Citrus Sinensis ID: 031593

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIGMKNSMPRRQLKRKVPKTKTG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccc
Coil and Loop (DISEMBL)
MAFVSFVGRVLFASIFLLSAWQEFNefgvdggpaakslepkfhifskhvlshtgvqvpdVEIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATpilydfynydadkkEFGQIFIKFTQSLALLGALLFFIGmknsmprrqlkrkvpktktg
Flexible Loop (DISEMBL)
MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIgmknsmprrqlkrkvpktktg
Low Complexity Region (SEG)
MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVaaaialkgiggllfifgssfgaYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSlallgallffigMKNSMPRRQLKRKVPKTKTG
Disordered region (IsUnstruct)
**FVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIGM*******************
Disordered Region (DISOPRED)
*AFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIG********************
Disordered Region (DISEMBL)
MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIGMKNSMPR*************
Disordered Region (DISPRO)
*AFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIGMKNS****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIGMKNSMPRRQLKRKVPKTKTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
255576842	157	conserved hypothetical protein [Ricinus	0.993	0.993	0.826	5e-70
296083598	157	unnamed protein product [Vitis vinifera]	0.993	0.993	0.807	9e-68
225433007	230	PREDICTED: uncharacterized protein LOC10	0.993	0.678	0.807	9e-68
388496746	156	unknown [Lotus japonicus] gi|388500218|g	0.987	0.993	0.743	9e-61
118482693	157	unknown [Populus trichocarpa] gi|1184832	0.993	0.993	0.724	2e-60
224082778	157	predicted protein [Populus trichocarpa]	1.0	1.0	0.757	1e-59
118482114	157	unknown [Populus trichocarpa]	0.936	0.936	0.775	1e-59
118485553	157	unknown [Populus trichocarpa]	1.0	1.0	0.751	2e-59
224111008	157	predicted protein [Populus trichocarpa]	0.936	0.936	0.768	9e-59
351725091	156	uncharacterized protein LOC100305592 pre	0.987	0.993	0.711	2e-56

>gi|255576842|ref|XP_002529307.1| conserved hypothetical protein [Ricinus communis] gi|223531231|gb|EEF33076.1| conserved hypothetical protein [Ricinus communis]

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 129/156 (82%), Positives = 145/156 (92%)

Query: 1   MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
           MAF SFVGRVLFAS+F+LSAWQEFN+FGVDGGPAAKS  PKF++FS+HV S+TG QVP V
Sbjct: 1   MAFASFVGRVLFASVFILSAWQEFNDFGVDGGPAAKSFAPKFNVFSRHVSSNTGFQVPPV 60

Query: 61  EIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
           EIK+LVAAAIA+KG+GGLLFIFGSSFGAYLLLLHQA+ TPILYDFYNYDADKKEF Q+F 
Sbjct: 61  EIKHLVAAAIAVKGLGGLLFIFGSSFGAYLLLLHQAVVTPILYDFYNYDADKKEFHQLFT 120

Query: 121 KFTQSLALLGALLFFIGMKNSMPRRQLKRKVPKTKT 156
           KFTQ+LAL GALLFFIGMKNS+PRRQLK+K PK+KT
Sbjct: 121 KFTQNLALFGALLFFIGMKNSIPRRQLKKKTPKSKT 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083598|emb|CBI23587.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 141/156 (90%)

Query: 1   MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
           MAFVSFVGRVLFAS+F+LSAWQEFNEFGVDGGPA +SL PK  +FSKHV ++ GVQVP+V
Sbjct: 1   MAFVSFVGRVLFASVFILSAWQEFNEFGVDGGPAVESLAPKLDVFSKHVSANVGVQVPEV 60

Query: 61  EIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
           EIK LVAA+IALKG+GGLLFIFGSS GA+LLLLHQA+  PILYDFYNYD DKKEF  +F+
Sbjct: 61  EIKNLVAASIALKGLGGLLFIFGSSLGAHLLLLHQAIVIPILYDFYNYDVDKKEFVVLFL 120

Query: 121 KFTQSLALLGALLFFIGMKNSMPRRQLKRKVPKTKT 156
           KFTQ+LAL GALLFFIGMKNSMPRRQLK+K PKTKT
Sbjct: 121 KFTQNLALFGALLFFIGMKNSMPRRQLKKKAPKTKT 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433007|ref|XP_002284580.1| PREDICTED: uncharacterized protein LOC100245894 [Vitis vinifera]

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 141/156 (90%)

Query: 1   MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
           MAFVSFVGRVLFAS+F+LSAWQEFNEFGVDGGPA +SL PK  +FSKHV ++ GVQVP+V
Sbjct: 74  MAFVSFVGRVLFASVFILSAWQEFNEFGVDGGPAVESLAPKLDVFSKHVSANVGVQVPEV 133

Query: 61  EIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
           EIK LVAA+IALKG+GGLLFIFGSS GA+LLLLHQA+  PILYDFYNYD DKKEF  +F+
Sbjct: 134 EIKNLVAASIALKGLGGLLFIFGSSLGAHLLLLHQAIVIPILYDFYNYDVDKKEFVVLFL 193

Query: 121 KFTQSLALLGALLFFIGMKNSMPRRQLKRKVPKTKT 156
           KFTQ+LAL GALLFFIGMKNSMPRRQLK+K PKTKT
Sbjct: 194 KFTQNLALFGALLFFIGMKNSMPRRQLKKKAPKTKT 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496746|gb|AFK36439.1| unknown [Lotus japonicus] gi|388500218|gb|AFK38175.1| unknown [Lotus japonicus]

 Score =  238 bits (606), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 116/156 (74%), Positives = 135/156 (86%), Gaps = 1/156 (0%)

Query: 1   MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
           MAF+SF+GRVLFAS+F+LSA+QEFNEFGVDGGPAAKSL PKF  F+  V S  G Q+P++
Sbjct: 1   MAFISFLGRVLFASVFILSAYQEFNEFGVDGGPAAKSLRPKFDTFTSRVHSQVGFQLPEI 60

Query: 61  EIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
           +IK L+A AIALKG+GGLLFIFGSSFGA LLLLHQ +ATPI YDFYN+D + KEF Q+FI
Sbjct: 61  DIKVLIAGAIALKGVGGLLFIFGSSFGAVLLLLHQLIATPIRYDFYNFDNEDKEFAQLFI 120

Query: 121 KFTQSLALLGALLFFIGMKNSMPRRQLKRKVPKTKT 156
           KFTQ++AL GALLFFIGMKNS+PRRQ K K PKTKT
Sbjct: 121 KFTQNMALFGALLFFIGMKNSIPRRQPK-KAPKTKT 155

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482693|gb|ABK93265.1| unknown [Populus trichocarpa] gi|118483255|gb|ABK93530.1| unknown [Populus trichocarpa]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 113/156 (72%), Positives = 130/156 (83%)

