EeCCHHHHHHHHHc----CCCCCEEEEeCCCCCCcHHHHHHHHHhc-C
Confidence            46899999999999999888854 43  343 55677777766542    34589999997543  234555555543 3


Q ss_pred             CCeEEE
Q 031568           92 VGGIAV   97 (157)
Q Consensus        92 ~gG~iv   97 (157)
                      +...++
T Consensus        75 ~~~~ii   80 (151)
T 3kcn_A           75 PNSVYL   80 (151)
T ss_dssp             SSCEEE
T ss_pred             CCcEEE
Confidence            444333

>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}

Probab=87.70  E-value=3.6  Score=25.75  Aligned_cols=75  Identities=11%  Similarity=0.010  Sum_probs=48.8

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~   92 (157)
                      .+|..+|-++...+..+..++..+.. .+-....+..+.+..+.     ..++|+|++|...+.  -.++++.+.+. .+
T Consensus         4 ~~Ilivdd~~~~~~~l~~~l~~~~~~-~~v~~~~~~~~al~~~~-----~~~~dlvilD~~lp~~~g~~~~~~l~~~-~~   76 (133)
T 3b2n_A            4 TSLIIAEDQNMLRQAMVQLIKLHGDF-EILADTDNGLDAMKLIE-----EYNPNVVILDIEMPGMTGLEVLAEIRKK-HL   76 (133)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHSSE-EEEEEESCHHHHHHHHH-----HHCCSEEEECSSCSSSCHHHHHHHHHHT-TC
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCc-EEEEEcCCHHHHHHHHh-----hcCCCEEEEecCCCCCCHHHHHHHHHHH-CC
Confidence            47899999999999999988876521 22234567777666553     346999999975432  34555655543 34


Q ss_pred             CeEE
Q 031568           93 GGIA   96 (157)
Q Consensus        93 gG~i   96 (157)
                      ...+
T Consensus        77 ~~~i   80 (133)
T 3b2n_A           77 NIKV   80 (133)
T ss_dssp             SCEE
T ss_pred             CCcE
Confidence            4433

>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*

Probab=87.67  E-value=3.2  Score=25.15  Aligned_cols=74  Identities=15%  Similarity=0.078  Sum_probs=48.8

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccCC
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVG   93 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~g   93 (157)
                      +|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  -.+.++.+.+ ..+-
T Consensus         3 ~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~g~~~~~~l~~-~~~~   73 (120)
T 2a9o_A            3 KILIVDDEKPISDIIKFNMTKEGY--EVV-TAFNGREALEQFE-----AEQPDIIILDLMLPEIDGLEVAKTIRK-TSSV   73 (120)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEECSSCSSSCHHHHHHHHHH-HCCC
T ss_pred             eEEEEcCCHHHHHHHHHHHHhcCc--EEE-EecCHHHHHHHHH-----hCCCCEEEEeccCCCCCHHHHHHHHHh-CCCC
Confidence            688999999999999999988765  343 4567777665553     346999999975432  2345555544 2333


Q ss_pred             eEEEE
Q 031568           94 GIAVY   98 (157)
Q Consensus        94 G~iv~   98 (157)
                      .++++
T Consensus        74 ~ii~~   78 (120)
T 2a9o_A           74 PILML   78 (120)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            34444

>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A

Probab=87.46  E-value=3.4  Score=25.25  Aligned_cols=68  Identities=12%  Similarity=0.058  Sum_probs=47.1

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL   89 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~   89 (157)
                      ..+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  -.+.++.+.+.
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~~   72 (123)
T 1xhf_A            3 TPHILIVEDELVTRNTLKSIFEAEGY--DVF-EATDGAEMHQILS-----EYDINLVIMDINLPGKNGLLLARELREQ   72 (123)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred             CceEEEEeCCHHHHHHHHHHHhhCCc--EEE-EeCCHHHHHHHHh-----cCCCCEEEEcCCCCCCCHHHHHHHHHhC
Confidence            45799999999999999999987665  343 4566777666553     357999999975432  23455555443

>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}

Probab=87.42  E-value=6.1  Score=28.09  Aligned_cols=67  Identities=18%  Similarity=0.106  Sum_probs=47.8

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      ..+|..+|-++...+..+..++..|.  .+ ....+..+.+..+.     ...+|+|++|...+.  -.++++.+.+
T Consensus        37 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~~~-----~~~~DlvllD~~lp~~~G~~l~~~lr~  105 (249)
T 3q9s_A           37 EQRILVIEDDHDIANVLRMDLTDAGY--VV-DHADSAMNGLIKAR-----EDHPDLILLDLGLPDFDGGDVVQRLRK  105 (249)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTC--EE-EEESSHHHHHHHHH-----HSCCSEEEEECCSCHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCC--EE-EEeCCHHHHHHHHh-----cCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence            46899999999999999999987764  33 35667777776654     357999999986543  2334455444

>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}

Probab=87.36  E-value=3.9  Score=25.76  Aligned_cols=75  Identities=16%  Similarity=0.125  Sum_probs=49.3

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc-CCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-SENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~-~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      ...+|..+|-++...+..++.++..|....+. ...+..+.+..+... ......+|+|++|...+.  ..++++.+.+
T Consensus         6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~   83 (143)
T 2qvg_A            6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIE-IAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRD   83 (143)
T ss_dssp             -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTT
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEE-EECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHc
Confidence            35679999999999999999999888643443 456777776655310 000157999999975432  3445555544

>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A

Probab=87.26  E-value=3.5  Score=25.09  Aligned_cols=75  Identities=19%  Similarity=0.005  Sum_probs=49.0

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccCC
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVG   93 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~g   93 (157)
                      +|..+|-++......++.++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  -.+.++.+.+.-..-
T Consensus         2 ~ilivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~a~~~~~-----~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~   73 (121)
T 2pl1_A            2 RVLVVEDNALLRHHLKVQIQDAGH--QVD-DAEDAKEADYYLN-----EHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSL   73 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHHTTCCS
T ss_pred             eEEEEeCcHHHHHHHHHHHhhcCC--EEE-EeCCHHHHHHHHh-----ccCCCEEEEecCCCCCCHHHHHHHHHhcCCCC
Confidence            688899999999999999988775  343 4566666665553     356999999975432  234555554433233


Q ss_pred             eEEEE
Q 031568           94 GIAVY   98 (157)
Q Consensus        94 G~iv~   98 (157)
                      .++++
T Consensus        74 ~ii~~   78 (121)
T 2pl1_A           74 PILVL   78 (121)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            34444

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=87.20  E-value=3.9  Score=32.06  Aligned_cols=86  Identities=6%  Similarity=0.024  Sum_probs=50.3

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHH------------HHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   68 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~------------~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD   68 (157)
                      ||.+++..++. .+.+|+++|++++.++..++.            +.+.-...++.+ ..|..+.+.          ..|
T Consensus        11 vG~~~A~~la~-~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~-t~~~~~~~~----------~aD   78 (436)
T 1mv8_A           11 VGAVCAGCLSA-RGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKAVL----------DSD   78 (436)
T ss_dssp             THHHHHHHHHH-TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHHH----------TCS
T ss_pred             HHHHHHHHHHH-CCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE-eCCHHHHhc----------cCC
Confidence            56666554444 356899999999988766541            110000113433 344444332          479


Q ss_pred             EEEEcCCCcc----------cHHHHHHHHhcccC---CeEEEE
Q 031568           69 YAFVDADKDN----------YCNYHERLMKLLKV---GGIAVY   98 (157)
Q Consensus        69 ~I~iD~~~~~----------~~~~~~~~~~~L~~---gG~iv~   98 (157)
                      +||+-.+.+.          ....++.+.+.+++   +.+++.
T Consensus        79 vviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~  121 (436)
T 1mv8_A           79 VSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV  121 (436)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE
T ss_pred             EEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE
Confidence            9998654332          56667777778888   666654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=86.68  E-value=1.7  Score=29.49  Aligned_cols=74  Identities=12%  Similarity=0.106  Sum_probs=42.7

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~   91 (157)
                      +.+|+.+|.+++.++.+++    .|    +.++.+|+.+  .+....    .-..+|+|++-.+........-...+.+.
T Consensus        63 g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~----~~~~ad~vi~~~~~~~~~~~~~~~~~~~~  130 (183)
T 3c85_A           63 GKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERIL----DTGHVKLVLLAMPHHQGNQTALEQLQRRN  130 (183)
T ss_dssp             CSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBC----SCCCCCEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHHHHC
Confidence            6789999999988766543    33    3467777643  233210    02469999986543221112222345566


Q ss_pred             CCeEEEEe
Q 031568           92 VGGIAVYD   99 (157)
Q Consensus        92 ~gG~iv~~   99 (157)
                      |++.+++.
T Consensus       131 ~~~~ii~~  138 (183)
T 3c85_A          131 YKGQIAAI  138 (183)
T ss_dssp             CCSEEEEE
T ss_pred             CCCEEEEE
Confidence            67777763

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=86.48  E-value=2.5  Score=32.35  Aligned_cols=75  Identities=5%  Similarity=-0.036  Sum_probs=48.8

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHH------cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL   86 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~------~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~   86 (157)
                      .+.+|+.++.+++.++..++.-..      ..+.+++.+ ..|..+.+          ...|+||+-.+.....+.++.+
T Consensus        51 ~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea~----------~~aDvVilaVp~~~~~~vl~~i  119 (356)
T 3k96_A           51 KGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKASL----------EGVTDILIVVPSFAFHEVITRM  119 (356)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHHH----------TTCCEEEECCCHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHHH----------hcCCEEEECCCHHHHHHHHHHH
Confidence            356899999999988776653211      112223443 34554433          2589999877655566778888


Q ss_pred             HhcccCCeEEEE
Q 031568           87 MKLLKVGGIAVY   98 (157)
Q Consensus        87 ~~~L~~gG~iv~   98 (157)
                      .+.++++.+++.
T Consensus       120 ~~~l~~~~ivvs  131 (356)
T 3k96_A          120 KPLIDAKTRIAW  131 (356)
T ss_dssp             GGGCCTTCEEEE
T ss_pred             HHhcCCCCEEEE
Confidence            888988887764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=86.45  E-value=4.2  Score=32.28  Aligned_cols=30  Identities=13%  Similarity=-0.065  Sum_probs=22.7

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGL   31 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~   31 (157)
                      +|+.++...+. .+-+|+++|+|++.++..+
T Consensus        32 VGLp~A~~~A~-~G~~V~g~Did~~kV~~ln   61 (444)
T 3vtf_A           32 VGVVHAVGFAL-LGHRVVGYDVNPSIVERLR   61 (444)
T ss_dssp             HHHHHHHHHHH-HTCEEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHh-CCCcEEEEECCHHHHHHHH
Confidence            36777775553 2779999999999988764

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=86.33  E-value=2.8  Score=32.18  Aligned_cols=70  Identities=10%  Similarity=-0.006  Sum_probs=46.1

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV   92 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~   92 (157)
                      .+.+|+.+|.+++.++.+.+    .|..     ...+..+.+..       ....|+||+-.+.....+.++.+.+.|++
T Consensus        44 ~G~~V~v~dr~~~~~~~l~~----~g~~-----~~~s~~e~~~~-------a~~~DvVi~~vp~~~v~~vl~~l~~~l~~  107 (358)
T 4e21_A           44 GGHECVVYDLNVNAVQALER----EGIA-----GARSIEEFCAK-------LVKPRVVWLMVPAAVVDSMLQRMTPLLAA  107 (358)
T ss_dssp             TTCEEEEECSCHHHHHHHHT----TTCB-----CCSSHHHHHHH-------SCSSCEEEECSCGGGHHHHHHHHGGGCCT
T ss_pred             CCCEEEEEeCCHHHHHHHHH----CCCE-----EeCCHHHHHhc-------CCCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence            36789999999988765543    2321     23455555543       23569999876544556677777788888


Q ss_pred             CeEEEE
Q 031568           93 GGIAVY   98 (157)
Q Consensus        93 gG~iv~   98 (157)
                      |.+|+-
T Consensus       108 g~iiId  113 (358)
T 4e21_A          108 NDIVID  113 (358)
T ss_dssp             TCEEEE
T ss_pred             CCEEEe
Confidence            777654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=86.32  E-value=2.1  Score=32.86  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=49.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--c
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--Y   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~   79 (157)
                      |..++..++.. +.+|+.+|.+++..+.+++.   .+.  .+.....+..+. .+..      ..+|+|+.......  .
T Consensus       178 G~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~---~g~--~~~~~~~~~~~l-~~~~------~~~DvVi~~~g~~~~~~  244 (369)
T 2eez_A          178 GTNAAKIALGM-GAQVTILDVNHKRLQYLDDV---FGG--RVITLTATEANI-KKSV------QHADLLIGAVLVPGAKA  244 (369)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---TTT--SEEEEECCHHHH-HHHH------HHCSEEEECCC------
T ss_pred             HHHHHHHHHhC-CCEEEEEECCHHHHHHHHHh---cCc--eEEEecCCHHHH-HHHH------hCCCEEEECCCCCcccc
Confidence            44445555554 66999999999887766542   333  243333343333 2221      35899987654221  1


Q ss_pred             HH-HHHHHHhcccCCeEEEEec
Q 031568           80 CN-YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        80 ~~-~~~~~~~~L~~gG~iv~~~  100 (157)
                      .. +.+...+.+++||+|+.-.
T Consensus       245 ~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          245 PKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             -CCSCHHHHTTSCTTCEEEECC
T ss_pred             chhHHHHHHHhhcCCCEEEEEe
Confidence            11 2456678889999887533

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=86.19  E-value=1.8  Score=32.24  Aligned_cols=78  Identities=12%  Similarity=0.019  Sum_probs=46.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-HHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |+.+..+++.. +++|+++. +++..+.+    ++.|.+.   ++..+-.+ +...       -..+|+||-...    .
T Consensus       166 G~~a~q~a~~~-Ga~vi~~~-~~~~~~~~----~~lGa~~---~i~~~~~~~~~~~-------~~g~D~v~d~~g----~  225 (321)
T 3tqh_A          166 GHLAIQLAKQK-GTTVITTA-SKRNHAFL----KALGAEQ---CINYHEEDFLLAI-------STPVDAVIDLVG----G  225 (321)
T ss_dssp             HHHHHHHHHHT-TCEEEEEE-CHHHHHHH----HHHTCSE---EEETTTSCHHHHC-------CSCEEEEEESSC----H
T ss_pred             HHHHHHHHHHc-CCEEEEEe-ccchHHHH----HHcCCCE---EEeCCCcchhhhh-------ccCCCEEEECCC----c
Confidence            55555666654 67899887 44445444    4456542   23222222 2221       246999885433    2


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++.+.+.|+++|.++.-
T Consensus       226 ~~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          226 DVGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             HHHHHHGGGEEEEEEEEEC
T ss_pred             HHHHHHHHhccCCCEEEEe
Confidence            2347889999999999874

>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A

Probab=86.13  E-value=4.5  Score=25.90  Aligned_cols=75  Identities=13%  Similarity=0.182  Sum_probs=48.5

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc--CCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY--SENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~--~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      +..+|..+|-++......+..++..|....+ ....+..+.+..+...  ......+|+|++|...+.  -.++++.+.+
T Consensus         7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v-~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~   85 (149)
T 1i3c_A            7 PPKVILLVEDSKADSRLVQEVLKTSTIDHEL-IILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQ   85 (149)
T ss_dssp             CCEEEEEECCCHHHHHHHHHHHHSCCSCEEE-EEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHhcCCCccE-EEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence            3568999999999999999999877653223 3556777776655310  000136999999975432  3445555544

>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A

Probab=86.09  E-value=4.3  Score=25.01  Aligned_cols=68  Identities=6%  Similarity=0.057  Sum_probs=46.8

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      ..+|..+|-++......+..++..|.. .+ ....+..+.+..+.     ...+|+|++|...+.  -.++++.+.+
T Consensus         6 ~~~ilivdd~~~~~~~l~~~L~~~g~~-~v-~~~~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~g~~~~~~l~~   75 (129)
T 1p6q_A            6 KIKVLIVDDQVTSRLLLGDALQQLGFK-QI-TAAGDGEQGMKIMA-----QNPHHLVISDFNMPKMDGLGLLQAVRA   75 (129)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHTTTCS-CE-ECCSSHHHHHHHHH-----TSCCSEEEECSSSCSSCHHHHHHHHTT
T ss_pred             cCeEEEEcCCHHHHHHHHHHHHHCCCc-EE-EecCCHHHHHHHHH-----cCCCCEEEEeCCCCCCCHHHHHHHHhc
Confidence            457999999999999999999877652 23 23556777666553     457999999975432  2344555443

>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}

Probab=86.07  E-value=5.5  Score=27.70  Aligned_cols=76  Identities=8%  Similarity=-0.039  Sum_probs=49.3

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcccCC
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG   93 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~g   93 (157)
                      +|..+|-++...+..+..++..+.- .+.....+..+.+..+.     ...+|+|++|...+  .-.+.++.+.+. .|+
T Consensus         3 ~ILivdd~~~~~~~l~~~L~~~~~~-~vv~~~~~~~~al~~l~-----~~~~dlvllD~~lp~~~g~~~~~~lr~~-~~~   75 (225)
T 3c3w_A            3 KVFLVDDHEVVRRGLVDLLGADPEL-DVVGEAGSVAEAMARVP-----AARPDVAVLDVRLPDGNGIELCRDLLSR-MPD   75 (225)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTCTTE-EEEEEESSHHHHHHHHH-----HHCCSEEEECSEETTEEHHHHHHHHHHH-CTT
T ss_pred             EEEEEcCCHHHHHHHHHHHhcCCCc-EEEEEECCHHHHHHHHh-----hcCCCEEEEeCCCCCCCHHHHHHHHHHh-CCC
Confidence            6889999999999999998875411 22224677777766553     34699999997433  234455555443 455


Q ss_pred             eEEEE
Q 031568           94 GIAVY   98 (157)
Q Consensus        94 G~iv~   98 (157)
                      .-+++
T Consensus        76 ~~ii~   80 (225)
T 3c3w_A           76 LRCLI   80 (225)
T ss_dssp             CEEEE
T ss_pred             CcEEE
Confidence            54444

>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}

Probab=86.03  E-value=3.1  Score=26.26  Aligned_cols=66  Identities=14%  Similarity=0.129  Sum_probs=46.2

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM   87 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~   87 (157)
                      ..+|..+|-++......+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  -.++++.+.
T Consensus        10 ~~~iLivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~al~~l~-----~~~~dlvllD~~lp~~~g~~~~~~l~   77 (140)
T 3c97_A           10 PLSVLIAEDNDICRLVAAKALEKCTN--DIT-VVTNGLQALQAYQ-----NRQFDVIIMDIQMPVMDGLEAVSEIR   77 (140)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHTTTCS--EEE-EESSHHHHHHHHH-----HSCCSEEEECTTCCSSCHHHHHHHHH
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHcCC--ceE-EECCHHHHHHHHh-----cCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence            35899999999999999998877654  344 3577777776654     357999999975432  234444444

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=85.94  E-value=6.3  Score=28.82  Aligned_cols=86  Identities=12%  Similarity=0.095  Sum_probs=52.2

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc---------CCC--------CcEEEEEccHHHHHHHHhhcCCC
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA---------GVD--------HKINFIESEALSVLDQLLKYSEN   63 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~---------~~~--------~~i~~~~~d~~~~l~~~~~~~~~   63 (157)
                      ||.+.+..++. .+.+|+.+|.+++.++.+++.+.+.         ++.        .++.. ..|..+.+         
T Consensus        15 mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~~---------   83 (283)
T 4e12_A           15 LGSQIAFQTAF-HGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQAV---------   83 (283)
T ss_dssp             HHHHHHHHHHH-TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHHT---------
T ss_pred             HHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHHh---------
Confidence            34344443333 3779999999999998887764321         111        12332 23443321         


Q ss_pred             CCceeEEEEcCCCc--ccHHHHHHHHhcccCCeEEEE
Q 031568           64 EGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        64 ~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~gG~iv~   98 (157)
                       ...|+|+.-....  ....+++.+.+.++++.+++.
T Consensus        84 -~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s  119 (283)
T 4e12_A           84 -KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFAT  119 (283)
T ss_dssp             -TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             -ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEE
Confidence             3589999876433  345667777788888887764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=85.74  E-value=1.7  Score=32.62  Aligned_cols=66  Identities=14%  Similarity=0.139  Sum_probs=44.3

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-HHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccCC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG   93 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~g   93 (157)
                      .+|+++|.+++.++.+++    .|..+.   ...+..+ .+          ...|+||+-.+.....+.++.+.+.++++
T Consensus        59 ~~V~~~dr~~~~~~~a~~----~G~~~~---~~~~~~~~~~----------~~aDvVilavp~~~~~~vl~~l~~~l~~~  121 (314)
T 3ggo_A           59 GKIYGYDINPESISKAVD----LGIIDE---GTTSIAKVED----------FSPDFVMLSSPVRTFREIAKKLSYILSED  121 (314)
T ss_dssp             SEEEEECSCHHHHHHHHH----TTSCSE---EESCTTGGGG----------GCCSEEEECSCGGGHHHHHHHHHHHSCTT
T ss_pred             CEEEEEECCHHHHHHHHH----CCCcch---hcCCHHHHhh----------ccCCEEEEeCCHHHHHHHHHHHhhccCCC
Confidence            389999999988776643    344221   2234333 21          35899998876666677788888888888


Q ss_pred             eEEE
Q 031568           94 GIAV   97 (157)
Q Consensus        94 G~iv   97 (157)
                      .+++
T Consensus       122 ~iv~  125 (314)
T 3ggo_A          122 ATVT  125 (314)
T ss_dssp             CEEE
T ss_pred             cEEE
Confidence            7654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=85.51  E-value=3.9  Score=26.22  Aligned_cols=50  Identities=10%  Similarity=0.129  Sum_probs=34.5

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCC
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      .+.+|+.+|.+++.++.+++    .    .+.++.+|+.+.  +...     .-..+|.|++-.+
T Consensus        28 ~g~~V~~id~~~~~~~~~~~----~----~~~~~~gd~~~~~~l~~~-----~~~~~d~vi~~~~   79 (141)
T 3llv_A           28 AGKKVLAVDKSKEKIELLED----E----GFDAVIADPTDESFYRSL-----DLEGVSAVLITGS   79 (141)
T ss_dssp             TTCCEEEEESCHHHHHHHHH----T----TCEEEECCTTCHHHHHHS-----CCTTCSEEEECCS
T ss_pred             CCCeEEEEECCHHHHHHHHH----C----CCcEEECCCCCHHHHHhC-----CcccCCEEEEecC
Confidence            37799999999998776654    2    356788887653  3332     1356999998665

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=85.45  E-value=12  Score=29.56  Aligned_cols=86  Identities=13%  Similarity=0.155  Sum_probs=49.1

Q ss_pred             CcccHHHHHh-hCCCcEEEEEeCChhHHHHHHH------------HHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCce
Q 031568            1 MHLPTKLFMT-GNKILQITAIDVNRETYEIGLP------------IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   67 (157)
Q Consensus         1 ~g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~------------~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~f   67 (157)
                      ||.+++..++ ..++.+|+++|++++.++..++            .+++. ...++++ ..|..+.+.          ..
T Consensus        16 mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~-~~~~~~~-t~~~~e~~~----------~a   83 (467)
T 2q3e_A           16 VGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESC-RGKNLFF-STNIDDAIK----------EA   83 (467)
T ss_dssp             THHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHH-BTTTEEE-ESCHHHHHH----------HC
T ss_pred             HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHh-hcCCEEE-ECCHHHHHh----------cC
Confidence            5666665444 3347799999999998876532            12111 1113433 345444332          47


Q ss_pred             eEEEEcCCCcc---------------cHHHHHHHHhcccCCeEEEE
Q 031568           68 DYAFVDADKDN---------------YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        68 D~I~iD~~~~~---------------~~~~~~~~~~~L~~gG~iv~   98 (157)
                      |+||+-.+.+.               .....+.+.+.+++|.+++.
T Consensus        84 DvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~  129 (467)
T 2q3e_A           84 DLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTE  129 (467)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEE
T ss_pred             CEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEE
Confidence            99998642111               23455666778888777654

>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}

Probab=85.15  E-value=7.4  Score=26.86  Aligned_cols=75  Identities=8%  Similarity=0.087  Sum_probs=50.6

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~   92 (157)
                      .+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+  .-.+.++.+.+. ..
T Consensus         5 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvllD~~l~~~~g~~~~~~l~~~-~~   75 (230)
T 2oqr_A            5 TSVLIVEDEESLADPLAFLLRKEGF--EAT-VVTDGPAALAEFD-----RAGADIVLLDLMLPGMSGTDVCKQLRAR-SS   75 (230)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EECSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHHH-CS
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----ccCCCEEEEECCCCCCCHHHHHHHHHcC-CC
Confidence            5799999999999999999988765  343 5567777766553     34699999997543  234455555543 22


Q ss_pred             CeEEEE
Q 031568           93 GGIAVY   98 (157)
Q Consensus        93 gG~iv~   98 (157)
                      --++++
T Consensus        76 ~~ii~l   81 (230)
T 2oqr_A           76 VPVIMV   81 (230)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            334444

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=85.06  E-value=9.1  Score=27.82  Aligned_cols=68  Identities=7%  Similarity=0.036  Sum_probs=46.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH------HHHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |..++...+. .+++|+.++.+++.++.+.+.+...|.  ++..+.+|..+      .+.+..+   ..++.|.++.++.
T Consensus        22 G~aia~~la~-~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~---~~G~iDiLVNNAG   95 (255)
T 4g81_D           22 GFAYAEGLAA-AGARVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDA---EGIHVDILINNAG   95 (255)
T ss_dssp             HHHHHHHHHH-TTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHH---TTCCCCEEEECCC
T ss_pred             HHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHH---HCCCCcEEEECCC
Confidence            3344443333 489999999999998888888877764  67888888654      2233322   2468999998763

>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A

Probab=85.03  E-value=7.2  Score=26.64  Aligned_cols=78  Identities=14%  Similarity=-0.011  Sum_probs=49.9

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~   91 (157)
                      ..+|..+|-++......+..++..+- -.+-....+..+.+..+.     ...+|+|++|...+.  -.+.++.+.+. .
T Consensus         5 ~~~ilivdd~~~~~~~l~~~L~~~~~-~~vv~~~~~~~~al~~~~-----~~~~dlvllD~~lp~~~g~~~~~~lr~~-~   77 (215)
T 1a04_A            5 PATILLIDDHPMLRTGVKQLISMAPD-ITVVGEASNGEQGIELAE-----SLDPDLILLDLNMPGMNGLETLDKLREK-S   77 (215)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHTTCTT-EEEEEEESSHHHHHHHHH-----HHCCSEEEEETTSTTSCHHHHHHHHHHS-C
T ss_pred             ceEEEEECCCHHHHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCcHHHHHHHHHHh-C
Confidence            45899999999999988888876531 123234667777766553     346999999975432  34455555543 3


Q ss_pred             CC-eEEEE
Q 031568           92 VG-GIAVY   98 (157)
Q Consensus        92 ~g-G~iv~   98 (157)
                      |. -++++
T Consensus        78 ~~~~ii~l   85 (215)
T 1a04_A           78 LSGRIVVF   85 (215)
T ss_dssp             CCSEEEEE
T ss_pred             CCCcEEEE
Confidence            33 34444

>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}

Probab=84.46  E-value=5.4  Score=24.70  Aligned_cols=67  Identities=12%  Similarity=0.058  Sum_probs=46.3

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL   89 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~   89 (157)
                      ..+|..+|-++......+..++ .+.  .+. ...+..+.+..+.     ...+|+|++|...+  ...++++.+.+.
T Consensus         4 ~~~ilivdd~~~~~~~l~~~l~-~~~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~   72 (133)
T 3nhm_A            4 KPKVLIVENSWTMRETLRLLLS-GEF--DCT-TAADGASGLQQAL-----AHPPDVLISDVNMDGMDGYALCGHFRSE   72 (133)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHT-TTS--EEE-EESSHHHHHHHHH-----HSCCSEEEECSSCSSSCHHHHHHHHHHS
T ss_pred             CCEEEEEcCCHHHHHHHHHHHh-CCc--EEE-EECCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence            4689999999999999988876 443  343 5567777776654     35799999997533  234556665543

>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...

Probab=84.37  E-value=5.3  Score=24.54  Aligned_cols=69  Identities=16%  Similarity=0.250  Sum_probs=48.0

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      +..+|..+|-++...+..+..++..|.. .+ ....+..+.+..+.     ..++|+|++|...+.  -.+.++.+.+
T Consensus         3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~-~v-~~~~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~g~~l~~~l~~   73 (128)
T 1jbe_A            3 KELKFLVVDDFSTMRRIVRNLLKELGFN-NV-EEAEDGVDALNKLQ-----AGGYGFVISDWNMPNMDGLELLKTIRA   73 (128)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHHHHTTCC-CE-EEESSHHHHHHHHT-----TCCCCEEEEESCCSSSCHHHHHHHHHC
T ss_pred             CccEEEEECCCHHHHHHHHHHHHHcCCc-EE-EeeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            3457999999999999999999887753 23 34567777776553     457999999975432  2344555543

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=84.22  E-value=0.55  Score=36.15  Aligned_cols=64  Identities=14%  Similarity=0.068  Sum_probs=38.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |+.+..+|+.. +++|++++.+++..+.+++    .|.+.-+.....|..+.+.++..    ...+|+||-..
T Consensus       185 G~~a~q~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~v~~~t~----~~g~d~v~d~~  248 (379)
T 3iup_A          185 GQMLNQICLKD-GIKLVNIVRKQEQADLLKA----QGAVHVCNAASPTFMQDLTEALV----STGATIAFDAT  248 (379)
T ss_dssp             HHHHHHHHHHH-TCCEEEEESSHHHHHHHHH----TTCSCEEETTSTTHHHHHHHHHH----HHCCCEEEESC
T ss_pred             HHHHHHHHHHC-CCEEEEEECCHHHHHHHHh----CCCcEEEeCCChHHHHHHHHHhc----CCCceEEEECC
Confidence            44455566554 6799999999999887764    56543333333455555544321    23699988443

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=83.99  E-value=3.4  Score=31.57  Aligned_cols=84  Identities=12%  Similarity=0.103  Sum_probs=49.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--c
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--Y   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~   79 (157)
                      |..++..++.. +.+|+.+|.+++..+.+++....     .+..+..+..+....+       ..+|+|+.....+.  .
T Consensus       179 G~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~DvVI~~~~~~~~~~  245 (361)
T 1pjc_A          179 GTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV-------AEADLLIGAVLVPGRRA  245 (361)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH-------HTCSEEEECCCCTTSSC
T ss_pred             HHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHH-------cCCCEEEECCCcCCCCC
Confidence            34444555554 55999999999988888765422     2333433433332322       25899976543221  0


Q ss_pred             HH-HHHHHHhcccCCeEEEE
Q 031568           80 CN-YHERLMKLLKVGGIAVY   98 (157)
Q Consensus        80 ~~-~~~~~~~~L~~gG~iv~   98 (157)
                      +. +.+...+.+++||+++-
T Consensus       246 ~~li~~~~~~~~~~g~~ivd  265 (361)
T 1pjc_A          246 PILVPASLVEQMRTGSVIVD  265 (361)
T ss_dssp             CCCBCHHHHTTSCTTCEEEE
T ss_pred             CeecCHHHHhhCCCCCEEEE
Confidence            11 13456678999998765

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=83.09  E-value=11  Score=27.07  Aligned_cols=58  Identities=9%  Similarity=0.062  Sum_probs=41.4

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHhhcCCCCCceeEEEEcC
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      .+++|+.++.+++..+.+.+.+++.+- .++.++.+|..+.      +.+..+   ..+..|.++.++
T Consensus        31 ~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~---~~G~iD~lvnnA   94 (256)
T 4fs3_A           31 LGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIGK---DVGNIDGVYHSI   94 (256)
T ss_dssp             TTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHHH---HHCCCSEEEECC
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHHH---HhCCCCEEEecc
Confidence            489999999999999888888877654 3678888886432      222221   136799998765

>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A

Probab=82.99  E-value=9.7  Score=26.55  Aligned_cols=75  Identities=13%  Similarity=0.057  Sum_probs=49.9

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~   92 (157)
                      .+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+.  -.+.++.+.+.- .
T Consensus         6 ~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~~~dlvilD~~l~~~~g~~~~~~lr~~~-~   76 (238)
T 2gwr_A            6 QRILVVDDDASLAEMLTIVLRGEGF--DTA-VIGDGTQALTAVR-----ELRPDLVLLDLMLPGMNGIDVCRVLRADS-G   76 (238)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EECCGGGHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHTTC-C
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHhCC-C
Confidence            5899999999999999999988765  343 4566666665553     346999999975432  344555554432 2


Q ss_pred             CeEEEE
Q 031568           93 GGIAVY   98 (157)
Q Consensus        93 gG~iv~   98 (157)
                      --+|++
T Consensus        77 ~~ii~l   82 (238)
T 2gwr_A           77 VPIVML   82 (238)
T ss_dssp             CCEEEE
T ss_pred             CcEEEE
Confidence            334444

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=82.73  E-value=3.3  Score=39.86  Aligned_cols=88  Identities=6%  Similarity=-0.128  Sum_probs=54.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+|+. -+++|++++.+++..+.+++.+...|...-+.....+..+.+....    ....+|+||--..    .+
T Consensus      1681 G~aAiqlAk~-~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t----~g~GvDvVld~~g----~~ 1751 (2512)
T 2vz8_A         1681 GQAAIAIALS-RGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHT----AGKGVDLVLNSLA----EE 1751 (2512)
T ss_dssp             HHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTT----TSCCEEEEEECCC----HH
T ss_pred             HHHHHHHHHH-cCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhc----CCCCceEEEECCC----ch
Confidence            4444555655 4789999999998888777654334443212212223333333221    1246999985322    56


Q ss_pred             HHHHHHhcccCCeEEEE
Q 031568           82 YHERLMKLLKVGGIAVY   98 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~   98 (157)
                      .++.+.+.|+++|.++.
T Consensus      1752 ~l~~~l~~L~~~Gr~V~ 1768 (2512)
T 2vz8_A         1752 KLQASVRCLAQHGRFLE 1768 (2512)
T ss_dssp             HHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHhcCCCcEEEE
Confidence            78889999999999886