Query: 1   MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
           MAF+SFVGRVLFAS+F+LSAWQEFNEFG DGGPAA  + PKF  FSKHV SHTG QVP  
Sbjct: 1   MAFISFVGRVLFASVFILSAWQEFNEFGSDGGPAAHIMAPKFRSFSKHVSSHTGFQVPHF 60

Query: 61  EIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
           E+K+ VAAA+++K +G L+FI GSS GAYLLLLHQ + TPILYDFYNYDAD KEF  +F 
Sbjct: 61  EMKHAVAAAMSVKAVGSLIFILGSSIGAYLLLLHQLIVTPILYDFYNYDADTKEFNLLFA 120

Query: 121 KFTQSLALLGALLFFIGMKNSMPRRQLKRKVPKTKT 156
           KF Q+LAL GALLFFIGMKNS+PRRQLK++ PK K 
Sbjct: 121 KFAQNLALFGALLFFIGMKNSIPRRQLKKRSPKPKA 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082778|ref|XP_002306835.1| predicted protein [Populus trichocarpa] gi|222856284|gb|EEE93831.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/157 (75%), Positives = 143/157 (91%)

Query: 1   MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
           MAF SF+GRVLFAS+F+LSA+QEFNEFGVDGGPAAK+L+PKF +F+ HV SH G+QVP++
Sbjct: 1   MAFTSFLGRVLFASVFILSAYQEFNEFGVDGGPAAKALKPKFGVFTSHVQSHAGIQVPEI 60

Query: 61  EIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
           EIK+LV+AAI LKGIGG+LFI GSS GAYLL++HQ +A PILYDFYNYD+++KEF Q+FI
Sbjct: 61  EIKHLVSAAIFLKGIGGILFIIGSSLGAYLLIIHQLIAIPILYDFYNYDSEEKEFNQLFI 120

Query: 121 KFTQSLALLGALLFFIGMKNSMPRRQLKRKVPKTKTG 157
           KFTQ++AL GALLFFIGMKNS PRRQ K+KVPKTKTG
Sbjct: 121 KFTQNMALYGALLFFIGMKNSFPRRQHKKKVPKTKTG 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482114|gb|ABK92988.1| unknown [Populus trichocarpa]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 126/147 (85%)

Query: 1   MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
           MAFVSFVGRVLFAS+F+LSAWQEFNEFG +GGPAA  LEPKFH+FSKHV S TG QVP  
Sbjct: 1   MAFVSFVGRVLFASVFILSAWQEFNEFGTNGGPAAHLLEPKFHVFSKHVSSQTGFQVPHF 60

Query: 61  EIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
           E+K+ VAAAI++K  G LLFIFGSS GAYLLLLHQ + TPILYDFYNYDAD KEF  +F 
Sbjct: 61  EMKHAVAAAISVKAFGSLLFIFGSSVGAYLLLLHQIIITPILYDFYNYDADTKEFNLLFA 120

Query: 121 KFTQSLALLGALLFFIGMKNSMPRRQL 147
           KF Q+LAL GALLFFIGMKNS+PRRQL
Sbjct: 121 KFAQNLALFGALLFFIGMKNSIPRRQL 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485553|gb|ABK94628.1| unknown [Populus trichocarpa]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 118/157 (75%), Positives = 143/157 (91%)

Query: 1   MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
           MAF SF+GRVLFAS+++LSA+QEFNEFGVDGGPAAK+L+PKF +F+ HV SH G+QVP++
Sbjct: 1   MAFTSFLGRVLFASVYILSAYQEFNEFGVDGGPAAKALKPKFGVFTSHVQSHAGIQVPEI 60

Query: 61  EIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
           EIK+LV+AAI LKGIGG+LFI GSS GAYLL++HQ +A PILYDFYNYD+++KEF Q+FI
Sbjct: 61  EIKHLVSAAIFLKGIGGILFIIGSSLGAYLLIIHQLIAIPILYDFYNYDSEEKEFNQLFI 120

Query: 121 KFTQSLALLGALLFFIGMKNSMPRRQLKRKVPKTKTG 157
           KFTQ++AL GALLFFIGMKNS PRRQ K+KVPKTKTG
Sbjct: 121 KFTQNMALYGALLFFIGMKNSFPRRQHKKKVPKTKTG 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111008|ref|XP_002315714.1| predicted protein [Populus trichocarpa] gi|222864754|gb|EEF01885.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (589), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 113/147 (76%), Positives = 125/147 (85%)

Query: 1   MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
           MAFVSFVGRVLFAS+F+LSAWQEFNEFG +G PAA  LEPKFH+FSKHV S TG QVP  
Sbjct: 1   MAFVSFVGRVLFASVFILSAWQEFNEFGTNGEPAAHLLEPKFHVFSKHVSSQTGFQVPHF 60

Query: 61  EIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
           E+K+ VAAAI++K  G LLFIFGSS GAYLLLLHQ + TPILYDFYNYDAD KEF  +F 
Sbjct: 61  EMKHAVAAAISVKAFGSLLFIFGSSVGAYLLLLHQIIITPILYDFYNYDADTKEFNLLFA 120

Query: 121 KFTQSLALLGALLFFIGMKNSMPRRQL 147
           KF Q+LAL GALLFFIGMKNS+PRRQL
Sbjct: 121 KFAQNLALFGALLFFIGMKNSIPRRQL 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725091|ref|NP_001237592.1| uncharacterized protein LOC100305592 precursor [Glycine max] gi|255626009|gb|ACU13349.1| unknown [Glycine max]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 135/156 (86%), Gaps = 1/156 (0%)

Query: 1   MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
           MAF SF+GRVLFAS+F+LSA+QEFNEFGVDGGPAAK+L PKF  F+  V S  G Q+P++
Sbjct: 1   MAFASFLGRVLFASVFILSAYQEFNEFGVDGGPAAKALRPKFDAFTHRVHSQVGFQLPEI 60

Query: 61  EIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
           ++K+L+A AI LKG+GG+LFIFGSSFGA LLLLHQ +ATPI YDFYNYD++ KEF Q+FI
Sbjct: 61  DLKFLIAGAITLKGLGGVLFIFGSSFGALLLLLHQLIATPIHYDFYNYDSEDKEFTQLFI 120

Query: 121 KFTQSLALLGALLFFIGMKNSMPRRQLKRKVPKTKT 156
           KFTQ++AL GALLFFIGMKNS+PRR + +K PKTKT
Sbjct: 121 KFTQNMALFGALLFFIGMKNSIPRR-VPKKAPKTKT 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2129720	158	AT4G14420 "AT4G14420" [Arabido	0.987	0.981	0.544	5.3e-40
TAIR|locus:2018364	159	AT1G04340 "AT1G04340" [Arabido	0.987	0.974	0.414	3.1e-28
TAIR|locus:2176476	154	AT5G43460 "AT5G43460" [Arabido	0.961	0.980	0.397	1.8e-25
TAIR|locus:2086248	216	AT3G23190 "AT3G23190" [Arabido	0.222	0.162	0.514	7.6e-13
TAIR|locus:2086238	217	AT3G23180 "AT3G23180" [Arabido	0.668	0.483	0.296	3.7e-09
TAIR|locus:504955777	169	AT3G23175 "AT3G23175" [Arabido	0.643	0.597	0.242	0.00079

TAIR|locus:2129720 AT4G14420 "AT4G14420" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 85/156 (54%), Positives = 100/156 (64%)

Query:     1 MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
             M   SF+GR LF S+FLLSAWQEFN+FG DGG +AKSL+PKF+ F  HV +HTG Q+P V
Sbjct:     1 MELASFLGRALFVSVFLLSAWQEFNDFGEDGGRSAKSLKPKFNAFVNHVTTHTGQQLPPV 60

Query:    61 EIKYLVXXXXXXXXXXXXXXXXXXXXXXYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
             ++K LV                      YLLLLHQA+ATPILYDFYNYD D+KEFGQ+F 
Sbjct:    61 DMKILVAAAIALKGIGGLLFVFGSSLGAYLLLLHQAVATPILYDFYNYDVDRKEFGQLFS 120

Query:   121 KFTQSXXXXXXXXXXXXMKNSMPR-RQLKRKVPKTK 155
             KFTQS            MKNS    RQL++K PK K
Sbjct:   121 KFTQSLALLGGLLFFIGMKNSRKHGRQLRKKAPKAK 156

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2018364 AT1G04340 "AT1G04340" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 65/157 (41%), Positives = 88/157 (56%)

Query:     1 MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
             M F SF+GRVLFAS+F+LSAWQ FN+FG DGGPAAK L PK  +   H+ S  GV +P++
Sbjct:     1 MGFFSFLGRVLFASLFILSAWQMFNDFGTDGGPAAKELAPKLDLTKAHLSSILGVSLPNL 60

Query:    61 EIKYLVXXXXXXXXXXXXXXXXXXXXXXYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
             E+K +V                      YLL ++  + +PILYDFYNY  + ++F  +  
Sbjct:    61 EVKQVVWAIVALKGLGGLLFVIGNIFGAYLLAVYLVVVSPILYDFYNYGPEDRQFSLLLT 120

Query:   121 KFTQSXXXXXXXXXXXXMKNSMP--RRQLKRKVPKTK 155
             +F QS            MKNS    +R LK++ PK K
Sbjct:   121 EFLQSVALLGALLFFIGMKNSTTSSKRILKKRTPKPK 157

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2176476 AT5G43460 "AT5G43460" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 62/156 (39%), Positives = 82/156 (52%)

Query:     1 MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
             M F SF+GRVLFAS+F+LSAWQ FN    DGGPAAK L PK  +   H+ S  GV +P +
Sbjct:     1 MGFFSFLGRVLFASLFILSAWQMFN----DGGPAAKELAPKLDLVKAHLSSRLGVTLPKI 56

Query:    61 EIKYLVXXXXXXXXXXXXXXXXXXXXXXYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
             E++ +V                      YLL  +  +  PILYDFYNY   ++ F  +  
Sbjct:    57 EVRQVVATIIALKGVGGLLFVIGNTFGAYLLASYLVVFGPILYDFYNYGPQERHFSLLLT 116

Query:   121 KFTQSXXXXXXXXXXXXMKNSMP-RRQLKRKVPKTK 155
             +F QS            MKNS P ++ LK++ PK K
Sbjct:   117 EFLQSVALFGALLFFIGMKNSTPAKKNLKKRTPKPK 152

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2086248 AT3G23190 "AT3G23190" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query:    90 LLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQ 124
             LLL++QA+ +PILYDFYN D D+  F   + KF +
Sbjct:    90 LLLVYQAILSPILYDFYNRDYDRDHFTVFYTKFKE 124

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006826 "iron ion transport" evidence=RCA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2086238 AT3G23180 "AT3G23180" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 35/118 (29%), Positives = 55/118 (46%)

Query:     4 VSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIK 63
             V  +GR LFAS F LS+W ++ E   +         PKF         ++G Q     IK
Sbjct:    21 VETIGRALFASSFFLSSWHDYMELKANWNGTEDYWSPKF--------GYSGDQ-----IK 67

Query:    64 YLVXXXXXXXXXXXXXXXXXXXXXXYLLLLHQALATPILYDFYNYDADKKEFGQIFIK 121
             +L+                      +LLL++Q +AT + +DFYN+  D +EFG +++K
Sbjct:    68 HLMTVSIIVRTLGGLIFIYGSFFGAFLLLMYQGIATMVHHDFYNHRLDTEEFGLLYLK 125

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:504955777 AT3G23175 "AT3G23175" [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 0.00079, P = 0.00079
 Identities = 26/107 (24%), Positives = 49/107 (45%)

Query:     1 MAFVSFVGRVLFASIFLLSAWQEFNEF--GVDGGPAAKSLEPKFHIFSKH---VLS-HTG 54
             M  ++F GR+ F+ +F ++A Q++ +   G  GGP  K++ P  ++ SK+    L+ + G
Sbjct:    20 MPAIAFFGRMAFSFVFFITAIQDYADHYGGGAGGPLEKTMGPAVNMLSKYGSKALTFYFG 79

Query:    55 VQVPDVEIKYLVXXXXXXXXXXXXXXXXXXXXXXYLLLLHQALATPI 101
             +QV   +++ +                       Y LL  Q  +T I
Sbjct:    80 MQVVAFDVRLIEFALISAKATAALWFIFGQSIPAYFLLATQIFSTVI 126


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.140   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      157       123   0.00091  102 3  11 22  0.45    30
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  125 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.24u 0.08s 10.32t   Elapsed:  00:00:01
  Total cpu time:  10.25u 0.08s 10.33t   Elapsed:  00:00:01
  Start:  Mon May 20 22:17:07 2013   End:  Mon May 20 22:17:08 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020183001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (157 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
pfam05514	138	pfam05514, HR_lesion, HR-like lesion-inducing	4e-70

>gnl|CDD|191296 pfam05514, HR_lesion, HR-like lesion-inducing

 Score =  207 bits (528), Expect = 4e-70
 Identities = 106/138 (76%), Positives = 124/138 (89%)

Query: 1   MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
           M F+SF+GRVLFAS+FLLSAWQEF+EFG DGGPAAK L PKF++FSKHV  H G+QVP +
Sbjct: 1   MPFLSFLGRVLFASVFLLSAWQEFSEFGADGGPAAKELRPKFNMFSKHVSKHLGMQVPHI 60

Query: 61  EIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
           ++K++VAA IALKG+GGLLFIFGSSFGAYLLL++QA ATPILYDFYNYD D+ EF Q+F 
Sbjct: 61  DVKHIVAALIALKGLGGLLFIFGSSFGAYLLLVYQAFATPILYDFYNYDVDRSEFVQLFN 120