>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A

Probab=82.69  E-value=6.2  Score=24.10  Aligned_cols=66  Identities=14%  Similarity=0.076  Sum_probs=45.6

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK   88 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~   88 (157)
                      .+|..+|-++...+..+..++..|.  .+. ...+..+.+..+.     ...+|+|++|...+  .-.+.++.+.+
T Consensus         3 ~~ilivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~   70 (127)
T 2jba_A            3 RRILVVEDEAPIREMVCFVLEQNGF--QPV-EAEDYDSAVNQLN-----EPWPDLILLAWMLPGGSGIQFIKHLRR   70 (127)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EECSHHHHHTTCS-----SSCCSEEEEESEETTEEHHHHHHHHHT
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHCCc--eEE-EeCCHHHHHHHHh-----ccCCCEEEEecCCCCCCHHHHHHHHHh
Confidence            4789999999999999999988765  343 4566666665442     45799999996432  22445555544

>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0

Probab=82.37  E-value=7  Score=24.48  Aligned_cols=66  Identities=15%  Similarity=0.045  Sum_probs=44.0

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      ..+|..+|-++......++.++..   ..+. ...+..+.+..+.     ...+|+|++|...+.  -.++++.+.+
T Consensus         3 ~~~iLivdd~~~~~~~l~~~l~~~---~~v~-~~~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~   70 (140)
T 3n53_A            3 LKKILIIDQQDFSRIELKNFLDSE---YLVI-ESKNEKEALEQID-----HHHPDLVILDMDIIGENSPNLCLKLKR   70 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTT---SEEE-EESSHHHHHHHHH-----HHCCSEEEEETTC------CHHHHHHT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhc---ceEE-EeCCHHHHHHHHh-----cCCCCEEEEeCCCCCCcHHHHHHHHHc
Confidence            458999999999999999888665   2343 4567777776554     357999999975432  2334445443

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=82.34  E-value=3.4  Score=31.00  Aligned_cols=77  Identities=9%  Similarity=0.072  Sum_probs=48.2

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHH----cCCCC--cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKK----AGVDH--KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL   86 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~----~~~~~--~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~   86 (157)
                      .+.+|+.+|.+++.++..++....    .+...  ++.....|..+.+          ..+|+|++-.......+.++.+
T Consensus        26 ~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~D~vi~~v~~~~~~~~~~~l   95 (359)
T 1bg6_A           26 KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----------KDADVILIVVPAIHHASIAANI   95 (359)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----------TTCSEEEECSCGGGHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH----------hcCCEEEEeCCchHHHHHHHHH
Confidence            357899999999887766553200    00110  1101234443322          3589999987665667788888


Q ss_pred             HhcccCCeEEEEe
Q 031568           87 MKLLKVGGIAVYD   99 (157)
Q Consensus        87 ~~~L~~gG~iv~~   99 (157)
                      .+.++++.+++..
T Consensus        96 ~~~l~~~~~vv~~  108 (359)
T 1bg6_A           96 ASYISEGQLIILN  108 (359)
T ss_dssp             GGGCCTTCEEEES
T ss_pred             HHhCCCCCEEEEc
Confidence            8889998877764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=82.09  E-value=2.7  Score=30.71  Aligned_cols=68  Identities=15%  Similarity=0.135  Sum_probs=40.7

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhc-cc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL-LK   91 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~-L~   91 (157)
                      ++.+|+.+|.+++.++.+++    .|...   ....|..+.+          ...|+||+-.+.....+.++.+.+. ++
T Consensus        30 ~~~~V~~~d~~~~~~~~~~~----~g~~~---~~~~~~~~~~----------~~aDvVilavp~~~~~~v~~~l~~~~l~   92 (290)
T 3b1f_A           30 PHYKIVGYNRSDRSRDIALE----RGIVD---EATADFKVFA----------ALADVIILAVPIKKTIDFIKILADLDLK   92 (290)
T ss_dssp             TTSEEEEECSSHHHHHHHHH----TTSCS---EEESCTTTTG----------GGCSEEEECSCHHHHHHHHHHHHTSCCC
T ss_pred             CCcEEEEEcCCHHHHHHHHH----cCCcc---cccCCHHHhh----------cCCCEEEEcCCHHHHHHHHHHHHhcCCC
Confidence            36789999999988776543    34321   1122322211          2478888876544455666666666 77


Q ss_pred             CCeEEE
Q 031568           92 VGGIAV   97 (157)
Q Consensus        92 ~gG~iv   97 (157)
                      ++.+++
T Consensus        93 ~~~ivi   98 (290)
T 3b1f_A           93 EDVIIT   98 (290)
T ss_dssp             TTCEEE
T ss_pred             CCCEEE
Confidence            766555

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=82.02  E-value=6  Score=29.50  Aligned_cols=75  Identities=15%  Similarity=0.255  Sum_probs=48.4

Q ss_pred             EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH-HhhcCCCCCceeEEEEcCCCc-----------------c
Q 031568           17 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGSFDYAFVDADKD-----------------N   78 (157)
Q Consensus        17 v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~-~~~~~~~~~~fD~I~iD~~~~-----------------~   78 (157)
                      |.++|+++.+++..+.|..      ...++.+|+.++... +.+    .+.+|+++..+++.                 .
T Consensus        43 v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~----~~~~Dll~ggpPCQ~fS~ag~~r~g~~d~r~~  112 (295)
T 2qrv_A           43 YIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQE----WGPFDLVIGGSPCNDLSIVNPARKGLYEGTGR  112 (295)
T ss_dssp             EEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHH----TCCCSEEEECCCCGGGBTTCTTCCTTTSTTTT
T ss_pred             EEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcc----cCCcCEEEecCCCccccccCccccccccccch
Confidence            6999999999988888752      335788998876432 211    24699999764211                 0


Q ss_pred             -cHHHHHHHHhcccCCe------EEEEeccc
Q 031568           79 -YCNYHERLMKLLKVGG------IAVYDNTL  102 (157)
Q Consensus        79 -~~~~~~~~~~~L~~gG------~iv~~~~~  102 (157)
                       +.+++ .+.+.++|..      +++++|+.
T Consensus       113 L~~~~~-rii~~~~P~~~~~~P~~~l~ENV~  142 (295)
T 2qrv_A          113 LFFEFY-RLLHDARPKEGDDRPFFWLFENVV  142 (295)
T ss_dssp             HHHHHH-HHHHHHSCCTTCCCCCEEEEEEES
T ss_pred             hHHHHH-HHHHHhCcccccCCccEEEEEcCc
Confidence             12222 3345667762      88899984

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=81.92  E-value=4.2  Score=31.82  Aligned_cols=73  Identities=10%  Similarity=0.028  Sum_probs=48.5

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL   90 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L   90 (157)
                      .+..|+.||.|++.++.+++    .|    +.++.||+.+  .|...     .-...|+|++-.+....-...-...+.+
T Consensus        26 ~g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~a-----gi~~A~~viv~~~~~~~n~~i~~~ar~~   92 (413)
T 3l9w_A           26 SGVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESA-----GAAKAEVLINAIDDPQTNLQLTEMVKEH   92 (413)
T ss_dssp             TTCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHT-----TTTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhc-----CCCccCEEEECCCChHHHHHHHHHHHHh
Confidence            47889999999999887764    33    4578999865  34433     1357999998765432222333445677


Q ss_pred             cCCeEEEE
Q 031568           91 KVGGIAVY   98 (157)
Q Consensus        91 ~~gG~iv~   98 (157)
                      .|+..+++
T Consensus        93 ~p~~~Iia  100 (413)
T 3l9w_A           93 FPHLQIIA  100 (413)
T ss_dssp             CTTCEEEE
T ss_pred             CCCCeEEE
Confidence            78877765

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=81.89  E-value=3  Score=32.11  Aligned_cols=86  Identities=14%  Similarity=0.039  Sum_probs=48.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--c
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--Y   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~   79 (157)
                      |..++..++.. +.+|+++|.+++..+.+++.+   |.  .+.....+..+. .+..      ...|+|+.....+.  .
T Consensus       180 G~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l-~~~l------~~aDvVi~~~~~p~~~t  246 (377)
T 2vhw_A          180 GYNAARIANGM-GATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYEL-EGAV------KRADLVIGAVLVPGAKA  246 (377)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHH-HHHH------HHCSEEEECCCCTTSCC
T ss_pred             HHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHH-HHHH------cCCCEEEECCCcCCCCC
Confidence            44455555554 569999999998877765532   33  222222233222 2221      25899987542221  1


Q ss_pred             HH-HHHHHHhcccCCeEEEEec
Q 031568           80 CN-YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        80 ~~-~~~~~~~~L~~gG~iv~~~  100 (157)
                      +. +.+...+.+++||+|+--.
T Consensus       247 ~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          247 PKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CCCBCHHHHTTSCTTCEEEEGG
T ss_pred             cceecHHHHhcCCCCcEEEEEe
Confidence            11 1355678899999887533

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=81.77  E-value=0.92  Score=34.32  Aligned_cols=38  Identities=13%  Similarity=0.080  Sum_probs=28.9

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCCh---hHHHHHHHHHHHcC
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNR---ETYEIGLPIIKKAG   38 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~---~~~~~a~~~~~~~~   38 (157)
                      +|-.|...++..-+.+.+++|+++   +.++.+++.+++.+
T Consensus       251 ~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          251 AGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            466777777755589999999999   99999999988766

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=81.73  E-value=5.1  Score=29.05  Aligned_cols=67  Identities=16%  Similarity=0.218  Sum_probs=41.9

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCC-ceeEEEEcCCCcccHHHHHHHHhcccCC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFDYAFVDADKDNYCNYHERLMKLLKVG   93 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~-~fD~I~iD~~~~~~~~~~~~~~~~L~~g   93 (157)
                      .+|+.+|.+++.++.++    +.|...  . ...|..+.          -. ..|+|++-.+.....+.++.+.+.++++
T Consensus        27 ~~V~~~d~~~~~~~~~~----~~g~~~--~-~~~~~~~~----------~~~~aDvVilavp~~~~~~v~~~l~~~l~~~   89 (281)
T 2g5c_A           27 GKIYGYDINPESISKAV----DLGIID--E-GTTSIAKV----------EDFSPDFVMLSSPVRTFREIAKKLSYILSED   89 (281)
T ss_dssp             SEEEEECSCHHHHHHHH----HTTSCS--E-EESCGGGG----------GGTCCSEEEECSCHHHHHHHHHHHHHHSCTT
T ss_pred             cEEEEEeCCHHHHHHHH----HCCCcc--c-ccCCHHHH----------hcCCCCEEEEcCCHHHHHHHHHHHHhhCCCC
Confidence            38999999998877654    345421  1 12333222          13 5899998766555556667777778887


Q ss_pred             eEEEE
Q 031568           94 GIAVY   98 (157)
Q Consensus        94 G~iv~   98 (157)
                      .+++.
T Consensus        90 ~iv~~   94 (281)
T 2g5c_A           90 ATVTD   94 (281)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            76553

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=81.54  E-value=2.5  Score=32.05  Aligned_cols=50  Identities=14%  Similarity=-0.003  Sum_probs=34.3

Q ss_pred             cEE-EEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHH-HHhhcCCCCCceeEEEEcCCC
Q 031568           15 LQI-TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus        15 ~~v-~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~-~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      ..+ .++|+++.+++..+.|+...       ++.+|+.++.. .+.     ...+|+++..+++
T Consensus        35 ~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~i~-----~~~~Dil~ggpPC   86 (327)
T 3qv2_A           35 NATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQIE-----SLNCNTWFMSPPC   86 (327)
T ss_dssp             CEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHHHH-----HTCCCEEEECCCC
T ss_pred             eEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHHhc-----cCCCCEEEecCCc
Confidence            456 69999999999999988432       45677765432 221     2369999977653

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=81.53  E-value=1.7  Score=35.75  Aligned_cols=40  Identities=15%  Similarity=0.400  Sum_probs=27.3

Q ss_pred             CCceeEEEEcCCCc----ccHHHHH----------HHHhcccCCeEEEEecccC
Q 031568           64 EGSFDYAFVDADKD----NYCNYHE----------RLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        64 ~~~fD~I~iD~~~~----~~~~~~~----------~~~~~L~~gG~iv~~~~~~  103 (157)
                      .++||+||++...+    .|.+.-+          .++.+|+|||.+++..-.+
T Consensus       219 ~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGy  272 (670)
T 4gua_A          219 QARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGY  272 (670)
T ss_dssp             CCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             CCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeec
Confidence            46899999997432    3444322          3457999999999865443

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=81.46  E-value=8.6  Score=27.91  Aligned_cols=68  Identities=6%  Similarity=0.026  Sum_probs=46.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |..++...+. .+++|+.++.+++.++.+.+.++..|.  ++..+.+|..+.      +.+..+   ..++.|.++.++.
T Consensus        20 G~aiA~~la~-~Ga~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~---~~G~iDiLVNNAG   93 (254)
T 4fn4_A           20 GRAIAKKFAL-NDSIVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFE---TYSRIDVLCNNAG   93 (254)
T ss_dssp             HHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH---HHSCCCEEEECCC
T ss_pred             HHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH---HcCCCCEEEECCc
Confidence            3344443333 489999999999999988888887764  688888986542      222221   1367999998763

>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A

Probab=81.38  E-value=7.4  Score=24.06  Aligned_cols=69  Identities=7%  Similarity=0.123  Sum_probs=47.8

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      ..+|..+|-++...+..++.++..|.. .+ ....+..+.+..+..    ...+|+|++|...+.  -.++++.+.+
T Consensus         5 ~~~iLivdd~~~~~~~l~~~L~~~g~~-~v-~~~~~~~~a~~~~~~----~~~~dlvi~D~~~p~~~g~~~~~~lr~   75 (129)
T 3h1g_A            5 SMKLLVVDDSSTMRRIIKNTLSRLGYE-DV-LEAEHGVEAWEKLDA----NADTKVLITDWNMPEMNGLDLVKKVRS   75 (129)
T ss_dssp             -CCEEEECSCHHHHHHHHHHHHHTTCC-CE-EEESSHHHHHHHHHH----CTTCCEEEECSCCSSSCHHHHHHHHHT
T ss_pred             CcEEEEEeCCHHHHHHHHHHHHHcCCc-EE-EEeCCHHHHHHHHHh----CCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            457999999999999999999988764 23 345666666655531    346999999975443  2445555544

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=81.19  E-value=1.5  Score=32.89  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=25.5

Q ss_pred             CceeEEEEcCCCc----ccHH----------HHHHHHhcccCCeEEEEec
Q 031568           65 GSFDYAFVDADKD----NYCN----------YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        65 ~~fD~I~iD~~~~----~~~~----------~~~~~~~~L~~gG~iv~~~  100 (157)
                      ++||+||+|....    .|.+          ..+.+..+|+|||.+++.-
T Consensus       205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kv  254 (320)
T 2hwk_A          205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIG  254 (320)
T ss_dssp             CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEE
T ss_pred             CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            5799999997432    2231          2445568999999999974

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=81.17  E-value=9.4  Score=30.09  Aligned_cols=90  Identities=18%  Similarity=0.249  Sum_probs=49.1

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc-----CCCCCceeEEEEcCC
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-----SENEGSFDYAFVDAD   75 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~-----~~~~~~fD~I~iD~~   75 (157)
                      ||+.++..++.. +-+|+++|++++.++..++.     .. .+  ..-...+.+.+..+.     ......-|+||+.-+
T Consensus        22 vGlp~A~~La~~-G~~V~~~D~~~~kv~~L~~g-----~~-pi--~epgl~~ll~~~~~~g~l~~ttd~~~aDvvii~Vp   92 (431)
T 3ojo_A           22 IGLPTSIMFAKH-GVDVLGVDINQQTIDKLQNG-----QI-SI--EEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVP   92 (431)
T ss_dssp             THHHHHHHHHHT-TCEEEEECSCHHHHHHHHTT-----CC-SS--CCTTHHHHHHHHHHTTCEEEESSCCCCSEEEECCC
T ss_pred             HHHHHHHHHHHC-CCEEEEEECCHHHHHHHHCC-----CC-Cc--CCCCHHHHHHhhcccCceEEeCchhhCCEEEEEeC
Confidence            677777666553 78999999999998877541     11 11  222222222211000     000124788887532


Q ss_pred             Ccc------------cHHHHHHHHhcccCCeEEEEe
Q 031568           76 KDN------------YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        76 ~~~------------~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      .+.            .....+.+.+.|++|.++|..
T Consensus        93 Tp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~  128 (431)
T 3ojo_A           93 TPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVE  128 (431)
T ss_dssp             CCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEEC
T ss_pred             CCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEe
Confidence            211            233345667789998877754

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=81.13  E-value=14  Score=27.11  Aligned_cols=89  Identities=15%  Similarity=0.228  Sum_probs=52.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |..++...+. .+++|+.++.+++.++.+.+   +.+  .++..+.+|..+.      +.+..+   ..++.|.++.++.
T Consensus        42 G~aiA~~la~-~Ga~V~i~~r~~~~l~~~~~---~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~---~~G~iDiLVNNAG  112 (273)
T 4fgs_A           42 GLAAAKRFVA-EGARVFITGRRKDVLDAAIA---EIG--GGAVGIQADSANLAELDRLYEKVKA---EAGRIDVLFVNAG  112 (273)
T ss_dssp             HHHHHHHHHH-TTCEEEEEESCHHHHHHHHH---HHC--TTCEEEECCTTCHHHHHHHHHHHHH---HHSCEEEEEECCC
T ss_pred             HHHHHHHHHH-CCCEEEEEECCHHHHHHHHH---HcC--CCeEEEEecCCCHHHHHHHHHHHHH---HcCCCCEEEECCC
Confidence            3344443333 58999999999988776544   334  3567788886432      222221   1367999998763


Q ss_pred             Cc-----------ccH-----------HHHHHHHhcccCCeEEEEe
Q 031568           76 KD-----------NYC-----------NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        76 ~~-----------~~~-----------~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..           .+.           ...+.+.++++.+|.||.-
T Consensus       113 ~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni  158 (273)
T 4fgs_A          113 GGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT  158 (273)
T ss_dssp             CCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             CCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence            21           111           1234455788888887753

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=80.83  E-value=10  Score=28.93  Aligned_cols=65  Identities=11%  Similarity=0.058  Sum_probs=46.4

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK   88 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~   88 (157)
                      +|..||-++......+..++..|..  + ....+..+.+..+.     ...||+|++|-..+  .-.++++.+.+
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~g~~--v-~~a~~~~eal~~l~-----~~~~DlvllDi~mP~~dG~ell~~lr~   68 (368)
T 3dzd_A            2 RVLVVDDEESITSSLSAILEEEGYH--P-DTAKTLREAEKKIK-----ELFFPVIVLDVWMPDGDGVNFIDFIKE   68 (368)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--E-EEESSHHHHHHHHH-----HBCCSEEEEESEETTEETTTHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCE--E-EEECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence            6889999999999999999988763  4 45677777776654     45799999996432  12334555443

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=80.83  E-value=0.41  Score=35.70  Aligned_cols=74  Identities=12%  Similarity=0.126  Sum_probs=45.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+|+.. +++|++++ +++..+.+++    .|.+   .++. | .   .++      .+.+|+||-....    .
T Consensus       155 G~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~~-d-~---~~v------~~g~Dvv~d~~g~----~  210 (315)
T 3goh_A          155 NNLLTQMLNNA-GYVVDLVS-ASLSQALAAK----RGVR---HLYR-E-P---SQV------TQKYFAIFDAVNS----Q  210 (315)
T ss_dssp             HHHHHHHHHHH-TCEEEEEC-SSCCHHHHHH----HTEE---EEES-S-G---GGC------CSCEEEEECC--------
T ss_pred             HHHHHHHHHHc-CCEEEEEE-ChhhHHHHHH----cCCC---EEEc-C-H---HHh------CCCccEEEECCCc----h
Confidence            55555666654 66999999 9998888765    4542   2222 4 1   222      3579998843322    1


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .+..+.+.|+++|.++.-
T Consensus       211 ~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          211 NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             ---TTGGGEEEEEEEEEE
T ss_pred             hHHHHHHHhcCCCEEEEE
Confidence            235678999999999874

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=80.49  E-value=6.8  Score=28.68  Aligned_cols=74  Identities=12%  Similarity=0.087  Sum_probs=46.9

Q ss_pred             EEEEEeCC--hhHHHHHHHHHHHcCCCCcEEEEEccHH-HHHHHHhhcCCCCCceeEEEEcC-CC-cccHHHHHHHHhcc
Q 031568           16 QITAIDVN--RETYEIGLPIIKKAGVDHKINFIESEAL-SVLDQLLKYSENEGSFDYAFVDA-DK-DNYCNYHERLMKLL   90 (157)
Q Consensus        16 ~v~~ve~~--~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~l~~~~~~~~~~~~fD~I~iD~-~~-~~~~~~~~~~~~~L   90 (157)
                      +|..|+-+  +.......+.++..|.  .|+++..+.. .....+       .+||+|+++. .. .-....++.+.+.+
T Consensus         6 ~vLiV~g~~~~~~a~~l~~aL~~~g~--~V~~i~~~~~~~~~~~L-------~~yDvIIl~d~~~~~l~~~~~~~L~~yV   76 (259)
T 3rht_A            6 RVLYCGDTSLETAAGYLAGLMTSWQW--EFDYIPSHVGLDVGELL-------AKQDLVILSDYPAERMTAQAIDQLVTMV   76 (259)
T ss_dssp             CEEEEESSCTTTTHHHHHHHHHHTTC--CCEEECTTSCBCSSHHH-------HTCSEEEEESCCGGGBCHHHHHHHHHHH
T ss_pred             eEEEECCCCchhHHHHHHHHHHhCCc--eEEEecccccccChhHH-------hcCCEEEEcCCccccCCHHHHHHHHHHH
Confidence            56666765  6677778888888887  3676654422 111222       3699998863 22 12356677777888


Q ss_pred             cCCeEEEE
Q 031568           91 KVGGIAVY   98 (157)
Q Consensus        91 ~~gG~iv~   98 (157)
                      +.||-+++
T Consensus        77 ~~GGgLi~   84 (259)
T 3rht_A           77 KAGCGLVM   84 (259)
T ss_dssp             HTTCEEEE
T ss_pred             HhCCeEEE
Confidence            88776665

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=80.25  E-value=5.9  Score=30.71  Aligned_cols=82  Identities=6%  Similarity=0.077  Sum_probs=48.0

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHH------------HHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPII------------KKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   68 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~------------~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD   68 (157)
                      ||.+.+..++.  +.+|+++|++++.++..++..            ...  ..++.+ ..|..+.+.          ..|
T Consensus        11 vG~~~A~~La~--G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~--~~~l~~-t~~~~~~~~----------~aD   75 (402)
T 1dlj_A           11 VGLSLGVLLSL--QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSK--QLSIKA-TLDSKAAYK----------EAE   75 (402)
T ss_dssp             HHHHHHHHHTT--TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS--CCCEEE-ESCHHHHHH----------HCS
T ss_pred             HHHHHHHHHhC--CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhc--cCcEEE-eCCHHHHhc----------CCC
Confidence            35555444443  679999999998877654311            000  112332 234433322          479


Q ss_pred             EEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEE
Q 031568           69 YAFVDADKD-----------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        69 ~I~iD~~~~-----------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      +||+-...+           ...+.++.+.+ +++|.+++.
T Consensus        76 vviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~  115 (402)
T 1dlj_A           76 LVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLII  115 (402)
T ss_dssp             EEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEE
T ss_pred             EEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEE
Confidence            999865433           24566677777 888888775

>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A

Probab=80.11  E-value=13  Score=28.33  Aligned_cols=68  Identities=13%  Similarity=0.081  Sum_probs=49.2

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL   89 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~   89 (157)
                      ..+|..||-++......++.++..|.  .+ ....+..+.+..+.     ..++|+|++|-..+.  -.+.++.+.+.
T Consensus         5 ~~~iLivdD~~~~~~~l~~~L~~~g~--~v-~~a~~~~~al~~~~-----~~~~dlvllD~~mp~~~G~~~~~~lr~~   74 (394)
T 3eq2_A            5 SATLLIIDDDEVVRESLAAYLEDSNF--KV-LQALNGLQGLQIFE-----SEQPDLVICDLRMPQIDGLELIRRIRQT   74 (394)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHTTE--EE-EECSSHHHHHHHHH-----HSCCSEEEECCCSSSSCTHHHHHHHHHT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHh-----hCCCCEEEEcCCCCCCCHHHHHHHHHhh
Confidence            46899999999999999999988765  34 34567777776654     457999999975332  34556665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	4e-35
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	4e-25
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	1e-12

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  119 bits (300), Expect = 4e-35
 Identities = 79/141 (56%), Positives = 108/141 (76%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           +I A+D+N+E YE+GLP+IKKAGVDHKI+F E  AL VLD+++K  +N GS+D+ FVDAD
Sbjct: 86  KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD 145

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           KDNY NYH+RL+ L+KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA 
Sbjct: 146 KDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAV 205

Query: 136 DPRVQLSHVALGDGITICRRI 156
           DPR+++  + +GDGITICRRI
Sbjct: 206 DPRIEICMLPVGDGITICRRI 226

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.7 bits (232), Expect = 4e-25
 Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 7/141 (4%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           ++   +V+ +  E+G P+ ++A  +HKI+     AL  LD+LL  +   G+FD A VDAD
Sbjct: 86  RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLA-AGEAGTFDVAVVDAD 144

Query: 76  KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135
           K+N   Y+ER ++LL+ GGI      LW G V  P +           + + +LN  +  
Sbjct: 145 KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAA------ECVRNLNERIRR 198

Query: 136 DPRVQLSHVALGDGITICRRI 156
           D RV +S + LGDG+T+  +I
Sbjct: 199 DVRVYISLLPLGDGLTLAFKI 219

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.6 bits (146), Expect = 1e-12
 Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 16/139 (11%)

Query: 16  QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75
           ++  +++N +   I   ++  AG+  K+  +   +  ++ QL K   +  + D  F+D  
Sbjct: 83  RLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQL-KKKYDVDTLDMVFLDHW 141

Query: 76  KDNYCNYHERL--MKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL 133
           KD Y      L    LL+ G + + DN +  GT                   +   +   
Sbjct: 142 KDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDF-------------LAYVRGSSSFE 188

Query: 134 ADDPRVQLSHVALGDGITI 152
                  L ++ + DG+  
Sbjct: 189 CTHYSSYLEYMKVVDGLEK 207

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	100.0
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	100.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.9
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.53
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.47
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.4
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.39
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.38
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.36
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.36
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.33
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.29
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.29
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.29
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.27
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.26
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.25
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.24
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.23
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.23
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.23
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.22
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.22
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.22
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.21
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.21
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.2
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.19
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.19
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.18
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.16
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.15
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.15
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.15
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.13
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.11
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.11
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.11
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.08
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.06
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.02
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.02
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.01
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.0
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.99
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.99
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.98
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.95
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.95
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.92
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.91
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.91
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.88
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.88
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.87
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.87
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.83
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.76
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.72
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.72
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.68
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.66
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.66
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.66
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.65
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.63
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.62
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.61
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.6
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.57
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.55
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.54
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.52
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.51
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.48
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.38
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.34
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.32
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.27
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.12
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.11
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.0
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.0
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	97.95
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.95
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.86
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.64
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.63
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.49
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.44
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.26
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.24
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.22
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.19
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.12
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.09
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.08
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.07
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.06
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.04
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.95
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.88
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.86
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.75
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.67
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.67
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.57
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.54
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.49
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	96.39
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	96.18
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.95
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	95.87
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.85
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	95.75
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	95.6
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	95.6
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	95.59
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.4
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	95.35
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.28
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	95.19
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	95.19
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.18
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.17
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.17
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	95.14
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.13
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.11
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	95.07
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.06
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	94.82
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.7
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	94.65
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	94.55
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.45
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	94.44
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.34
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	94.28
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	94.25
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	94.2
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.08
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	94.05
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	94.05
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	94.01
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	93.97
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	93.86
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	93.85
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	93.83
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	93.81
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	93.71
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	93.7
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	93.7
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	93.62
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	93.58
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	93.28
d1a2oa1	140	Methylesterase CheB, N-terminal domain {Salmonella	93.24
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	92.85
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.58
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	91.98
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	91.87
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	91.78
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	91.41
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	91.18
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	90.91
d1k66a_	149	Response regulator for cyanobacterial phytochrome	90.26
d1k68a_	140	Response regulator for cyanobacterial phytochrome	90.22
d1qo0d_	189	Positive regulator of the amidase operon AmiR {Pse	90.16
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	90.07
d1s8na_	190	Probable two-component system transcriptional regu	90.06
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	89.67
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	89.17
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.47
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	86.56
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	86.29
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	85.9
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	85.57
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	85.12
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	84.58
d1w25a2	153	Response regulator PleD, receiver domain {Caulobac	84.33
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	84.32
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.07
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	83.69
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	83.25
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	82.81
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	82.74
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	82.14
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	82.01
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	81.2

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=4.6e-35  Score=213.80  Aligned_cols=156  Identities=51%  Similarity=0.865  Sum_probs=136.1

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      +|+||+++|.+.| +++|+++|.+++.++.|+++++++|+.++|+++.|++.+.++++.......++||+||+|+++..|
T Consensus        70 ~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~y  149 (227)
T d1susa1          70 TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNY  149 (227)
T ss_dssp             GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCSTTH
T ss_pred             hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEEEeccchhhh
Confidence            4999999998775 899999999999999999999999999999999999999999874210113579999999999999


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      ..+++.+.++|+|||+|++||++|+|.+..|.+...+...+.+.+.+++|++.+.+||+++++++|+|||+.|++|+
T Consensus       150 ~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~llPigDGl~i~~K~  226 (227)
T d1susa1         150 LNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI  226 (227)
T ss_dssp             HHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCEEECSTTCEEEECBC
T ss_pred             HHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEEEeecCCeeEEEEEC
Confidence            99999999999999999999999999998886543222111255679999999999999999999999999999986

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=204.08  Aligned_cols=149  Identities=33%  Similarity=0.526  Sum_probs=134.5

Q ss_pred             CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      +|+||+++|.+.| +++|+++|.+++.++.|+++++++|+.++++++.||+.+.++.+... ...++||+||+|+++..|
T Consensus        70 ~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~-~~~~~fD~ifiD~dk~~y  148 (219)
T d2avda1          70 TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA-GEAGTFDVAVVDADKENC  148 (219)
T ss_dssp             TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT-TCTTCEEEEEECSCSTTH
T ss_pred             hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhh-cccCCccEEEEeCCHHHH
Confidence            5999999999775 89999999999999999999999999999999999999998876432 124689999999999999


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  156 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~  156 (157)
                      ..+++.+.++|+|||+|++||++|+|.+..|...      +.....+++|++.+.+||++.++++|+|||+.|++|+
T Consensus       149 ~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~------d~~~~~ir~~~~~i~~d~r~~~~llPigdGl~ia~Kl  219 (219)
T d2avda1         149 SAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKG------DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI  219 (219)
T ss_dssp             HHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTT------CHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHHHHHhcCCcEEEEeCCcccCcccCcccC------CHHHHHHHHHHHHHHhCCCEEEEEeecCCeeEEEEeC
Confidence            9999999999999999999999999999887521      1267789999999999999999999999999999985

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3.6e-23  Score=149.33  Aligned_cols=135  Identities=19%  Similarity=0.233  Sum_probs=111.9

Q ss_pred             CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|+||++++.+. ++++|+++|+++++++.|++++++.|+.++|+++.||+.+.++.+.+. ...++||+||+|+++..|
T Consensus        67 ~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~-~~~~~~D~ifiD~~~~~~  145 (214)
T d2cl5a1          67 CGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK-YDVDTLDMVFLDHWKDRY  145 (214)
T ss_dssp             TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHH-SCCCCEEEEEECSCGGGH
T ss_pred             chhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhc-ccccccceeeeccccccc
Confidence            489999999876 579999999999999999999999999999999999999998876431 123579999999998877


Q ss_pred             HHH--HHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEe-------eecCCee
Q 031568           80 CNY--HERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH-------VALGDGI  150 (157)
Q Consensus        80 ~~~--~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~p~~~G~  150 (157)
                      ...  +..+.++|+|||+|++||++|.|.                    .++++++++++++.+..       +|++||+
T Consensus       146 ~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~--------------------~~~~~~vr~~~~~~~~~~~~~~~~~~~~dgl  205 (214)
T d2cl5a1         146 LPDTLLLEKCGLLRKGTVLLADNVIVPGT--------------------PDFLAYVRGSSSFECTHYSSYLEYMKVVDGL  205 (214)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEESCCCCCCC--------------------HHHHHHHHHCTTEEEEEEEEECTTSSSEEEE
T ss_pred             ccHHHHHHHhCccCCCcEEEEeCcCCCCC--------------------hHHHHHHhccCceeehhhhhcceecccCCce
Confidence            664  555678999999999999998652                    34566677788877664       7789999


Q ss_pred             EEEEEe
Q 031568          151 TICRRI  156 (157)
Q Consensus       151 ~v~~~~  156 (157)
                      .+++.+
T Consensus       206 ~~s~~~  211 (214)
T d2cl5a1         206 EKAIYQ  211 (214)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            998753

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.53  E-value=6e-14  Score=98.19  Aligned_cols=91  Identities=19%  Similarity=0.200  Sum_probs=78.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..|..++.  ...+|+++|+++++++.|++|++++|+.++++++++|+.+.+..       .+.||.||++.......+
T Consensus        45 G~~s~~lA~--~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~-------~~~~D~v~~~~~~~~~~~  115 (186)
T d1l3ia_          45 GGVTLELAG--RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-------IPDIDIAVVGGSGGELQE  115 (186)
T ss_dssp             SHHHHHHHT--TSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-------SCCEEEEEESCCTTCHHH
T ss_pred             Ecccccccc--cceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccc-------cCCcCEEEEeCccccchH
Confidence            545555543  46799999999999999999999999988999999999887642       468999999988778889


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 031568           82 YHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +++.+.+.|+|||.+++...
T Consensus       116 ~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_         116 ILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             HHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHhCcCCEEEEEee
Confidence            99999999999999988644