Query: 121 KFTQSLALLGALLFFIGM 138
           KFTQ+LALLGALLFFIGM
Sbjct: 121 KFTQNLALLGALLFFIGM 138

Family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens. Length = 138

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PF05514	138	HR_lesion: HR-like lesion-inducing ; InterPro: IPR	100.0
COG2259	142	Predicted membrane protein [Function unknown]	99.85
PF07681	85	DoxX: DoxX; InterPro: IPR011637 These proteins app	99.47
PF02077	267	SURF4: SURF4 family; InterPro: IPR002995 The surfe	99.31
PF02077	267	SURF4: SURF4 family; InterPro: IPR002995 The surfe	98.43
PF07291	184	MauE: Methylamine utilisation protein MauE; InterP	98.29
KOG3998	270	consensus Putative cargo transport protein ERV29 [	98.21
PF13564	103	DoxX_2: DoxX-like family	97.97
KOG3998	270	consensus Putative cargo transport protein ERV29 [	97.95
COG4270	131	Predicted membrane protein [Function unknown]	97.35
PF04173	167	DoxD: TQO small subunit DoxD; InterPro: IPR007301	96.89
PF15111	251	TMEM101: TMEM101 protein family	95.88
PF04224	175	DUF417: Protein of unknown function, DUF417; Inter	95.82
PF15111	251	TMEM101: TMEM101 protein family	94.94
PF13781	102	DoxX_3: DoxX-like family	90.34
COG3059	182	Predicted membrane protein [Function unknown]	87.24
smart00752	271	HTTM Horizontally Transferred TransMembrane Domain	85.33

>PF05514 HR_lesion: HR-like lesion-inducing ; InterPro: IPR008637 This is a family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens

Probab=100.00  E-value=6.2e-36  Score=225.83  Aligned_cols=138  Identities=72%  Similarity=1.218  Sum_probs=133.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 031593            1 MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLF   80 (157)
Q Consensus         1 M~~~~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll   80 (157)
                      |+.+.++||++++++|+.|+|||+.++.+++++++|++.|+++.+.+++.++.|+++|+.|.+.++.++|++|.+||+++
T Consensus         1 M~f~sf~GRvLFAs~FllSA~q~f~~fg~dGgpaak~l~Pkl~~~~~~i~s~lG~~vp~~~~k~lv~~~i~lkglGgiLF   80 (138)
T PF05514_consen    1 MGFSSFVGRVLFASVFLLSAWQKFNEFGDDGGPAAKALAPKLNVFKKHISSKLGVQVPHIDVKHLVAAAIALKGLGGILF   80 (138)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHchhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 031593           81 IFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIGM  138 (157)
Q Consensus        81 ~~G~r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~~~  138 (157)
                      ++|.++||.+|++|++++|++.|||||++.+.+|+.+++++|+||++++|+||+++++
T Consensus        81 i~gss~GA~LLll~l~~~Tpi~~dFyn~~~~~~e~~~~l~~F~qnlAL~GALLfFlgM  138 (138)
T PF05514_consen   81 IFGSSFGAYLLLLYLAIVTPILYDFYNYDSESAEFVQLLIMFLQNLALFGALLFFLGM  138 (138)
T ss_pred             HhcchhHHHHHHHHHHHHHHHhhhhhccCCChhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999888888899999999999999999998874

>COG2259 Predicted membrane protein [Function unknown]

Probab=99.85  E-value=2.1e-20  Score=142.14  Aligned_cols=123  Identities=24%  Similarity=0.331  Sum_probs=106.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHh-ccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 031593            2 AFVSFVGRVLFASIFLLSAWQEFN-EFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLF   80 (157)
Q Consensus         2 ~~~~~igRvlla~~Fi~sG~~kl~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll   80 (157)
                      +...++.|++++.+|+.+|++|+. +++               ++.+|+++ .|.|.|.+    .+..++..|++||+++
T Consensus        13 ~~~lli~Rl~l~~~fi~~G~~K~~~~~~---------------g~~~~~~~-~g~p~~~~----~a~~~~~~El~~glll   72 (142)
T COG2259          13 DLGLLILRLLLALIFIVSGLGKLFGGLA---------------GTIQYFES-LGLPPPTL----LAILAAILELVGGLLL   72 (142)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHccCcH---------------HHHHHHHH-cCCChHHH----HHHHHHHHHHHHHHHH
Confidence            467899999999999999999999 565               46677776 99999987    7888999999999999


Q ss_pred             HHhh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---cccCCcchhhhhcc
Q 031593           81 IFGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFI---GMKNSMPRRQLKRK  150 (157)
Q Consensus        81 ~~G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~---~~~~sl~~r~~~~~  150 (157)
                      ++|.  |++|+.+++|++++++..|.+|+... .    .+ ++|.+|++++|+++.++   ++++|+|+|..++.
T Consensus        73 llGl~tr~aA~~l~~~~l~a~~~~h~~~~~~~-~----~~-~~~~~~l~~~~~~l~l~~~G~G~~sld~~~~~~~  141 (142)
T COG2259          73 LLGLFTRLAALVLAVFMLVAIFAVHAFWGFFG-L----AN-NGFEKNLLLIGGLLLLAITGAGRLSLDAKLRKAA  141 (142)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhhcc-c----cc-hhHHHHHHHHHHHHHHHhcCCcccccchhccccc
Confidence            9999  99999999999999999999997411 1    11 68999999999999988   56999999877654

>PF07681 DoxX: DoxX; InterPro: IPR011637 These proteins appear to have some sequence similarity with IPR007301 from INTERPRO but their function is unknown []

Probab=99.47  E-value=7.7e-13  Score=91.39  Aligned_cols=80  Identities=24%  Similarity=0.316  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc--cccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 031593            5 SFVGRVLFASIFLLSAWQEFNE--FGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIF   82 (157)
Q Consensus         5 ~~igRvlla~~Fi~sG~~kl~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~~   82 (157)
                      .++.|++++..|+.+|++|+.+  ++               ...+++++ .|.|.|+.    ....++..|+++|+++++
T Consensus         2 ll~~Ri~lg~~f~~~G~~K~~~~~~~---------------~~~~~~~~-~~~~~~~~----~~~~~~~~E~~~gl~l~~   61 (85)
T PF07681_consen    2 LLILRILLGLVFLFHGLQKLFGFGPE---------------GFAGFFAP-FGLPPPGL----FAYLAGIAELVGGLLLLL   61 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcH---------------HHHHHHHH-cCCCchHH----HHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999994  33               35667775 89888877    899999999999999999


Q ss_pred             hh--HHHHHHHHHHHHHHHHHhcc
Q 031593           83 GS--SFGAYLLLLHQALATPILYD  104 (157)
Q Consensus        83 G~--r~~A~~La~f~v~tt~~~H~  104 (157)
                      |+  |++|..++.+++.+++.+|+
T Consensus        62 G~~tr~aa~~~~~~~~~~~~~~H~   85 (85)
T PF07681_consen   62 GLFTRLAALVLALFMLVATFFVHW   85 (85)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcC
Confidence            99  99999999999999999995

They are predicted inner membrane proteins.

>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum []

Probab=99.31  E-value=3.4e-11  Score=100.44  Aligned_cols=106  Identities=21%  Similarity=0.357  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 031593            3 FVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIF   82 (157)
Q Consensus         3 ~~~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~~   82 (157)
                      .+.+.||+++.++|+.---.+   ++                               .    .-.....+..+..+++++
T Consensus       154 yl~LaGRill~~mFi~~~~~~---~s-------------------------------~----~~ii~~~~g~~l~i~v~v  195 (267)
T PF02077_consen  154 YLQLAGRILLVLMFITLLHFE---WS-------------------------------F----LRIILSIVGLALCILVVV  195 (267)
T ss_pred             HHHHHhHHHHHHHHHHHHHHh---cc-------------------------------H----HHHHHHHHHHHHHHHHHH
Confidence            567899999999997543221   11                               0    111223556666788899


Q ss_pred             hh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---cccCCcchhh
Q 031593           83 GS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFI---GMKNSMPRRQ  146 (157)
Q Consensus        83 G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~---~~~~sl~~r~  146 (157)
                      |+  |++|.+|++.+....+..|+||+++++...+.....+|++|+|++||+|++.   +++.|+|++.
T Consensus       196 Gyktk~~A~~Lv~~L~~~n~~~n~fW~~~~~~~~~dflkydFfq~lSviGGLLllv~~GpG~~S~D~~K  264 (267)
T PF02077_consen  196 GYKTKLSALLLVLWLSIYNVFVNNFWFYPSDSPMRDFLKYDFFQTLSVIGGLLLLVNLGPGGLSLDEKK  264 (267)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHhc
Confidence            99  9999999999999999999999986543333344679999999999999998   5699999873

; GO: 0016021 integral to membrane

>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum []

Probab=98.43  E-value=1.2e-06  Score=73.31  Aligned_cols=108  Identities=15%  Similarity=0.207  Sum_probs=87.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 031593            2 AFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFI   81 (157)
Q Consensus         2 ~~~~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~   81 (157)
                      +.+..+||.++.+.|+-+|+.-..+|.+               =..|+....+.|.-  =....+...++.|++|+++++
T Consensus        20 ~~LP~iaR~~iVsTFlED~lRi~~QW~~---------------Q~~yl~~~w~~~~~--la~lfl~~n~i~ql~gs~LVl   82 (267)
T PF02077_consen   20 PYLPTIARFLIVSTFLEDGLRIWFQWSD---------------QVDYLQNSWHCGWF--LAVLFLLLNIIGQLVGSILVL   82 (267)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhHHH---------------HHHHHHHhcCCChH--HHHHHHHHHHHHHhhhhheEe
Confidence            4678999999999999999999999983               34577765665432  122277788999999999999


Q ss_pred             Hhh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 031593           82 FGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIG  137 (157)
Q Consensus        82 ~G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~~  137 (157)
                      +-+  ..+..+|....+.-+..++-+|+           ..-+++|+|++||++++.+
T Consensus        83 ~rk~~~~a~~~L~~vvvlQ~i~Y~l~~d-----------~~fllRnlsviGgLLLl~a  129 (267)
T PF02077_consen   83 LRKKVEYACGLLFGVVVLQTIAYGLLWD-----------LKFLLRNLSVIGGLLLLLA  129 (267)
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHH
Confidence            866  88888888888899999888883           4568999999999998884

; GO: 0016021 integral to membrane

>PF07291 MauE: Methylamine utilisation protein MauE; InterPro: IPR009908 This entry consists of several bacterial methylamine utilisation MauE proteins

Probab=98.29  E-value=2.4e-05  Score=62.04  Aligned_cols=117  Identities=23%  Similarity=0.259  Sum_probs=76.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 031593            2 AFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFI   81 (157)
Q Consensus         2 ~~~~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~   81 (157)
                      |++.++.|.+++.+|+.+|+.|+.|++               .+.+.+.+ +.+ +|+.-...++..-..+|++.|++++
T Consensus         7 P~v~~~~r~~l~llf~~aai~Kl~d~~---------------~F~~~i~~-y~l-lP~~~~~~~A~~lP~~El~~gl~Ll   69 (184)
T PF07291_consen    7 PVVSLLLRLFLALLFLYAAISKLRDPE---------------AFAASIAA-YRL-LPDWLVRPVAWALPWLELALGLLLL   69 (184)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCHH---------------HHHHHHHH-ccc-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678899999999999999999999987               24445554 443 3432223356667799999999999


Q ss_pred             Hhh--HH----HHHHHHHHHHHHHHHhccCCC-CC-----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031593           82 FGS--SF----GAYLLLLHQALATPILYDFYN-YD-----ADKKEFGQIFIKFTQSLALLGALLFFI  136 (157)
Q Consensus        82 ~G~--r~----~A~~La~f~v~tt~~~H~FW~-~~-----~~~~~~~~~~~~FlkNlal~GGll~~~  136 (157)
                      ++.  +.    ++.++.+|++..+....+-.. .+     .+.++ ..-..+..+|+.+++..+.++
T Consensus        70 ~~~~~~~a~~~a~~Ll~~F~~ai~~~~~rg~~~idCGCfG~~~~~-~l~~~~v~Rn~~L~~~al~la  135 (184)
T PF07291_consen   70 FPPTRRWAALLAAALLLVFTAAIAINLLRGRTDIDCGCFGGGSSE-PLGWFLVVRNLLLAALALALA  135 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC-ccCHHHHHHHHHHHHHHHHHH
Confidence            987  33    344556666555544332221 11     01111 223567899999987665544

Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded [].; GO: 0030416 methylamine metabolic process, 0016021 integral to membrane

>KOG3998 consensus Putative cargo transport protein ERV29 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=3.6e-06  Score=69.80  Aligned_cols=69  Identities=20%  Similarity=0.254  Sum_probs=56.0

Q ss_pred             HHHHHhh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---cccCCcchhh
Q 031593           78 LLFIFGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFI---GMKNSMPRRQ  146 (157)
Q Consensus        78 lll~~G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~---~~~~sl~~r~  146 (157)
                      +++.+|+  ++.|++|.+-+....+...+||+.+.+..-...-...|+.++|++||+|++.   ++..|+|++.
T Consensus       194 i~v~lGfktKl~a~llvl~L~~~ni~~N~~w~ip~~~~~~df~rydFfqtlSvIGGlLllv~~GpG~~SvDe~K  267 (270)
T KOG3998|consen  194 IFVWLGFKTKLFAILLVLWLFGYNILLNAWWTIPSDNPLRDFSRYDFFQTLSVIGGLLLLVNTGPGGVSVDEKK  267 (270)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHhhchhhhccCCchHHHHHHHHHHHHHHHhccEEEEEEecCceeeecccc
Confidence            4556799  9999999999999999999999976643332234788999999999999888   4588888854