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.47  E-value=4.9e-13  Score=101.11  Aligned_cols=97  Identities=23%  Similarity=0.219  Sum_probs=78.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |.-++.++ .....+|+++|+++.+++.|++|++.+|+.++++++++|+.+++..+..   ..++||+|++|++..    
T Consensus       157 G~~si~~a-~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~---~~~~fD~Vi~DpP~~~~~~  232 (324)
T d2as0a2         157 GGFAIHAA-IAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK---KGEKFDIVVLDPPAFVQHE  232 (324)
T ss_dssp             THHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH---TTCCEEEEEECCCCSCSSG
T ss_pred             cchhhhhh-hcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHh---ccCCCCchhcCCccccCCH
Confidence            33333333 3345699999999999999999999999988999999999998876643   256899999998632    


Q ss_pred             --------ccHHHHHHHHhcccCCeEEEEeccc
Q 031568           78 --------NYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        78 --------~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                              .|.+++..+.++|+|||+|++-.+.
T Consensus       233 ~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         233 KDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             GGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence                    3667888899999999999986543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.40  E-value=1.6e-12  Score=98.01  Aligned_cols=85  Identities=25%  Similarity=0.368  Sum_probs=72.1

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------------ccH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------NYC   80 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------------~~~   80 (157)
                      .+.+|+++|+++.+++.|++|++.+|++ +++++++|+.++++.+..   ..++||+|++|++..            .|.
T Consensus       166 g~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~---~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~  241 (318)
T d1wxxa2         166 GFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEK---EGERFDLVVLDPPAFAKGKKDVERAYRAYK  241 (318)
T ss_dssp             HEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHH---TTCCEEEEEECCCCSCCSTTSHHHHHHHHH
T ss_pred             cCCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHh---hhcCCCEEEEcCCccccchHHHHHHHHHHH
Confidence            4779999999999999999999999995 799999999998876643   256899999998531            245


Q ss_pred             HHHHHHHhcccCCeEEEEecc
Q 031568           81 NYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +++..+.++|+|||+|++..+
T Consensus       242 ~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         242 EVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             HHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHcCCCCEEEEEeC
Confidence            677888899999999998655

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.39  E-value=8.3e-12  Score=93.96  Aligned_cols=88  Identities=10%  Similarity=0.268  Sum_probs=74.3

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC------------c
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK------------D   77 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~------------~   77 (157)
                      .....+|++||+++.+++.|++|++.++++ .+++++.+|+.++++.+.+   ..++||+|++|++.            +
T Consensus       164 ~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~---~~~~fD~Ii~DPP~f~~~~~~~~~~~~  240 (317)
T d2b78a2         164 MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR---HHLTYDIIIIDPPSFARNKKEVFSVSK  240 (317)
T ss_dssp             HTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH---TTCCEEEEEECCCCC-----CCCCHHH
T ss_pred             hCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHh---hcCCCCEEEEcChhhccchhHHHHHHH
Confidence            445668999999999999999999999985 5799999999999987653   25689999999863            1


Q ss_pred             ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .|.++++.+.++|+|||+|++..+
T Consensus       241 ~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         241 DYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEeC
Confidence            366788889999999999998654

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.38  E-value=1.6e-12  Score=88.03  Aligned_cols=84  Identities=21%  Similarity=0.287  Sum_probs=69.7

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHH-
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM-   87 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~-   87 (157)
                      .+...+|+++|.++++++.+++|++.+++.++++++++|+.++++..      .++||+||+||+..  .+...++.+. 
T Consensus        34 ~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~------~~~fDiIf~DPPy~~~~~~~~l~~i~~  107 (152)
T d2esra1          34 SRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL------TGRFDLVFLDPPYAKETIVATIEALAA  107 (152)
T ss_dssp             HTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB------CSCEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred             HhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc------ccccceeEechhhccchHHHHHHHHHH
Confidence            44456999999999999999999999999889999999999988753      57899999998632  3445566554 


Q ss_pred             -hcccCCeEEEEec
Q 031568           88 -KLLKVGGIAVYDN  100 (157)
Q Consensus        88 -~~L~~gG~iv~~~  100 (157)
                       ++|+|+|+++++.
T Consensus       108 ~~~L~~~g~iiiE~  121 (152)
T d2esra1         108 KNLLSEQVMVVCET  121 (152)
T ss_dssp             TTCEEEEEEEEEEE
T ss_pred             CCCcCCCeEEEEEe
Confidence             5799999999864

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=8.7e-13  Score=95.62  Aligned_cols=95  Identities=19%  Similarity=0.235  Sum_probs=77.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..|..+++.. +.+|++||+++.+++.|+++.+..|++++++++.+|+.+..+        +++||+|++-..   ..+
T Consensus        45 G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~--------~~~fD~v~~~~~~~~~~d  115 (245)
T d1nkva_          45 GEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA--------NEKCDVAACVGATWIAGG  115 (245)
T ss_dssp             CHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC--------SSCEEEEEEESCGGGTSS
T ss_pred             CHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccc--------cCceeEEEEEehhhccCC
Confidence            54555565554 689999999999999999999999999899999999987532        678999997532   335


Q ss_pred             cHHHHHHHHhcccCCeEEEEecccCCc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTLWGG  105 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~~~~  105 (157)
                      ...+++.+.+.|+|||.+++.+..+..
T Consensus       116 ~~~~l~~~~r~LkPGG~l~i~~~~~~~  142 (245)
T d1nkva_         116 FAGAEELLAQSLKPGGIMLIGEPYWRQ  142 (245)
T ss_dssp             SHHHHHHHTTSEEEEEEEEEEEEEETT
T ss_pred             HHHHHHHHHHHcCcCcEEEEEeccccC
Confidence            688999999999999999997765543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.36  E-value=6.7e-12  Score=87.45  Aligned_cols=89  Identities=16%  Similarity=0.208  Sum_probs=73.7

Q ss_pred             HhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC--cccHHHHHHH
Q 031568            9 MTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERL   86 (157)
Q Consensus         9 ~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--~~~~~~~~~~   86 (157)
                      |+.+...+|++||.++++++.+++|++..+..++++++++|+.++++.+..   ...+||+||+||+.  ..+...++.+
T Consensus        59 a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~---~~~~fDlIflDPPY~~~~~~~~l~~i  135 (182)
T d2fhpa1          59 AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---EKLQFDLVLLDPPYAKQEIVSQLEKM  135 (182)
T ss_dssp             HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH---TTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred             eeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc---cCCCcceEEechhhhhhHHHHHHHHH
Confidence            334456689999999999999999999999888999999999999887642   24689999999963  3567778877


Q ss_pred             H--hcccCCeEEEEec
Q 031568           87 M--KLLKVGGIAVYDN  100 (157)
Q Consensus        87 ~--~~L~~gG~iv~~~  100 (157)
                      .  .+|+++|+|+++.
T Consensus       136 ~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         136 LERQLLTNEAVIVCET  151 (182)
T ss_dssp             HHTTCEEEEEEEEEEE
T ss_pred             HHCCCCCCCEEEEEEc
Confidence            5  4799999999864

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.33  E-value=8.4e-13  Score=96.37  Aligned_cols=87  Identities=10%  Similarity=0.170  Sum_probs=73.8

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |.-|.+||.. .|+++|+++|+++++++.|++|+++.+...+++++++|+.+.++        +++||.||+|...  ..
T Consensus        97 G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~--------~~~fD~V~ld~p~--p~  166 (250)
T d1yb2a1          97 GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--------DQMYDAVIADIPD--PW  166 (250)
T ss_dssp             SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--------SCCEEEEEECCSC--GG
T ss_pred             cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc--------cceeeeeeecCCc--hH
Confidence            5556677764 58999999999999999999999998777799999999987542        5689999999753  45


Q ss_pred             HHHHHHHhcccCCeEEEE
Q 031568           81 NYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~   98 (157)
                      ++++.+.+.|+|||++++
T Consensus       167 ~~l~~~~~~LKpGG~lv~  184 (250)
T d1yb2a1         167 NHVQKIASMMKPGSVATF  184 (250)
T ss_dssp             GSHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCceEEE
Confidence            678999999999999987

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.29  E-value=2.8e-11  Score=90.51  Aligned_cols=86  Identities=13%  Similarity=0.168  Sum_probs=68.4

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------------c
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------------N   78 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------------~   78 (157)
                      .+++|++||.++.+++.|++|++.+|+.+ +++++++|+.+++......   .++||+|++|++.-             .
T Consensus       153 ~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~---~~~fD~IilDPP~f~~~~~~~~~~~~~~  229 (309)
T d2igta1         153 AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR---GSTYDIILTDPPKFGRGTHGEVWQLFDH  229 (309)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH---TCCBSEEEECCCSEEECTTCCEEEHHHH
T ss_pred             CCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhc---CCCCCEEEECCCcccccccchhHHHHHH
Confidence            46799999999999999999999999874 6999999999999866432   56899999998621             1


Q ss_pred             cHHHHHHHHhcccCCeEEEEecc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +..+++.+.++|+|||.+++-++
T Consensus       230 ~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         230 LPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             HHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCCEEEEec
Confidence            23455677789999987555443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.29  E-value=1.1e-11  Score=87.85  Aligned_cols=92  Identities=10%  Similarity=0.218  Sum_probs=77.8

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      +|-++..+|+.+|+..+++||+++.++..|.+++++.++. ++.++.+|+...+..+     +.+++|.|++..+.+.  
T Consensus        40 ~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~-----~~~~~d~v~i~fp~P~~k  113 (204)
T d2fcaa1          40 KGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEVKRVYLNFSDPWPK  113 (204)
T ss_dssp             TSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSCCEEEEESCCCCCS
T ss_pred             CcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhhhhccc-----Cchhhhccccccccccch
Confidence            4677888999999999999999999999999999999995 8999999999877554     3678999987542211  


Q ss_pred             ---------cHHHHHHHHhcccCCeEEEE
Q 031568           79 ---------YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 ---------~~~~~~~~~~~L~~gG~iv~   98 (157)
                               ..++++.+.+.|+|||.|.+
T Consensus       114 ~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i  142 (204)
T d2fcaa1         114 KRHEKRRLTYSHFLKKYEEVMGKGGSIHF  142 (204)
T ss_dssp             GGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred             hhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence                     25789999999999999876

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=1.4e-11  Score=92.53  Aligned_cols=85  Identities=15%  Similarity=0.265  Sum_probs=69.0

Q ss_pred             HhhCCCcEEEEEeCChhHHHHHHHHHHHc--C--CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------
Q 031568            9 MTGNKILQITAIDVNRETYEIGLPIIKKA--G--VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------   77 (157)
Q Consensus         9 ~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~--~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------   77 (157)
                      ++..+..+|++||++|+.++.|++++...  +  -++|++++.+|+.+++...      +++||+|++|...+       
T Consensus        96 l~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~------~~~yDvIi~D~~dp~~~~~~~  169 (312)
T d1uira_          96 LKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------EERYDVVIIDLTDPVGEDNPA  169 (312)
T ss_dssp             TTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------CCCEEEEEEECCCCBSTTCGG
T ss_pred             HhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc------CCcccEEEEeCCCcccccchh
Confidence            33446889999999999999999998542  2  2468999999999999863      56899999987321       


Q ss_pred             ---ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 ---NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 ---~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                         ...++++.+.+.|+|||+++..
T Consensus       170 ~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         170 RLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             GGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             hhhhhHHHHHHHHHhcCCCceEEEe
Confidence               1367899999999999999884

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.27  E-value=8.3e-11  Score=86.80  Aligned_cols=88  Identities=14%  Similarity=0.231  Sum_probs=69.9

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc---------CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKA---------GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~---------~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |+..+.+.+..+|++||+||+.++.|++++...         ..++|++++.+|+.+++++       .++||+|++|..
T Consensus        86 ~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-------~~~yDvIi~D~~  158 (276)
T d1mjfa_          86 TVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-------NRGFDVIIADST  158 (276)
T ss_dssp             HHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-------CCCEEEEEEECC
T ss_pred             HHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-------cCCCCEEEEeCC
Confidence            333334567789999999999999999977432         2357999999999999864       568999999974


Q ss_pred             Ccc-------cHHHHHHHHhcccCCeEEEEe
Q 031568           76 KDN-------YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        76 ~~~-------~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      .+.       ..++++.+.+.|+|||+++..
T Consensus       159 ~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         159 DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             CCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            321       357899999999999999875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=9.1e-12  Score=91.02  Aligned_cols=80  Identities=20%  Similarity=0.206  Sum_probs=67.5

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV   92 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~   92 (157)
                      .+.+|+++|+|+.+++.|++|++.++++  ++++++|+.+.++        .++||+|+.+.......++++.+.+.|+|
T Consensus       141 ~g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~~~--------~~~fD~V~ani~~~~l~~l~~~~~~~Lkp  210 (254)
T d2nxca1         141 LGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP--------FGPFDLLVANLYAELHAALAPRYREALVP  210 (254)
T ss_dssp             TTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG--------GCCEEEEEEECCHHHHHHHHHHHHHHEEE
T ss_pred             cCCEEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccccc--------ccccchhhhccccccHHHHHHHHHHhcCC
Confidence            4789999999999999999999999984  5789999877543        46899999886555567778888999999


Q ss_pred             CeEEEEeccc
Q 031568           93 GGIAVYDNTL  102 (157)
Q Consensus        93 gG~iv~~~~~  102 (157)
                      ||.+++..++
T Consensus       211 GG~lilSgil  220 (254)
T d2nxca1         211 GGRALLTGIL  220 (254)
T ss_dssp             EEEEEEEEEE
T ss_pred             CcEEEEEecc
Confidence            9999987654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=7.4e-12  Score=89.23  Aligned_cols=87  Identities=16%  Similarity=0.269  Sum_probs=72.1

Q ss_pred             CcccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      .|+.|+.++.. .+.++|+++|+++++++.|+++++..+.. ++.++++|+.+..+.       .++||.|++.+.....
T Consensus        86 tG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~~~~~-------~~~fD~I~~~~~~~~~  157 (213)
T d1dl5a1          86 TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPE-------FSPYDVIFVTVGVDEV  157 (213)
T ss_dssp             TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GCCEEEEEECSBBSCC
T ss_pred             cchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHHcccc-------ccchhhhhhhccHHHh
Confidence            47888888874 47899999999999999999999999885 788999999875442       4689999999866554


Q ss_pred             HHHHHHHHhcccCCeEEEE
Q 031568           80 CNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~   98 (157)
                      +   +.+.+.|+|||.+++
T Consensus       158 p---~~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         158 P---ETWFTQLKEGGRVIV  173 (213)
T ss_dssp             C---HHHHHHEEEEEEEEE
T ss_pred             H---HHHHHhcCCCcEEEE
Confidence            4   345678999999987

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7.1e-12  Score=90.09  Aligned_cols=98  Identities=20%  Similarity=0.205  Sum_probs=77.1

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---   77 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---   77 (157)
                      +|+++..++.. +..+|++||+||.+++.|+++++..+  .++.++.+++......+     +.++||.|++|....   
T Consensus        64 ~G~~a~~~a~~-~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~fD~i~fD~~~~~~~  135 (229)
T d1zx0a1          64 MAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL-----PDGHFDGILYDTYPLSEE  135 (229)
T ss_dssp             TSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS-----CTTCEEEEEECCCCCBGG
T ss_pred             chHHHHHHHHc-CCCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccccc-----ccccccceeecccccccc
Confidence            57778777765 45789999999999999999987765  36889999998876654     367899999987422   


Q ss_pred             -----ccHHHHHHHHhcccCCeEEEEecccCCcc
Q 031568           78 -----NYCNYHERLMKLLKVGGIAVYDNTLWGGT  106 (157)
Q Consensus        78 -----~~~~~~~~~~~~L~~gG~iv~~~~~~~~~  106 (157)
                           ....+++.+.++|+|||++++.+..+.+.
T Consensus       136 ~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~  169 (229)
T d1zx0a1         136 TWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGE  169 (229)
T ss_dssp             GTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHH
T ss_pred             cccccCHHHHHHHHHHHcCCCcEEEEEecCCcch
Confidence                 24567888999999999999876655443

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=8e-12  Score=91.63  Aligned_cols=89  Identities=13%  Similarity=0.120  Sum_probs=72.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.-++.+|.. +.++|+++|+||.+++.+++|++.++++++++++++|+.++.+        .+.||.|+++.+.. ..+
T Consensus       119 G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--------~~~~D~Ii~~~p~~-~~~  188 (260)
T d2frna1         119 GHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIADRILMGYVVR-THE  188 (260)
T ss_dssp             TTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCEEEEEECCCSS-GGG
T ss_pred             cHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--------CCCCCEEEECCCCc-hHH
Confidence            4444444444 5679999999999999999999999999899999999987642        56899999987543 356


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      +++.+.++|++||++.+..
T Consensus       189 ~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         189 FIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             GHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhhcCCCCEEEEEe
Confidence            7888999999999997643

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.2e-12  Score=89.67  Aligned_cols=88  Identities=17%  Similarity=0.194  Sum_probs=72.3

Q ss_pred             CcccHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCC----CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568            1 MHLPTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVD----HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         1 ~g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~----~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      .|+.|++|+. ..+.++|+++|+++++++.|++|+++.++.    .+++++.+|+.+..+.       .++||.|++++.
T Consensus        87 sGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~-------~~~fD~I~~~~~  159 (224)
T d1i1na_          87 SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-------EAPYDAIHVGAA  159 (224)
T ss_dssp             TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-------GCCEEEEEECSB
T ss_pred             CCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch-------hhhhhhhhhhcc
Confidence            4888988888 457999999999999999999999987652    4789999999875432       468999999986


Q ss_pred             CcccHHHHHHHHhcccCCeEEEE
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      ....+   +.+.+.|+|||++|+
T Consensus       160 ~~~ip---~~l~~~LkpGG~LV~  179 (224)
T d1i1na_         160 APVVP---QALIDQLKPGGRLIL  179 (224)
T ss_dssp             BSSCC---HHHHHTEEEEEEEEE
T ss_pred             hhhcC---HHHHhhcCCCcEEEE
Confidence            55543   456789999999997

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=7.1e-12  Score=92.20  Aligned_cols=88  Identities=17%  Similarity=0.174  Sum_probs=74.8

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      |..|..+|.. .|+++|+++|+++++++.|++|+++.++.+++.+..+|..+.+.        ...||.||+|..  ...
T Consensus       115 G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~--------~~~~D~V~~d~p--~p~  184 (266)
T d1o54a_         115 GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--------EKDVDALFLDVP--DPW  184 (266)
T ss_dssp             SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--------CCSEEEEEECCS--CGG
T ss_pred             CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc--------ccceeeeEecCC--CHH
Confidence            5567777775 48999999999999999999999999998899999999765432        567999999975  456


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ++++.+.+.|||||.+++-
T Consensus       185 ~~l~~~~~~LKpGG~lv~~  203 (266)
T d1o54a_         185 NYIDKCWEALKGGGRFATV  203 (266)
T ss_dssp             GTHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHhhcCCCCEEEEE
Confidence            7899999999999999873

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.22  E-value=1.5e-11  Score=90.28  Aligned_cols=88  Identities=16%  Similarity=0.169  Sum_probs=72.6

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHc--CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |.-|..||.. .|+++|+++|+++++++.|++|++..  +..++++++++|+.+.  .+     ++++||.||+|.+  .
T Consensus       108 G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~--~~-----~~~~fDaV~ldlp--~  178 (264)
T d1i9ga_         108 GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--EL-----PDGSVDRAVLDML--A  178 (264)
T ss_dssp             SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CC-----CTTCEEEEEEESS--C
T ss_pred             cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc--cc-----cCCCcceEEEecC--C
Confidence            5566777774 68999999999999999999999875  4457899999999763  12     2678999999965  4


Q ss_pred             cHHHHHHHHhcccCCeEEEE
Q 031568           79 YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~   98 (157)
                      ..++++.+.+.|||||.+++
T Consensus       179 P~~~l~~~~~~LkpGG~lv~  198 (264)
T d1i9ga_         179 PWEVLDAVSRLLVAGGVLMV  198 (264)
T ss_dssp             GGGGHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHhccCCCCEEEE
Confidence            46778999999999999987

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.22  E-value=2.4e-11  Score=83.78  Aligned_cols=94  Identities=12%  Similarity=0.166  Sum_probs=64.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-cccH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYC   80 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-~~~~   80 (157)
                      |.....+.+...+++++++|.|+++++.+++|++.+++.+++..  .++..+++....   ..++||+||+|++. ..+.
T Consensus        51 G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~--~~~d~~~~~~~~---~~~~fD~If~DPPY~~~~~  125 (171)
T d1ws6a1          51 GSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVA--LPVEVFLPEAKA---QGERFTVAFMAPPYAMDLA  125 (171)
T ss_dssp             SSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEEC--SCHHHHHHHHHH---TTCCEEEEEECCCTTSCTT
T ss_pred             ccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceee--eehhcccccccc---cCCccceeEEccccccCHH
Confidence            33344443333467999999999999999999999999765544  555444433221   25689999999862 2334


Q ss_pred             HHHHHHH--hcccCCeEEEEec
Q 031568           81 NYHERLM--KLLKVGGIAVYDN  100 (157)
Q Consensus        81 ~~~~~~~--~~L~~gG~iv~~~  100 (157)
                      +.+..+.  .+|+|||+++++.
T Consensus       126 ~~l~~l~~~~ll~~~g~ivie~  147 (171)
T d1ws6a1         126 ALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             HHHHHHHHHTCEEEEEEEEEEE
T ss_pred             HHHHHHHHcCCcCCCeEEEEEe
Confidence            4444443  5899999999864

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=3.5e-11  Score=89.55  Aligned_cols=83  Identities=12%  Similarity=0.213  Sum_probs=67.6

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--------cc
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------NY   79 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--------~~   79 (157)
                      ..+..+|++||+||++++.|++++....  + ++|++++.+|+.+++.+.      .++||+|++|...+        ..
T Consensus       110 ~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~~~yDvIi~D~~dp~~~~~~~L~t  183 (295)
T d1inla_         110 HDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------KNEFDVIIIDSTDPTAGQGGHLFT  183 (295)
T ss_dssp             STTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------SSCEEEEEEEC----------CCS
T ss_pred             cCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC------CCCCCEEEEcCCCCCcCchhhhcc
Confidence            4467899999999999999999886532  2 479999999999998753      56899999996321        13


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~   99 (157)
                      .++++.+.+.|+|||++++.
T Consensus       184 ~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         184 EEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHhhcCCCcEEEEe
Confidence            68899999999999999985

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.3e-11  Score=88.19  Aligned_cols=83  Identities=11%  Similarity=0.223  Sum_probs=66.8

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHc---CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKA---GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYC   80 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~---~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~   80 (157)
                      ..+..+|+.||++|+.++.|++++...   --++|++++.+|+.+++...      .++||+|++|...+       ...
T Consensus        99 ~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~------~~~yDvIi~D~~~p~~~~~~L~t~  172 (285)
T d2o07a1          99 HPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------QDAFDVIITDSSDPMGPAESLFKE  172 (285)
T ss_dssp             CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------SSCEEEEEEECC-----------C
T ss_pred             cCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC------CCCCCEEEEcCCCCCCcccccccH
Confidence            335789999999999999999988642   12479999999999999753      56899999997422       124


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 031568           81 NYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~   99 (157)
                      ++++.+.+.|+|||++++.
T Consensus       173 eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         173 SYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             HHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCeEEEe
Confidence            6899999999999999986

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.1e-11  Score=93.48  Aligned_cols=90  Identities=12%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHc----------CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEE
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKA----------GVDHKINFIESEALSVLDQLLKYSENEGSFDYA   70 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~----------~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I   70 (157)
                      |..|+.||.. .|+++|+++|+++++++.|++|+++.          +..++++++++|+.+....+.     ...||.|
T Consensus       110 G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~-----~~~fD~V  184 (324)
T d2b25a1         110 GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK-----SLTFDAV  184 (324)
T ss_dssp             SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC------------EEEE
T ss_pred             cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccC-----CCCcceE
Confidence            5567777774 58999999999999999999999874          345689999999876544332     4679999


Q ss_pred             EEcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568           71 FVDADKDNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        71 ~iD~~~~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      |+|.+.  ...+++.+.+.|+|||++++
T Consensus       185 ~LD~p~--P~~~l~~~~~~LKpGG~lv~  210 (324)
T d2b25a1         185 ALDMLN--PHVTLPVFYPHLKHGGVCAV  210 (324)
T ss_dssp             EECSSS--TTTTHHHHGGGEEEEEEEEE
T ss_pred             eecCcC--HHHHHHHHHHhccCCCEEEE
Confidence            999653  34578899999999999986

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.20  E-value=8.1e-11  Score=86.75  Aligned_cols=84  Identities=18%  Similarity=0.282  Sum_probs=68.9

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHc-C--CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKA-G--VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYC   80 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~-~--~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~   80 (157)
                      ..+..+|++||+||+.++.|++++... +  -++|++++.+|+.+++...      +++||+|++|...+       ...
T Consensus        96 ~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~------~~~yDvIi~D~~~p~~~~~~L~t~  169 (274)
T d1iy9a_          96 HPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------ENQYDVIMVDSTEPVGPAVNLFTK  169 (274)
T ss_dssp             CTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------CSCEEEEEESCSSCCSCCCCCSTT
T ss_pred             cCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc------CCCCCEEEEcCCCCCCcchhhccH
Confidence            345789999999999999999988642 2  2468999999999999753      57899999997432       246


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 031568           81 NYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ++++.+.+.|+|+|+++...
T Consensus       170 eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         170 GFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             HHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHhhcCCCceEEEec
Confidence            88999999999999999853

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=3e-10  Score=84.10  Aligned_cols=126  Identities=18%  Similarity=0.203  Sum_probs=89.0

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc------
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------   78 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~------   78 (157)
                      |+.++....+++|+++|+++..++..++++++.|.. .+.+...|...... .     ..+.||.|++|++++.      
T Consensus       117 t~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~-~-----~~~~fd~IL~DaPCSg~G~~rr  189 (284)
T d1sqga2         117 TTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQW-C-----GEQQFDRILLDAPCSATGVIRR  189 (284)
T ss_dssp             HHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHH-H-----TTCCEEEEEEECCCCCGGGTTT
T ss_pred             hhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchh-c-----ccccccEEEEeccccccCcccc
Confidence            556666566799999999999999999999999986 45555555433221 1     1467999999986432      


Q ss_pred             -------------------cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCe
Q 031568           79 -------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV  139 (157)
Q Consensus        79 -------------------~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  139 (157)
                                         -..+++.+.++|+|||.||+..+...     |+         +....++.|++   +++++
T Consensus       190 ~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~-----~~---------ENE~vv~~~l~---~~~~~  252 (284)
T d1sqga2         190 HPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL-----PE---------ENSLQIKAFLQ---RTADA  252 (284)
T ss_dssp             CTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC-----GG---------GTHHHHHHHHH---HCTTC
T ss_pred             ccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc-----hh---------hCHHHHHHHHH---hCCCc
Confidence                               13567788889999999999988652     22         15667788854   44444


Q ss_pred             e-----------EEeeec---CCeeEEEE
Q 031568          140 Q-----------LSHVAL---GDGITICR  154 (157)
Q Consensus       140 ~-----------~~~~p~---~~G~~v~~  154 (157)
                      +           ..++|.   +|||++|+
T Consensus       253 ~~~~~~~~~~~~~~~~P~~~~~dGFF~A~  281 (284)
T d1sqga2         253 ELCETGTPEQPGKQNLPGAEEGDGFFYAK  281 (284)
T ss_dssp             EECSSBCSSSBSEEECCCTTSCCSEEEEE
T ss_pred             EEecCCCCCCCcEEECCCCCCcccEEEEE
Confidence            3           234442   58999987

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.19  E-value=6.4e-11  Score=88.58  Aligned_cols=82  Identities=16%  Similarity=0.270  Sum_probs=65.2

Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccHH
Q 031568           12 NKILQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCN   81 (157)
Q Consensus        12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~~   81 (157)
                      .+..+|++||+|++.++.|++++....  . ++|++++.+|+.+++...      .++||+|++|...+       ...+
T Consensus       128 ~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~------~~~yDvII~D~~dp~~~~~~L~t~e  201 (312)
T d2b2ca1         128 ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------KNEFDVIITDSSDPVGPAESLFGQS  201 (312)
T ss_dssp             TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------TTCEEEEEECCC-------------
T ss_pred             CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC------CCCCCEEEEcCCCCCCcchhhhhHH
Confidence            356799999999999999999886532  1 378999999999999753      57899999997432       2357


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      +++.+.+.|+|||+++..
T Consensus       202 Fy~~~~~~L~~~Gi~v~q  219 (312)
T d2b2ca1         202 YYELLRDALKEDGILSSQ  219 (312)
T ss_dssp             HHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHhhcCCCcEEEEe
Confidence            899999999999999986

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.6e-11  Score=88.66  Aligned_cols=86  Identities=14%  Similarity=0.206  Sum_probs=71.1

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---c----
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---D----   77 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~----   77 (157)
                      .+.++..+|+.+|+++|+++.+++.|++|++++++. +++++++|..+.++        +++||+|+++++.   .    
T Consensus       123 ~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~~d~~~~~~--------~~~fDlIvsNPPYi~~~~~~~  193 (274)
T d2b3ta1         123 ALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALA--------GQQFAMIVSNPPYIDEQDPHL  193 (274)
T ss_dssp             HHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGT--------TCCEEEEEECCCCBCTTCHHH
T ss_pred             HHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-cceeeecccccccC--------CCceeEEEecchhhhhhhhcc
Confidence            445666889999999999999999999999999985 79999999987543        5689999998741   0    


Q ss_pred             ---------------------ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 ---------------------NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 ---------------------~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                                           .+..+++.+.++|+|||.++++
T Consensus       194 ~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE  236 (274)
T d2b3ta1         194 QQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  236 (274)
T ss_dssp             HSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence                                 1345677778899999999996

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1.5e-10  Score=80.46  Aligned_cols=84  Identities=15%  Similarity=0.110  Sum_probs=68.6

Q ss_pred             hhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHH
Q 031568           10 TGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM   87 (157)
Q Consensus        10 ~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~   87 (157)
                      ..+...+|++||.|+++++.+++|++..+.. +++++.+|+.+++...      ..+||+||+||+..  .+...++.+.
T Consensus        62 lsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~~~~l~~~------~~~fDlIf~DPPY~~~~~~~~l~~l~  134 (183)
T d2fpoa1          62 LSRYAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLAQK------GTPHNIVFVDPPFRRGLLEETINLLE  134 (183)
T ss_dssp             HHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHHSSC------CCCEEEEEECCSSSTTTHHHHHHHHH
T ss_pred             EecCcceeEEEEEeechhhHHHHHHhhcccc-ceeeeeeccccccccc------ccccCEEEEcCccccchHHHHHHHHH
Confidence            3445679999999999999999999998875 7899999999987642      57899999999633  3566677665


Q ss_pred             --hcccCCeEEEEec
Q 031568           88 --KLLKVGGIAVYDN  100 (157)
Q Consensus        88 --~~L~~gG~iv~~~  100 (157)
                        .+|+++|+++++.
T Consensus       135 ~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         135 DNGWLADEALIYVES  149 (183)
T ss_dssp             HTTCEEEEEEEEEEE
T ss_pred             HCCCCCCCeEEEEEe
Confidence              4799999999863

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.15  E-value=1.9e-10  Score=85.38  Aligned_cols=85  Identities=18%  Similarity=0.365  Sum_probs=68.7

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcC---CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYC   80 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~   80 (157)
                      ..+..+|++||+||+.++.+++++....   .++|++++.+|+.+++.+.     .+++||+|++|...+       ...
T Consensus       101 ~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~-----~~~~yDvIi~D~~dp~~~~~~L~t~  175 (290)
T d1xj5a_         101 HASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----AEGSYDAVIVDSSDPIGPAKELFEK  175 (290)
T ss_dssp             CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----CTTCEEEEEECCCCTTSGGGGGGSH
T ss_pred             cccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc-----cccCccEEEEcCCCCCCcchhhCCH
Confidence            3356799999999999999999875421   2478999999999999754     245899999997432       136


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 031568           81 NYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ++++.+.+.|+|||+++...
T Consensus       176 eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         176 PFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             HHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHhcCCCcEEEEec
Confidence            78999999999999999863

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.15  E-value=4.9e-11  Score=84.99  Aligned_cols=89  Identities=13%  Similarity=0.287  Sum_probs=71.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..|..++..  +.+|+++|+++.+++.|+++++..+.. +++++++|+.+. + +     +.++||+|++...   .++
T Consensus        27 G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l-~-~-----~~~~fD~v~~~~~l~~~~d   96 (231)
T d1vl5a_          27 GHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-F-----TDERFHIVTCRIAAHHFPN   96 (231)
T ss_dssp             CHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-S-----CTTCEEEEEEESCGGGCSC
T ss_pred             cHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccccc-cccccccccccc-c-c-----cccccccccccccccccCC
Confidence            6666666654  579999999999999999999998874 899999999874 3 2     2678999998653   235


Q ss_pred             cHHHHHHHHhcccCCeEEEEec
Q 031568           79 YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ....++.+.++|+|||.+++.+
T Consensus        97 ~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          97 PASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEe
Confidence            6788999999999999888743

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.15  E-value=8.9e-11  Score=82.14  Aligned_cols=87  Identities=16%  Similarity=0.167  Sum_probs=68.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--   78 (157)
                      |.-+..++..  ..+|+++|+|+.+++.|++|++.+++. .+++++.+|..+.++        +++||+|++++....  
T Consensus        64 G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~--------~~~fD~Ii~~~p~~~~~  133 (194)
T d1dusa_          64 GVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--------DRKYNKIITNPPIRAGK  133 (194)
T ss_dssp             SHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--------TSCEEEEEECCCSTTCH
T ss_pred             ChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc--------cCCceEEEEcccEEecc
Confidence            4444444443  568999999999999999999999886 469999999987532        578999999875322  


Q ss_pred             --cHHHHHHHHhcccCCeEEEE
Q 031568           79 --YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 --~~~~~~~~~~~L~~gG~iv~   98 (157)
                        ...+++.+.++|+|||.+++
T Consensus       134 ~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         134 EVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhHHHHHHHhcCcCcEEEE
Confidence              34578888899999998876