>PF13564 DoxX_2: DoxX-like family

Probab=97.97  E-value=7.9e-05  Score=53.06  Aligned_cols=73  Identities=19%  Similarity=0.127  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHh----
Q 031593            8 GRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFG----   83 (157)
Q Consensus         8 gRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~~G----   83 (157)
                      -+.+++..|+.+|+.|+.+.+.               ..+.+++ .|.  |+.    ..+..+.+|++|+++++.+    
T Consensus         2 l~~lla~~f~~~g~~kl~~~~~---------------~~~~~~~-~g~--p~~----~~~~~G~~Ei~gai~Ll~~~~~~   59 (103)
T PF13564_consen    2 LTILLALFFLFSGVMKLFGPPE---------------MVEMFPK-LGY--PKW----FVYVVGVLEILGAIGLLIPLFWN   59 (103)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHH---------------HHHHhHh-cCC--CHH----HHHHHHHHHHHHHHHHHHccccc
Confidence            4678999999999999997651               3333344 664  544    7889999999999999998    


Q ss_pred             -h--HHHHHHHHHHHHHHHHHhc
Q 031593           84 -S--SFGAYLLLLHQALATPILY  103 (157)
Q Consensus        84 -~--r~~A~~La~f~v~tt~~~H  103 (157)
                       +  .+++..+...++.+.. .|
T Consensus        60 ~~~~~~aa~~l~~~m~~A~~-~h   81 (103)
T PF13564_consen   60 PRLSPLAALGLLVLMLGAIY-TH   81 (103)
T ss_pred             cHHHHHHHHHHHHHHHHHHH-HH
Confidence             4  6777777777766655 55

>KOG3998 consensus Putative cargo transport protein ERV29 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=3.4e-05  Score=64.08  Aligned_cols=108  Identities=14%  Similarity=0.239  Sum_probs=83.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 031593            2 AFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFI   81 (157)
Q Consensus         2 ~~~~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~   81 (157)
                      +.++.++|.++.+.|...|+.-+.+++.               -.+|+....|.+--  -....+......|++|..+++
T Consensus        23 ~ylptlaRl~ivSTf~eD~lri~~qw~~---------------q~~~~~~~~~~~~~--~a~~~~~v~~l~~l~g~~liv   85 (270)
T KOG3998|consen   23 PYLPTLARLLIVSTFFEDGLRIVFQWPL---------------QVSYLNINWGCGYF--FAGVFTIVMVLGQLVGSVLIV   85 (270)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhhccHH---------------HHHHHHHhcCCCcH--HHHHHHHHHHHHHHhcceEee
Confidence            4678999999999999999999999983               34566655555422  111266677788999999988


Q ss_pred             Hhh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 031593           82 FGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIG  137 (157)
Q Consensus        82 ~G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~~  137 (157)
                      .++  ..+..+|..-.+.-+..+|-+|+           ..-++.|.|++||++++.+
T Consensus        86 ~rkkv~~a~glL~~~~~lq~i~y~i~t~-----------~~~~~rN~sviggllLlla  132 (270)
T KOG3998|consen   86 LRKKVAYATGLLLFIVVLQTIAYSILTD-----------LVFLLRNISVIGGLLLLLA  132 (270)
T ss_pred             eehhhHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHH
Confidence            888  66777777778888888888883           4568999999999998774

>COG4270 Predicted membrane protein [Function unknown]

Probab=97.35  E-value=0.00081  Score=50.01  Aligned_cols=79  Identities=23%  Similarity=0.271  Sum_probs=55.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 031593            1 MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLF   80 (157)
Q Consensus         1 M~~~~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll   80 (157)
                      |+..+.+-|.+++.-|+.-|+.++...+.               +.+.++  .-+|.|    .+.+.+++++|+.||+.+
T Consensus         2 ~~~~R~L~~~~la~~f~~iGi~HF~r~eq---------------f~~IVP--p~vP~p----~tav~VSG~fEilgglaL   60 (131)
T COG4270           2 MNSARTLLLAFLAAAFLLIGIGHFTRPEQ---------------FRRIVP--PCVPLP----KTAVLVSGIFEILGGLAL   60 (131)
T ss_pred             CcHHHHHHHHHHHHHHHHHhhhhccchhh---------------hcccCC--CCCCcc----hhHHHHHHHHHHHhhhhh
Confidence            45667778889999999999999987661               211111  234555    347889999999999999


Q ss_pred             HHhh--HHHHHHHHHHHHHHHH
Q 031593           81 IFGS--SFGAYLLLLHQALATP  100 (157)
Q Consensus        81 ~~G~--r~~A~~La~f~v~tt~  100 (157)
                      ++-.  +.++.-|..+++..++
T Consensus        61 lip~~s~~aa~gl~~l~laVfP   82 (131)
T COG4270          61 LIPAPSQAAAWGLIILLLAVFP   82 (131)
T ss_pred             hcCCcHHHHHhhHHHHHHHHcc
Confidence            9855  5555556555555443

>PF04173 DoxD: TQO small subunit DoxD; InterPro: IPR007301 P97207 from SWISSPROT is a subunit of the terminal quinol oxidase present in the plasma membrane of Acidianus ambivalens, with calculated molecular mass of 20

Probab=96.89  E-value=0.042  Score=43.25  Aligned_cols=133  Identities=18%  Similarity=0.205  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHH-Hhccc-cCCCccccccchhHHHhHHhHHhhc--------CCCCCchhHHHHHHHHHHHHHH
Q 031593            6 FVGRVLFASIFLLSAWQE-FNEFG-VDGGPAAKSLEPKFHIFSKHVLSHT--------GVQVPDVEIKYLVAAAIALKGI   75 (157)
Q Consensus         6 ~igRvlla~~Fi~sG~~k-l~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~--------G~p~p~~~~~~~~~~~~~~el~   75 (157)
                      +.-|+..+..|+..|+.| +.+++ -++. +...+.-   .+.++++...        =+.-|..... ....-..+|++
T Consensus         3 l~lR~~~G~~~~~ag~rr~il~p~kL~p~-~~~~vg~---k~~~~lp~a~~~~~~i~~~v~~~~~l~~-~lv~ft~vE~~   77 (167)
T PF04173_consen    3 LALRLVVGWIWFSAGWRRKILNPAKLDPN-STSYVGG---KFNQFLPHALPIKPFIEFVVLPPDLLFG-FLVVFTIVEII   77 (167)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcCCCCCC-cccHHHH---HHHHhCcCccccHHHHHHHhcCHHHHHH-HHHHHHHHHHH
Confidence            567999999999999985 55552 1111 1111111   1111222110        0112222222 22233467999


Q ss_pred             HHHHHHHhh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCcchhhhhccC
Q 031593           76 GGLLFIFGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFI--GMKNSMPRRQLKRKV  151 (157)
Q Consensus        76 gGlll~~G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~--~~~~sl~~r~~~~~~  151 (157)
                      -|+++++|.  |++++.-+...+.-.  .-..|.-..-.+|.+  +.-    +.+++|+.++.  ++++|+|.-..+|.+
T Consensus        78 ~Gl~LilGL~TRLaa~~~~~l~~~i~--L~a~W~g~tc~dEw~--i~~----l~~a~~~~L~~~g~g~~sLD~~l~~k~~  149 (167)
T PF04173_consen   78 FGLLLILGLFTRLAALVALGLALGIL--LSAGWLGTTCLDEWQ--INS----LMMAAGLTLFLTGGGRFSLDYYLLRKFP  149 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccCCCCCccHHH--HHH----HHHHHHHHHHHhcCCccccHHHHHHHhh
Confidence            999999999  998887544433333  334785321112322  221    23455544444  568999986554443

4 kDa []. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon A. ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.