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.13  E-value=4.1e-11  Score=85.44  Aligned_cols=86  Identities=19%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      .|++|++++.-. +++|+++|.+++.++.|++++++.|+. ++.++++|+.+..+.       .++||.|++.+.....+
T Consensus        89 sGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~gd~~~g~~~-------~~pfD~Iiv~~a~~~ip  159 (215)
T d1jg1a_          89 SGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPP-------KAPYDVIIVTAGAPKIP  159 (215)
T ss_dssp             TSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GCCEEEEEECSBBSSCC
T ss_pred             CChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEECccccCCcc-------cCcceeEEeecccccCC
Confidence            488898888743 578999999999999999999999985 899999999875442       56899999988765544


Q ss_pred             HHHHHHHhcccCCeEEEE
Q 031568           81 NYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~   98 (157)
                      +   .+.+.|++||++|+
T Consensus       160 ~---~l~~qL~~gGrLv~  174 (215)
T d1jg1a_         160 E---PLIEQLKIGGKLII  174 (215)
T ss_dssp             H---HHHHTEEEEEEEEE
T ss_pred             H---HHHHhcCCCCEEEE
Confidence            3   35678999999997

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=7e-11  Score=85.17  Aligned_cols=87  Identities=18%  Similarity=0.356  Sum_probs=68.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------   75 (157)
                      |..+..|+..  +.+|++||++++|++.|++++...+.  +++++++|+.++ + +      +++||+|++-..      
T Consensus        53 G~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l-~-~------~~~fD~I~~~~~~~~~~~  120 (251)
T d1wzna1          53 GIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEI-A-F------KNEFDAVTMFFSTIMYFD  120 (251)
T ss_dssp             CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGC-C-C------CSCEEEEEECSSGGGGSC
T ss_pred             Cccchhhccc--ceEEEEEeeccccccccccccccccc--cchheehhhhhc-c-c------ccccchHhhhhhhhhcCC
Confidence            5555555553  67999999999999999999998776  699999999775 2 1      468999997532      


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEec
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      .+.....++.+.++|+|||+++++-
T Consensus       121 ~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         121 EEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            1234578889999999999999864

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.11  E-value=7.4e-11  Score=84.57  Aligned_cols=88  Identities=17%  Similarity=0.239  Sum_probs=71.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..|..++..  ..+|++||+++.+++.|++++...++. ++.++++|+.+. + +     ++++||+|++...   .++
T Consensus        28 G~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~d   97 (234)
T d1xxla_          28 GHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P-F-----PDDSFDIITCRYAAHHFSD   97 (234)
T ss_dssp             SHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C-S-----CTTCEEEEEEESCGGGCSC
T ss_pred             cHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhcccccc-cccccccccccc-c-c-----cccccceeeeeceeecccC
Confidence            5556666654  579999999999999999999998884 799999999873 3 2     2678999998653   235


Q ss_pred             cHHHHHHHHhcccCCeEEEEe
Q 031568           79 YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ...+++.+.++|+|||.+++.
T Consensus        98 ~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          98 VRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHeeCCCcEEEEE
Confidence            678999999999999988874

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.11  E-value=5.5e-11  Score=87.61  Aligned_cols=94  Identities=11%  Similarity=0.192  Sum_probs=75.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |..+..|+.. .+.+|++||+++.+++.|+++....|+.++++++.+|+.+. + +     +.++||+|++-..   .+.
T Consensus        79 G~~~~~la~~-~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~-~-----~~~sfD~V~~~~~l~h~~d  150 (282)
T d2o57a1          79 GGAARFLVRK-FGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-C-----EDNSYDFIWSQDAFLHSPD  150 (282)
T ss_dssp             SHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-S-----CTTCEEEEEEESCGGGCSC
T ss_pred             cHHHhhhhcc-CCcEEEEEeccchhhhhhhcccccccccccccccccccccc-c-c-----cccccchhhccchhhhccC
Confidence            4444555554 47899999999999999999999999998999999999874 2 2     2578999987542   235


Q ss_pred             cHHHHHHHHhcccCCeEEEEecccC
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      ...+++.+.+.|+|||.+++.+...
T Consensus       151 ~~~~l~~~~~~LkpgG~l~~~~~~~  175 (282)
T d2o57a1         151 KLKVFQECARVLKPRGVMAITDPMK  175 (282)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEeec
Confidence            6788999999999999998865443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.08  E-value=3.2e-10  Score=80.73  Aligned_cols=92  Identities=11%  Similarity=0.089  Sum_probs=73.8

Q ss_pred             cccHHHHHhh--CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC----
Q 031568            2 HLPTKLFMTG--NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD----   75 (157)
Q Consensus         2 g~st~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~----   75 (157)
                      |..|..++..  .|+.+|+++|++++|++.|+++++..+...++++..+|+.+.         +.+.+|+|++...    
T Consensus        51 G~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~d~i~~~~~l~~~  121 (225)
T d1im8a_          51 GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV---------EIKNASMVILNFTLQFL  121 (225)
T ss_dssp             CHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC---------CCCSEEEEEEESCGGGS
T ss_pred             hhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc---------ccccceeeEEeeecccc
Confidence            5556666663  479999999999999999999999888777899999998764         2467999887542    


Q ss_pred             -CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           76 -KDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        76 -~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                       ......+++.+.+.|+|||.+++.+..
T Consensus       122 ~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         122 PPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             CGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ChhhHHHHHHHHHHhCCCCceeeccccc
Confidence             235568899999999999999986543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.06  E-value=3.3e-10  Score=80.04  Aligned_cols=91  Identities=14%  Similarity=0.266  Sum_probs=75.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCc-
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKD-   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~-   77 (157)
                      |-.+..+|+.+|+..+++||+++.++..|.+.+.+.++. ++.++.+|+.+....+     +..++|.|++..   ... 
T Consensus        43 G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~-----~~~~~~~i~i~fPdPw~K~  116 (204)
T d1yzha1          43 GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYF-----EDGEIDRLYLNFSDPWPKK  116 (204)
T ss_dssp             SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTS-----CTTCCSEEEEESCCCCCSG
T ss_pred             CHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhc-----cCCceehhcccccccccch
Confidence            666788888999999999999999999999999999985 8999999998765444     367899998753   211 


Q ss_pred             -------ccHHHHHHHHhcccCCeEEEE
Q 031568           78 -------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 -------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                             -..++++.+.+.|+|||.+.+
T Consensus       117 ~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1         117 RHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             GGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             hhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence                   136889999999999999976

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.02  E-value=2.7e-10  Score=82.10  Aligned_cols=86  Identities=19%  Similarity=0.260  Sum_probs=67.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------   75 (157)
                      |.-+..|+..  +.+|++||.|++|++.|++++...+.  +++++++|+.+.-  +      .++||+|++-..      
T Consensus        49 G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~--~------~~~fD~i~~~~~~~~~~~  116 (246)
T d1y8ca_          49 GNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN--I------NRKFDLITCCLDSTNYII  116 (246)
T ss_dssp             STTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC--C------SCCEEEEEECTTGGGGCC
T ss_pred             CHHHHHHHHh--CCccEeeccchhhhhhccccccccCc--cceeeccchhhhc--c------cccccccceeeeeeeccC
Confidence            5555556654  56999999999999999999988776  6999999998742  1      568999997421      


Q ss_pred             -CcccHHHHHHHHhcccCCeEEEEe
Q 031568           76 -KDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        76 -~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                       ......+++.+.++|+|||.++++
T Consensus       117 ~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         117 DSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             SHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhCCCCeEEEEE
Confidence             123456789999999999999974

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.02  E-value=8.8e-10  Score=80.92  Aligned_cols=84  Identities=18%  Similarity=0.160  Sum_probs=67.0

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC--------------
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--------------   76 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--------------   76 (157)
                      ..|+++|+++|+++++++.|++|++++++.+++.++.+|..+.++..      .++||+|+.+++.              
T Consensus       130 ~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~------~~~fDlIVsNPPYI~~~~~l~~~~~~E  203 (271)
T d1nv8a_         130 KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEK------FASIEMILSNPPYVKSSAHLPKDVLFE  203 (271)
T ss_dssp             HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGG------TTTCCEEEECCCCBCGGGSCTTSCCCS
T ss_pred             hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccc------cCcccEEEEcccccCcccccceeeeec
Confidence            56899999999999999999999999999989999999998876532      4689999998741              


Q ss_pred             ---------cccHHHHHHHHhcccCCeEEEEec
Q 031568           77 ---------DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 ---------~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                               ....-+.+.+.++|+|||+++++.
T Consensus       204 P~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei  236 (271)
T d1nv8a_         204 PPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  236 (271)
T ss_dssp             CHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             cccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence                     011222233457999999999874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.01  E-value=5.4e-10  Score=78.10  Aligned_cols=89  Identities=13%  Similarity=0.122  Sum_probs=71.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~   76 (157)
                      |..|..|+..  +.+|+++|+++.+++.++++.+..+++ ++++..+|+.+...        +++||+|++...     .
T Consensus        42 G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~--------~~~fD~I~~~~~~~~~~~  110 (198)
T d2i6ga1          42 GRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF--------DGEYDFILSTVVMMFLEA  110 (198)
T ss_dssp             SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC--------CCCEEEEEEESCGGGSCT
T ss_pred             CHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc--------cccccEEEEeeeeecCCH
Confidence            5556666654  679999999999999999999999885 79999999876532        578999998652     2


Q ss_pred             cccHHHHHHHHhcccCCeEEEEecc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      .....+++.+.++|+|||++++...
T Consensus       111 ~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         111 QTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             THHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            3456789999999999999988543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=1.7e-10  Score=82.64  Aligned_cols=88  Identities=14%  Similarity=0.138  Sum_probs=69.3

Q ss_pred             CcccHHHHHhh------CCCcEEEEEeCChhHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHhhcCCCCCceeEE
Q 031568            1 MHLPTKLFMTG------NKILQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENEGSFDYA   70 (157)
Q Consensus         1 ~g~st~~l~~~------~~~~~v~~ve~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I   70 (157)
                      .|+.|++++..      ++..+|+++|+++++++.|++|+...+.    ..++.++++|+.+..+.       .++||.|
T Consensus        91 sGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~-------~~~fD~I  163 (223)
T d1r18a_          91 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-------NAPYNAI  163 (223)
T ss_dssp             TSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-------GCSEEEE
T ss_pred             CCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc-------ccceeeE
Confidence            48889888772      2457999999999999999999765432    13799999999875442       4689999


Q ss_pred             EEcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568           71 FVDADKDNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        71 ~iD~~~~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      ++++..+..++   .+.+.|++||++|+
T Consensus       164 iv~~a~~~~p~---~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         164 HVGAAAPDTPT---ELINQLASGGRLIV  188 (223)
T ss_dssp             EECSCBSSCCH---HHHHTEEEEEEEEE
T ss_pred             EEEeechhchH---HHHHhcCCCcEEEE
Confidence            99987665553   45789999999987

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.99  E-value=3.8e-10  Score=83.22  Aligned_cols=92  Identities=16%  Similarity=0.208  Sum_probs=72.7

Q ss_pred             cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 031568            2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD   77 (157)
Q Consensus         2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~   77 (157)
                      |..+..++...| +.+|+++|+++.+++.|+++++..+.  +++++.+|+.+. + +      .++||+|++...   .+
T Consensus        39 G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~-~-~------~~~fD~v~~~~~l~~~~  108 (281)
T d2gh1a1          39 GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-E-L------NDKYDIAICHAFLLHMT  108 (281)
T ss_dssp             THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-C-C------SSCEEEEEEESCGGGCS
T ss_pred             CHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccc-c-c------cCCceEEEEehhhhcCC
Confidence            555566666555 68999999999999999999988775  699999998763 2 1      467999998763   23


Q ss_pred             ccHHHHHHHHhcccCCeEEEEecccC
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      +....++.+.+.|+|||.+++-+..|
T Consensus       109 d~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1         109 TPETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             SHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             CHHHHHHHHHHHcCcCcEEEEEECCc
Confidence            56778999999999999998765443

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.99  E-value=3.4e-10  Score=81.05  Aligned_cols=83  Identities=18%  Similarity=0.275  Sum_probs=66.8

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      .|+.|++|+..  .++|+++|++++.++.|++++...   .+++++++|.....+.       .++||.|++.+..+..+
T Consensus        81 sGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~-------~~pfD~Iiv~~a~~~ip  148 (224)
T d1vbfa_          81 IGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEE-------EKPYDRVVVWATAPTLL  148 (224)
T ss_dssp             TSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGG-------GCCEEEEEESSBBSSCC
T ss_pred             CCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcc---cccccccCchhhcchh-------hhhHHHHHhhcchhhhh
Confidence            48888888775  579999999999999999987643   4899999998775442       46799999988655544


Q ss_pred             HHHHHHHhcccCCeEEEE
Q 031568           81 NYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~   98 (157)
                         +.+.+.|+|||.+|+
T Consensus       149 ---~~l~~qLk~GGrLV~  163 (224)
T d1vbfa_         149 ---CKPYEQLKEGGIMIL  163 (224)
T ss_dssp             ---HHHHHTEEEEEEEEE
T ss_pred             ---HHHHHhcCCCCEEEE
Confidence               445678999999987

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.98  E-value=1.1e-09  Score=79.36  Aligned_cols=90  Identities=12%  Similarity=0.142  Sum_probs=73.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..++.++|+.+++++|. |++++.+++++...++.++++++.+|+.+..         ..+||+|++.....    
T Consensus        92 G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~---------~~~~D~v~~~~vlh~~~d  161 (253)
T d1tw3a2          92 GGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---------PRKADAIILSFVLLNWPD  161 (253)
T ss_dssp             SHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SSCEEEEEEESCGGGSCH
T ss_pred             CHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc---------ccchhheeeccccccCCc
Confidence            666777888899999999998 7899999999999999899999999986531         35799999865322    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                       ....+++.+.+.|+|||.+++.+.
T Consensus       162 ~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         162 HDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhhHHHHHHHHHhcCCCcEEEEEec
Confidence             224678999999999998877543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.95  E-value=2.5e-09  Score=74.12  Aligned_cols=87  Identities=15%  Similarity=0.173  Sum_probs=68.9

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHH
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM   87 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~   87 (157)
                      .+...+|++||.++.+++.+++|++..+..+ ...++..|+.+++....    ...+||+||+||+-.  .+...++.+.
T Consensus        63 SRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~----~~~~fDlIFlDPPY~~~~~~~~l~~l~  138 (183)
T d2ifta1          63 SRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ----NQPHFDVVFLDPPFHFNLAEQAISLLC  138 (183)
T ss_dssp             HTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC----SSCCEEEEEECCCSSSCHHHHHHHHHH
T ss_pred             eecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccc----cCCcccEEEechhHhhhhHHHHHHHHH
Confidence            4467799999999999999999999998754 58889999988775432    235799999999743  2556666665


Q ss_pred             --hcccCCeEEEEecc
Q 031568           88 --KLLKVGGIAVYDNT  101 (157)
Q Consensus        88 --~~L~~gG~iv~~~~  101 (157)
                        .+|+++|+++++..
T Consensus       139 ~~~~L~~~~liiiE~~  154 (183)
T d2ifta1         139 ENNWLKPNALIYVETE  154 (183)
T ss_dssp             HTTCEEEEEEEEEEEE
T ss_pred             HhCCcCCCcEEEEEec
Confidence              48999999999753

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=1.6e-09  Score=79.94  Aligned_cols=84  Identities=6%  Similarity=0.129  Sum_probs=70.2

Q ss_pred             HhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCcccHHHH
Q 031568            9 MTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYH   83 (157)
Q Consensus         9 ~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~~~~~   83 (157)
                      ++...+.+|++|+++++.++.|++.+++.|+..++.+...|..+.          .++||.|++-.     ..+++..+|
T Consensus        70 ~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----------~~~fD~i~si~~~eh~~~~~~~~~f  139 (280)
T d2fk8a1          70 AVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----------AEPVDRIVSIEAFEHFGHENYDDFF  139 (280)
T ss_dssp             HHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----------CCCCSEEEEESCGGGTCGGGHHHHH
T ss_pred             HHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----------ccchhhhhHhhHHHHhhhhhHHHHH
Confidence            333347899999999999999999999999988899999987653          57899998743     234678899


Q ss_pred             HHHHhcccCCeEEEEeccc
Q 031568           84 ERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~~~~~  102 (157)
                      +.+.++|+|||.+++..+.
T Consensus       140 ~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         140 KRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             HHHHHHSCTTCEEEEEEEE
T ss_pred             HHHHhccCCCceEEEEEee
Confidence            9999999999999987654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.92  E-value=2.7e-09  Score=78.90  Aligned_cols=84  Identities=6%  Similarity=0.090  Sum_probs=71.4

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCcccHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNY   82 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~~~~   82 (157)
                      +|+.. +++|++|.++++.++.|++.+++.|+.+++++..+|..+.          +++||.|+.-.     ...++..+
T Consensus        80 ~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~----------~~~fD~i~si~~~eh~~~~~~~~~  148 (285)
T d1kpga_          80 AVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----------DEPVDRIVSIGAFEHFGHERYDAF  148 (285)
T ss_dssp             HHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----------CCCCSEEEEESCGGGTCTTTHHHH
T ss_pred             HHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc----------cccccceeeehhhhhcCchhHHHH
Confidence            45554 7999999999999999999999999999999999998653          56899998633     33567899


Q ss_pred             HHHHHhcccCCeEEEEeccc
Q 031568           83 HERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        83 ~~~~~~~L~~gG~iv~~~~~  102 (157)
                      ++.+.++|+|||.+++..+.
T Consensus       149 ~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         149 FSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             HHHHHHHSCTTCEEEEEEEE
T ss_pred             HHHHHhhcCCCCcEEEEEEe
Confidence            99999999999999987664

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.91  E-value=9.2e-10  Score=77.64  Aligned_cols=88  Identities=14%  Similarity=0.191  Sum_probs=67.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |.-|..++.  .+.+|+++|+++.+++.|++++...+.  ++.++.+|+.+. + +     +.++||+|++.....    
T Consensus        49 G~~~~~la~--~~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l-~-~-----~~~~fD~I~~~~~l~~~~~  117 (226)
T d1ve3a1          49 GGFSFLLED--YGFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKL-S-F-----EDKTFDYVIFIDSIVHFEP  117 (226)
T ss_dssp             SHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSC-C-S-----CTTCEEEEEEESCGGGCCH
T ss_pred             chhhhhHhh--hhcccccccccccchhhhhhhhccccc--cccccccccccc-c-c-----cCcCceEEEEecchhhCCh
Confidence            444444554  478999999999999999999988764  578899999874 2 1     257899999865322    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                       ....+++.+.++|+|||.+++..
T Consensus       118 ~d~~~~l~~i~~~LkpgG~lii~~  141 (226)
T d1ve3a1         118 LELNQVFKEVRRVLKPSGKFIMYF  141 (226)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHHHHHHHHHHHHcCcCcEEEEEE
Confidence             34567899999999999988754

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.91  E-value=2e-09  Score=77.88  Aligned_cols=91  Identities=10%  Similarity=0.033  Sum_probs=68.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |--+..++.. +.++|+|||+++++++.|++.+...+...++.++++|+......      ..++||+|++.....    
T Consensus        36 G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~------~~~~fD~V~~~~~l~~~~~  108 (252)
T d1ri5a_          36 GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD------LGKEFDVISSQFSFHYAFS  108 (252)
T ss_dssp             TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC------CSSCEEEEEEESCGGGGGS
T ss_pred             cHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc------ccccceEEEEcceeeecCC
Confidence            4334445544 45789999999999999999998888777899999998643111      146899999865322    


Q ss_pred             ---ccHHHHHHHHhcccCCeEEEEe
Q 031568           78 ---NYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        78 ---~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                         ....+++.+.++|+|||++++.
T Consensus       109 ~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_         109 TSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             SHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHhceeCCCCEEEEE
Confidence               2346788889999999999874

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=6.4e-09  Score=77.02  Aligned_cols=84  Identities=6%  Similarity=0.084  Sum_probs=70.4

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------------
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------------   75 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------------   75 (157)
                      +|+.. +.+|++|+++++.++.|++.++..|+.+++++...|...          .+++||.|++-..            
T Consensus        79 ~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~----------~~~~fD~i~sie~~eH~~~~~~~~~  147 (291)
T d1kpia_          79 AVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE----------FDEPVDRIVSLGAFEHFADGAGDAG  147 (291)
T ss_dssp             HHHHH-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG----------CCCCCSEEEEESCGGGTTCCSSCCS
T ss_pred             HHHhc-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc----------cccccceEeechhHHhcchhhhhhH
Confidence            45454 689999999999999999999999999999999999753          1678999996431            


Q ss_pred             CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           76 KDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        76 ~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      .++|..+|+.+.++|+|||.+++..+.
T Consensus       148 ~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         148 FERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             TTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence            135789999999999999999987664

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1e-09  Score=78.00  Aligned_cols=79  Identities=13%  Similarity=0.211  Sum_probs=63.9

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----ccHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----~~~~~~~~~~~   88 (157)
                      ..+|++||+++++++.|++++...+.. +++++++|+.++..       +.++||+|++.....     ....+++.+.+
T Consensus        83 ~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~~-------~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~  154 (222)
T d2ex4a1          83 FREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTP-------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKG  154 (222)
T ss_dssp             CSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCC-------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             CCEEEEeecCHHHhhcccccccccccc-cccccccccccccc-------ccccccccccccccccchhhhhhhHHHHHHH
Confidence            468999999999999999999887764 78999999988521       257899999865322     23468899999


Q ss_pred             cccCCeEEEEec
Q 031568           89 LLKVGGIAVYDN  100 (157)
Q Consensus        89 ~L~~gG~iv~~~  100 (157)
                      .|+|||.+++.+
T Consensus       155 ~Lk~~G~~~i~~  166 (222)
T d2ex4a1         155 SLRPNGIIVIKD  166 (222)
T ss_dssp             HEEEEEEEEEEE
T ss_pred             hcCCcceEEEEE
Confidence            999999998754

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.87  E-value=3.3e-09  Score=75.02  Aligned_cols=92  Identities=14%  Similarity=0.038  Sum_probs=70.9

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-Cccc
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-KDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-~~~~   79 (157)
                      .|..|..++...|+++|+++|++|.+++.|+++++..+   ++.++.+|+..... ..   .....+|+||.|.. ....
T Consensus        67 ~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~-~~---~~~~~vd~v~~~~~~~~~~  139 (209)
T d1nt2a_          67 SGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWK-YS---GIVEKVDLIYQDIAQKNQI  139 (209)
T ss_dssp             TSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGG-TT---TTCCCEEEEEECCCSTTHH
T ss_pred             CCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccc-cc---cccceEEEEEecccChhhH
Confidence            36677778877788999999999999999999988763   79999999876321 11   01346888888854 3345


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++..+.+.|+|||.+++.
T Consensus       140 ~~~l~~~~~~LkpgG~l~i~  159 (209)
T d1nt2a_         140 EILKANAEFFLKEKGEVVIM  159 (209)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHhccCCeEEEE
Confidence            66788999999999999874

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.87  E-value=1.9e-08  Score=75.17  Aligned_cols=107  Identities=23%  Similarity=0.250  Sum_probs=80.5

Q ss_pred             cHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc----
Q 031568            4 PTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----   78 (157)
Q Consensus         4 st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~----   78 (157)
                      =|+.++. ....+.++++|+++..+...++++++.|.. ++.+...|.... +..      ...||.|++|++++.    
T Consensus       130 Kt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~-~~~------~~~fD~ILvDaPCSg~G~~  201 (313)
T d1ixka_         130 KTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHI-GEL------NVEFDKILLDAPCTGSGTI  201 (313)
T ss_dssp             HHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGG-GGG------CCCEEEEEEECCTTSTTTC
T ss_pred             hhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-cccccccccccc-ccc------cccccEEEEccccccCCce
Confidence            3555665 345899999999999999999999999986 788888888764 222      568999999986431    


Q ss_pred             ---------------------cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHH
Q 031568           79 ---------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS  132 (157)
Q Consensus        79 ---------------------~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (157)
                                           -.+++..+.++|+|||.+|+..+...     |+         +....++.|++.
T Consensus       202 ~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~-----~e---------ENE~VV~~~L~~  262 (313)
T d1ixka_         202 HKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE-----PE---------ENEFVIQWALDN  262 (313)
T ss_dssp             C--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC-----GG---------GTHHHHHHHHHH
T ss_pred             eeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC-----hH---------hHHHHHHHHHhc
Confidence                                 12467778889999999999888642     22         155667777653

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3e-08  Score=73.38  Aligned_cols=94  Identities=15%  Similarity=0.096  Sum_probs=69.0

Q ss_pred             cHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc---
Q 031568            4 PTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY---   79 (157)
Q Consensus         4 st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~---   79 (157)
                      -|+.++. ..+.++|+++|+++..++.+++|+++.|+. ++.+...|+...-+...    ..++||.|++|++++..   
T Consensus       108 Kt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~----~~~~fD~VL~DaPCSg~G~~  182 (293)
T d2b9ea1         108 KTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDP----RYHEVHYILLDPSCSGSGMP  182 (293)
T ss_dssp             HHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCG----GGTTEEEEEECCCCCC----
T ss_pred             HHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhccccc----ccceeeEEeecCcccchhhh
Confidence            3566665 346899999999999999999999999986 79999999876533211    12579999999853210   


Q ss_pred             ------------------------HHHHHHHHhcccCCeEEEEecccC
Q 031568           80 ------------------------CNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        80 ------------------------~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                                              ..++..+. .++|||.||+..+..
T Consensus       183 ~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         183 SRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             cccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence                                    12333344 479999999988764

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.83  E-value=5.2e-09  Score=76.07  Aligned_cols=89  Identities=12%  Similarity=0.055  Sum_probs=71.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |..+..+++++|+.+++++|+ |++++.++++++..+..++++++.+|..+.+         ..+||+|++-.-..    
T Consensus        93 G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~---------p~~~D~v~~~~vLh~~~d  162 (256)
T d1qzza2          93 GGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL---------PVTADVVLLSFVLLNWSD  162 (256)
T ss_dssp             SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SCCEEEEEEESCGGGSCH
T ss_pred             CHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc---------cccchhhhccccccccCc
Confidence            555666888999999999998 8999999999999999999999999987532         34699999754322    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                       ....+++.+.+.|+|||.+++-+
T Consensus       163 ~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         163 EDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhhcCCcceeEEEE
Confidence             23467899999999999777643

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.76  E-value=4.1e-08  Score=68.41  Aligned_cols=92  Identities=16%  Similarity=0.157  Sum_probs=69.8

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc------
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------   78 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~------   78 (157)
                      |..++.+.|+++|+++|.++++++.|+++++..+  +++.+++++..+.-..+..  ...++||.|++|.+.+.      
T Consensus        38 s~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~--~~~~~vdgIl~DlGvSs~Qld~~  113 (192)
T d1m6ya2          38 SRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKT--LGIEKVDGILMDLGVSTYQLKGE  113 (192)
T ss_dssp             HHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHH--TTCSCEEEEEEECSCCHHHHHTS
T ss_pred             HHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHH--cCCCCcceeeeccchhHhhhhhh
Confidence            4455566799999999999999999999998765  5899999988765322211  12478999999976432      


Q ss_pred             ------cHHHHHHHHhcccCCeEEEEec
Q 031568           79 ------YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 ------~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                            ..+.++.+.++|+|||.+++-+
T Consensus       114 ~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2         114 NRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             HTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             hccchhHHHHHHHHHHhcCCCCeeeeec
Confidence                  3456777889999999998743

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.72  E-value=3.9e-08  Score=70.36  Aligned_cols=92  Identities=13%  Similarity=-0.012  Sum_probs=67.8

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-ccc
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-~~~   79 (157)
                      .|.+|..++...|+++|+++|++|.+++.+++.+++.   +++..+.+|+....+...    ....+|+++.+... ...
T Consensus        85 sG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~----~~~~v~~i~~~~~~~~~~  157 (230)
T d1g8sa_          85 AGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYAN----IVEKVDVIYEDVAQPNQA  157 (230)
T ss_dssp             SSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTT----TCCCEEEEEECCCSTTHH
T ss_pred             cCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCccccc----ccceeEEeeccccchHHH
Confidence            3777788888779999999999999999998876543   468889999876543211    12345566666533 345


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..++..+.+.|+|||.+++.
T Consensus       158 ~~~l~~~~r~LKpgG~~~i~  177 (230)
T d1g8sa_         158 EILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHhcccCceEEEE
Confidence            56688889999999988774

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=1.1e-08  Score=74.82  Aligned_cols=83  Identities=14%  Similarity=0.167  Sum_probs=66.1

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      .|..+..++...|+.+++++|+++.+++.|++..      .+++++++|+.+. + +     .+++||+|+.......  
T Consensus        95 ~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l-~-~-----~~~sfD~v~~~~~~~~--  159 (268)
T d1p91a_          95 EGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P-F-----SDTSMDAIIRIYAPCK--  159 (268)
T ss_dssp             TSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S-B-----CTTCEEEEEEESCCCC--
T ss_pred             CcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhc-c-C-----CCCCEEEEeecCCHHH--
Confidence            3667778888889999999999999999998742      3789999999764 3 2     2678999997654333  


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 031568           81 NYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~  100 (157)
                        ++++.+.|||||++++..
T Consensus       160 --~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         160 --AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             --HHHHHHHEEEEEEEEEEE
T ss_pred             --HHHHHHHhCCCcEEEEEe
Confidence              567889999999999854

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=5.6e-08  Score=71.48  Aligned_cols=93  Identities=13%  Similarity=0.184  Sum_probs=66.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC---CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---   75 (157)
                      |.-+..|+..  +.+|+++|+|++|++.|+++....+..   .+..+...+....-..+.    ..++||.|++-..   
T Consensus        68 G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fd~v~~~~~~~~  141 (292)
T d1xvaa_          68 GVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP----AGDGFDAVICLGNSFA  141 (292)
T ss_dssp             SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC----CTTCEEEEEECSSCGG
T ss_pred             cHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC----CCCCceEEEEecCchh
Confidence            5445556554  679999999999999999999887653   234566677665433321    2468999987431   


Q ss_pred             --------CcccHHHHHHHHhcccCCeEEEEec
Q 031568           76 --------KDNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        76 --------~~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                              ......+++.+.++|+|||+++++.
T Consensus       142 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         142 HLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             GSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence                    1124568999999999999999864

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.66  E-value=3.4e-08  Score=70.56  Aligned_cols=91  Identities=15%  Similarity=0.063  Sum_probs=68.7

Q ss_pred             cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-cc
Q 031568            2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-NY   79 (157)
Q Consensus         2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-~~   79 (157)
                      |..|..++.. .|+++|+++|+++.+++.++++++..+   ++..+.+|+..... ..   ...+.+|+||.|.... ..
T Consensus        85 G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~-~~---~~~~~vD~i~~d~~~~~~~  157 (227)
T d1g8aa_          85 GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEE-YR---ALVPKVDVIFEDVAQPTQA  157 (227)
T ss_dssp             TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGG-GT---TTCCCEEEEEECCCSTTHH
T ss_pred             CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCccc-cc---ccccceEEEEEEccccchH
Confidence            6667778774 489999999999999999999886543   57778888754321 11   1246799999997544 34


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 031568           80 CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..+++.+.+.|+|||.+++.
T Consensus       158 ~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         158 KILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             HHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHhcccCCeEEEE
Confidence            56788899999999998874

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.66  E-value=1.3e-08  Score=70.01  Aligned_cols=92  Identities=9%  Similarity=-0.005  Sum_probs=67.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC-----------CCcEEEEEccHHHHHHHHhhcCCCCCceeEE
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV-----------DHKINFIESEALSVLDQLLKYSENEGSFDYA   70 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I   70 (157)
                      |-.+.+||.+  +.+|+++|+++.+++.|++.....+.           ...++++.+|+.+..+..      ...||.|
T Consensus        32 G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~------~~~~D~i  103 (201)
T d1pjza_          32 SQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD------IGHCAAF  103 (201)
T ss_dssp             SHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH------HHSEEEE
T ss_pred             CHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc------ccceeEE
Confidence            5566677764  78999999999999999998865432           234678899987754432      3579999


Q ss_pred             EEcCCC-----cccHHHHHHHHhcccCCeEEEEecc
Q 031568           71 FVDADK-----DNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        71 ~iD~~~-----~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                      +.-...     .....+++.+.+.|+|||.+++...
T Consensus       104 ~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~  139 (201)
T d1pjza_         104 YDRAAMIALPADMRERYVQHLEALMPQACSGLLITL  139 (201)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             EEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence            875432     2346788899999999998876543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.66  E-value=1.4e-08  Score=72.26  Aligned_cols=83  Identities=16%  Similarity=0.233  Sum_probs=61.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC----Cc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD----KD   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~----~~   77 (157)
                      |..|..++.  .+.+|+++|+++.+++.|+++.    ..   .++.+|+.+. + +     ++++||+|++-..    .+
T Consensus        54 G~~~~~l~~--~~~~v~giD~s~~~l~~a~~~~----~~---~~~~~~~~~l-~-~-----~~~~fD~ii~~~~~~~~~~  117 (246)
T d2avna1          54 GKWSLFLQE--RGFEVVLVDPSKEMLEVAREKG----VK---NVVEAKAEDL-P-F-----PSGAFEAVLALGDVLSYVE  117 (246)
T ss_dssp             CHHHHHHHT--TTCEEEEEESCHHHHHHHHHHT----CS---CEEECCTTSC-C-S-----CTTCEEEEEECSSHHHHCS
T ss_pred             chhcccccc--cceEEEEeeccccccccccccc----cc---cccccccccc-c-c-----ccccccceeeecchhhhhh
Confidence            555555654  3789999999999999999853    22   2567888764 2 2     2578999996432    33


Q ss_pred             ccHHHHHHHHhcccCCeEEEEec
Q 031568           78 NYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        78 ~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                      +....++.+.++|+|||++++..
T Consensus       118 d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         118 NKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHHHHHHHHHhhcCcCcEEEEEE
Confidence            56778999999999999999864

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.65  E-value=1.5e-08  Score=73.52  Aligned_cols=89  Identities=10%  Similarity=0.098  Sum_probs=65.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |--|..|+... ..+|++||+++++++.|++++...   .+++++++|+.++-.       +.++||+|++.....    
T Consensus       105 G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~-------~~~~fD~I~~~~vl~hl~d  173 (254)
T d1xtpa_         105 GRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATL-------PPNTYDLIVIQWTAIYLTD  173 (254)
T ss_dssp             THHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCC-------CSSCEEEEEEESCGGGSCH
T ss_pred             ChhhHHHHhhc-CceEEEEcCCHHHHHhhhcccccc---ccceeEEcccccccc-------CCCccceEEeeccccccch
Confidence            43444455433 458999999999999999876532   468999999987521       257899999865332    


Q ss_pred             -ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 -NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                       ....+++.+.+.|+|||.+++.+.
T Consensus       174 ~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         174 ADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhHHHHHHHHHhcCCCcEEEEEec
Confidence             234678999999999999988543

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.63  E-value=1.8e-07  Score=71.33  Aligned_cols=86  Identities=13%  Similarity=0.098  Sum_probs=70.4

Q ss_pred             HHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCC--------------cEEEEEccHHHHHHHHhhcCCCCCceeEEE
Q 031568            6 KLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDH--------------KINFIESEALSVLDQLLKYSENEGSFDYAF   71 (157)
Q Consensus         6 ~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~--------------~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~   71 (157)
                      +..+...+..+|++.|+|+++++.+++|++.++..+              .+.+.+.|+...+...      .+.||+|.
T Consensus        61 iRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~------~~~fDvID  134 (375)
T d2dula1          61 IRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER------HRYFHFID  134 (375)
T ss_dssp             HHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS------TTCEEEEE
T ss_pred             HHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHhh------cCcCCccc
Confidence            334555567799999999999999999999987642              4788999998887643      56799999


Q ss_pred             EcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568           72 VDADKDNYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        72 iD~~~~~~~~~~~~~~~~L~~gG~iv~   98 (157)
                      +|+-- ....+++.+.+.++.||+|.+
T Consensus       135 iDPfG-s~~pfldsAi~a~~~~Gll~v  160 (375)
T d2dula1         135 LDPFG-SPMEFLDTALRSAKRRGILGV  160 (375)
T ss_dssp             ECCSS-CCHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCC-CcHHHHHHHHHHhccCCEEEE
Confidence            99843 346799999999999999987

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=3.7e-08  Score=70.08  Aligned_cols=94  Identities=11%  Similarity=0.100  Sum_probs=68.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC----------------CCCcEEEEEccHHHHHHHHhhcCCCCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG----------------VDHKINFIESEALSVLDQLLKYSENEG   65 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~----------------~~~~i~~~~~d~~~~l~~~~~~~~~~~   65 (157)
                      |.-+.+||.  .+.+|++||+++.+++.|++.....+                ...+++++++|+.+..+.      ..+
T Consensus        57 G~~a~~LA~--~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~------~~~  128 (229)
T d2bzga1          57 AVEMKWFAD--RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRT------NIG  128 (229)
T ss_dssp             CTHHHHHHH--TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGS------CCC
T ss_pred             cHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcccc------ccC
Confidence            444555655  37899999999999999998765321                124799999999876442      257


Q ss_pred             ceeEEEEcC-----CCcccHHHHHHHHhcccCCeEEEEecccC
Q 031568           66 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        66 ~fD~I~iD~-----~~~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      .||+|+.-.     .......+++.+.++|+|||.+++....+
T Consensus       129 ~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~  171 (229)
T d2bzga1         129 KFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY  171 (229)
T ss_dssp             CEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred             ceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence            899998643     22345678899999999999877654433

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=4.3e-08  Score=73.09  Aligned_cols=84  Identities=17%  Similarity=0.183  Sum_probs=65.0

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------CcccHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------KDNYCN   81 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------~~~~~~   81 (157)
                      +|++....+|+++|.++. ...++++++.+++.++|+++.+|+.+.-  +     +.++||+|+.+..      ...+..
T Consensus        50 ~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~--~-----~~~~~D~ivs~~~~~~l~~e~~~~~  121 (316)
T d1oria_          50 FAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVE--L-----PVEKVDIIISEWMGYCLFYESMLNT  121 (316)
T ss_dssp             HHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCC--C-----SSSCEEEEEECCCBBTBTBTCCHHH
T ss_pred             HHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcc--c-----ccceeEEEeeeeeeeeeccHHHHHH
Confidence            344444568999999975 5788889999999999999999998752  1     2578999998642      123567


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      ++..+.++|+|||.++..
T Consensus       122 ~l~~~~r~Lkp~G~iiP~  139 (316)
T d1oria_         122 VLHARDKWLAPDGLIFPD  139 (316)
T ss_dssp             HHHHHHHHEEEEEEEESC
T ss_pred             HHHHHHhcCCCCeEEEee
Confidence            788888999999999854

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=7.4e-08  Score=72.13  Aligned_cols=85  Identities=15%  Similarity=0.181  Sum_probs=65.6

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------CcccHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------KDNYCN   81 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------~~~~~~   81 (157)
                      +|++....+|+++|.++ ++..|+++.+.++..++++++++++.+.-  +     +.++||+|+....      ......
T Consensus        55 ~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~--~-----~~~~~D~i~se~~~~~~~~e~~~~~  126 (328)
T d1g6q1_          55 FAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH--L-----PFPKVDIIISEWMGYFLLYESMMDT  126 (328)
T ss_dssp             HHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC--C-----SSSCEEEEEECCCBTTBSTTCCHHH
T ss_pred             HHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc--C-----cccceeEEEEEecceeeccchhHHH
Confidence            34444567999999996 77899999999999999999999998752  1     2578999998542      123456


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      ++....++|+|||+++.+.
T Consensus       127 ~~~a~~r~LkpgG~iiP~~  145 (328)
T d1g6q1_         127 VLYARDHYLVEGGLIFPDK  145 (328)
T ss_dssp             HHHHHHHHEEEEEEEESCE
T ss_pred             HHHHHHhccCCCeEEEeee
Confidence            6777789999999997543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.57  E-value=1.1e-08  Score=73.36  Aligned_cols=90  Identities=17%  Similarity=0.186  Sum_probs=62.6

Q ss_pred             cccHHHHHh----hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMT----GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~----~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |-||++++.    ..++++|+++|+++........      ..++++++.||..+  .+..+.     ...+|+||+|+.
T Consensus        92 GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs~~~~~~~~l~-----~~~~dlIfID~~  160 (232)
T d2bm8a1          92 GGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLR-----EMAHPLIFIDNA  160 (232)
T ss_dssp             SHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGS-----SSCSSEEEEESS
T ss_pred             chHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeecccccHHHHHHHH-----hcCCCEEEEcCC
Confidence            678888765    2368999999999876543221      23589999999753  333332     456999999988


Q ss_pred             CcccHHHHHH-HHhcccCCeEEEEeccc
Q 031568           76 KDNYCNYHER-LMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        76 ~~~~~~~~~~-~~~~L~~gG~iv~~~~~  102 (157)
                      +.......+. ..++|++||++|+++..
T Consensus       161 H~~~~v~~~~~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         161 HANTFNIMKWAVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             CSSHHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred             cchHHHHHHHHHhcccCcCCEEEEEcCC
Confidence            6544333332 34799999999998764

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=7.5e-08  Score=69.65  Aligned_cols=69  Identities=13%  Similarity=0.188  Sum_probs=53.3

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH-HhhcCCCCCceeEEEEcCC
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~-~~~~~~~~~~fD~I~iD~~   75 (157)
                      .+++++..|+.+++++|+++++++.|++|++.+++.+++.+++.+....+.. +..  ...++||+|+++++
T Consensus        76 ~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~ivsNPP  145 (250)
T d2h00a1          76 YPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESEIIYDFCMCNPP  145 (250)
T ss_dssp             HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCSCCBSEEEECCC
T ss_pred             HHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh--cccCceeEEEecCc
Confidence            3446667789999999999999999999999999999999998776543311 110  12457999999874

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.54  E-value=1.4e-07  Score=66.67  Aligned_cols=73  Identities=16%  Similarity=0.175  Sum_probs=57.6

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHH-hc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLM-KL   89 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~-~~   89 (157)
                      +.+|++||+++++++.|+++.     .++++++.+++.+..        .+++||+|++...   .++....+..+. ++
T Consensus        42 g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~--------~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~  108 (225)
T d2p7ia1          42 FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQ--------LPRRYDNIVLTHVLEHIDDPVALLKRINDDW  108 (225)
T ss_dssp             CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCC--------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTT
T ss_pred             CCeEEEEeCcHHHhhhhhccc-----ccccccccccccccc--------cccccccccccceeEecCCHHHHHHHHHHHh
Confidence            568999999999999998764     247999999987642        2578999998653   234566778877 78


Q ss_pred             ccCCeEEEEe
Q 031568           90 LKVGGIAVYD   99 (157)
Q Consensus        90 L~~gG~iv~~   99 (157)
                      |+|||.+++.
T Consensus       109 Lk~gG~l~i~  118 (225)
T d2p7ia1         109 LAEGGRLFLV  118 (225)
T ss_dssp             EEEEEEEEEE
T ss_pred             cCCCceEEEE
Confidence            9999999985

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=1.6e-07  Score=70.88  Aligned_cols=90  Identities=13%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.=|+.|+.  ...+|+++|.++++++.|++|++.+|+. +++++.+++.+.+.....   ...+||+|++|++.....+
T Consensus       224 G~fsl~La~--~~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~~~~~~~~~~~~~---~~~~~d~vilDPPR~G~~~  297 (358)
T d1uwva2         224 GNFTLPLAT--QAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPW---AKNGFDKVLLDPARAGAAG  297 (358)
T ss_dssp             TTTHHHHHT--TSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGG---GTTCCSEEEECCCTTCCHH
T ss_pred             cccchhccc--cccEEEeccCcHHHHHHHHHhHHhcccc-cceeeecchhhhhhhhhh---hhccCceEEeCCCCccHHH
Confidence            333444443  5789999999999999999999999996 899999999886643321   1467999999999887777


Q ss_pred             HHHHHHhcccCCeEEEE
Q 031568           82 YHERLMKLLKVGGIAVY   98 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~   98 (157)
                      .++.+.+ ++|.-++.+
T Consensus       298 ~~~~l~~-~~~~~ivYV  313 (358)
T d1uwva2         298 VMQQIIK-LEPIRIVYV  313 (358)
T ss_dssp             HHHHHHH-HCCSEEEEE
T ss_pred             HHHHHHH-cCCCEEEEE
Confidence            6766655 355554433

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.6e-07  Score=70.43  Aligned_cols=92  Identities=10%  Similarity=0.022  Sum_probs=65.7

Q ss_pred             HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc-------CCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-
Q 031568            5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKA-------GVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-   75 (157)
Q Consensus         5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-------~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-   75 (157)
                      +..+|+..+..++++||+++.+++.|+++.++.       |.. .++++++||+.+. +...    .....|+||+... 
T Consensus       166 ~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~-~~~~----~~~~advi~~~~~~  240 (328)
T d1nw3a_         166 VLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE-EWRE----RIANTSVIFVNNFA  240 (328)
T ss_dssp             HHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH-HHHH----HHHHCSEEEECCTT
T ss_pred             HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc-cccc----ccCcceEEEEccee
Confidence            334555667789999999999999999887653       332 4799999999764 2110    0124688998653 


Q ss_pred             -CcccHHHHHHHHhcccCCeEEEEecc
Q 031568           76 -KDNYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        76 -~~~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                       .+.....+.++.+.|||||.||+-..
T Consensus       241 f~~~~~~~l~e~~r~LKpGg~iv~~~~  267 (328)
T d1nw3a_         241 FGPEVDHQLKERFANMKEGGRIVSSKP  267 (328)
T ss_dssp             TCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             cchHHHHHHHHHHHhCCCCcEEEEecc
Confidence             23345677888899999999998543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.7e-07  Score=69.49  Aligned_cols=89  Identities=16%  Similarity=0.126  Sum_probs=63.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |+-++ +|++....+|+++|.++.+. .++++....+..++++++++|+.+.-.       +.++||+|+.+...     
T Consensus        47 G~lsl-~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~-------~~~~~D~Ivse~~~~~~~~  117 (311)
T d2fyta1          47 GILSM-FAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHL-------PVEKVDVIISEWMGYFLLF  117 (311)
T ss_dssp             SHHHH-HHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCC-------SCSCEEEEEECCCBTTBTT
T ss_pred             CHHHH-HHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcC-------ccccceEEEEeeeeeeccc
Confidence            44333 33344457999999999875 567777788888899999999987521       25789999986421     


Q ss_pred             -cccHHHHHHHHhcccCCeEEEEe
Q 031568           77 -DNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        77 -~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                       .....++....++|+|||.++..
T Consensus       118 e~~~~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1         118 ESMLDSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             TCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccccHHHHHHHHhcCCCCcEEecc
Confidence             12345566667899999999854

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.6e-06  Score=62.89  Aligned_cols=85  Identities=7%  Similarity=0.037  Sum_probs=61.5

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCc--EEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHK--INFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~--i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~   88 (157)
                      ..++++||+++.+++.|++.++....-.+  +.+...++.++....... ...++||+|++-..   .+.....++.+.+
T Consensus        70 ~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~  148 (280)
T d1jqea_          70 CINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK-KELQKWDFIHMIQMLYYVKDIPATLKFFHS  148 (280)
T ss_dssp             EEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS-SSCCCEEEEEEESCGGGCSCHHHHHHHHHH
T ss_pred             ceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc-CCCCceeEEEEccceecCCCHHHHHHHHHh
Confidence            45789999999999999999876543334  456777777654432110 13578999998542   2356788999999


Q ss_pred             cccCCeEEEEe
Q 031568           89 LLKVGGIAVYD   99 (157)
Q Consensus        89 ~L~~gG~iv~~   99 (157)
                      +|+|||.+++.
T Consensus       149 ~LkpgG~l~i~  159 (280)
T d1jqea_         149 LLGTNAKMLII  159 (280)
T ss_dssp             TEEEEEEEEEE
T ss_pred             hCCCCCEEEEE
Confidence            99999988774

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=1.9e-07  Score=65.01  Aligned_cols=71  Identities=18%  Similarity=0.251  Sum_probs=56.7

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHhcccC
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV   92 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~~L~~   92 (157)
                      ++++||+++.+++.|+++        +++++++|+.+. + +     ++++||+|++...   .+....+++.+.+.|+|
T Consensus        56 ~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l-~-~-----~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~p  120 (208)
T d1vlma_          56 IKIGVEPSERMAEIARKR--------GVFVLKGTAENL-P-L-----KDESFDFALMVTTICFVDDPERALKEAYRILKK  120 (208)
T ss_dssp             CCEEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-S-----CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEE
T ss_pred             eEEEEeCChhhccccccc--------cccccccccccc-c-c-----ccccccccccccccccccccccchhhhhhcCCC
Confidence            468999999999999872        588999999765 2 1     2578999998653   23567789999999999


Q ss_pred             CeEEEEecc
Q 031568           93 GGIAVYDNT  101 (157)
Q Consensus        93 gG~iv~~~~  101 (157)
                      ||.+++...
T Consensus       121 gG~l~i~~~  129 (208)
T d1vlma_         121 GGYLIVGIV  129 (208)
T ss_dssp             EEEEEEEEE
T ss_pred             CceEEEEec
Confidence            999988654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.32  E-value=7.6e-07  Score=62.14  Aligned_cols=54  Identities=7%  Similarity=0.118  Sum_probs=45.9

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      ..+..+|+++|+|+.+++.|++|++..+.  +.+++.+|+.++          .++||+||+|++.
T Consensus        66 ~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~----------~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          66 LLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF----------NSRVDIVIMNPPF  119 (201)
T ss_dssp             HTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC----------CCCCSEEEECCCC
T ss_pred             HcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhh----------CCcCcEEEEcCcc
Confidence            44557999999999999999999998875  588999998663          5689999999863

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=2e-06  Score=60.31  Aligned_cols=87  Identities=14%  Similarity=0.030  Sum_probs=75.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.-..+|-.+|+.+++.+|.+...+...++..++.++. +++++++.+.+..+        ..+||+|..-+-. ....
T Consensus        77 G~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~--------~~~fD~V~sRA~~-~~~~  146 (207)
T d1jsxa_          77 GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS--------EPPFDGVISRAFA-SLND  146 (207)
T ss_dssp             TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC--------CSCEEEEECSCSS-SHHH
T ss_pred             CceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhcc--------ccccceehhhhhc-CHHH
Confidence            677778888899999999999999999999999999996 89999999987522        4589999887643 4678


Q ss_pred             HHHHHHhcccCCeEEEE
Q 031568           82 YHERLMKLLKVGGIAVY   98 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~   98 (157)
                      +++.+.++++++|.+++
T Consensus       147 ll~~~~~~l~~~g~~~~  163 (207)
T d1jsxa_         147 MVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             HHHHHTTSEEEEEEEEE
T ss_pred             HHHHHHHhcCCCcEEEE
Confidence            89999999999999987

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=7e-06  Score=62.89  Aligned_cols=95  Identities=9%  Similarity=0.098  Sum_probs=64.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC-------CC-CcEEE-EEccHHH--HHHHHhhcCCCCCceeEE
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG-------VD-HKINF-IESEALS--VLDQLLKYSENEGSFDYA   70 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-------~~-~~i~~-~~~d~~~--~l~~~~~~~~~~~~fD~I   70 (157)
                      |-.+..+|+..+.++|+|||+++.+++.|+++.++.+       .. ..+.+ ..++..+  .....      -...|+|
T Consensus       228 G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~------~~~adVV  301 (406)
T d1u2za_         228 GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL------IPQCDVI  301 (406)
T ss_dssp             SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH------GGGCSEE
T ss_pred             cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc------cccceEE
Confidence            4445556666677899999999999999999987643       21 22333 3444432  12211      2468999


Q ss_pred             EEcCC--CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568           71 FVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        71 ~iD~~--~~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      +++..  .+.....+.++.+.|||||.||+...+
T Consensus       302 ~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~  335 (406)
T d1u2za_         302 LVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSL  335 (406)
T ss_dssp             EECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             EEecccCchHHHHHHHHHHHhcCCCcEEEEeccc
Confidence            98753  234567788999999999999985543

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.11  E-value=9.4e-07  Score=63.60  Aligned_cols=56  Identities=9%  Similarity=0.143  Sum_probs=47.5

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCC--------CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGV--------DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~--------~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      +.+|++||.+|......+.+++++..        ..|++++++|+.+++.++      .++||+|++|+.
T Consensus       110 G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~------~~~~DvIYlDPM  173 (250)
T d2oyra1         110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------TPRPQVVYLDPM  173 (250)
T ss_dssp             TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC------SSCCSEEEECCC
T ss_pred             CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc------CCCCCEEEECCC
Confidence            78999999999999999998877532        237999999999998754      467999999984

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.00  E-value=3.3e-05  Score=54.99  Aligned_cols=91  Identities=15%  Similarity=0.114  Sum_probs=75.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.-+.+|-.+|+.+++.+|.+...+...+.-.++.|++ +++++++.+.++-....    ..++||+|..-+-. ....
T Consensus        82 GfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~----~~~~~D~v~sRAva-~l~~  155 (239)
T d1xdza_          82 GFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKD----VRESYDIVTARAVA-RLSV  155 (239)
T ss_dssp             CTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTT----TTTCEEEEEEECCS-CHHH
T ss_pred             chHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhcccccc----ccccceEEEEhhhh-CHHH
Confidence            566667777889999999999999999999999999996 89999999987632110    13579999987654 4678


Q ss_pred             HHHHHHhcccCCeEEEE
Q 031568           82 YHERLMKLLKVGGIAVY   98 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~   98 (157)
                      +++.+.+++++||.+++
T Consensus       156 ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         156 LSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             HHHHHGGGEEEEEEEEE
T ss_pred             HHHHHhhhcccCCEEEE
Confidence            89999999999999987

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.00  E-value=3e-05  Score=53.03  Aligned_cols=80  Identities=13%  Similarity=0.097  Sum_probs=59.3

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc------------cHH
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------------YCN   81 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~------------~~~   81 (157)
                      +++|+++|.+|++++.|++.     ..+++.+++++..+.-..+...  ..+++|.|++|.+...            ...
T Consensus        40 ~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~--~~~~vdgIl~DLGvSs~qld~~~re~~~~~~  112 (182)
T d1wg8a2          40 GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAAL--GVERVDGILADLGVSSFHLDDPSDELNALKE  112 (182)
T ss_dssp             TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHT--TCSCEEEEEEECSCCHHHHHCGGTHHHHHHH
T ss_pred             cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHc--CCCccCEEEEEccCCHHHhhcchHHHHHHHH
Confidence            68999999999999988763     2358999999887654433211  2467999999975432            233


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.....|++||.+++-.
T Consensus       113 ~L~~~~~~lk~gg~~~ii~  131 (182)
T d1wg8a2         113 FLEQAAEVLAPGGRLVVIA  131 (182)
T ss_dssp             HHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhhhCCCCeEEEEe
Confidence            5777788999999998754

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.2e-06  Score=60.20  Aligned_cols=86  Identities=23%  Similarity=0.061  Sum_probs=55.0

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH--------------Hh----------------hcCCC
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ--------------LL----------------KYSEN   63 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~--------------~~----------------~~~~~   63 (157)
                      ..+|+++|+++.+++.|++++.+.+..-.    .....+.+..              +.                .....
T Consensus        74 ~~~v~giD~S~~~i~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (257)
T d2a14a1          74 FQDITLSDFTDRNREELEKWLKKEPGAYD----WTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAV  149 (257)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHTCTTCCC----CHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCC
T ss_pred             cCcEEEecCCHHHHHHHHHHHhhccccch----hhhHHHHHHHhccccchHHHHHHHHhhhhhccccccccccccccccc
Confidence            45799999999999999999987654211    0000000000              00                00012


Q ss_pred             CCceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEEecccC
Q 031568           64 EGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        64 ~~~fD~I~iD~~-------~~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      .++||+|++...       ...+..+++.+.++|+|||.+++.++..
T Consensus       150 ~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~  196 (257)
T d2a14a1         150 LPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR  196 (257)
T ss_dssp             CCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             CCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence            468999997432       1245667899999999999999876543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.95  E-value=9.3e-06  Score=56.34  Aligned_cols=51  Identities=16%  Similarity=0.219  Sum_probs=42.0

Q ss_pred             hhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568           10 TGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus        10 ~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      +..+..+|+++|+++.+++.|++|++      +++++.+|+.+.          .++||+|++|++.
T Consensus        67 ~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l----------~~~fD~Vi~NPPf  117 (197)
T d1ne2a_          67 YLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI----------SGKYDTWIMNPPF  117 (197)
T ss_dssp             HHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC----------CCCEEEEEECCCC
T ss_pred             HHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhc----------CCcceEEEeCccc
Confidence            34456789999999999999999863      578999998653          5689999999863

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=5.9e-06  Score=59.62  Aligned_cols=100  Identities=13%  Similarity=-0.003  Sum_probs=59.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCc-----------------------------EEEEEccHHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHK-----------------------------INFIESEALS   52 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~-----------------------------i~~~~~d~~~   52 (157)
                      |+.+++.+... ..+|+++|.++.+++.+++++.+.+..-.                             -.++..|..+
T Consensus        66 g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~  144 (263)
T d2g72a1          66 TVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQ  144 (263)
T ss_dssp             CCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTS
T ss_pred             CHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccC
Confidence            33343344333 45899999999999999998865432100                             0122223221


Q ss_pred             HHHHHhhcCCCCCceeEEEEcC-------CCcccHHHHHHHHhcccCCeEEEEecccC
Q 031568           53 VLDQLLKYSENEGSFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVYDNTLW  103 (157)
Q Consensus        53 ~l~~~~~~~~~~~~fD~I~iD~-------~~~~~~~~~~~~~~~L~~gG~iv~~~~~~  103 (157)
                      --+ +.......++||+|++-.       +...+...++.+.++|||||.++.-....
T Consensus       145 ~~~-~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~  201 (263)
T d2g72a1         145 PQP-LGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE  201 (263)
T ss_dssp             SST-TCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred             CCc-cccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccC
Confidence            000 000001135799998743       12346778888999999999999866543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.64  E-value=6.4e-05  Score=55.53  Aligned_cols=76  Identities=17%  Similarity=0.200  Sum_probs=58.8

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--------------
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------------   78 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--------------   78 (157)
                      +..+++++|+++.+++.|+.++...+.  ...+.++|.....        ...+||+|+.+++...              
T Consensus       145 ~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--------~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~  214 (328)
T d2f8la1         145 VDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL--------LVDPVDVVISDLPVGYYPDDENAKTFELCR  214 (328)
T ss_dssp             CEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC--------CCCCEEEEEEECCCSEESCHHHHTTSTTCC
T ss_pred             ccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccccc--------ccccccccccCCCCCCCccchhhhhcchhc
Confidence            466899999999999999999988765  4667888876532        2568999999986311              


Q ss_pred             -------cHHHHHHHHhcccCCeEEEE
Q 031568           79 -------YCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        79 -------~~~~~~~~~~~L~~gG~iv~   98 (157)
                             +.-+++.+.++|+|||.+++
T Consensus       215 ~~~~~~~~~~Fi~~~~~~Lk~~G~~~~  241 (328)
T d2f8la1         215 EEGHSFAHFLFIEQGMRYTKPGGYLFF  241 (328)
T ss_dssp             SSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccCcchHHHHHHHHHHHhcCCCCceEE
Confidence                   23468888999999997654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.63  E-value=7.5e-05  Score=50.26  Aligned_cols=87  Identities=16%  Similarity=0.199  Sum_probs=62.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.....+|+.+|.+++.++.+++    +|...-+.....|..+.+.++.     ++.||.||-...   ...
T Consensus        41 G~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~~~i~~~~~~~~~~i~~~t-----~gg~D~vid~~G---~~~  108 (174)
T d1f8fa2          41 GLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEIT-----DGGVNFALESTG---SPE  108 (174)
T ss_dssp             HHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-----TSCEEEEEECSC---CHH
T ss_pred             HhhhhhcccccccceeeeeccHHHHHHHHHH----cCCeEEEeCCCcCHHHHHHHHc-----CCCCcEEEEcCC---cHH
Confidence            5667777777677789999999999888876    3544223333345666665552     457999986554   356


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.++++|+|.++.-.
T Consensus       109 ~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2         109 ILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHhcccCceEEEEEe
Confidence            7888999999999998744

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.0002  Score=47.77  Aligned_cols=91  Identities=10%  Similarity=0.027  Sum_probs=60.0

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      +|+.++.++......+|+++|.+++.++.|++    .|.+..+..-..+..+....+...  ....+|+||--..   ..
T Consensus        38 iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~~~~~~~~~~~~~~~~~~~~~--~g~g~Dvvid~~G---~~  108 (171)
T d1pl8a2          38 IGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGADLVLQISKESPQEIARKVEGQ--LGCKPEVTIECTG---AE  108 (171)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSEEEECSSCCHHHHHHHHHHH--HTSCCSEEEECSC---CH
T ss_pred             cHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCccccccccccccccccccccc--CCCCceEEEeccC---Cc
Confidence            36677778877666699999999999988866    355422222223433333222110  1457999885443   35


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 031568           81 NYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ..++.+.+++++||.+++-.
T Consensus       109 ~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2         109 ASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             HHHHHHHHHSCTTCEEEECS
T ss_pred             hhHHHHHHHhcCCCEEEEEe
Confidence            67889999999999998854

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.44  E-value=0.00012  Score=49.42  Aligned_cols=88  Identities=16%  Similarity=0.085  Sum_probs=59.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.....+|+++|.+++..+.|++    .|.+.-+.....+..+.+.++.    ....+|+||-....   ..
T Consensus        40 Gl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~~~i~~~~~~~~~~v~~~t----~g~G~D~vid~~g~---~~  108 (174)
T d1jqba2          40 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGATDILNYKNGHIEDQVMKLT----NGKGVDRVIMAGGG---SE  108 (174)
T ss_dssp             HHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCSEEECGGGSCHHHHHHHHT----TTSCEEEEEECSSC---TT
T ss_pred             hhhhhhhhhcccccccccccchhhhHHHHHh----hCccccccccchhHHHHHHHHh----hccCcceEEEccCC---HH
Confidence            6677777776555689999999999888865    4543223333444555555442    23459998865442   34


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.++|+|.++.-.
T Consensus       109 ~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2         109 TLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             HHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHHHhcCCEEEEEe
Confidence            5788889999999999844

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.26  E-value=0.00012  Score=50.23  Aligned_cols=80  Identities=23%  Similarity=0.264  Sum_probs=49.2

Q ss_pred             CcEEEEEeCChhHHHHHHHHH------------------HHcCCCCc------------EEEEEccHHHHHHHHhhcCCC
Q 031568           14 ILQITAIDVNRETYEIGLPII------------------KKAGVDHK------------INFIESEALSVLDQLLKYSEN   63 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~------------------~~~~~~~~------------i~~~~~d~~~~l~~~~~~~~~   63 (157)
                      ..+|++.|+++.+++.|++..                  .+.+....            +++...+.....+      ..
T Consensus        56 ~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~  129 (193)
T d1af7a2          56 RWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQY------NV  129 (193)
T ss_dssp             SEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSC------CC
T ss_pred             ceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccceeehHHHHHHHHHHhhhhcccccc------CC
Confidence            468999999999999997422                  11111111            2222222221100      12


Q ss_pred             CCceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 031568           64 EGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        64 ~~~fD~I~iD~~-----~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      .++||+||+-.-     .+....+++.+.+.|+|||+|++.
T Consensus       130 ~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         130 PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             CCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            467999998542     223356788889999999999874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=0.00041  Score=46.69  Aligned_cols=91  Identities=12%  Similarity=0.096  Sum_probs=57.6

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.....+|+++|.+++..+.+++    .|.+.-+.....+..+..+...+. .....+|+||-....   +.
T Consensus        41 G~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~i~~~-~~~~g~Dvvid~vG~---~~  112 (182)
T d1vj0a2          41 GLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGADLTLNRRETSVEERRKAIMDI-THGRGADFILEATGD---SR  112 (182)
T ss_dssp             HHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHHHH-TTTSCEEEEEECSSC---TT
T ss_pred             chhheeccccccccccccccccccccccccc----ccceEEEeccccchHHHHHHHHHh-hCCCCceEEeecCCc---hh
Confidence            5666777777644599999999999988865    454322222334444443322110 123469998854432   34


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.+++||.++.-.
T Consensus       113 ~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2         113 ALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             HHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHHhcCCCEEEEEe
Confidence            5788889999999998643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.22  E-value=0.00046  Score=45.67  Aligned_cols=85  Identities=14%  Similarity=0.186  Sum_probs=56.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+++.. +.+|+++|.+++..+.+++    .|.+.-+.....|..+.+...      ...+|.++.+...   ..
T Consensus        40 G~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~~~------~~g~~~~i~~~~~---~~  105 (166)
T d1llua2          40 GHVAVQYARAM-GLHVAAIDIDDAKLELARK----LGASLTVNARQEDPVEAIQRD------IGGAHGVLVTAVS---NS  105 (166)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------HSSEEEEEECCSC---HH
T ss_pred             HHHHHHHHHHc-CCccceecchhhHHHhhhc----cCccccccccchhHHHHHHHh------hcCCccccccccc---ch
Confidence            66667777765 6899999999999887765    454322322333444444433      2346666655542   45


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.|+++|.++.-.
T Consensus       106 ~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         106 AFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             HHHHHHTTEEEEEEEEECC
T ss_pred             HHHHHHHHhcCCcEEEEEE
Confidence            6888999999999998743

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.19  E-value=0.00026  Score=47.13  Aligned_cols=88  Identities=18%  Similarity=0.081  Sum_probs=57.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.....+|+.+|.+++..+.+++    .|.+..+.....|..+.+.+..    ..+.||.||-...   -..
T Consensus        41 G~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~----~~~~~d~vid~~g---~~~  109 (170)
T d1jvba2          41 GTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGADYVINASMQDPLAEIRRIT----ESKGVDAVIDLNN---SEK  109 (170)
T ss_dssp             HHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TTSCEEEEEESCC---CHH
T ss_pred             eeeeeecccccccccccccccchhhHHHHHH----cCCceeeccCCcCHHHHHHHHh----hcccchhhhcccc---cch
Confidence            4556666666666899999999999888876    3543222222233444443332    2456998875443   456


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.++|||.++.-.
T Consensus       110 ~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2         110 TLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             HHTTGGGGEEEEEEEEECC
T ss_pred             HHHhhhhhcccCCEEEEec
Confidence            7788899999999998754

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.12  E-value=0.00072  Score=47.91  Aligned_cols=83  Identities=11%  Similarity=0.103  Sum_probs=59.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |.-...+++++|+.+++.+|. |+.+       +..+..+|++++.+|..+.          ....|++++-.-.     
T Consensus        93 G~~~~~l~~~~P~l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~~~----------~p~~D~~~l~~vLh~~~d  154 (244)
T d1fp1d2          93 GRNLELIISKYPLIKGINFDL-PQVI-------ENAPPLSGIEHVGGDMFAS----------VPQGDAMILKAVCHNWSD  154 (244)
T ss_dssp             SHHHHHHHHHCTTCEEEEEEC-HHHH-------TTCCCCTTEEEEECCTTTC----------CCCEEEEEEESSGGGSCH
T ss_pred             cHHHHHHHHHCCCCeEEEecc-hhhh-------hccCCCCCeEEecCCcccc----------cccceEEEEehhhhhCCH
Confidence            444556777899999999998 4443       3455567999999998753          2346999875422     


Q ss_pred             cccHHHHHHHHhcccCCeEEEEeccc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      +.-..+++.+.+.|+|||.+++.+..
T Consensus       155 e~~~~iL~~~~~aL~pgg~llI~e~v  180 (244)
T d1fp1d2         155 EKCIEFLSNCHKALSPNGKVIIVEFI  180 (244)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence            22346788999999999987775543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.09  E-value=0.00059  Score=46.70  Aligned_cols=92  Identities=14%  Similarity=0.052  Sum_probs=62.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----   77 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----   77 (157)
                      |+.++.+++.....+|+++|.+++.++.|+++    |.+.-+.-...|..+.+.++.    ....+|.+|-....+    
T Consensus        38 Gl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~~~~~~~~~~~~~~i~~~t----~g~g~D~vid~vG~~~~~~  109 (195)
T d1kola2          38 GLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFEIADLSLDTPLHEQIAALL----GEPEVDCAVDAVGFEARGH  109 (195)
T ss_dssp             HHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCEEEETTSSSCHHHHHHHHH----SSSCEEEEEECCCTTCBCS
T ss_pred             HHHHHHHHHhhcccceeeecccchhhHhhhhc----cccEEEeCCCcCHHHHHHHHh----CCCCcEEEEECccccccCC
Confidence            56677777777788999999999999888763    432111112445555555443    245699988543211    