>PF15111 TMEM101: TMEM101 protein family

Probab=95.88  E-value=0.065  Score=44.38  Aligned_cols=108  Identities=16%  Similarity=0.252  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 031593            5 SFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFGS   84 (157)
Q Consensus         5 ~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~~G~   84 (157)
                      .-.||+.++..-|.+++.-....++               -.+|+   ..+|--+.    .+..-.+.-+++|+++.-|+
T Consensus       136 ~~tgq~~lgiyli~~Ay~L~~S~Ed---------------r~A~l---~hipgge~----~l~~~~v~y~~~gl~flsgy  193 (251)
T PF15111_consen  136 QSTGQVFLGIYLICVAYSLQHSKED---------------RLAYL---NHIPGGEV----MLQLLVVLYVVLGLAFLSGY  193 (251)
T ss_pred             hhhhHHHHHHHHHHHHHHHHcCHHH---------------HHHHH---hhCCCCch----hHHHHHHHHHHHHHHHHccc
Confidence            3468888888888888875554431               11122   23444444    45566688899999999999


Q ss_pred             --HHHHHHHHHHHHHHHHHhc---cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031593           85 --SFGAYLLLLHQALATPILY---DFYNYDADKKEFGQIFIKFTQSLALLGALLFF  135 (157)
Q Consensus        85 --r~~A~~La~f~v~tt~~~H---~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~  135 (157)
                        +..+-.|++-+.++++..-   .||-... .-|+=+|+...-.|+++.|++++.
T Consensus       194 ~~~~~~~~lav~l~~~~l~iDgnv~yW~~s~-~vEfW~Qm~li~~nv~I~ga~~il  248 (251)
T PF15111_consen  194 YVKLAAQILAVLLPFVILLIDGNVKYWHKSR-RVEFWNQMKLIGRNVGIFGALLIL  248 (251)
T ss_pred             cHHHHHHHHHHHHHHhheEEecchhhhhcch-hhhHHHHHHHHHhcchHhhheeee
Confidence              8888888888877777755   7886544 445566788899999999998865

>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria

Probab=95.82  E-value=0.22  Score=39.43  Aligned_cols=125  Identities=16%  Similarity=0.128  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHH--hHHhHHhhc---------CCCCCc-------hhHHHHH
Q 031593            5 SFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHI--FSKHVLSHT---------GVQVPD-------VEIKYLV   66 (157)
Q Consensus         5 ~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~---------G~p~p~-------~~~~~~~   66 (157)
                      ..+.|+-+..+|+.-|..|+.+++.      +...|.++.  +.+++=+..         |- .|+       -+.+..-
T Consensus        15 ~~i~r~~i~iVl~WiG~lKf~~yEA------~gI~PlVanSPlmswlY~~~~~~~~~~~~~~-~~~n~~wh~~n~~~~~S   87 (175)
T PF04224_consen   15 YNILRLGIVIVLLWIGGLKFTPYEA------DGIVPLVANSPLMSWLYDVFSYKYHQNKEGE-VPENRAWHKANGTYGFS   87 (175)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhHHHH------hhhhHHHhCCcHHHHHhhccchhhhhccccc-cHHHHHHHHhcCchhhH
Confidence            4578999999999999999999994      334444411  112211111         11 110       0234466


Q ss_pred             HHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHhc----cCCCCChh--HHHHHHHHHHHHHHHHHHHHHHHH
Q 031593           67 AAAIALKGIGGLLFIFGS-----SFGAYLLLLHQALATPILY----DFYNYDAD--KKEFGQIFIKFTQSLALLGALLFF  135 (157)
Q Consensus        67 ~~~~~~el~gGlll~~G~-----r~~A~~La~f~v~tt~~~H----~FW~~~~~--~~~~~~~~~~FlkNlal~GGll~~  135 (157)
                      ..-+++|++.|+++++|.     .....+++..+-.+|+.+-    .-|....+  +.-... =+--+|++.++|+.+.+
T Consensus        88 ~~lG~vEi~~~ill~~g~~~p~~g~~G~ll~~~~flvTLSFL~TTP~vw~~~~GGFP~Lsg~-g~fllKDivlLa~~l~~  166 (175)
T PF04224_consen   88 YLLGVVEIIIGILLLLGIWSPKLGILGGLLAFGTFLVTLSFLFTTPGVWVPSLGGFPYLSGA-GRFLLKDIVLLAASLVL  166 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeccCCCCceecCC-CchHHHHHHHHHHHHHH
Confidence            778899999999999998     3344556666667776665    45654321  000000 12368999999998877


Q ss_pred             Hc
Q 031593          136 IG  137 (157)
Q Consensus       136 ~~  137 (157)
                      ++
T Consensus       167 ~~  168 (175)
T PF04224_consen  167 LS  168 (175)
T ss_pred             HH
Confidence            64

>PF15111 TMEM101: TMEM101 protein family

Probab=94.94  E-value=0.14  Score=42.42  Aligned_cols=67  Identities=18%  Similarity=0.235  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhc----cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 031593           65 LVAAAIALKGIGGLLFIFGS--SFGAYLLLLHQALATPILY----DFYNYDADKKEFGQIFIKFTQSLALLGALLFFIGM  138 (157)
Q Consensus        65 ~~~~~~~~el~gGlll~~G~--r~~A~~La~f~v~tt~~~H----~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~~~  138 (157)
                      .+..-+++-++||..+-+|.  |+.|++.|+-+...|.+.+    --|    .++   .....+.++++++||.+.++++
T Consensus        49 ~vY~~~gv~vlc~T~MSf~~krR~fai~tA~QL~Isty~~~~~~~~~Y----~~W---LkvR~~sR~laiIGgyL~lasG  121 (251)
T PF15111_consen   49 YVYVDMGVAVLCATFMSFGVKRRWFAIVTAVQLAISTYLSCFGQQVHY----SEW---LKVRMYSRSLAIIGGYLRLASG  121 (251)
T ss_pred             EeehhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccch----hhH---HHHHHHHHHHHHHHhHhhcccc
Confidence            45778888999999999998  8888888887777666654    122    123   2246699999999999998854

>PF13781 DoxX_3: DoxX-like family

Probab=90.34  E-value=5.1  Score=28.68  Aligned_cols=67  Identities=21%  Similarity=0.157  Sum_probs=49.1

Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHH
Q 031593           53 TGVQVPDVEIKYLVAAAIALKGIGGLLFIFGS------SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSL  126 (157)
Q Consensus        53 ~G~p~p~~~~~~~~~~~~~~el~gGlll~~G~------r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNl  126 (157)
                      .|++.+.  ...+++.++++|++=|++++..+      .....++..+++..++..=++|-.         -.+-..||+
T Consensus        27 ~G~~~~~--a~~~~~~~g~~di~lGl~~l~~~~~r~~~~l~i~~~l~y~~~~~~~~P~lw~~---------Pf~Pl~knl   95 (102)
T PF13781_consen   27 VGLPGAL--APLLLYAGGLLDIALGLLLLSRRRRRWLLLLQIALLLGYTLAIAILLPELWLH---------PFNPLVKNL   95 (102)
T ss_pred             hCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHh---------hhhhHHHHH
Confidence            6876542  23478888999999999999866      344456777888888877778842         156689999


Q ss_pred             HHHH
Q 031593          127 ALLG  130 (157)
Q Consensus       127 al~G  130 (157)
                      .++.
T Consensus        96 p~l~   99 (102)
T PF13781_consen   96 PMLA   99 (102)
T ss_pred             HHHH
Confidence            8875

>COG3059 Predicted membrane protein [Function unknown]

Probab=87.24  E-value=8.7  Score=30.36  Aligned_cols=125  Identities=14%  Similarity=0.148  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHH------hHHhhcCCCCCch-------hHHHHHHHHHHH
Q 031593            6 FVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSK------HVLSHTGVQVPDV-------EIKYLVAAAIAL   72 (157)
Q Consensus         6 ~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~------~~~~~~G~p~p~~-------~~~~~~~~~~~~   72 (157)
                      .+.|+-...+|+.-|.-|+..++.++-...=.+.|.++-+-+      |+. +.|-.-|+-       ........-+++
T Consensus        18 ~lirlsI~ivfiWiG~lKf~pyEAd~I~PfVaNSP~mSf~Yeh~~~~q~m~-~e~~~~pe~~~w~~~n~tY~~S~~lGi~   96 (182)
T COG3059          18 TLIRLSIFIVFIWIGGLKFVPYEADGIAPFVANSPLMSFMYEHPEDEQYMT-HEGEYNPENREWHSENNTYAVSNLLGIT   96 (182)
T ss_pred             eehHHHHHHHHHHHhcceeeechhhhccHHhhCCcHHHHHHhCcchhhhhh-hhhccChhhHHHhhccchhhHHHHhhHH
Confidence            467999999999999999999985332222233444433322      111 123333421       123355567899


Q ss_pred             HHHHHHHHHHhh--HH---HHHHHHHHHHHHHHHhc----cCCC--------CChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031593           73 KGIGGLLFIFGS--SF---GAYLLLLHQALATPILY----DFYN--------YDADKKEFGQIFIKFTQSLALLGALLFF  135 (157)
Q Consensus        73 el~gGlll~~G~--r~---~A~~La~f~v~tt~~~H----~FW~--------~~~~~~~~~~~~~~FlkNlal~GGll~~  135 (157)
                      |++-|++++.|.  +.   ...+|+.-+-.+|+.|-    +-|-        .++..       .--+|++.+++|.+++
T Consensus        97 e~ivgilvL~g~~~~~~Gl~GGll~~~~~ivTLSFLiTTPe~wv~~~~gfp~lsgag-------rlvlKDilmlAgal~v  169 (182)
T COG3059          97 EVIVGILVLIGLRNPKAGLLGGLLVFGTPIVTLSFLITTPEAWVNSLYGFPYLSGAG-------RLVLKDILMLAGALMV  169 (182)
T ss_pred             HHHHHHHHHhccccchHHHhhhhHHHHHHHHHHHhhhcChhhccccccCceeEcccc-------hhhHHHHHHHHHHHHH
Confidence            999999999998  33   23334444444444421    2222        12211       2258999999998888


Q ss_pred             Hcc
Q 031593          136 IGM  138 (157)
Q Consensus       136 ~~~  138 (157)
                      ++-
T Consensus       170 ~~~  172 (182)
T COG3059         170 AAD  172 (182)
T ss_pred             HHh
Confidence            764

>smart00752 HTTM Horizontally Transferred TransMembrane Domain

Probab=85.33  E-value=15  Score=30.43  Aligned_cols=128  Identities=20%  Similarity=0.102  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--hccc---cCCCccccccchhHHHhHHhHHhhcCCCCCc---hhHHHHHHHHHHHHHHH
Q 031593            5 SFVGRVLFASIFLLSAWQEF--NEFG---VDGGPAAKSLEPKFHIFSKHVLSHTGVQVPD---VEIKYLVAAAIALKGIG   76 (157)
Q Consensus         5 ~~igRvlla~~Fi~sG~~kl--~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~---~~~~~~~~~~~~~el~g   76 (157)
                      .-+.|++++.+-+.+-+...  .+.+   ++++....+..|..+         .--|.|-   .+........-++.++.
T Consensus         9 La~fRi~~g~~~l~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~---------~~~~~s~~~~~~s~~~~~~l~~~~~v~   79 (271)
T smart00752        9 LAVFRILFGLLMLLDILRERGLSDLDLRYGDPLFFCRLPFPLFD---------IMSPLPFHMLSDSLDWMYLLYALMIVG   79 (271)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCccceeeCCCCCCCCccccccc---------ccccchHhhccCchhHHHHHHHHHHHH
Confidence            45789999999988888774  2222   122211110011111         0011120   00011455556888899


Q ss_pred             HHHHHHhh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchhhhhccCC
Q 031593           77 GLLFIFGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIGMKNSMPRRQLKRKVP  152 (157)
Q Consensus        77 Glll~~G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~~~~~sl~~r~~~~~~~  152 (157)
                      ++++++|+  |+++.+..+   ..+...+..+...++.       .|..-.+.+ ..++.=.+...|+|.+.++|++.
T Consensus        80 ~l~~~lG~~tR~~~~l~~l---~~~sl~~r~~~~~~gg-------d~~~~~~l~-~l~f~p~~~~~SvDa~~~~~~~~  146 (271)
T smart00752       80 ALLLLLGYRTRLSSVLFWL---LVWSIQLRDKTVWNGG-------DHSYLVGLF-LLLFLPAGRYWSIDALRNRRRRD  146 (271)
T ss_pred             HHHHHhhHHHHHHHHHHHH---HHHHHHhcchhhhcCc-------cHHHHHHHH-HHHHhcCCCeEeeeccccccccc
Confidence            99999999  887665433   3344444444322211       112222222 11121225589999987665543

Sequence analysis of vitamin K dependent gamma-carboxylases (VKGC) revealed the presence of a novel domain, HTTM (Horizontally Transferred TransMembrane) in its N-terminus. In contrast to most known domains, HTTM contains four transmembrane regions. Its occurrence in eukaryotes, bacteria and archaea is more likely caused by horizontal gene transfer than by early invention. The conservation of VKGC catalytic sites indicates an enzymatic function also for the other family members.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00