Q ss_pred             --------ccHHHHHHHHhcccCCeEEEEecc
Q 031568           78 --------NYCNYHERLMKLLKVGGIAVYDNT  101 (157)
Q Consensus        78 --------~~~~~~~~~~~~L~~gG~iv~~~~  101 (157)
                              .....++.+.+.++|||.+++-.+
T Consensus       110 ~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2         110 GHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             STTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             cccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence                    134689999999999999998654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.08  E-value=0.0029  Score=41.73  Aligned_cols=88  Identities=10%  Similarity=0.089  Sum_probs=56.8

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE----ccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE----SEALSVLDQLLKYSENEGSFDYAFVDADK   76 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~----~d~~~~l~~~~~~~~~~~~fD~I~iD~~~   76 (157)
                      +|+.++.+++.. +++|+++|.+++..+.|++.    |..  ..+..    .+..+....+.+.  ....+|+||-... 
T Consensus        38 vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~~~~~~~~~~--~g~g~D~vid~~g-  107 (170)
T d1e3ja2          38 IGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRSA--IGDLPNVTIDCSG-  107 (170)
T ss_dssp             HHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHHH--SSSCCSEEEECSC-
T ss_pred             cchhhHhhHhhh-cccccccchHHHHHHHHHHc----CCc--EEEeccccccccchhhhhhhcc--cccCCceeeecCC-
Confidence            366677777664 67999999999999888773    332  22221    1222222222211  1456998875443 


Q ss_pred             cccHHHHHHHHhcccCCeEEEEec
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                        ....++.+.++++++|.++.-.
T Consensus       108 --~~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2         108 --NEKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             --CHHHHHHHHHHSCTTCEEEECS
T ss_pred             --ChHHHHHHHHHHhcCCceEEEe
Confidence              3567888999999999999854

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.07  E-value=0.00055  Score=45.66  Aligned_cols=87  Identities=14%  Similarity=0.087  Sum_probs=57.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+++.....+|+++|.+++..+.+++    .|.+.-+. ...|..+...+..    ....+|.||-...   ...
T Consensus        45 G~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~~~i~-~~~~~~~~~~~~~----~~~g~d~vid~~g---~~~  112 (172)
T d1h2ba2          45 GHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGADHVVD-ARRDPVKQVMELT----RGRGVNVAMDFVG---SQA  112 (172)
T ss_dssp             HHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCSEEEE-TTSCHHHHHHHHT----TTCCEEEEEESSC---CHH
T ss_pred             HHHHHHHHHhhcCcccccccchhHHHHHHhh----cccceeec-CcccHHHHHHHhh----CCCCceEEEEecC---cch
Confidence            5666677776667899999999998887775    34331121 1123333222221    2456999886654   355


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.++++|.++.-.
T Consensus       113 ~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         113 TVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             HHHHGGGGEEEEEEEEECC
T ss_pred             HHHHHHHHHhCCCEEEEEe
Confidence            6889999999999999743

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.06  E-value=0.00026  Score=49.78  Aligned_cols=51  Identities=16%  Similarity=0.241  Sum_probs=39.9

Q ss_pred             EEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----------c-------cHHHHHHHHhcccCCeEEEEe
Q 031568           44 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----------N-------YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        44 ~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----------~-------~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ++++||..+.++.+.     ++++|+|+.|++-.          .       +.++++++.+.|+|+|.+++.
T Consensus         6 ~i~~gDcle~l~~lp-----d~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVE-----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSC-----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCc-----CCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            479999999999873     78999999998521          1       224567788999999988753

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.04  E-value=0.00079  Score=44.36  Aligned_cols=86  Identities=19%  Similarity=0.253  Sum_probs=57.1

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      +|+.++.+++. .+.+|+.++.+++.++.+++    .|.+.-+.....|..+.+....      ..+|.++.+..   ..
T Consensus        39 iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~---~~  104 (168)
T d1rjwa2          39 LGHVAVQYAKA-MGLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEKV------GGVHAAVVTAV---SK  104 (168)
T ss_dssp             THHHHHHHHHH-TTCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHHH------SSEEEEEESSC---CH
T ss_pred             chhhhhHHHhc-CCCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhccccc------CCCceEEeecC---CH
Confidence            35556566665 46799999999999887765    4554222222345555555442      34566666654   35


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 031568           81 NYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        81 ~~~~~~~~~L~~gG~iv~~~  100 (157)
                      ..++.+.+.++++|.+++-.
T Consensus       105 ~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2         105 PAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             HHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHHHhccCCceEecc
Confidence            67889999999999999843

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.0016  Score=43.34  Aligned_cols=85  Identities=18%  Similarity=0.142  Sum_probs=56.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+++.. +.++++++.+++..+.+++    .|.+.-+.....|..+.+....    ....+|+|+-...    ..
T Consensus        42 G~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t----~~~g~d~v~d~~g----~~  108 (174)
T d1yb5a2          42 GLAACQIARAY-GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV----GEKGIDIIIEMLA----NV  108 (174)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH----CTTCEEEEEESCH----HH
T ss_pred             ccccccccccc-Ccccccccccccccccccc----cCcccccccccccHHHHhhhhh----ccCCceEEeeccc----HH
Confidence            34444555554 7899999999888776654    5665333333455656554443    2456998875432    35


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++.+.+.|+|+|.++.=
T Consensus       109 ~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         109 NLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHhccCCCCEEEEE
Confidence            688889999999999873

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.88  E-value=0.0012  Score=46.69  Aligned_cols=82  Identities=7%  Similarity=0.080  Sum_probs=58.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----   76 (157)
                      |..+..+++++|+.+++..|. |+.+       +..+..+|++++.+|..+.          ...+|++++-.-.     
T Consensus        92 G~~~~~l~~~~P~l~~~v~Dl-p~vi-------~~~~~~~rv~~~~gD~f~~----------~p~aD~~~l~~vLHdw~d  153 (244)
T d1fp2a2          92 GTTAKIICETFPKLKCIVFDR-PQVV-------ENLSGSNNLTYVGGDMFTS----------IPNADAVLLKYILHNWTD  153 (244)
T ss_dssp             SHHHHHHHHHCTTCEEEEEEC-HHHH-------TTCCCBTTEEEEECCTTTC----------CCCCSEEEEESCGGGSCH
T ss_pred             cHHHHHHHHhCCCCeEEEecC-HHHH-------HhCcccCceEEEecCcccC----------CCCCcEEEEEeecccCCh
Confidence            455566788999999999998 4443       3456678999999998752          2358999875422     


Q ss_pred             cccHHHHHHHHhcccCC---eEEEE-ecc
Q 031568           77 DNYCNYHERLMKLLKVG---GIAVY-DNT  101 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~g---G~iv~-~~~  101 (157)
                      +.-..+++.+.+.|+||   |.+++ +.+
T Consensus       154 ~~~~~iL~~~~~al~pgg~~~~lli~e~~  182 (244)
T d1fp2a2         154 KDCLRILKKCKEAVTNDGKRGKVTIIDMV  182 (244)
T ss_dssp             HHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             HHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence            22346788999999998   55544 444

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.86  E-value=0.00068  Score=48.14  Aligned_cols=53  Identities=15%  Similarity=0.186  Sum_probs=41.4

Q ss_pred             cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----------ccc----HHHHHHHHhcccCCeEEEEe
Q 031568           42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----------DNY----CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----------~~~----~~~~~~~~~~L~~gG~iv~~   99 (157)
                      +-.++.||..+.++.+.     ++++|+||.|++-          ..|    ..++.++.+.|+|+|.+++.
T Consensus         4 ~~~~~~~D~le~l~~l~-----d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKLP-----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             EEEEEECCHHHHHHTSC-----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEechHHHHHhhCc-----CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            34578899999999873     7899999999862          123    34566788999999999874

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.75  E-value=0.0026  Score=42.54  Aligned_cols=90  Identities=16%  Similarity=0.167  Sum_probs=54.7

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      +|++...+++.....+|+++|.+++.++.|++.    |.+.-+.....|. .+.+....    ....+|.++.....   
T Consensus        41 vGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA~~~in~~~~~~~~~~~~~~~----~g~G~d~vi~~~g~---  109 (176)
T d1d1ta2          41 VGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GATECISPKDSTKPISEVLSEM----TGNNVGYTFEVIGH---  109 (176)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHH----HTSCCCEEEECSCC---
T ss_pred             hhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CCcEEECccccchHHHHHHHHh----ccccceEEEEeCCc---
Confidence            366777777777678999999999999988874    3332222222321 22222221    14579999877652   


Q ss_pred             HHHHHHHHh-cccCCeEEEEecc
Q 031568           80 CNYHERLMK-LLKVGGIAVYDNT  101 (157)
Q Consensus        80 ~~~~~~~~~-~L~~gG~iv~~~~  101 (157)
                      ...++.... +++++|.++.-..
T Consensus       110 ~~~~~~a~~~~~~~~G~~v~vG~  132 (176)
T d1d1ta2         110 LETMIDALASCHMNYGTSVVVGV  132 (176)
T ss_dssp             HHHHHHHHTTSCTTTCEEEECSC
T ss_pred             hHHHHHHHHHhhcCCeEEEEEEc
Confidence            444455554 4455588887443

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.67  E-value=0.00095  Score=48.13  Aligned_cols=53  Identities=19%  Similarity=0.263  Sum_probs=41.8

Q ss_pred             cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------------c----cHHHHHHHHhcccCCeEEEEe
Q 031568           42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------------N----YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------------~----~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      .-.+++||..+.+..+.     ++++|+|++|++-.             .    ..+.+..+.++|+++|.+++.
T Consensus        12 ~~~l~~GD~le~l~~l~-----~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~   81 (320)
T d1booa_          12 NGSMYIGDSLELLESFP-----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   81 (320)
T ss_dssp             SEEEEESCHHHHGGGSC-----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEehhHHHHHhhCc-----cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence            45899999999998873     78999999998521             1    234577788999999999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.67  E-value=0.004  Score=41.58  Aligned_cols=87  Identities=21%  Similarity=0.214  Sum_probs=58.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc--HHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--ALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d--~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+++.....+|+.+|.+++..+.|++    .|...-+.....|  .........     .+.+|++|--..   .
T Consensus        41 Gl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~~-----~~G~d~vie~~G---~  108 (174)
T d1e3ia2          41 GLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT-----AGGVDYSLDCAG---T  108 (174)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH-----TSCBSEEEESSC---C
T ss_pred             HHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCCcccCCccchhhhhhhHhhhh-----cCCCcEEEEecc---c
Confidence            6777778887777799999999999877766    4543222222222  222333332     467999985543   4


Q ss_pred             HHHHHHHHhcccCC-eEEEEec
Q 031568           80 CNYHERLMKLLKVG-GIAVYDN  100 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~~~  100 (157)
                      ...++.+.+.+++| |.++.-.
T Consensus       109 ~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         109 AQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             HHHHHHHHHTBCTTTCEEEECC
T ss_pred             chHHHHHHHHhhcCCeEEEecC
Confidence            66788999999996 9998744

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.00052  Score=45.63  Aligned_cols=85  Identities=19%  Similarity=0.067  Sum_probs=52.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.+..+++. .+++|+++|.+++.++.|++    +|.+ .+ +...+-.++....      .+.||.|+..... ....
T Consensus        40 G~~a~q~ak~-~G~~vi~~~~~~~k~~~a~~----lGa~-~~-i~~~~~~~~~~~~------~~~~d~vi~~~~~-~~~~  105 (168)
T d1piwa2          40 GSMGTLISKA-MGAETYVISRSSRKREDAMK----MGAD-HY-IATLEEGDWGEKY------FDTFDLIVVCASS-LTDI  105 (168)
T ss_dssp             HHHHHHHHHH-HTCEEEEEESSSTTHHHHHH----HTCS-EE-EEGGGTSCHHHHS------CSCEEEEEECCSC-STTC
T ss_pred             chhHHHHhhh-ccccccccccchhHHHHhhc----cCCc-EE-eeccchHHHHHhh------hcccceEEEEecC-Cccc
Confidence            5555566655 47899999999999988766    4543 21 1112222333332      4679998854221 1122


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.++++|.++.-.
T Consensus       106 ~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         106 DFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             CTTTGGGGEEEEEEEEECC
T ss_pred             hHHHHHHHhhccceEEEec
Confidence            3566789999999998743

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.54  E-value=0.0049  Score=41.03  Aligned_cols=87  Identities=13%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc--HHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--ALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d--~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.+..+++.....+|+++|.+++.++.|++    .|...-+.....|  ..+.....     ..+.+|.||-...   .
T Consensus        40 Gl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~~~i~~~~~d~~~~~~~~~~-----~~~G~d~vid~~g---~  107 (174)
T d1p0fa2          40 GFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEK-----TNGGVDYAVECAG---R  107 (174)
T ss_dssp             HHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHH-----TTSCBSEEEECSC---C
T ss_pred             hHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCcEEEcCCCchhHHHHHHHHh-----cCCCCcEEEEcCC---C
Confidence            6677777777667899999999999988876    4554323323334  33333333     2457999997764   2


Q ss_pred             HHHHHHHHhcccC-CeEEEEec
Q 031568           80 CNYHERLMKLLKV-GGIAVYDN  100 (157)
Q Consensus        80 ~~~~~~~~~~L~~-gG~iv~~~  100 (157)
                      ...++.....+++ +|.+++-.
T Consensus       108 ~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2         108 IETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             HHHHHHHHHTBCTTTCEEEECC
T ss_pred             chHHHHHHHHHHHhcCceEEEE
Confidence            4455666666654 58887643

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.49  E-value=0.0022  Score=48.76  Aligned_cols=76  Identities=16%  Similarity=0.210  Sum_probs=58.9

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----------------
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----------------   77 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----------------   77 (157)
                      ..+.++|+++.++.+|+-|+...|.. +...+..+|..+..        ...+||+|+.+++..                
T Consensus       200 ~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~--------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~  271 (425)
T d2okca1         200 KALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE--------PSTLVDVILANPPFGTRPAGSVDINRPDFYV  271 (425)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC--------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSS
T ss_pred             hhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh--------cccccceEEecCCCCCCccccchhhhhhccc
Confidence            35899999999999999999887765 35678888887532        256899999987531                


Q ss_pred             ----ccHHHHHHHHhcccCCeEEEE
Q 031568           78 ----NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 ----~~~~~~~~~~~~L~~gG~iv~   98 (157)
                          .+..+++.+..+|++||.+++
T Consensus       272 ~~~~~~~~Fi~~~~~~Lk~~G~~~i  296 (425)
T d2okca1         272 ETKNNQLNFLQHMMLMLKTGGRAAV  296 (425)
T ss_dssp             CCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccHHHHHHHHHHHhcCCCCeEEE
Confidence                124578889999999997654

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=96.39  E-value=0.0061  Score=43.57  Aligned_cols=89  Identities=12%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             cHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---ccc
Q 031568            4 PTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNY   79 (157)
Q Consensus         4 st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~~   79 (157)
                      |..+.+. ..++-++..+|.+|+-.+..++|+..   ..+++++..|..+.+..+..   +.+.=-+|+||++-   ..|
T Consensus        93 SP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~---~~~~~v~~~DG~~~l~allP---P~~rRgLVLIDPpYE~k~ey  166 (271)
T d2oo3a1          93 SPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLP---PPEKRGLIFIDPSYERKEEY  166 (271)
T ss_dssp             HHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCS---CTTSCEEEEECCCCCSTTHH
T ss_pred             CHHHHHHhCCCCCceEEeecCHHHHHHHHHHhcc---CCCceEEcCchHHHHHhhCC---CCCCceEEEecCCcCCHHHH
Confidence            4444444 45899999999999999988877643   35899999999999887641   23456699999863   345


Q ss_pred             HHHHHHHHhccc--CCeEEEE
Q 031568           80 CNYHERLMKLLK--VGGIAVY   98 (157)
Q Consensus        80 ~~~~~~~~~~L~--~gG~iv~   98 (157)
                      ....+.+.+.++  +.|++++
T Consensus       167 ~~v~~~l~~a~kr~~~g~~~i  187 (271)
T d2oo3a1         167 KEIPYAIKNAYSKFSTGLYCV  187 (271)
T ss_dssp             HHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHHHHHHHHHHhCCCceEEE
Confidence            555444443333  4566554

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=96.18  E-value=0.039  Score=33.98  Aligned_cols=68  Identities=16%  Similarity=0.068  Sum_probs=50.7

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      |.+|.-+|=++...+..++.++..|+  ++.....+..+.+..+.     ..+||+|++|-..+.  -.+.++++.+
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~--~v~~~a~~~~~al~~~~-----~~~~dliilD~~mp~~~G~e~~~~ir~   70 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGY--EVAGEATNGREAVEKYK-----ELKPDIVTMDITMPEMNGIDAIKEIMK   70 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEECSCGGGCHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCC--ceEEEECCHHHHHHHHH-----hccCCEEEEecCCCCCCHHHHHHHHHH
Confidence            46899999999999999999999876  34334578888877664     457999999976543  3445555543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.95  E-value=0.012  Score=38.94  Aligned_cols=84  Identities=12%  Similarity=0.013  Sum_probs=54.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |..+..+|+. -+.+++++..+++..+.++    +.|.+.-+.....|..+.+.+..    ....||+||--..    .+
T Consensus        39 G~~~iqla~~-~g~~vi~~~~~~~~~~~l~----~~Ga~~vi~~~~~~~~~~v~~~t----~~~g~d~v~d~~g----~~  105 (183)
T d1pqwa_          39 GMAAVSIAKM-IGARIYTTAGSDAKREMLS----RLGVEYVGDSRSVDFADEILELT----DGYGVDVVLNSLA----GE  105 (183)
T ss_dssp             HHHHHHHHHH-HTCEEEEEESSHHHHHHHH----TTCCSEEEETTCSTHHHHHHHHT----TTCCEEEEEECCC----TH
T ss_pred             ccccchhhcc-ccccceeeecccccccccc----cccccccccCCccCHHHHHHHHh----CCCCEEEEEeccc----ch
Confidence            3344445554 4789998888887776655    45654223333445555555442    2457999995443    24


Q ss_pred             HHHHHHhcccCCeEEEE
Q 031568           82 YHERLMKLLKVGGIAVY   98 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~   98 (157)
                      .++.+.+.|+++|.++.
T Consensus       106 ~~~~~~~~l~~~G~~v~  122 (183)
T d1pqwa_         106 AIQRGVQILAPGGRFIE  122 (183)
T ss_dssp             HHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCEEEE
Confidence            67888999999999997

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.033  Score=39.85  Aligned_cols=75  Identities=11%  Similarity=0.057  Sum_probs=53.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.=|..|+..  +.+|++||+|+.+++..++.+......++++++.+|+.++-         ...++.|+.+-+..-.-.
T Consensus        33 G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~---------~~~~~~vV~NLPY~Iss~  101 (278)
T d1zq9a1          33 GNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD---------LPFFDTCVANLPYQISSP  101 (278)
T ss_dssp             STTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC---------CCCCSEEEEECCGGGHHH
T ss_pred             hHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh---------hhhhhhhhcchHHHHHHH
Confidence            5556666665  56999999999999999999877666678999999998751         234667777655333334


Q ss_pred             HHHHHH
Q 031568           82 YHERLM   87 (157)
Q Consensus        82 ~~~~~~   87 (157)
                      ++..+.
T Consensus       102 il~~~~  107 (278)
T d1zq9a1         102 FVFKLL  107 (278)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.012  Score=38.86  Aligned_cols=82  Identities=16%  Similarity=0.153  Sum_probs=54.0

Q ss_pred             HHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHH
Q 031568            6 KLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER   85 (157)
Q Consensus         6 ~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~   85 (157)
                      ..+|+. -+++|++++.+++..+.+++    .|.+.-+.....|..+.+.++.    ....+|+|+ |+..   .+.++.
T Consensus        46 iqlak~-~Ga~Vi~~~~s~~k~~~~~~----lGa~~vi~~~~~d~~~~v~~~t----~g~g~d~v~-d~~g---~~~~~~  112 (179)
T d1qora2          46 CQWAKA-LGAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEIT----GGKKVRVVY-DSVG---RDTWER  112 (179)
T ss_dssp             HHHHHH-HTCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TTCCEEEEE-ECSC---GGGHHH
T ss_pred             HHHHHH-hCCeEeecccchHHHHHHHh----cCCeEEEECCCCCHHHHHHHHh----CCCCeEEEE-eCcc---HHHHHH
Confidence            334444 47899999999999888765    4654333334456666665542    245689765 4432   234678


Q ss_pred             HHhcccCCeEEEEec
Q 031568           86 LMKLLKVGGIAVYDN  100 (157)
Q Consensus        86 ~~~~L~~gG~iv~~~  100 (157)
                      +...++++|.++.-.
T Consensus       113 ~~~~l~~~G~~v~~g  127 (179)
T d1qora2         113 SLDCLQRRGLMVSFG  127 (179)
T ss_dssp             HHHTEEEEEEEEECC
T ss_pred             HHHHHhcCCeeeecc
Confidence            889999999987743

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.75  E-value=0.098  Score=32.16  Aligned_cols=67  Identities=10%  Similarity=0.119  Sum_probs=50.4

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      +-+|..||=++...+..++.++..|.  .+. ...++.+.+..+.     ..+||+|++|-..+.  -.+.++.+..
T Consensus         1 nirILiVdDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlillD~~mp~~~g~~~~~~lr~   69 (122)
T d1kgsa2           1 NVRVLVVEDERDLADLITEALKKEMF--TVD-VCYDGEEGMYMAL-----NEPFDVVILDIMLPVHDGWEILKSMRE   69 (122)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EEcchHHHHHHHH-----hhCccccccccccccchhHHHHHHHHh
Confidence            35899999999999999999999887  354 5688888877664     468999999975443  2344555543

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.60  E-value=0.0099  Score=41.64  Aligned_cols=83  Identities=7%  Similarity=0.125  Sum_probs=56.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DK   76 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~   76 (157)
                      |.....+++++|+.+++.+|.-+ .+       +.....++++++.+|..+.+|          ..|.+++-.     +.
T Consensus        93 G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~~~~~r~~~~~~d~~~~~P----------~ad~~~l~~vlh~~~d  154 (243)
T d1kyza2          93 GAVINTIVSKYPTIKGINFDLPH-VI-------EDAPSYPGVEHVGGDMFVSIP----------KADAVFMKWICHDWSD  154 (243)
T ss_dssp             SHHHHHHHHHCTTSEEEEEECTT-TT-------TTCCCCTTEEEEECCTTTCCC----------CCSCEECSSSSTTSCH
T ss_pred             cHHHHHHHHHCCCCeEEEcccHH-hh-------hhcccCCceEEecccccccCC----------CcceEEEEEEeecCCH
Confidence            44556677899999999999854 32       334455799999999876322          245555422     11


Q ss_pred             cccHHHHHHHHhcccCCeEEEEeccc
Q 031568           77 DNYCNYHERLMKLLKVGGIAVYDNTL  102 (157)
Q Consensus        77 ~~~~~~~~~~~~~L~~gG~iv~~~~~  102 (157)
                      .....+++.+.+.|+|||.+++.+..
T Consensus       155 ~~~~~iL~~~~~al~pgg~~li~d~~  180 (243)
T d1kyza2         155 EHCLKFLKNCYEALPDNGKVIVAECI  180 (243)
T ss_dssp             HHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEEE
Confidence            23456889999999999977765443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.049  Score=36.29  Aligned_cols=83  Identities=17%  Similarity=0.121  Sum_probs=52.4

Q ss_pred             HHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHH--HHhhcCCCCCceeEEEEcCCCcc---
Q 031568            5 TKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD--QLLKYSENEGSFDYAFVDADKDN---   78 (157)
Q Consensus         5 t~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~--~~~~~~~~~~~fD~I~iD~~~~~---   78 (157)
                      +-++.. ..+.++++++|..|-.           .+ +.+.++.+|..+...  ..... ...+++|+|+.|.....   
T Consensus        37 ~q~~~~~~~~~~~v~~vDl~~~~-----------~i-~~~~~~~~d~~~~~~~~~~~~~-~~~~~~DlVlSD~ap~~sg~  103 (180)
T d1ej0a_          37 SQYVVTQIGGKGRIIACDLLPMD-----------PI-VGVDFLQGDFRDELVMKALLER-VGDSKVQVVMSDMAPNMSGT  103 (180)
T ss_dssp             HHHHHHHHCTTCEEEEEESSCCC-----------CC-TTEEEEESCTTSHHHHHHHHHH-HTTCCEEEEEECCCCCCCSC
T ss_pred             eEEEEeeccccceEEEeeccccc-----------cc-CCceEeecccccchhhhhhhhh-ccCcceeEEEecccchhccc
Confidence            334444 4467899999987631           23 468899999754321  11000 02467999999975321   


Q ss_pred             -----------cHHHHHHHHhcccCCeEEEEec
Q 031568           79 -----------YCNYHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        79 -----------~~~~~~~~~~~L~~gG~iv~~~  100 (157)
                                 ....+..+.+.|++||.+|+.-
T Consensus       104 ~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~  136 (180)
T d1ej0a_         104 PAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence                       1234555678999999999974

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.59  E-value=0.019  Score=38.93  Aligned_cols=69  Identities=17%  Similarity=0.316  Sum_probs=49.6

Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--------------
Q 031568           12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------   77 (157)
Q Consensus        12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--------------   77 (157)
                      .....++++|+++..+.+          ..+..++++|.....        ...+||+|+.+++..              
T Consensus        42 ~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~--------~~~~fd~ii~npP~~~~~~~~~~~~~~~~  103 (223)
T d2ih2a1          42 GTAYRFVGVEIDPKALDL----------PPWAEGILADFLLWE--------PGEAFDLILGNPPYGIVGEASKYPIHVFK  103 (223)
T ss_dssp             CSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGCC--------CSSCEEEEEECCCCCCBSCTTTCSBCCCH
T ss_pred             cccceEEeeecCHHHHhh----------cccceeeeeehhccc--------cccccceecccCccccccccccccchhhh
Confidence            356789999999876533          335678899887642        256899999886421              


Q ss_pred             ------------------ccHHHHHHHHhcccCCeEEEE
Q 031568           78 ------------------NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 ------------------~~~~~~~~~~~~L~~gG~iv~   98 (157)
                                        .+..+++.+.++|++||.+++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1         104 AVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             HHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence                              023456788899999999866

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.40  E-value=0.067  Score=35.51  Aligned_cols=86  Identities=12%  Similarity=0.058  Sum_probs=57.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |.....+|+......|+++..+++......   ...|.+.-+.....+..+.+.+..     +..+|+|| |+.   -.+
T Consensus        44 G~~aiQlak~~Ga~~vi~~~~~~e~~~~l~---~~~gad~vi~~~~~~~~~~~~~~~-----~~GvDvv~-D~v---Gg~  111 (187)
T d1vj1a2          44 GSLAGQIGHLLGCSRVVGICGTQEKCLFLT---SELGFDAAVNYKTGNVAEQLREAC-----PGGVDVYF-DNV---GGD  111 (187)
T ss_dssp             GGGHHHHHHHTTCSEEEEEESSHHHHHHHH---HHSCCSEEEETTSSCHHHHHHHHC-----TTCEEEEE-ESS---CHH
T ss_pred             hHHHHHHHHHcCCcceecccchHHHHhhhh---hcccceEEeeccchhHHHHHHHHh-----ccCceEEE-ecC---Cch
Confidence            555556776665567888777765544332   245655445555566777777653     45699997 543   145


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 031568           82 YHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~   99 (157)
                      .++...+.|+++|.++.-
T Consensus       112 ~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         112 ISNTVISQMNENSHIILC  129 (187)
T ss_dssp             HHHHHHTTEEEEEEEEEC
T ss_pred             hHHHHhhhccccccEEEe
Confidence            788899999999999874

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.35  E-value=0.053  Score=34.11  Aligned_cols=67  Identities=13%  Similarity=0.128  Sum_probs=50.6

Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568           12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM   87 (157)
Q Consensus        12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~   87 (157)
                      +.+.+|..||=++......++.++..|.  .+. ...++.+.+..+      ...||+|++|-..+.  -.+..+.+.
T Consensus         5 ~~g~rILvVDD~~~~~~~l~~~L~~~G~--~v~-~a~~g~eal~~l------~~~~dlillD~~mP~~dG~el~~~ir   73 (134)
T d1dcfa_           5 FTGLKVLVMDENGVSRMVTKGLLVHLGC--EVT-TVSSNEECLRVV------SHEHKVVFMDVCMPGVENYQIALRIH   73 (134)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHC------CTTCSEEEEECCSSTTTTTHHHHHHH
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHh------hcCCCeEEEEeccCCCchHHHHHHHH
Confidence            4578999999999999999999999987  354 567888888654      457999999975443  233445554

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.28  E-value=0.025  Score=37.05  Aligned_cols=85  Identities=16%  Similarity=0.164  Sum_probs=55.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEE--EccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~--~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |+.++.+++.....+|++++.+++..+.+++    +|.+.-+...  ..+..+.+....     .+.+|.||-...   .
T Consensus        41 G~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa~~~i~~~~~~~~~~~~~~~~~-----~~g~D~vid~~G---~  108 (176)
T d2fzwa2          41 GLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEMT-----DGGVDYSFECIG---N  108 (176)
T ss_dssp             HHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHHT-----TSCBSEEEECSC---C
T ss_pred             HHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCCcEEEeCCchhhHHHHHHHHHc-----CCCCcEeeecCC---C
Confidence            4556667776667899999999999887765    4543222221  123444444332     457999986543   3


Q ss_pred             HHHHHHHHhcccCCeEEEE
Q 031568           80 CNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        80 ~~~~~~~~~~L~~gG~iv~   98 (157)
                      ...++.+..++++||.+++
T Consensus       109 ~~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2         109 VKVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             HHHHHHHHHTBCTTTCEEE
T ss_pred             HHHHHHHHHhhcCCceeEE
Confidence            5567888899999877654

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.19  E-value=0.13  Score=31.40  Aligned_cols=76  Identities=12%  Similarity=0.048  Sum_probs=53.0

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~   92 (157)
                      .+|..||=++...+..+..++..|.  .+. ...++.+.+..+.     ..+||+|++|-..+.  -.+.+..+...-..
T Consensus         3 krILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlillD~~mp~~~G~~~~~~~r~~~~~   74 (121)
T d1mvoa_           3 KKILVVDDEESIVTLLQYNLERSGY--DVI-TASDGEEALKKAE-----TEKPDLIVLDVMLPKLDGIEVCKQLRQQKLM   74 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----cccccEEEecccccCCCCchhhhhhhccCCC
Confidence            4899999999999999999999987  343 5678888877664     457999999975443  23445554433222


Q ss_pred             CeEEEE
Q 031568           93 GGIAVY   98 (157)
Q Consensus        93 gG~iv~   98 (157)
                      -.++++
T Consensus        75 ~~ii~l   80 (121)
T d1mvoa_          75 FPILML   80 (121)
T ss_dssp             CCEEEE
T ss_pred             CEEEEE
Confidence            334443

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=95.19  E-value=0.13  Score=31.51  Aligned_cols=75  Identities=13%  Similarity=0.090  Sum_probs=53.1

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~   91 (157)
                      +.+|..||=++......++.++..|+  ++. ...+..+.+..+.     ..+||+|++|-..+.  -.++++.+.. ..
T Consensus         1 NkrILvVDD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~~~-----~~~~dlillD~~mP~~~G~el~~~lr~-~~   71 (119)
T d1peya_           1 NEKILIVDDQSGIRILLNEVFNKEGY--QTF-QAANGLQALDIVT-----KERPDLVLLDMKIPGMDGIEILKRMKV-ID   71 (119)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESCCTTCCHHHHHHHHHH-HC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCC--EEE-EeCCHHHHHHHHH-----hCCCCEEEEeccCCCCCHHHHHHHHHH-hC
Confidence            35899999999999999999999887  343 5678888777664     457999999975443  3455666543 33


Q ss_pred             CCeEEE
Q 031568           92 VGGIAV   97 (157)
Q Consensus        92 ~gG~iv   97 (157)
                      ++--++
T Consensus        72 ~~~pvi   77 (119)
T d1peya_          72 ENIRVI   77 (119)
T ss_dssp             TTCEEE
T ss_pred             CCCcEE
Confidence            443333

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.18  E-value=0.039  Score=36.44  Aligned_cols=81  Identities=12%  Similarity=0.080  Sum_probs=51.5

Q ss_pred             HHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHH
Q 031568            6 KLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER   85 (157)
Q Consensus         6 ~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~   85 (157)
                      ..+++. -+++|+++..+++..+.+++    .|.+.-+.....+..+......    ....+|+||-...    .+.++.
T Consensus        47 iqlak~-~Ga~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~~~----~~~Gvd~v~D~vG----~~~~~~  113 (182)
T d1v3va2          47 GQIAKL-KGCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKA----SPDGYDCYFDNVG----GEFLNT  113 (182)
T ss_dssp             HHHHHH-TTCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHH----CTTCEEEEEESSC----HHHHHH
T ss_pred             HHHHHc-cCCEEEEeCCCHHHHHHHHh----hhhhhhcccccccHHHHHHHHh----hcCCCceeEEecC----chhhhh
Confidence            334544 47899999999988766655    4544223223333334333222    2456999874322    457889


Q ss_pred             HHhcccCCeEEEEe
Q 031568           86 LMKLLKVGGIAVYD   99 (157)
Q Consensus        86 ~~~~L~~gG~iv~~   99 (157)
                      +.+.|+++|.++.-
T Consensus       114 ~~~~l~~~G~~v~~  127 (182)
T d1v3va2         114 VLSQMKDFGKIAIC  127 (182)
T ss_dssp             HGGGEEEEEEEEEC
T ss_pred             hhhhccCCCeEEee
Confidence            99999999999874

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.17  E-value=0.061  Score=35.21  Aligned_cols=77  Identities=19%  Similarity=0.196  Sum_probs=48.8

Q ss_pred             cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568            4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH   83 (157)
Q Consensus         4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~   83 (157)
                      ....+++. -+++|++++.+++..+.+++    .|.+. + +-..+..+....       ...+|+|| |+.-    +.+
T Consensus        43 ~aiqlak~-~G~~vi~~~~~~~~~~~~~~----lGa~~-~-i~~~~~~~~~~~-------~~g~D~v~-d~~G----~~~  103 (171)
T d1iz0a2          43 AAVQVARA-MGLRVLAAASRPEKLALPLA----LGAEE-A-ATYAEVPERAKA-------WGGLDLVL-EVRG----KEV  103 (171)
T ss_dssp             HHHHHHHH-TTCEEEEEESSGGGSHHHHH----TTCSE-E-EEGGGHHHHHHH-------TTSEEEEE-ECSC----TTH
T ss_pred             hhhhhhcc-cccccccccccccccccccc----cccce-e-eehhhhhhhhhc-------cccccccc-cccc----hhH
Confidence            34445555 47899999999988877654    56542 2 222333322221       45799886 4432    236


Q ss_pred             HHHHhcccCCeEEEEe
Q 031568           84 ERLMKLLKVGGIAVYD   99 (157)
Q Consensus        84 ~~~~~~L~~gG~iv~~   99 (157)
                      +.+.+.|+++|.++.-
T Consensus       104 ~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2         104 EESLGLLAHGGRLVYI  119 (171)
T ss_dssp             HHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHhcCCcEEEE
Confidence            7788999999999874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.17  E-value=0.054  Score=35.47  Aligned_cols=85  Identities=15%  Similarity=0.279  Sum_probs=53.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-cc-HHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SE-ALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d-~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |++.+.+++.....+|+++|.+++..+.++++    |...-+.... .+ ..+.....     ..+.+|.||-...   .
T Consensus        41 G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~-----~~~G~D~vid~~G---~  108 (176)
T d2jhfa2          41 GLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GATECVNPQDYKKPIQEVLTEM-----SNGGVDFSFEVIG---R  108 (176)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHH-----TTSCBSEEEECSC---C
T ss_pred             HHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CCeeEEecCCchhHHHHHHHHH-----hcCCCCEEEecCC---c
Confidence            45666777777788999999999999888664    4331111111 12 23333333     2467999886654   3


Q ss_pred             HHHHHHHHhcccCC-eEEEE
Q 031568           80 CNYHERLMKLLKVG-GIAVY   98 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~   98 (157)
                      ...++.+...++++ |.+++
T Consensus       109 ~~~~~~a~~~~~~~~g~~~~  128 (176)
T d2jhfa2         109 LDTMVTALSCCQEAYGVSVI  128 (176)
T ss_dssp             HHHHHHHHHHBCTTTCEEEE
T ss_pred             hhHHHHHHHHHhcCCcceEE
Confidence            55677777778776 56655

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=95.14  E-value=0.17  Score=31.23  Aligned_cols=75  Identities=13%  Similarity=0.087  Sum_probs=53.1

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccCC
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVG   93 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~g   93 (157)
                      +|..||=++...+..++.++..|.  .+. ...++.+.+..+.     ..+||+|++|-..+.  -.+.++.+...-..-
T Consensus         4 ~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~~~dliilD~~mp~~~G~~~~~~i~~~~~~~   75 (128)
T d1yioa2           4 TVFVVDDDMSVREGLRNLLRSAGF--EVE-TFDCASTFLEHRR-----PEQHGCLVLDMRMPGMSGIELQEQLTAISDGI   75 (128)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHCC-----TTSCEEEEEESCCSSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCC--Ccc-ccccHHHHHHHHH-----hcCCCEeehhhhcccchhHHHHHHHHhhCCCC
Confidence            899999999999999999999886  353 4568888887653     568999999975432  345566655433333


Q ss_pred             eEEEE
Q 031568           94 GIAVY   98 (157)
Q Consensus        94 G~iv~   98 (157)
                      -++++
T Consensus        76 ~ii~l   80 (128)
T d1yioa2          76 PIVFI   80 (128)
T ss_dssp             CEEEE
T ss_pred             eEEEE
Confidence            34433

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.13  E-value=0.051  Score=35.89  Aligned_cols=93  Identities=14%  Similarity=0.132  Sum_probs=60.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~   78 (157)
                      |++.+..|... +++|+.+|.+++.++..+..+.     .+++....+-....+.+       ...|+|+.-..   ++.
T Consensus        44 G~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~-------~~aDivI~aalipG~~a  110 (168)
T d1pjca1          44 GTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAV-------AEADLLIGAVLVPGRRA  110 (168)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHH-------HTCSEEEECCCCTTSSC
T ss_pred             HHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhh-------ccCcEEEEeeecCCccc
Confidence            44555555554 8999999999999988877553     25677777766554444       35899987542   221


Q ss_pred             cHHHHHHHHhcccCCeEEEEecccCCccc
Q 031568           79 YCNYHERLMKLLKVGGIAVYDNTLWGGTV  107 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~~~~~~~~~  107 (157)
                      ..-+-+...+.+|||.+||=-.+-..|.+
T Consensus       111 P~lIt~~mv~~Mk~GSVIVDvaidqGG~~  139 (168)
T d1pjca1         111 PILVPASLVEQMRTGSVIVDVAVDQGGCV  139 (168)
T ss_dssp             CCCBCHHHHTTSCTTCEEEETTCTTCCSB
T ss_pred             CeeecHHHHhhcCCCcEEEEeecCCCCcc
Confidence            12223566789999999875455445543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.11  E-value=0.033  Score=36.47  Aligned_cols=88  Identities=8%  Similarity=0.038  Sum_probs=57.7

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc----CCC--CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA----GVD--HKINFIESEALSVLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~----~~~--~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      ||.+.+..++. .+.+|+.+|.+++.++.+++.-...    +..  .....+..|..+.+          ...|+|++-.
T Consensus        12 ~G~~~A~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----------~~aD~iii~v   80 (184)
T d1bg6a2          12 GGHAFAAYLAL-KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----------KDADVILIVV   80 (184)
T ss_dssp             HHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----------TTCSEEEECS
T ss_pred             HHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----------cCCCEEEEEE
Confidence            45555555554 3679999999999888776543211    010  01123344555443          3589999977


Q ss_pred             CCcccHHHHHHHHhcccCCeEEEEe
Q 031568           75 DKDNYCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        75 ~~~~~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ........++++.++++++.+++.-
T Consensus        81 ~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          81 PAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             chhHHHHHHHHhhhccCCCCEEEEe
Confidence            6666788899999999999987753

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.035  Score=43.03  Aligned_cols=77  Identities=10%  Similarity=0.072  Sum_probs=54.6

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCc----EEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--------------
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHK----INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------   77 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~----i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--------------   77 (157)
                      .++++|+++.+..+|+-|+-..+....    -.+..++....-..      ...+||+|+.+++..              
T Consensus       208 ~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~------~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~  281 (524)
T d2ar0a1         208 AFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSAAGTNITRTFVHP  281 (524)
T ss_dssp             SEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH------TSCCEEEEEECCCCTTCSSCCCCSCCSSC
T ss_pred             hhhhhccCHHHHHHHHHHHHhhcccccccccchhhhhhhhhhccc------ccccceeEEecCCccccccccchhhhccc
Confidence            689999999999999999877665422    23455665433111      146899999998531              


Q ss_pred             ---ccHHHHHHHHhcccCCeEEEE
Q 031568           78 ---NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 ---~~~~~~~~~~~~L~~gG~iv~   98 (157)
                         ....+++.+++.|++||.+++
T Consensus       282 ~~~~~~~Fi~~~l~~Lk~gGr~ai  305 (524)
T d2ar0a1         282 TSNKQLCFMQHIIETLHPGGRAAV  305 (524)
T ss_dssp             CSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccHHHHHHHHHhccccCcEEE
Confidence               123478889999999998655

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.06  E-value=0.026  Score=36.82  Aligned_cols=71  Identities=14%  Similarity=0.154  Sum_probs=46.0

Q ss_pred             hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568           11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL   90 (157)
Q Consensus        11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L   90 (157)
                      .....+|+++|.+++..+.+++.    +.-   .....+..+..         ....|+|++..+.....+.++.+.+.+
T Consensus        23 ~g~~~~I~~~D~~~~~~~~a~~~----~~~---~~~~~~~~~~~---------~~~~dlIila~p~~~~~~vl~~l~~~~   86 (171)
T d2g5ca2          23 SGFKGKIYGYDINPESISKAVDL----GII---DEGTTSIAKVE---------DFSPDFVMLSSPVRTFREIAKKLSYIL   86 (171)
T ss_dssp             TTCCSEEEEECSCHHHHHHHHHT----TSC---SEEESCGGGGG---------GTCCSEEEECSCHHHHHHHHHHHHHHS
T ss_pred             cCCCeEEEEEECChHHHHHHHHh----hcc---hhhhhhhhhhh---------ccccccccccCCchhhhhhhhhhhccc
Confidence            44577999999999999887763    322   12222222210         235788888877666777777777788


Q ss_pred             cCCeEEE
Q 031568           91 KVGGIAV   97 (157)
Q Consensus        91 ~~gG~iv   97 (157)
                      +++.+++
T Consensus        87 ~~~~ii~   93 (171)
T d2g5ca2          87 SEDATVT   93 (171)
T ss_dssp             CTTCEEE
T ss_pred             ccccccc
Confidence            7776554

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.82  E-value=0.2  Score=31.36  Aligned_cols=65  Identities=12%  Similarity=0.131  Sum_probs=49.1

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK   88 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~   88 (157)
                      +|..||=++...+..+..++..|+  .+. ...++.+.+..+.     ...||+|++|-..+  .-.++++.+..
T Consensus         2 kILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~eAl~~l~-----~~~~dlvilD~~mp~~~G~e~~~~lr~   68 (137)
T d1ny5a1           2 NVLVIEDDKVFRGLLEEYLSMKGI--KVE-SAERGKEAYKLLS-----EKHFNVVLLDLLLPDVNGLEILKWIKE   68 (137)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred             EEEEEecCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHhh-----ccccccchHHHhhhhhhHHHHHHHHHH
Confidence            688999999999999999999887  354 4678888877664     46799999996433  23455666554

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.14  Score=35.87  Aligned_cols=93  Identities=15%  Similarity=0.063  Sum_probs=61.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |..++...++..+.+|+.++.+++..+.+.+.++..+.  ++.++.+|..+.      ...+.+.   .++.|+++.++.
T Consensus        16 G~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~---~g~iDiLVnNAG   90 (275)
T d1wmaa1          16 GLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE---YGGLDVLVNNAG   90 (275)
T ss_dssp             HHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH---HSSEEEEEECCC
T ss_pred             HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh---cCCcEEEEEcCC
Confidence            45555433333578999999999999999988887764  578899987542      2222221   368999998764


Q ss_pred             Cc-------c----c-----------HHHHHHHHhcccCCeEEEEe
Q 031568           76 KD-------N----Y-----------CNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        76 ~~-------~----~-----------~~~~~~~~~~L~~gG~iv~~   99 (157)
                      ..       .    +           ....+.+.++++++|.++.-
T Consensus        91 i~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          91 IAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             CCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            21       0    1           12234456788999988763

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=94.65  E-value=0.021  Score=39.86  Aligned_cols=47  Identities=11%  Similarity=0.109  Sum_probs=37.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   53 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   53 (157)
                      |.=|..|+..  +.+|++||+|+.+++.+++.+..   .++++++++|+.++
T Consensus        33 G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~---~~n~~i~~~D~l~~   79 (235)
T d1qama_          33 GHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDILQF   79 (235)
T ss_dssp             SHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGGGC
T ss_pred             hHHHHHHHhC--cCceEEEeeccchHHHHHHHhhc---ccchhhhhhhhhhc
Confidence            4456666654  57999999999999999886643   25899999999975

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=94.55  E-value=0.25  Score=30.15  Aligned_cols=77  Identities=6%  Similarity=0.118  Sum_probs=53.6

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~   92 (157)
                      .+|..||=++...+..++.++..|+  ++. ...+..+.+..+.+    ...||+|++|-..+.  -.+.++.+.+.-+.
T Consensus         3 ~rILvVdDd~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~----~~~~dliilD~~lp~~~G~el~~~ir~~~~~   75 (118)
T d2b4aa1           3 FRVTLVEDEPSHATLIQYHLNQLGA--EVT-VHPSGSAFFQHRSQ----LSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQ   75 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHTGGG----GGSCSEEEEETTCTTSCHHHHHHHHTTSSSC
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCC--CeE-EECCHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence            5899999999999999999999886  344 44577777665531    346999999975443  34566666544333


Q ss_pred             CeEEEE
Q 031568           93 GGIAVY   98 (157)
Q Consensus        93 gG~iv~   98 (157)
                      -.++++
T Consensus        76 ~pii~l   81 (118)
T d2b4aa1          76 PSVLIL   81 (118)
T ss_dssp             CEEEEE
T ss_pred             CcEEEE
Confidence            345554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.1  Score=33.83  Aligned_cols=82  Identities=15%  Similarity=0.150  Sum_probs=52.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN   81 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~   81 (157)
                      |+.++.+++.. +.+++.++.+++..+.+++    .|.+   .++...-.+....      ..+.+|.+|-......   
T Consensus        43 G~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~----lGad---~~i~~~~~~~~~~------~~~~~D~vid~~g~~~---  105 (168)
T d1uufa2          43 GHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAA------HLKSFDFILNTVAAPH---  105 (168)
T ss_dssp             HHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHT------TTTCEEEEEECCSSCC---
T ss_pred             HHHHHHHhhcc-cccchhhccchhHHHHHhc----cCCc---EEEECchhhHHHH------hcCCCceeeeeeecch---
Confidence            45555666664 7788899999998876654    4543   2232222222221      1457999987654322   


Q ss_pred             HHHHHHhcccCCeEEEEec
Q 031568           82 YHERLMKLLKVGGIAVYDN  100 (157)
Q Consensus        82 ~~~~~~~~L~~gG~iv~~~  100 (157)
                      .++.+.+.++++|.++.-.
T Consensus       106 ~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2         106 NLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             CHHHHHTTEEEEEEEEECC
T ss_pred             hHHHHHHHHhcCCEEEEec
Confidence            3567789999999999743

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.44  E-value=0.16  Score=31.57  Aligned_cols=78  Identities=12%  Similarity=0.239  Sum_probs=50.4

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~   92 (157)
                      .+|..+|=++...+..++.++..|.. .++. ..|+.+.+..+........+||+|++|-..+.  -.+..+.+.+...+
T Consensus         2 irVLvVDD~~~~~~~l~~~L~~~g~~-~v~~-a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~~~   79 (128)
T d2r25b1           2 VKILVVEDNHVNQEVIKRMLNLEGIE-NIEL-ACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGY   79 (128)
T ss_dssp             SCEEEECSCHHHHHHHHHHHHHTTCC-CEEE-ESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHcCCe-EEEE-EcChHHHHHHHHhhhhccCCCCEEEEEeCCCCCCHHHHHHHHHHccCC
Confidence            47899999999999999999999874 4553 45666655433210001467999999975443  24455555543333


Q ss_pred             Ce
Q 031568           93 GG   94 (157)
Q Consensus        93 gG   94 (157)
                      .-
T Consensus        80 ~~   81 (128)
T d2r25b1          80 TS   81 (128)
T ss_dssp             CS
T ss_pred             CC
Confidence            33

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.34  E-value=0.1  Score=33.90  Aligned_cols=85  Identities=18%  Similarity=0.246  Sum_probs=51.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc--HHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--ALSVLDQLLKYSENEGSFDYAFVDADKDNY   79 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d--~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~   79 (157)
                      |++++.+++.....+|+++|.+++..+.+++    .|.+.-|.....+  ..+......     ...+|.|+-...   .
T Consensus        41 g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~----~GAd~~in~~~~~~~~~~~~~~~~-----~~G~d~vid~~G---~  108 (175)
T d1cdoa2          41 GLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKMT-----NGGVDFSLECVG---N  108 (175)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHHH-----TSCBSEEEECSC---C
T ss_pred             cchHHHHHHHHhhchheeecchHHHHHHHHH----cCCcEEEcCCCcchhHHHHHHhhc-----cCCcceeeeecC---C
Confidence            4566667777778899999999999887765    5544222221221  223332221     457999986654   3


Q ss_pred             HHHHHHHHhcccCC-eEEEE
Q 031568           80 CNYHERLMKLLKVG-GIAVY   98 (157)
Q Consensus        80 ~~~~~~~~~~L~~g-G~iv~   98 (157)
                      ...+..+..+++++ |++++
T Consensus       109 ~~~~~~a~~~~~~g~~~~~~  128 (175)
T d1cdoa2         109 VGVMRNALESCLKGWGVSVL  128 (175)
T ss_dssp             HHHHHHHHHTBCTTTCEEEE
T ss_pred             HHHHHHHHHHhhCCCcceeE
Confidence            44566777766665 55554

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.28  E-value=0.29  Score=29.89  Aligned_cols=66  Identities=11%  Similarity=0.099  Sum_probs=49.9

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL   89 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~   89 (157)
                      +|..||=++...+..++.++..|+  .+. ...+..+.+..+.     ..+||+|++|...+.  -.+..+.+.+.
T Consensus         3 kILiVDD~~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~~~-----~~~~dlvl~D~~mP~~~G~el~~~ir~~   70 (121)
T d1ys7a2           3 RVLVVDDDSDVLASLERGLRLSGF--EVA-TAVDGAEALRSAT-----ENRPDAIVLDINMPVLDGVSVVTALRAM   70 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEEeeccCcccHHHHHHHHhc
Confidence            799999999999999999999887  344 5678888877664     467999999975432  34556666543

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.11  Score=31.96  Aligned_cols=64  Identities=13%  Similarity=0.078  Sum_probs=47.9

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM   87 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~   87 (157)
                      +|..||=++...+..++.++..|+  ++. ...+..+.+..+.     ..+||+|++|...+.  -.++.+.+.
T Consensus         4 ~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlii~D~~mp~~~G~~~~~~~r   69 (121)
T d1xhfa1           4 HILIVEDELVTRNTLKSIFEAEGY--DVF-EATDGAEMHQILS-----EYDINLVIMDINLPGKNGLLLARELR   69 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEE-EECChHHHHHHHH-----hcCCCEEEeecccCCccCcHHHHHHH
Confidence            899999999999999999999886  344 5577888777664     468999999975432  234444443

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.20  E-value=0.095  Score=32.00  Aligned_cols=65  Identities=15%  Similarity=0.102  Sum_probs=49.0

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      +|..||=++...+..+..++..|+  .+. ...|..+.+..+.     ..+||+|++|...+.  -.+.++.+.+
T Consensus         2 rILiVdDd~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~~~-----~~~~dlillD~~mp~~~G~~~~~~i~~   68 (117)
T d2a9pa1           2 KILIVDDEKPISDIIKFNMTKEGY--EVV-TAFNGREALEQFE-----AEQPDIIILDLMLPEIDGLEVAKTIRK   68 (117)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEECSSCSSSCHHHHHHHHHT
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hcCCCEEEeccccCCCCccHHHHHHHh
Confidence            689999999999999999999887  354 5678888877664     467999999975433  2345555543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.08  E-value=0.064  Score=34.70  Aligned_cols=68  Identities=12%  Similarity=0.035  Sum_probs=46.6

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV   92 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~   92 (157)
                      .+-+|+++|.+++.++.+++    .+.-+   ....+. +.          -...|+||+..+.....+.++.+.+.+++
T Consensus        22 ~g~~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~-~~----------~~~~DiIilavp~~~~~~vl~~l~~~l~~   83 (165)
T d2f1ka2          22 RGHYLIGVSRQQSTCEKAVE----RQLVD---EAGQDL-SL----------LQTAKIIFLCTPIQLILPTLEKLIPHLSP   83 (165)
T ss_dssp             TTCEEEEECSCHHHHHHHHH----TTSCS---EEESCG-GG----------GTTCSEEEECSCHHHHHHHHHHHGGGSCT
T ss_pred             CCCEEEEEECCchHHHHHHH----hhccc---eeeeec-cc----------ccccccccccCcHhhhhhhhhhhhhhccc
Confidence            57899999999988877654    33321   122222 21          23689999877666677888888888888


Q ss_pred             CeEEEE
Q 031568           93 GGIAVY   98 (157)
Q Consensus        93 gG~iv~   98 (157)
                      +.+++-
T Consensus        84 ~~iv~~   89 (165)
T d2f1ka2          84 TAIVTD   89 (165)
T ss_dssp             TCEEEE
T ss_pred             ccceee
Confidence            887753

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=94.05  E-value=0.15  Score=32.24  Aligned_cols=76  Identities=14%  Similarity=0.207  Sum_probs=52.0

Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcC--CCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568           12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS--ENEGSFDYAFVDADKDN--YCNYHERLM   87 (157)
Q Consensus        12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~--~~~~~fD~I~iD~~~~~--~~~~~~~~~   87 (157)
                      +|..+|..||=++......++.+++.|...++ ....|+.+.+..+....  .....||+|++|-..+.  -.+.++.+.
T Consensus         1 nppk~ILiVdD~~~~~~~l~~~L~~~g~~~~v-~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~mP~~~G~el~~~ir   79 (144)
T d1i3ca_           1 NPPKVILLVEDSKADSRLVQEVLKTSTIDHEL-IILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIK   79 (144)
T ss_dssp             CCCEEEEEECCCHHHHHHHHHHHHSCCSCEEE-EEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHcCCCeEE-EEECCHHHHHHHHHhchhhhccCCCCEEEEECccccccchHHHHHHH
Confidence            47789999999999999999999988875333 24567777776553110  01236999999975443  344556554


Q ss_pred             h
Q 031568           88 K   88 (157)
Q Consensus        88 ~   88 (157)
                      .
T Consensus        80 ~   80 (144)
T d1i3ca_          80 Q   80 (144)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=94.05  E-value=0.08  Score=32.57  Aligned_cols=66  Identities=15%  Similarity=0.133  Sum_probs=49.2

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      .+|..||=++...+..++.++..|.  ++. ...|+.+.+..+.     ..+||+|++|-..+.  -.+..+.+..
T Consensus         2 krILiVDD~~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~~~dlil~D~~mp~~dG~el~~~ir~   69 (123)
T d1mb3a_           2 KKVLIVEDNELNMKLFHDLLEAQGY--ETL-QTREGLSALSIAR-----ENKPDLILMDIQLPEISGLEVTKWLKE   69 (123)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHH-----HHCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEEeccCCCcHHHHHHHHHh
Confidence            4799999999999999999999887  343 4678888777664     357999999975432  3445555543

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=94.01  E-value=0.021  Score=40.29  Aligned_cols=81  Identities=9%  Similarity=-0.003  Sum_probs=58.1

Q ss_pred             CcEEEEEeCChhHHHHH---HHHHHHcCCCCcEEEEEccHHHHHH--HHhhcCCCCCceeEEEEcCCCc-----------
Q 031568           14 ILQITAIDVNRETYEIG---LPIIKKAGVDHKINFIESEALSVLD--QLLKYSENEGSFDYAFVDADKD-----------   77 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a---~~~~~~~~~~~~i~~~~~d~~~~l~--~~~~~~~~~~~fD~I~iD~~~~-----------   77 (157)
                      ..++++.|+++++++.|   ++|++..|+.+.|++...|+.+..+  ...    ....+++|+++++..           
T Consensus       114 ~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~----~~~~~GlIVtNPPYGERl~~~~~~~~  189 (249)
T d1o9ga_         114 QSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVL----AGSAPDVVLTDLPYGERTHWEGQVPG  189 (249)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH----TTCCCSEEEEECCGGGSSSSSSCCCH
T ss_pred             cCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhcc----CCCCCCEEEeCCCccccccccccchH
Confidence            35678999999999998   5799999999899999999865322  221    245689999998421           


Q ss_pred             -ccHHHHHHHHhcccCCeEEEE
Q 031568           78 -NYCNYHERLMKLLKVGGIAVY   98 (157)
Q Consensus        78 -~~~~~~~~~~~~L~~gG~iv~   98 (157)
                       .|.+++..+.+.+....++++
T Consensus       190 ~~~~~~~~~l~~~~p~~s~~~i  211 (249)
T d1o9ga_         190 QPVAGLLRSLASALPAHAVIAV  211 (249)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHHHccCCCCcEEEE
Confidence             244555566677766655555

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=93.97  E-value=0.35  Score=29.59  Aligned_cols=76  Identities=11%  Similarity=0.034  Sum_probs=55.1

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~   91 (157)
                      +.+|.-||=++...+..++.++..|.  ++. ...++.+.+..+.     ..+||+|++|-..+  +-.++++.+.+ ..
T Consensus         3 ~~~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~~~dlvi~D~~mp~~~G~e~~~~lr~-~~   73 (123)
T d1dbwa_           3 DYTVHIVDDEEPVRKSLAFMLTMNGF--AVK-MHQSAEAFLAFAP-----DVRNGVLVTDLRMPDMSGVELLRNLGD-LK   73 (123)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHGG-----GCCSEEEEEECCSTTSCHHHHHHHHHH-TT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----hcCCcEEEEeccCccccchHHHHHHHh-cC
Confidence            56899999999999999999999887  454 4577888777654     46799999997543  23556666654 34


Q ss_pred             CCeEEEE
Q 031568           92 VGGIAVY   98 (157)
Q Consensus        92 ~gG~iv~   98 (157)
                      |...+++
T Consensus        74 ~~~~iI~   80 (123)
T d1dbwa_          74 INIPSIV   80 (123)
T ss_dssp             CCCCEEE
T ss_pred             CCCeEEE
Confidence            4444443

>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.19  Score=31.00  Aligned_cols=69  Identities=16%  Similarity=0.273  Sum_probs=51.3

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      .+.+|..||-++...+..++.++..|.. .|. ...++.+.+..+.     ..+||+|++|-..+.  -.++++.+..
T Consensus         3 k~lriLvVDD~~~~r~~i~~~L~~~g~~-~v~-~a~~g~~a~~~~~-----~~~~dlii~D~~mP~~dG~el~~~ir~   73 (128)
T d1jbea_           3 KELKFLVVDDFSTMRRIVRNLLKELGFN-NVE-EAEDGVDALNKLQ-----AGGYGFVISDWNMPNMDGLELLKTIRA   73 (128)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHHHHTTCC-CEE-EESSHHHHHHHHT-----TCCCCEEEEESCCSSSCHHHHHHHHHC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCc-EEE-EecCchHHHHHHh-----cCCCCEEEEecccccCCHHHHHHHHHh
Confidence            4678999999999999999999998874 343 4577877776653     568999999975443  3455555543

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.85  E-value=0.36  Score=29.44  Aligned_cols=76  Identities=11%  Similarity=-0.034  Sum_probs=54.4

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~   91 (157)
                      .++|..||=++......++.++..|+  ++. ...++.+.+..+.     ..+||+|++|-..+  .-.++++.+.+. .
T Consensus         3 k~~ILIVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~a~~~l~-----~~~~dlii~D~~mp~~~G~el~~~l~~~-~   73 (123)
T d1krwa_           3 RGIVWVVDDDSSIRWVLERALAGAGL--TCT-TFENGNEVLAALA-----SKTPDVLLSDIRMPGMDGLALLKQIKQR-H   73 (123)
T ss_dssp             CCEEEEESSSHHHHHHHHHHHHHTTC--EEE-EESSSHHHHHHHT-----TCCCSEEEECCSSSSSTTHHHHHHHHHH-S
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHH-----hCCCCEEEehhhcCCchHHHHHHHHHHh-C
Confidence            46899999999999999999999887  354 4677778777664     56899999997543  234556665543 3


Q ss_pred             CCeEEEE
Q 031568           92 VGGIAVY   98 (157)
Q Consensus        92 ~gG~iv~   98 (157)
                      |.--+++
T Consensus        74 ~~~piI~   80 (123)
T d1krwa_          74 PMLPVII   80 (123)
T ss_dssp             SSCCEEE
T ss_pred             CCCeEEE
Confidence            4433443

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=93.83  E-value=0.36  Score=29.32  Aligned_cols=66  Identities=18%  Similarity=0.038  Sum_probs=49.3

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL   89 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~   89 (157)
                      +|..||=++...+..++.++..|.  .+. ...++.+.+..+.     ...||+|++|-..+.  -.++++.+.+.
T Consensus         2 rILvVDDd~~~~~~l~~~L~~~G~--~v~-~a~~g~eal~~l~-----~~~~dliilD~~mP~~~G~e~~~~i~~~   69 (119)
T d2pl1a1           2 RVLVVEDNALLRHHLKVQIQDAGH--QVD-DAEDAKEADYYLN-----EHIPDIAIVDLGLPDEDGLSLIRRWRSN   69 (119)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHHT
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hcccceeehhccCCCchhHHHHHHHHhc
Confidence            688999999999999999999886  343 5677777777664     467999999975443  34556655543

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=93.81  E-value=0.12  Score=32.49  Aligned_cols=66  Identities=9%  Similarity=-0.009  Sum_probs=49.7

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM   87 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~   87 (157)
                      .++|..||=++...+..+..++..|+  .+ ....++.+.+..+.     ...||+|++|-..+.  -.+..+.+.
T Consensus         1 SarILiVDD~~~~~~~l~~~L~~~g~--~v-~~a~~~~eal~~~~-----~~~~dlil~D~~~p~~~G~~~~~~ir   68 (139)
T d1w25a1           1 SARILVVDDIEANVRLLEAKLTAEYY--EV-STAMDGPTALAMAA-----RDLPDIILLDVMMPGMDGFTVCRKLK   68 (139)
T ss_dssp             CCEEEEECSSTTHHHHHHHHHHHTTC--EE-EEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCC--EE-EEEccchhhhhhhh-----cccceeeeeeccccCCCchHHHHHhh
Confidence            36899999999999999999999887  34 36678888877664     457999999975443  234455444

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=93.71  E-value=0.12  Score=32.02  Aligned_cols=67  Identities=6%  Similarity=0.073  Sum_probs=49.3

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM   87 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~   87 (157)
                      ..+|..||=++......++.++..|.. .+. ...|+.+.+..+.     ..+||+|++|...+.  -.++.+.+.
T Consensus         6 ~~kILiVDD~~~~~~~l~~~L~~~g~~-~v~-~a~~~~~al~~l~-----~~~~dlii~D~~mP~~~G~el~~~lr   74 (129)
T d1p6qa_           6 KIKVLIVDDQVTSRLLLGDALQQLGFK-QIT-AAGDGEQGMKIMA-----QNPHHLVISDFNMPKMDGLGLLQAVR   74 (129)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHTTTCS-CEE-CCSSHHHHHHHHH-----TSCCSEEEECSSSCSSCHHHHHHHHT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCe-EEE-EECCHHHHHHHHH-----hCCCCeEEeeeecCCCChHHHHHHHH
Confidence            558999999999999999999998874 232 3457777776664     568999999975543  344555554

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.70  E-value=0.37  Score=29.40  Aligned_cols=69  Identities=17%  Similarity=0.096  Sum_probs=49.0

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEE--EEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcc
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLL   90 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L   90 (157)
                      -+|.-+|=++...+..++.++..+.   .+.  ...|..+.+..+.     ...||+|++|-..+.  -.++++.+.+..
T Consensus         2 irILivDD~~~~~~~l~~~L~~~~~---~~~v~~a~~g~~al~~~~-----~~~~dlillD~~mP~~dG~e~~~~ir~~~   73 (123)
T d1dz3a_           2 IKVCIADDNRELVSLLDEYISSQPD---MEVIGTAYNGQDCLQMLE-----EKRPDILLLDIIMPHLDGLAVLERIRAGF   73 (123)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTSTT---EEEEEEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred             cEEEEEeCCHHHHHHHHHHHHhCCC---cEEEEEECCHHHHHHHHH-----hcCCCEEEEcCCCCCCCHHHHHHHHHhcC
Confidence            4789999999999999999987652   332  3567777776654     457999999975543  345666665443


Q ss_pred             c
Q 031568           91 K   91 (157)
Q Consensus        91 ~   91 (157)
                      .
T Consensus        74 ~   74 (123)
T d1dz3a_          74 E   74 (123)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.39  Score=29.78  Aligned_cols=69  Identities=13%  Similarity=0.196  Sum_probs=50.6

Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568           12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK   88 (157)
Q Consensus        12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~   88 (157)
                      +.+.+|..||=++......++.++..|.  ++. ...++.+.+..+.     ..+||+|++|...+  .-.++.+.+.+
T Consensus         6 ~~~~~ILiVDD~~~~~~~l~~~L~~~g~--~v~-~a~~g~ea~~~~~-----~~~~dlillD~~mP~~dG~el~~~ir~   76 (133)
T d2ayxa1           6 NDDMMILVVDDHPINRRLLADQLGSLGY--QCK-TANDGVDALNVLS-----KNHIDIVLSDVNMPNMDGYRLTQRIRQ   76 (133)
T ss_dssp             CCCCEEEEEESSHHHHHHHHHHHHHHTS--EEE-EECCSHHHHHHHH-----HSCCSEEEEEESSCSSCCHHHHHHHHH
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHcCC--EEE-EECcHHHHHHHHh-----ccCceEEEEeccCCCCCHHHHHHHHHH
Confidence            3577999999999999999999999987  343 4667777766554     46799999996433  23445555543

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.39  Score=29.14  Aligned_cols=66  Identities=8%  Similarity=0.047  Sum_probs=48.4

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      ..|..||=++...+..++.++..|.  ++. ...+..+.+..+.     ..+||+|++|-..+.  -.+..+.+.+
T Consensus         1 TnILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~l~-----~~~~dliilD~~mP~~~G~e~~~~ir~   68 (119)
T d1zh2a1           1 TNVLIVEDEQAIRRFLRTALEGDGM--RVF-EAETLQRGLLEAA-----TRKPDLIILDLGLPDGDGIEFIRDLRQ   68 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESEETTEEHHHHHHHHHT
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHH-----hcCCCEEEeccccCCCCCchHHHHHHh
Confidence            3688999999999999999998876  343 5577877777664     457999999974332  2445555544

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=93.58  E-value=0.46  Score=29.71  Aligned_cols=74  Identities=14%  Similarity=0.114  Sum_probs=53.0

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcccCC
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG   93 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~g   93 (157)
                      +|..||=++......+..++..|+  .+. ...++.+.+..+.     ..+||+|++|-..+  +-.++++.+.+. .|+
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~~~dlil~D~~mP~~~G~el~~~lr~~-~~~   72 (140)
T d1qkka_           2 SVFLIDDDRDLRKAMQQTLELAGF--TVS-SFASATEALAGLS-----ADFAGIVISDIRMPGMDGLALFRKILAL-DPD   72 (140)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHTCC-----TTCCSEEEEESCCSSSCHHHHHHHHHHH-CTT
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEE-EeCChHHHHHHHh-----ccCcchHHHhhccCCCCHHHHHHHHHHh-CCC
Confidence            588999999999999999999886  354 4478888877663     56899999997544  234566666543 344


Q ss_pred             e-EEEE
Q 031568           94 G-IAVY   98 (157)
Q Consensus        94 G-~iv~   98 (157)
                      - +|++
T Consensus        73 ~pvI~l   78 (140)
T d1qkka_          73 LPMILV   78 (140)
T ss_dssp             SCEEEE
T ss_pred             CcEEEE
Confidence            3 4443

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.19  Score=30.74  Aligned_cols=64  Identities=16%  Similarity=0.098  Sum_probs=48.4

Q ss_pred             EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568           16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM   87 (157)
Q Consensus        16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~   87 (157)
                      +|.-||=++...+..+..++..|+.  +. ...++.+.+..+.     ..+||+|++|-..+.  -.++.+.+.
T Consensus         2 kILiVDD~~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~-----~~~~dlil~D~~mp~~~G~~l~~~lr   67 (121)
T d1zesa1           2 RILVVEDEAPIREMVCFVLEQNGFQ--PV-EAEDYDSAVNQLN-----EPWPDLILLDWMLPGGSGIQFIKHLK   67 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EE-EECSHHHHHHHSS-----SSCCSEEEECSSCTTSCHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCCE--EE-EECChHHHHHHHH-----ccCCCEEEeecCCCCCCHHHHHHHHH
Confidence            7899999999999999999998873  43 4568888887663     568999999965432  344555554

>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Methylesterase CheB, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.24  E-value=0.52  Score=29.36  Aligned_cols=77  Identities=16%  Similarity=0.172  Sum_probs=52.2

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK   91 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~   91 (157)
                      .-+|..||=++...+..++.++..|.. .+-....|+.+.+..+.     ...||+|++|-..+  +-.++++.+.+. .
T Consensus         3 kirVLiVDD~~~~r~~l~~~L~~~g~~-~~v~~a~~g~~al~~~~-----~~~pDlvllDi~MP~~dG~e~~~~ir~~-~   75 (140)
T d1a2oa1           3 KIRVLSVDDSALMRQIMTEIINSHSDM-EMVATAPDPLVARDLIK-----KFNPDVLTLDVEMPRMDGLDFLEKLMRL-R   75 (140)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHH-----HHCCSEEEEECCCSSSCHHHHHHHHHHS-S
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhCCCe-EEEEEECCHHHHHHHHH-----hcCCCEEEEcCCCCCCCHHHHHHHHHHh-C
Confidence            458999999999999999999887632 12223567877776654     45799999997543  234556665544 4


Q ss_pred             CCeEEE
Q 031568           92 VGGIAV   97 (157)
Q Consensus        92 ~gG~iv   97 (157)
                      +...++
T Consensus        76 ~~~~i~   81 (140)
T d1a2oa1          76 PMPVVM   81 (140)
T ss_dssp             CCCEEE
T ss_pred             CCCcEE
Confidence            444443

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.85  E-value=0.53  Score=28.41  Aligned_cols=75  Identities=12%  Similarity=0.134  Sum_probs=51.8

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~   92 (157)
                      .+|..||-++...+..+..++..|.  .+. ...++.+.+..+.     ..+||+|++|...+.  ..+.++.. +...+
T Consensus         2 ~rILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~a~~~~~-----~~~~dliilD~~mp~~~g~~~~~~~-~~~~~   72 (120)
T d1zgza1           2 HHIVIVEDEPVTQARLQSYFTQEGY--TVS-VTASGAGLREIMQ-----NQSVDLILLDINLPDENGLMLTRAL-RERST   72 (120)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHH-HTTCC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hcCCCEEeeehhhccchhHHHHHHH-hccCC
Confidence            4799999999999999999999886  353 5567777776664     467999999975443  23344433 33333


Q ss_pred             CeEEEE
Q 031568           93 GGIAVY   98 (157)
Q Consensus        93 gG~iv~   98 (157)
                      -.+|++
T Consensus        73 ~piI~l   78 (120)
T d1zgza1          73 VGIILV   78 (120)
T ss_dssp             CEEEEE
T ss_pred             CeEEEE
Confidence            444443

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.58  E-value=0.26  Score=32.49  Aligned_cols=91  Identities=10%  Similarity=0.058  Sum_probs=53.0

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHH---HHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL---SVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~---~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      |.....+|+.. +++++++-.+++..+...+.+++.|.+.-+..-..+..   +.+....+.  ..+.+|+|| |+-   
T Consensus        43 G~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~--~g~~vdvv~-D~v---  115 (189)
T d1gu7a2          43 GKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQ--SGGEAKLAL-NCV---  115 (189)
T ss_dssp             HHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHH--HTCCEEEEE-ESS---
T ss_pred             HHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhh--ccCCceEEE-ECC---
Confidence            33444456554 78888886666666666677777887532221111211   122221100  145699988 442   


Q ss_pred             cHHHHHHHHhcccCCeEEEEe
Q 031568           79 YCNYHERLMKLLKVGGIAVYD   99 (157)
Q Consensus        79 ~~~~~~~~~~~L~~gG~iv~~   99 (157)
                      -.+.+....+.|+++|.++.-
T Consensus       116 g~~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2         116 GGKSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             CHHHHHHHHHTSCTTCEEEEC
T ss_pred             CcchhhhhhhhhcCCcEEEEE
Confidence            244567788999999999864

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=91.98  E-value=0.77  Score=28.40  Aligned_cols=76  Identities=16%  Similarity=-0.013  Sum_probs=50.4

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~   92 (157)
                      .+|.-+|=++...+..++.++..+.. .+-....++.+.+..+.     ...||+|++|-..+  +-.+.++.+.+. .|
T Consensus         3 i~VLiVDD~~~~r~~l~~~L~~~~~~-~~v~~a~~~~~al~~~~-----~~~~DlvllD~~mP~~~G~el~~~ir~~-~~   75 (138)
T d1a04a2           3 ATILLIDDHPMLRTGVKQLISMAPDI-TVVGEASNGEQGIELAE-----SLDPDLILLDLNMPGMNGLETLDKLREK-SL   75 (138)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTCTTE-EEEEEESSHHHHHHHHH-----HHCCSEEEEETTSTTSCHHHHHHHHHHS-CC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHH-----hcCCCEEEEecCCCCCCHHHHHHHHHhh-CC
Confidence            57999999999999999888665421 12223567887776554     35799999997543  335566666543 34


Q ss_pred             CeEEE
Q 031568           93 GGIAV   97 (157)
Q Consensus        93 gG~iv   97 (157)
                      ...++
T Consensus        76 ~~~vi   80 (138)
T d1a04a2          76 SGRIV   80 (138)
T ss_dssp             CSEEE
T ss_pred             CCCEE
Confidence            44333

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.87  E-value=0.14  Score=33.82  Aligned_cols=79  Identities=9%  Similarity=0.079  Sum_probs=47.0

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM   87 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~   87 (157)
                      +++. -+++|+++-.+++..+.+++    .|.+.-+. ...+..+.....     ..+.||+||=...    ...++...
T Consensus        51 lak~-~Ga~Viat~~s~~k~~~~~~----lGa~~vi~-~~~~~~~~~~~~-----~~~gvD~vid~vg----g~~~~~~l  115 (176)
T d1xa0a2          51 MLAK-RGYTVEASTGKAAEHDYLRV----LGAKEVLA-REDVMAERIRPL-----DKQRWAAAVDPVG----GRTLATVL  115 (176)
T ss_dssp             HHHH-TTCCEEEEESCTTCHHHHHH----TTCSEEEE-CC---------C-----CSCCEEEEEECST----TTTHHHHH
T ss_pred             HHHH-cCCceEEecCchHHHHHHHh----cccceeee-cchhHHHHHHHh-----hccCcCEEEEcCC----chhHHHHH
Confidence            4444 59999999999999887765    45442222 222222222222     2467998764332    22477889


Q ss_pred             hcccCCeEEEEecc
Q 031568           88 KLLKVGGIAVYDNT  101 (157)
Q Consensus        88 ~~L~~gG~iv~~~~  101 (157)
                      +.|++||.++.-..
T Consensus       116 ~~l~~~Griv~~G~  129 (176)
T d1xa0a2         116 SRMRYGGAVAVSGL  129 (176)
T ss_dssp             HTEEEEEEEEECSC
T ss_pred             HHhCCCceEEEeec
Confidence            99999999997443

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.78  E-value=0.08  Score=36.82  Aligned_cols=37  Identities=5%  Similarity=-0.252  Sum_probs=32.5

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA   37 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~   37 (157)
                      ||-.|++.|+..-+-+.+++|++++..+.|++.++..
T Consensus       216 ~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         216 AGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            6777888888666899999999999999999999865

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.41  E-value=1.4  Score=30.19  Aligned_cols=69  Identities=10%  Similarity=0.034  Sum_probs=48.5

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH------HHHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |.+++..+++ .+.+|+.++.+++.++.+.+.++..+...++..+.+|..+      .+....+   ..+..|.++.++
T Consensus        23 G~aiA~~la~-~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~---~~g~iD~lVnnA   97 (257)
T d1xg5a_          23 GAAVARALVQ-QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS---QHSGVDICINNA   97 (257)
T ss_dssp             HHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH---HHCCCSEEEECC
T ss_pred             HHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH---hcCCCCEEEecc
Confidence            3334333333 4889999999999999998888888776688888998754      2222221   136799998765

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=91.18  E-value=0.03  Score=39.28  Aligned_cols=73  Identities=11%  Similarity=0.120  Sum_probs=49.2

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC   80 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~   80 (157)
                      +|.=|..|+..  +.+|++||+|+.+++.+++.+.   ..++++++++|+.++  .+     +..+++.|+.+-+..-.-
T Consensus        40 ~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~--~~-----~~~~~~~vv~NLPY~Ist  107 (245)
T d1yuba_          40 KGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQF--QF-----PNKQRYKIVGNIPYHLST  107 (245)
T ss_dssp             CSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTT--TC-----CCSSEEEEEEECCSSSCH
T ss_pred             ccHHHHHHHhh--cCceeEeeecccchhhhhhhhh---hccchhhhhhhhhcc--cc-----ccceeeeEeeeeehhhhH
Confidence            35566677765  5799999999999988877553   235899999999875  22     235666777665433333


Q ss_pred             HHHHH
Q 031568           81 NYHER   85 (157)
Q Consensus        81 ~~~~~   85 (157)
                      .++..
T Consensus       108 ~il~~  112 (245)
T d1yuba_         108 QIIKK  112 (245)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33333

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=90.91  E-value=0.11  Score=36.34  Aligned_cols=47  Identities=15%  Similarity=0.107  Sum_probs=35.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   53 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   53 (157)
                      |.=|..|+..  +.+|++||+|+.+++..++..   ...++++++++|+.++
T Consensus        33 G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~---~~~~~~~ii~~D~l~~   79 (252)
T d1qyra_          33 AALTEPVGER--LDQLTVIELDRDLAARLQTHP---FLGPKLTIYQQDAMTF   79 (252)
T ss_dssp             TTTHHHHHTT--CSCEEEECCCHHHHHHHHTCT---TTGGGEEEECSCGGGC
T ss_pred             hHHHHHHHcc--CCceEEEEeccchhHHHHHHh---hhccchhHHhhhhhhh
Confidence            5456666654  578999999999999887733   2235899999999863

>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]

Probab=90.26  E-value=0.81  Score=28.78  Aligned_cols=74  Identities=11%  Similarity=0.108  Sum_probs=49.8

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcC-----CCCCceeEEEEcCCCcc--cHHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----ENEGSFDYAFVDADKDN--YCNYHER   85 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~-----~~~~~fD~I~iD~~~~~--~~~~~~~   85 (157)
                      ...+|..||=++......++.+++.|+...+ ....|+.+.+..+.+..     .....||+|++|...+.  -.++++.
T Consensus         5 ~~~~ILiVDD~~~~~~~l~~~L~~~g~~~~v-~~a~~g~eAl~~l~~~~~~~~~~~~~~pdlillD~~mP~~~G~el~~~   83 (149)
T d1k66a_           5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPI-YRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQE   83 (149)
T ss_dssp             TTSCEEEECCCHHHHHHHHHHHHHTTBCSCE-EEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHH
T ss_pred             CCCcEEEEECCHHHHHHHHHHHHHcCCceEE-EEECChHHHHHHHHhhccccccccccCCCeEEccccccCCCcHHHHHH
Confidence            3457999999999999999999999875434 34567777665553110     01236999999975443  2445555


Q ss_pred             HH
Q 031568           86 LM   87 (157)
Q Consensus        86 ~~   87 (157)
                      +.
T Consensus        84 ir   85 (149)
T d1k66a_          84 IK   85 (149)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]

Probab=90.22  E-value=1.2  Score=27.68  Aligned_cols=74  Identities=11%  Similarity=0.123  Sum_probs=49.6

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcC--CCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS--ENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~--~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      ..+|..||=++......++.+++.|..-++. ...|..+.+..+.+..  ....+||+|++|...+.  -.++++.+..
T Consensus         2 ~krILiVDD~~~~~~~l~~~L~~~g~~~~v~-~a~~g~eAl~~l~~~~~~~~~~~pdlillD~~mP~~dG~el~~~ir~   79 (140)
T d1k68a_           2 HKKIFLVEDNKADIRLIQEALANSTVPHEVV-TVRDGMEAMAYLRQEGEYANASRPDLILLDLNLPKKDGREVLAEIKS   79 (140)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHTCSSCCEEE-EECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHcCCCeEEE-EECCHHHHHHHHHHhHHhhccCCCCEEEEeeccccccChHHHHHHHh
Confidence            3589999999999999999999887653443 3456677666553210  01346999999975443  3455555543

>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Positive regulator of the amidase operon AmiR
domain: Positive regulator of the amidase operon AmiR
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.16  E-value=0.76  Score=29.77  Aligned_cols=59  Identities=10%  Similarity=0.133  Sum_probs=43.4

Q ss_pred             HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568            8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN   78 (157)
Q Consensus         8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~   78 (157)
                      +.....+.+|..+|-++......+..+++.|.  ++... .++.+.+         ...||+|++|...+.
T Consensus         5 ~~~~l~~~~iLvvdd~~~~~~~l~~~L~~~G~--~v~~~-~~~~~al---------~~~~Dlvl~D~~mp~   63 (189)
T d1qo0d_           5 LLGSLRELQVLVLNPPGEVSDALVLQLIRIGC--SVRQC-WPPPEAF---------DVPVDVVFTSIFQNR   63 (189)
T ss_dssp             HHHTGGGCEEEEESCTTHHHHHHHHHHHHHTC--EEEEE-CSCCSSC---------SSCCSEEEEECCSST
T ss_pred             HHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC--cceec-CCHHHhc---------cCCCCEEEEcCCCCC
Confidence            34444578999999999999999999999986  34333 3443332         357999999976543

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=90.07  E-value=1.2  Score=26.89  Aligned_cols=71  Identities=10%  Similarity=0.149  Sum_probs=47.5

Q ss_pred             cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568           15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV   92 (157)
Q Consensus        15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~   92 (157)
                      .+|..||=++...+..++.++..|   .+. ...++.+.+..       ..+||+|++|-..+.  -.+.++.+.. ..|
T Consensus         3 ~kILiVDDd~~~~~~l~~~L~~~g---~v~-~~~~~~~al~~-------~~~~dlillD~~mP~~~G~~~~~~lr~-~~~   70 (120)
T d1p2fa2           3 WKIAVVDDDKNILKKVSEKLQQLG---RVK-TFLTGEDFLND-------EEAFHVVVLDVMLPDYSGYEICRMIKE-TRP   70 (120)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTTE---EEE-EESSHHHHHHC-------CSCCSEEEEESBCSSSBHHHHHHHHHH-HCT
T ss_pred             CEEEEEECCHHHHHHHHHHHHhCC---EEE-EECCHHHHHhc-------CCCCCEEEEeCcccccchhHHHHHHhh-cCC
Confidence            378999999999999999998765   343 45677777652       467999999975432  2445555443 234


Q ss_pred             CeEEE
Q 031568           93 GGIAV   97 (157)
Q Consensus        93 gG~iv   97 (157)
                      .--++
T Consensus        71 ~~~ii   75 (120)
T d1p2fa2          71 ETWVI   75 (120)
T ss_dssp             TSEEE
T ss_pred             CCcEE
Confidence            44333

>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Probable two-component system transcriptional regulator Rv1626
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.06  E-value=0.55  Score=30.75  Aligned_cols=68  Identities=6%  Similarity=-0.042  Sum_probs=49.3

Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568           14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK   88 (157)
Q Consensus        14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~   88 (157)
                      ..+|.-||=+|......+..++..|+  .+--..+++.+.+....     ...||+|++|-..+.  -.++.+.+.+
T Consensus         3 p~kILiVDD~~~~r~~l~~~L~~~g~--~vv~~a~~g~eal~~~~-----~~~pDlvllDi~mP~~dG~e~~~~ir~   72 (190)
T d1s8na_           3 PRRVLIAEDEALIRMDLAEMLREEGY--EIVGEAGDGQEAVELAE-----LHKPDLVIMDVKMPRRDGIDAASEIAS   72 (190)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHh-----cCCCCEEEEeccccCcchHHHHHHHHh
Confidence            46899999999999999999998775  33234577877776554     468999999975432  3445555544

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=89.67  E-value=0.096  Score=36.99  Aligned_cols=38  Identities=5%  Similarity=-0.094  Sum_probs=32.0

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG   38 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~   38 (157)
                      ||-.|...|+..-+-+.+++|++++.++.|++.+.+..
T Consensus       259 ~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         259 GGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             CTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhcc
Confidence            57778888886679999999999999999998776543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=89.17  E-value=1.3  Score=26.88  Aligned_cols=80  Identities=9%  Similarity=0.037  Sum_probs=50.7

Q ss_pred             HHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568            7 LFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHE   84 (157)
Q Consensus         7 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~   84 (157)
                      .++....+..++.+|.+++..+.++.    .    .+.++.||+.+  .+.+.     .-++.+.+++..+....--..-
T Consensus        14 ~l~~~L~~~~i~vi~~d~~~~~~~~~----~----~~~~i~Gd~~~~~~L~~a-----~i~~A~~vi~~~~~d~~n~~~~   80 (129)
T d2fy8a1          14 ECLRELRGSEVFVLAEDENVRKKVLR----S----GANFVHGDPTRVSDLEKA-----NVRGARAVIVNLESDSETIHCI   80 (129)
T ss_dssp             HHHHTSCGGGEEEEESCTTHHHHHHH----T----TCEEEESCTTSHHHHHHT-----TCTTCSEEEECCSSHHHHHHHH
T ss_pred             HHHHHHcCCCCEEEEcchHHHHHHHh----c----CccccccccCCHHHHHHh-----hhhcCcEEEEeccchhhhHHHH
Confidence            34555556678999999998765532    2    46789999854  44443     1457888888765333222233


Q ss_pred             HHHhcccCCeEEEEe
Q 031568           85 RLMKLLKVGGIAVYD   99 (157)
Q Consensus        85 ~~~~~L~~gG~iv~~   99 (157)
                      ...+.+.|...+++.
T Consensus        81 ~~~r~~~~~~~iia~   95 (129)
T d2fy8a1          81 LGIRKIDESVRIIAE   95 (129)
T ss_dssp             HHHHHHCSSSCEEEE
T ss_pred             HHHHHHCCCceEEEE
Confidence            345677888776663

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.47  E-value=1.7  Score=26.38  Aligned_cols=73  Identities=14%  Similarity=0.106  Sum_probs=44.4

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL   90 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L   90 (157)
                      .+..|+.+|.||+.++.+++.   .    .+.+++||+.+  .+...     .-+..|.++.-......--......+.+
T Consensus        22 ~g~~v~vid~d~~~~~~~~~~---~----~~~vi~Gd~~~~~~l~~~-----~i~~a~~vv~~t~~d~~N~~~~~~~k~~   89 (132)
T d1lssa_          22 KGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDA-----GIEDADMYIAVTGKEEVNLMSSLLAKSY   89 (132)
T ss_dssp             TTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHT-----TTTTCSEEEECCSCHHHHHHHHHHHHHT
T ss_pred             CCCCcceecCChhhhhhhhhh---h----hhhhccCcccchhhhhhc-----ChhhhhhhcccCCcHHHHHHHHHHHHHc
Confidence            477999999999998876542   2    35689999865  34433     1357888887443222111223334556


Q ss_pred             cCCeEEE
Q 031568           91 KVGGIAV   97 (157)
Q Consensus        91 ~~gG~iv   97 (157)
                      .+.-+++
T Consensus        90 ~~~~iI~   96 (132)
T d1lssa_          90 GINKTIA   96 (132)
T ss_dssp             TCCCEEE
T ss_pred             CCceEEE
Confidence            6665543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=86.56  E-value=1.7  Score=29.82  Aligned_cols=69  Identities=14%  Similarity=0.154  Sum_probs=46.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH------HHHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |..++...+. .+.+|+.++.+++.++.+.+.+...+...++..+.+|..+      .+.+..+   ..++.|.++.++
T Consensus        17 G~aia~~la~-~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~---~~G~iDiLVnnA   91 (258)
T d1iy8a_          17 GRATAVRLAA-EGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE---RFGRIDGFFNNA   91 (258)
T ss_dssp             HHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH---HHSCCSEEEECC
T ss_pred             HHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH---HhCCCCEEEECC
Confidence            3444443333 4899999999999999888877766655578888888643      2222221   136799998765

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=86.29  E-value=2.4  Score=28.85  Aligned_cols=67  Identities=18%  Similarity=0.175  Sum_probs=46.7

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |..++..++. .+.+|+.++.+++.++.+.+.++..+.  ++..+.+|..+.      +....+   ..++.|.++.++
T Consensus        15 G~aia~~la~-~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~---~~g~iDilVnnA   87 (257)
T d2rhca1          15 GLEIARRLGK-EGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVE---RYGPVDVLVNNA   87 (257)
T ss_dssp             HHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH---HTCSCSEEEECC
T ss_pred             HHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHH---HhCCCCEEEecc
Confidence            4444443333 488999999999999999888887764  688898886532      222222   146899998765

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.90  E-value=2  Score=29.63  Aligned_cols=69  Identities=23%  Similarity=0.248  Sum_probs=48.1

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHH------HHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSV------LDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~------l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |.+++..++. .+.+|+.++.+++.++.+.+.+...+.. .++..+.+|..+.      +....+   ..++.|.++..+
T Consensus        17 G~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~~G~iDilVnnA   92 (274)
T d1xhla_          17 GRSAAVIFAK-EGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA---KFGKIDILVNNA   92 (274)
T ss_dssp             HHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH---HHSCCCEEEECC
T ss_pred             HHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH---HcCCceEEEeec
Confidence            4444443333 4889999999999999999988887754 5789999986442      222221   135799999865

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.57  E-value=0.32  Score=35.06  Aligned_cols=48  Identities=6%  Similarity=0.133  Sum_probs=36.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   53 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~   53 (157)
                      |.=|..|.......+|+++|+|+..++..++.+.    .++++++++|+..+
T Consensus        55 G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          55 GIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYDW  102 (322)
T ss_dssp             CHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTCH
T ss_pred             CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhhc
Confidence            5555566654334699999999999998887553    35799999999865

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=85.12  E-value=0.12  Score=33.76  Aligned_cols=81  Identities=17%  Similarity=0.162  Sum_probs=49.1

Q ss_pred             HHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHH
Q 031568            6 KLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER   85 (157)
Q Consensus         6 ~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~   85 (157)
                      .-+|+. -+++|+++-.+++..+.+++    .|.+ .+  +.  ..+........ ...+.+|.|+-...    .+.++.
T Consensus        41 vQlAk~-~Ga~Viat~~s~~k~~~~~~----lGad-~v--i~--~~~~~~~~~~~-~~~~gvd~vid~vg----g~~~~~  105 (167)
T d1tt7a2          41 VSMLNK-RGYDVVASTGNREAADYLKQ----LGAS-EV--IS--REDVYDGTLKA-LSKQQWQGAVDPVG----GKQLAS  105 (167)
T ss_dssp             HHHHHH-HTCCEEEEESSSSTHHHHHH----HTCS-EE--EE--HHHHCSSCCCS-SCCCCEEEEEESCC----THHHHH
T ss_pred             HHHHHH-cCCceEEEecCHHHHHHHHh----hccc-ce--Ee--ccchhchhhhc-ccCCCceEEEecCc----HHHHHH
Confidence            335554 47899999999988877655    4543 22  21  22221111000 12356999874432    346788


Q ss_pred             HHhcccCCeEEEEecc
Q 031568           86 LMKLLKVGGIAVYDNT  101 (157)
Q Consensus        86 ~~~~L~~gG~iv~~~~  101 (157)
                      ..+.|+++|.+++-..
T Consensus       106 ~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2         106 LLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             HHTTEEEEEEEEECCC
T ss_pred             HHHHhccCceEEEeec
Confidence            9999999999987443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.58  E-value=3  Score=28.37  Aligned_cols=67  Identities=12%  Similarity=0.181  Sum_probs=46.2

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH------HHHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |..++..++ ..+.+|+.++.+++.++.+.+.++..|.  ++..+.+|..+      .+.+..+   ..+..|.++.++
T Consensus        23 G~a~a~~la-~~Ga~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~---~~g~iDilvnna   95 (251)
T d2c07a1          23 GREIAKMLA-KSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILT---EHKNVDILVNNA   95 (251)
T ss_dssp             HHHHHHHHT-TTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHH---HCSCCCEEEECC
T ss_pred             HHHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH---hcCCceeeeecc
Confidence            334444333 3588999999999999998888877653  68888898754      2232222   146899988765

>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=84.33  E-value=0.71  Score=29.28  Aligned_cols=65  Identities=17%  Similarity=0.091  Sum_probs=42.7

Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568           13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM   87 (157)
Q Consensus        13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~   87 (157)
                      .+++|..||=++...+..++.+...|.    .+..+.. +.+.-..     ..+||+|++|-..+.  -.++.+.+.
T Consensus        12 ~~~rILiVDD~~~~~~~l~~~L~~~g~----~v~~~~~-~~~~~~~-----~~~~DlillD~~mP~~dG~el~~~ir   78 (153)
T d1w25a2          12 LGGRVLIVDDNERQAQRVAAELGVEHR----PVIESDP-EKAKISA-----GGPVDLVIVNAAAKNFDGLRFTAALR   78 (153)
T ss_dssp             CSCEEEEECSCHHHHHHHHHHHTTTSE----EEEECCH-HHHHHHH-----HSSCSEEEEETTCSSSCHHHHHHHHH
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHHCCC----EEEEccH-HHHHHHh-----cCCCCEEEEECccccccchHHHHHHH
Confidence            377999999999999999888876553    3344333 3332222     467999999975443  244555554

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.32  E-value=2.5  Score=29.13  Aligned_cols=69  Identities=22%  Similarity=0.293  Sum_probs=47.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHH------HHHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~------~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |..++..++. .+.+|+.++.+++.++.+.+.+++.+.. .++..+.+|..+      .+....+   ..+..|.++.++
T Consensus        18 G~aia~~la~-~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~---~~g~iDilvnnA   93 (272)
T d1xkqa_          18 GRTTAILFAQ-EGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK---QFGKIDVLVNNA   93 (272)
T ss_dssp             HHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH---HHSCCCEEEECC
T ss_pred             HHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH---HhCCceEEEeCC
Confidence            3444443333 4889999999999999999988887654 468899998653      2222221   136799999765

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.07  E-value=3.7  Score=27.85  Aligned_cols=67  Identities=19%  Similarity=0.177  Sum_probs=46.8

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH------HHHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |..++...+. .+.+|+.++.+++.++.+.+.+...|.  ++..+.+|..+      .+....+   ..++.|.++.++
T Consensus        14 G~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~---~~g~iDilVnnA   86 (255)
T d1gega_          14 GKAIALRLVK-DGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARK---TLGGFDVIVNNA   86 (255)
T ss_dssp             HHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH---HTTCCCEEEECC
T ss_pred             HHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHH---HhCCccEEEecc
Confidence            4444443333 488999999999999998888887763  68888999754      2233222   146899999765

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.69  E-value=3.3  Score=28.22  Aligned_cols=69  Identities=20%  Similarity=0.236  Sum_probs=47.3

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHH------HHHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~------~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |..++...+. .+.+|+.++.+++.++.+.+.+...+.. .++..+.+|..+      .+....+   ..++.|.++.++
T Consensus        18 G~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~---~~g~iDilvnnA   93 (264)
T d1spxa_          18 GRATAVLFAR-EGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG---KFGKLDILVNNA   93 (264)
T ss_dssp             HHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH---HHSCCCEEEECC
T ss_pred             HHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH---HhCCCCEeeccc
Confidence            3344433333 4889999999999999998888887654 569999998743      2232221   136799988764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=83.25  E-value=2.8  Score=28.65  Aligned_cols=67  Identities=25%  Similarity=0.395  Sum_probs=45.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH------HHHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |..++..++. .+++|+.++.+++.++.+.+.++..|.  ++..+.+|+.+      .+....+   ..+..|.++..+
T Consensus        18 G~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~---~~g~iDilVnna   90 (260)
T d1zema1          18 GLATALRLAE-EGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVR---DFGKIDFLFNNA   90 (260)
T ss_dssp             HHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHH---HHSCCCEEEECC
T ss_pred             HHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH---HhCCCCeehhhh
Confidence            4444443333 488999999999999999888877654  68888888653      2232221   136799999765

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.81  E-value=2.3  Score=28.98  Aligned_cols=70  Identities=14%  Similarity=0.076  Sum_probs=46.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHhhcCCCCCceeEEEEcCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYSENEGSFDYAFVDAD   75 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~~~~~~fD~I~iD~~   75 (157)
                      |.+++...+. .+++|+.++.+++.++.+.+.+....-..++.++.+|..+.      +....+   ..++.|.++.++.
T Consensus        16 G~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~---~~G~iDilVnnAg   91 (254)
T d2gdza1          16 GRAFAEALLL-KGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVD---HFGRLDILVNNAG   91 (254)
T ss_dssp             HHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHH---HHSCCCEEEECCC
T ss_pred             HHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHH---HcCCcCeeccccc
Confidence            4445544444 48999999999999888877776543345788899996542      222221   1367999988764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=82.74  E-value=1  Score=29.71  Aligned_cols=97  Identities=19%  Similarity=0.050  Sum_probs=53.4

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC-C--C--CcE------------EEEEccHHHHHHHHhhcCCCC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG-V--D--HKI------------NFIESEALSVLDQLLKYSENE   64 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~--~--~~i------------~~~~~d~~~~l~~~~~~~~~~   64 (157)
                      |+..+..|... +++|+.+|++++..++.++...++= .  .  ...            ++.... .+.+...      -
T Consensus        41 G~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~-~~~l~~~------l  112 (183)
T d1l7da1          41 GLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ-AEAVLKE------L  112 (183)
T ss_dssp             HHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH-HHHHHHH------H
T ss_pred             HHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH-HHHHHHH------H
Confidence            34444455554 8999999999999998887543221 0  0  001            111111 1122221      1


Q ss_pred             CceeEEEEcCC---CcccHHHHHHHHhcccCCeEEEEecccCCcc
Q 031568           65 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGGT  106 (157)
Q Consensus        65 ~~fD~I~iD~~---~~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~  106 (157)
                      ..-|+|+.-..   ++...-+-+...+.+|||.+||=-.+-..|.
T Consensus       113 ~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn  157 (183)
T d1l7da1         113 VKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGN  157 (183)
T ss_dssp             TTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred             HhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCc
Confidence            35899987542   2211113456778999999988655555554

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.14  E-value=3.7  Score=27.96  Aligned_cols=67  Identities=13%  Similarity=0.079  Sum_probs=45.9

Q ss_pred             cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHhhcCCCCCceeEEEEcC
Q 031568            2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYSENEGSFDYAFVDA   74 (157)
Q Consensus         2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~~~~~~fD~I~iD~   74 (157)
                      |..++...+. .+++|+.++.+++.++.+.+.++..|.  ++..+.+|..+.      +....+   ..++.|.++..+
T Consensus        24 G~aia~~la~-~Ga~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~---~~g~iDilvnnA   96 (255)
T d1fmca_          24 GKEIAITFAT-AGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAIS---KLGKVDILVNNA   96 (255)
T ss_dssp             HHHHHHHHHT-TTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH---HHSSCCEEEECC
T ss_pred             HHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHH---HcCCCCEeeeCC
Confidence            4444443333 589999999999999999888887663  688888997542      222221   136799988765

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.01  E-value=4.9  Score=26.18  Aligned_cols=30  Identities=7%  Similarity=0.070  Sum_probs=22.5

Q ss_pred             CcccHHHHHhhCCCcEEEEEeCChhHHHHHH
Q 031568            1 MHLPTKLFMTGNKILQITAIDVNRETYEIGL   31 (157)
Q Consensus         1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~   31 (157)
                      .|++++...+. .+-+|+++|+|++.++...
T Consensus        11 vGl~~a~~la~-~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2          11 VGAVCAGCLSA-RGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             THHHHHHHHHH-TTCEEEEECSCHHHHHHHH
T ss_pred             hHHHHHHHHHh-CCCcEEEEeCCHHHHHHhc
Confidence            36677666654 4779999999999887654

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=81.20  E-value=1.9  Score=31.82  Aligned_cols=38  Identities=8%  Similarity=0.015  Sum_probs=30.2

Q ss_pred             cccHHHHHhhC--CCcEEEEEeCChhHHHHHHHHHHHcCC
Q 031568            2 HLPTKLFMTGN--KILQITAIDVNRETYEIGLPIIKKAGV   39 (157)
Q Consensus         2 g~st~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~   39 (157)
                      |.++..+++..  ...+|+++|++|...+..++|++.++.
T Consensus       224 G~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         224 GESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             SHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            66666666643  357999999999999999999987654